emodnet chemistry 2 advanced services progress by deltares service contract mare/2012/10 s12.656742...
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EMODnet Chemistry 2
Advanced services Progress by Deltares
Service Contract MARE/2012/10 S12.656742
ByDick M.A. Schaap – Technical Coordinator
Istanbul – Turkey, 15 June 2015, 2nd plenary meeting
Contract requirements for EMODnet Chemistry
gather all measurements of a particular chemical species with their appropriate metadata within a given space and time window
visualise the measurement density in a given time and space window
visualise a time evolution of a selected group of measurements
show concentration plots for a given time and space window and also along the coast
calculate spatially distributed data products specifically relevant for selected Marine Strategy Framework Directive Descriptors
NODCs data
collection
Regional Buffer 1
Central Data BufferRobot Harvester
Regional Buffer 2
...
Workflow from data to regional data collections
Original plan
Regional Buffers
Regional Validation
RegionalQC’d Buffer
Time Series
DIVA Maps
Visualisation
Workflow from data collections to products to viewing
Implemented
Sextant product
catalogue
Advanced services
The validated and aggregated buffers of data sets are input for the products and advanced services:
Interpolated maps as produced with DIVA software
Time series graphics for all collected data sets via WPS (Deltares)
OceanBrowser viewer (Ulg) as common service for viewing the DIVA maps and giving access to the time series graphics
Sextant catalogue (Ifremer) to document all products with metadata
From QA/QC observations to dynamic data products
Deltares services
ODV to geodata
From geodata to information servicesby OGC WPS servicesaccording to user specified choices
OGC servicesWFS, WPS
ODVMetadata enriched ODV files
Oceanbrowser
Data architecture
Step 1
Step 2
Step 3
Step 4
Data model for metadata enriched ODV collections into PostgreSQL/PostGIS database (hosted at CINECA)
Committing ODV data collections to the database
Creation of data model
Reading QA/QC’d files from regional coordinators
Adding vocabularies, EDMO, Local_CDI_ID,
Fill table observed_cindex (does not give values, but a color index based on the range of values and transformed to rgb scale)
Create/Refresh GeoServer for location and intensity map
Structure of Request
What servicesWhat services
GetCapabilitiesGetCapabilities
Query all observations using cdiQuery all observations using cdi
Cdi_Get_ParametersCdi_Get_Parameters
Query all observations using bboxQuery all observations using bbox
Bbox_Get_ParametersBbox_Get_Parameters
Plot a map in binary mimetypePlot a map in binary mimetype
Cdi_Plot_MapsCdi_Plot_Maps
Plot a profile in binary mimetypePlot a profile in binary mimetype
Cdi_Plot_ProfilesCdi_Plot_Profiles
Plot a timeseriesPlot a timeseries
Cdi_Plot_TimeseriesCdi_Plot_Timeseries
Plot a map in binary mimetypePlot a map in binary mimetype
bbox_Plot_Mapsbbox_Plot_Maps
Plot a profile in binary mimetypePlot a profile in binary mimetype
bbox_Plot_Profilesbbox_Plot_Profiles
Plot a timeseriesPlot a timeseries
bbox_Plot_Timeseriesbbox_Plot_Timeseries
Plot a timeprofilePlot a timeprofile
Cdi_Plot_TimeprofileCdi_Plot_Timeprofile
Plot a timeprofilePlot a timeprofile
bbox_Plot_Timeprofilebbox_Plot_Timeprofile
Status of regional data uploads – by number of CDI’s (status 2015-06-11)
Status of regional data uploads – by number of observations (status 2015-06-11)
Spatial distribution by GeoServer layers in OceanBrowser
Circles show data location (within depth and time range)
Circle are semi-transparent (intensity of a color gives an indication of number of observation points)
Plot of data at selected location as Time Series
Clicking on a circle Time series plots
(x-axis: time; y-axis: parameter)
Depth is represented by color
Plot of data at selected location as Profile
One can switch
between time series and profile view
For profiles(x-axis: parameter
and; y-axis: depth) Time is represented
by color
Remaining actions by Deltares
Tuning and improving speed of viewing service
Tuning and improving speed of access by WPS
Improving density plots
Documentation of services
Transfer to MARIS for operation
www.emodnet-chemistry.eu