enrichment analysis using david
DESCRIPTION
Enrichment analysis using DAVID. By NFU Biology Algorithm lab. Outline. What is DAVID DAVID Tools Tools Demo. What is DAVID. DAVID is a Bioinformatics Database, and it is also provides many tools to analysis the gene data. DAVID Tools. DAVID Tools provides many function about - PowerPoint PPT PresentationTRANSCRIPT
Enrichment analysis using DAVID
By NFU Biology Algorithm lab
Outline
• What is DAVID• DAVID Tools• Tools Demo–Functional Annotation–Gene Functional Classification–Gene ID Conversion
What is DAVID
• DAVID is a Bioinformatics Database, and it is also provides many tools to analysis the gene data.
DAVID Tools
DAVID Tools provides many function about1. Functional Annotation2. Gene Function Classification3. Gene ID Conversion4. Gene Name Batch Viewer5. NIAID Pathogen Annotation
Tools Demo
• Functional Annotation– Step1:Upload the Gene
list for DAVID from Start Analysis
Tools Demo
– Step2&3: Upload and select list type
• Upload list or file to DAVID
• Select Identifier and Gene List
Tools Demo
Tools Demo
The gene list number from users upload
Upload list file name
Choice what kind tools you want(ex: Functional Annotation Tool)
View and select annotation categories of your interests.下一頁有建議選擇
建議三種都下載儲存
Individual view report:Percentage (involved genes/total genes)Gene from your list Single Chart Report for ONLY this annotation category
Tools DemoAnnotation Summary Results
Tools DemoAnnotation Summary Results
• 建議如下:SelectGene-ontology (BP_1)pathways (5)
Tools DemoFunctional Annotation Clustering
Clustering options and stringency
The overall enrichment score for the group based on the EASE score of each term members. The higher, the more enriched.
Tools DemoFunctional Annotation Chart
Minimum number of genes for the corresponding term.
Maximum EASE Score/P-value
Original database/resource where the terms orient
Enriched terms associated with your gene list
Related term search
Modified Fisher Exact P-value, EASE Score. The smaller, the more enriched.
Tools DemoFunctional Annotation Table
Gene Name Annotation terms
Tools DemoGene Functional Classification Result
點選 進入 Gene Functional classification
Tools DemoGene Functional Classification Result
Group options and stringency
The higher, the more enriched.Group number
Tools DemoGene ID Conversion
點選 進入 Gene ID Conversion
Tools DemoGene ID Conversion
選擇想要轉換項目
Tools DemoGene ID Conversion使用者上傳的內容
轉換結果
PRODUCER BY NATIONAL FORMOSA UNIVERSITY BIOLOGY ALGORITHM LAB AT 2012/12
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