european meningococcal epidemiology in real time (emert ii)...the mrf meningococcus genome library...
TRANSCRIPT
![Page 1: European Meningococcal Epidemiology in Real Time (EMERT II)...the MRF Meningococcus Genome Library is here. Status Sequence database sequences: 861835 Profiles: MLST: 12486 rpIF species:](https://reader033.vdocument.in/reader033/viewer/2022060714/607a1ead2c866f219a48b9f4/html5/thumbnails/1.jpg)
European Meningococcal Epidemiology in Real Time
(EMERT II)
Keith Jolley
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EMERT facilitates sharing of molecular typing information among reference laboratories
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EMERT was established nearly 10 years ago
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EMERT reports circulating clonal complex and fine-typing data to participating laboratories
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Entering the genomic era
• EMERT-II will be incorporated in to the PubMLST Neisseria database
• Data can be optionally made public
• Submitters can edit
• Minimal or extensive data can be uploaded
serogroup finetyping MLST whole genome
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Use standard BIGSdb tools on EMERT data
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EMERT II will facilitate reporting of summary data to TESSy
genomes
Single gene results
EMERT II
PubMLST Clonal complex Fine-type (on demand via RESTful API)
TESSy
common identifier
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Common user accounts across PubMLST
PubMLST Web server
Neisseria
seqdef isolates
seqdef isolates
seqdef isolates
Haemophilus influenzae Streptococcus
pneumoniae
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Common user accounts across PubMLST
PubMLST Web server
Neisseria
seqdef isolates
seqdef isolates
seqdef isolates
Haemophilus influenzae Streptococcus
pneumoniae
User database
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Acknowledgements
Martin Maiden
Ulrich Vogel Arie van der Ende Mathew Diggle