EVE 161:Microbial Phylogenomics

Class #7: Era II: rRNA from the Environment

UC Davis, Winter 2018 Instructor: Jonathan Eisen

Teaching Assistant: Cassie Ettinger

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Presenters for Today?

Terminology and Questions?

Differences Between the Papers?

Paper #1

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Lane et al. Abstract

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Lane et al. Background: Why Sequences?

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Lane et al. Background: Why Sequences?

Lane et al. Background: Why rRNA

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Lane et al. Background: Why rRNA

Lane et al. Methods: How Get RNA

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Methods: How Make Primers

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Methods: Reverse Transcriptase

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Methods: Nucleotides

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Methods: Sequencing

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Results and Discussion

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Priming

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Priming

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Priming

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Errors

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Errors

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Alignment

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Phylogeny

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Stahl et al. Abstract

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Stahl et al. Introduction

Stahl et al. Introduction

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Stahl et al. Introduction

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Stahl et al. Methods

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Stahl et al. Methods

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Stahl et al. Methods

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Stahl et al. Methods

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Stahl et al. Results

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Stahl et al. Results

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Stahl et al. Results

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Stahl et al. Results

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Stahl et al. Results

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Stahl et al. Results

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Stahl et al. Results

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Stahl et al. Results

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Stahl et al. Results

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Stahl et al. Results

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Stahl et al. Results

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Stahl et al. Results

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Stahl et al. Results

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Stahl et al. Discussion

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Stahl et al. Discussion

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Stahl et al. Discussion

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Stahl et al. Discussion

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Stahl et al. Discussion

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Stahl et al. Discussion

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Stahl et al. Discussion

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Stahl et al. Discussion

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Stahl et al. Discussion