expanded and engineered nk cells for the treatment of hepatocellular carcinoma · 2020. 6. 8. ·...

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Contact James Trager, PhD [email protected] www.nkartatx.com Background Natural killer (NK) cells offer an alternative to T cells for cellular immunotherapy, as they are not HLA-restricted, and are therefore suitable for allogeneic off-the-shelf use. Expanded NK cells can be engineered to express chimeric receptors to further improve their cytotoxicity against both hematopoietic and solid tumors. In healthy humans, a high proportion of intrahepatic lymphocytes are NK cells 1 , and for cases of hepatocellular carcinoma (HCC), infiltration of CD56 + NK cells positively correlates with cell apoptosis and patient survival 2 . Multiple ligands of the natural killer group 2D (NKG2D) receptor are highly expressed in HCC tissues, but at low levels on healthy tissues 3 , making NKG2D an attractive candidate for NK cell engineering to target HCC. We aimed to demonstrate that engineering of NK cells with an NKG2D chimeric receptor (NKX101) can improve their cytotoxicity against HCC cells in vitro, enhance pro-inflammatory cytokine response, and control tumor burden in an in vivo NSG mouse model. Methods NK cells from peripheral blood mononuclear cells were expanded using co-culture with irradiated K562-mbIL15-41BBL stimulatory cells. NKX101 cells were generated by transduction with a bicistronic virus encoding NKG2D, an intracellular OX40 costimulatory domain, CD3ζ signaling domain, and membrane- bound IL-15, which supports prolonged cell survival and proliferation. NKX101 pro-inflammatory cytokine release in response to 24 hr co-culture with HCC cell lines at a 1:1 ratio was analyzed by Luminex. The in vitro cytotoxicity of NKX101 cells at 4, 24 and 48 hr endpoints was measured using a panel of HCC cell lines engineered to express luciferase. In vivo activity of NKX101 cells was evaluated using an NSG mouse xenograft tumor model in which intraperitoneal (IP) injection of 4 x 10 6 luciferase expressing SNU449 HCC cells was followed one week later with IP administration of 3 x 10 6 NKX101 or unmodified NK cells (NT NK), and tumor growth was measured using IVIS bioluminescence imaging. Combination with a sub- EC50 concentration of the kinase inhibitor sorafenib, an approved agent for HCC, was tested for additive cytotoxic effect at low E:T ratios of NKX101 in vitro at 48 hrs. Expression of NKG2D ligands was assessed by flow cytometry and analyzed for linear correlation with NKX101 cytotoxicity across a panel of HCC cell lines. Expanded and engineered NK cells for the treatment of hepatocellular carcinoma Sarah Wadsworth; Daofeng Liu, PhD; Denise Gonzalez; Guangnan Li, PhD; James B. Trager, PhD Nkarta Therapeutics, South San Francisco, California, USA Results We demonstrate that NKX101 has dramatically improved cytotoxicity versus NT NK cells against a panel of HCC cell lines in vitro. Co-culture of NKX101 with HCC cell lines was shown to enhance pro-inflammatory cytokine release. In an in vivo NSG mouse xenograft HCC model, NKX101 provided complete tumor clearance in 4/5 mice, in contrast to stable control by NT NKs. Combination with the kinase inhibitor sorafenib provided additive in vitro cytotoxicity with NKX101. High expression of NKG2D ligands was observed by flow cytometry, but no individual ligand demonstrated a correlation with NKX101 cytotoxicity. Figure 5: NKG2D ligand expression on human HCC Figure 6: NKX101 cytotoxicity across HCC panel Figure 7: NKX101 anti-tumor efficacy in SNU449 xenograft model 2:1 1:1 1:2 0 20 40 60 80 100 Hep3b E:T ratio %Cytotoxicity 2:1 1:1 1:2 0 20 40 60 80 100 SNU-182 E:T ratio %Cytotoxicity 2:1 1:1 1:2 0 20 40 60 80 100 SNU-423 E:T ratio %Cytotoxicity 2:1 1:1 1:2 0 20 40 60 80 100 HepG2 E:T ratio %Cytotoxicity 2:1 1:1 1:2 0 20 40 60 80 100 SNU-387 E:T ratio %Cytotoxicity 2:1 1:1 1:2 0 20 40 60 80 100 SNU-449 E:T ratio %Cytotoxicity 2:1 1:1 1:2 -400 -300 -200 -100 0 100 HuH-7 E:T ratio %Cytotoxicity 2:1 1:1 1:2 0 20 40 60 80 100 SNU-398 E:T ratio %Cytotoxicity 2:1 1:1 1:2 0 20 40 60 80 100 SNU-475 E:T ratio %Cytotoxicity NT NK NKX101 Figure 9: NKX101 enhanced cytokine response to HCC Figure 10: NKX101 combination with sorafenib Figure 2: NKG2D and ligand family Figure 3: NKX101 chimeric antigen receptor (CAR) Figure 1: Nkarta NK cell platform Figure 5: Expression of NKG2D ligands across a panel of human HCC cell lines by flow cytometry. Figure 2: NKG2D is an activating receptor expressed on NK cells and subsets of T cells that binds to a family of ligands which are upregulated on the surface of cells undergoing stress, excessive proliferation, viral infection, or transformation. This results in NK- mediated cytotoxicity of these abnormal cells and the secretion of cytokines and chemokines to enhance the immune response. Figure 3: NKX101 were generated by transduction of NK cells with a viral construct encoding a CAR including the extracellular domain of NKG2D, hinge and transmembrane regions of CD8, intracellular OX40 costimulatory domain and CD3ζ signaling domain. Membrane-bound IL-15 is co-expressed following a T2A self-cleaving peptide sequence. Lanier; Cancer Immunol Res 2015 Figure 6: In vitro cytotoxicity of NKX101 cells at 24 hr endpoint measured using a panel of HCC cell lines engineered to express luciferase. Averages shown for 2 donors at day 30 post-expansion. Figure 7: In vivo activity of NKX101 cells in NSG mouse HCC xenograft tumor model. Intraperitoneal (IP) injection of 4 x 10 6 luciferase expressing SNU449 cells was followed one week later with IP injection of 3 x 10 6 NKX101 or NT NK, and tumor growth was measured using IVIS bioluminescence imaging. Figure 10: Combination with a sub-EC50 concentration of the kinase inhibitor sorafenib, an approved treatment for HCC, was tested for additive cytotoxic effect at low E:T ratios of NKX101 or NT NK cells in vitro at 48 hrs. Averages shown for 2 donors at day 30 post-expansion. Figure 9: Luminex analysis of NKX101 pro-inflammatory cytokine release in response to 24 hr co-culture with HCC cell lines at a 1:1 E:T ratio. Averages shown for 2 donors at day 30 post-expansion. Figure 1: Nkarta Natural Killer (NK) cell platform showing ex vivo cell expansion, activation and genetic modification procedures 0.1 1 10 0 20 40 60 80 100 Hep3b E:T ratio %Cytotoxicity EC50 NT NK 2.287 NKX101 0.6538 0.1 1 10 0 20 40 60 80 100 SNU449 E:T ratio %Cytotoxicity NT NK NKX101 EC50 NT NK 4.625 NKX101 1.012 Figure 4: NKX101 enhanced cytotoxicity against HCC Figure 4: In vitro cytotoxicity of NKX101 cells at 4 hr endpoint measured in 2 model HCC cell lines engineered to express luciferase. Averages shown for NKX101 and unmodified (NT NK) NK cells from 2 donors at day 21 post-expansion with K562- mbIL15-41BBL stimulatory cells. EC50 values calculated using Prism 4-parameter non-linear regression analysis. Conclusions NKX101 demonstrates improved cytokine release and cytotoxicity against multiple HCC cell lines in vitro, shows clearance of tumor burden in an in vivo HCC xenograft model, and has potential for combination therapy with current HCC approved treatment sorafenib. Figure 8: NKX101 sensitivity vs. NKG2DL expression Figure 8: NKX101 % cytotoxicity across a panel of HCC cell lines at an E:T ratio of 1:2 was analyzed for linear correlation with flow cytometry delta mean fluorescence intensity (dMFI) for individual NKG2D ligands. Values for dMFIs were calculated as target MFI – isotype MFI. 1 Tian, Z et al. Natural killer cells in liver disease. Hepatology 2013, 57, 1654–1662 2 Chew, V et al. Inflammatory tumor microenvironment is associated with superior survival in hepatocellular carcinoma patients. J Hepatol. 2010 52(3):370-9 3 Kamimura H. Et al. Reduced NKG2D ligand expression in hepatocellular carcinoma correlates with early recurrence. J Hepatol. 2012 Feb;56(2):381-8

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Page 1: Expanded and engineered NK cells for the treatment of hepatocellular carcinoma · 2020. 6. 8. · 2Chew, V et al. Inflammatory tumor microenvironment is associated with superior survival

Contact James Trager, [email protected]

BackgroundNatural killer (NK) cells offer an alternative to T cells for cellularimmunotherapy, as they are not HLA-restricted, and aretherefore suitable for allogeneic off-the-shelf use. ExpandedNK cells can be engineered to express chimeric receptors tofurther improve their cytotoxicity against both hematopoieticand solid tumors. In healthy humans, a high proportion ofintrahepatic lymphocytes are NK cells1, and for cases ofhepatocellular carcinoma (HCC), infiltration of CD56+ NK cellspositively correlates with cell apoptosis and patient survival2.Multiple ligands of the natural killer group 2D (NKG2D)receptor are highly expressed in HCC tissues, but at low levelson healthy tissues3, making NKG2D an attractive candidate forNK cell engineering to target HCC. We aimed to demonstratethat engineering of NK cells with an NKG2D chimeric receptor(NKX101) can improve their cytotoxicity against HCC cells invitro, enhance pro-inflammatory cytokine response, andcontrol tumor burden in an in vivo NSG mouse model.

MethodsNK cells from peripheral blood mononuclear cells wereexpanded using co-culture with irradiated K562-mbIL15-41BBLstimulatory cells. NKX101 cells were generated by transductionwith a bicistronic virus encoding NKG2D, an intracellular OX40costimulatory domain, CD3ζ signaling domain, and membrane-bound IL-15, which supports prolonged cell survival andproliferation. NKX101 pro-inflammatory cytokine release inresponse to 24 hr co-culture with HCC cell lines at a 1:1 ratiowas analyzed by Luminex. The in vitro cytotoxicity of NKX101cells at 4, 24 and 48 hr endpoints was measured using a panelof HCC cell lines engineered to express luciferase. In vivoactivity of NKX101 cells was evaluated using an NSG mousexenograft tumor model in which intraperitoneal (IP) injectionof 4 x 106 luciferase expressing SNU449 HCC cells was followedone week later with IP administration of 3 x 106 NKX101 orunmodified NK cells (NT NK), and tumor growth was measuredusing IVIS bioluminescence imaging. Combination with a sub-EC50 concentration of the kinase inhibitor sorafenib, anapproved agent for HCC, was tested for additive cytotoxiceffect at low E:T ratios of NKX101 in vitro at 48 hrs. Expressionof NKG2D ligands was assessed by flow cytometry andanalyzed for linear correlation with NKX101 cytotoxicity acrossa panel of HCC cell lines.

Expanded and engineered NK cells for the treatment of hepatocellular carcinoma Sarah Wadsworth; Daofeng Liu, PhD; Denise Gonzalez; Guangnan Li, PhD; James B. Trager, PhDNkarta Therapeutics, South San Francisco, California, USA

ResultsWe demonstrate that NKX101 has dramatically improvedcytotoxicity versus NT NK cells against a panel of HCC cell linesin vitro. Co-culture of NKX101 with HCC cell lines was shown toenhance pro-inflammatory cytokine release. In an in vivo NSGmouse xenograft HCC model, NKX101 provided completetumor clearance in 4/5 mice, in contrast to stable control by NTNKs. Combination with the kinase inhibitor sorafenib providedadditive in vitro cytotoxicity with NKX101. High expression ofNKG2D ligands was observed by flow cytometry, but noindividual ligand demonstrated a correlation with NKX101cytotoxicity.

Figure 5: NKG2D ligand expression on human HCC

Figure 6: NKX101 cytotoxicity across HCC panel

Figure 7: NKX101 anti-tumor efficacy in SNU449 xenograft model

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Figure 9: NKX101 enhanced cytokine response to HCC

Figure 10: NKX101 combination with sorafenib

Figure 2: NKG2D and ligand family

Figure 3: NKX101 chimeric antigen receptor (CAR)

Figure 1: Nkarta NK cell platform

Figure 5: Expression of NKG2D ligands across a panel of human HCC cell lines by flow cytometry.

Figure 2: NKG2D is an activating receptor expressed on NK cells and subsets of T cells that binds to a family of ligands which are upregulated on the surface of cells undergoing stress, excessive proliferation, viral infection, or transformation. This results in NK-mediated cytotoxicity of these abnormal cells and the secretion of cytokines and chemokines to enhance the immune response.

Figure 3: NKX101 were generated by transduction of NK cells with a viral construct encoding a CAR including the extracellular domain of NKG2D, hinge and transmembrane regions of CD8, intracellular OX40 costimulatory domain and CD3ζ signaling domain. Membrane-bound IL-15 is co-expressed following a T2A self-cleaving peptide sequence.

Lanier; Cancer Immunol Res 2015

Figure 6: In vitro cytotoxicity of NKX101 cells at 24 hr endpoint measured using a panel of HCC cell lines engineered to express luciferase. Averages shown for 2 donors at day 30 post-expansion.

Figure 7: In vivo activity of NKX101 cells in NSG mouse HCC xenograft tumor model. Intraperitoneal (IP) injection of 4 x 106

luciferase expressing SNU449 cells was followed one week later with IP injection of 3 x 106 NKX101 or NT NK, and tumor growth was measured using IVIS bioluminescence imaging.

Figure 10: Combination with a sub-EC50 concentration of the kinase inhibitor sorafenib, an approved treatment for HCC, was tested for additive cytotoxic effect at low E:T ratios of NKX101 or NT NK cells in vitro at 48 hrs. Averages shown for 2 donors at day 30 post-expansion.

Figure 9: Luminex analysis of NKX101 pro-inflammatory cytokine release in response to 24 hr co-culture with HCC cell lines at a 1:1 E:T ratio. Averages shown for 2 donors at day 30 post-expansion.

Figure 1: Nkarta Natural Killer (NK) cell platform showing ex vivo cell expansion, activation and genetic modification procedures

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Figure 4: NKX101 enhanced cytotoxicity against HCC

Figure 4: In vitro cytotoxicity of NKX101 cells at 4 hr endpoint measured in 2 model HCC cell lines engineered to express luciferase. Averages shown for NKX101 and unmodified (NT NK) NK cells from 2 donors at day 21 post-expansion with K562-mbIL15-41BBL stimulatory cells. EC50 values calculated using Prism 4-parameter non-linear regression analysis.

ConclusionsNKX101 demonstrates improved cytokine release and cytotoxicity against multiple HCC cell lines in vitro, shows clearance of tumor burden in an in vivo HCC xenograft model, and has potential for combination therapy with current HCC approved treatment sorafenib.

Figure 8: NKX101 sensitivity vs. NKG2DL expression

Figure 8: NKX101 % cytotoxicity across a panel of HCC cell lines at an E:T ratio of 1:2 was analyzed for linear correlation with flow cytometry delta mean fluorescence intensity (dMFI) for individual NKG2D ligands. Values for dMFIs were calculated as target MFI – isotype MFI.

1Tian, Z et al. Natural killer cells in liver disease. Hepatology 2013, 57, 1654–16622 Chew, V et al. Inflammatory tumor microenvironment is associated with superior survival in hepatocellular carcinoma patients. J Hepatol. 2010 52(3):370-93 Kamimura H. Et al. Reduced NKG2D ligand expression in hepatocellular carcinoma correlates with early recurrence. J Hepatol. 2012 Feb;56(2):381-8