exploring proteins and proteomes
DESCRIPTION
Exploring Proteins and Proteomes. Genomes and Proteomes. Obtaining the protein: cell lysis and Separation. Protein Purification Techniques. Salting out Dialysis Gel Filtration Chromatography Ion-exchange Chromatography Affinity Chromatography. HPLC Gel Electrophoresis - PowerPoint PPT PresentationTRANSCRIPT
EXPLORING PROTEINS AND PROTEOMES
GENOMES AND PROTEOMES
OBTAINING THE PROTEIN: CELL LYSIS AND SEPARATION
PROTEIN PURIFICATION TECHNIQUES Salting out
Dialysis
Gel Filtration Chromatography
Ion-exchange Chromatography
Affinity Chromatography
HPLC
Gel Electrophoresis
Isoelectric Focusing
2D Gel Electrophoresis
Ultracentrifugation
SALTING OUT
DIALYSIS
GEL FILTRATION CHROMATOGRAPHY
ION-EXCHANGE CHROMATOGRAPHY
AFFINITY CHROMATOGRAPHY
ELISA
HPLC
GEL ELECTROPHORESIS
ISOELECTRIC FOCUSING
2D GEL ELECTROPHORESIS
ULTRACENTRIFUGATION
STRUCTURE DETERMINATION
AMINO ACID SEQUENCING: EDMAN DEGRADATION
BROAD CLASSIFICATION OF PROTEASE Serine Proteases
A serine residue acts as a nucleophile in the active site, facilitating the reaction
Operates via the catalytic triad His, Ser- Asp
Cystein Proteases Cys as the nucleophile and activated by a nearby basic aa Papain is an example
Aspartate Proteases Two Asp residues cleaves the peptide bond by activating a
water molecule
Metalloprotease A metallic Zn or Co is involved in the catalytic mechanism
EXAMPLES OF PROTEASES Trypsin – carboxyl side of Lys and Arg
Chymotrypsin – carboxyl side of bulky hydrophobic aa
Elastase – carboxyl side of small hydrophobic aa
Clostripain – carboxyl side of Arg
Thrombin – serine protease with specific cleavage site: Leu-Val-Pro-Arg—Gly-Ser
Carboxypeptidase A – amino side of C terminal residues of aromatic or aliphatic aa An exopeptidase
MASS SPECTROMETRY
MALDI-TOF MS
ELECTROSPRAY IONIZATION
X-RAY CRYSTALLOGRAPHY
X-RAY DIFFRACTION PATTERN OF MEVALONATE KINASE
NMR SPECTROSCOPY