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Stanford Radiology LPCH Fast Pediatric MRI Shreyas Vasanawala, MD/PhD Stanford University Lucile Packard Childrens Hospital 2013 Par Lab Celebration How fast computation is changing our clinical practice

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Page 1: Fast Pediatric MRI - Par Labparlab.eecs.berkeley.edu/sites/all/parlab/files/Fast Pediatric MRI.pdf · Fast Pediatric MRI Shreyas Vasanawala, MD/PhD Stanford University Lucile Packard

Stanford Radiology LPCH

Fast Pediatric MRI

Shreyas Vasanawala, MD/PhD

Stanford University

Lucile Packard Children’s Hospital

2013 Par Lab Celebration

How fast computation is changing our clinical practice

Page 2: Fast Pediatric MRI - Par Labparlab.eecs.berkeley.edu/sites/all/parlab/files/Fast Pediatric MRI.pdf · Fast Pediatric MRI Shreyas Vasanawala, MD/PhD Stanford University Lucile Packard

Stanford Radiology LPCH

Page 3: Fast Pediatric MRI - Par Labparlab.eecs.berkeley.edu/sites/all/parlab/files/Fast Pediatric MRI.pdf · Fast Pediatric MRI Shreyas Vasanawala, MD/PhD Stanford University Lucile Packard

Stanford Radiology LPCH

Current Solution

INVASIVE

LIMITS

ACCESS

Page 4: Fast Pediatric MRI - Par Labparlab.eecs.berkeley.edu/sites/all/parlab/files/Fast Pediatric MRI.pdf · Fast Pediatric MRI Shreyas Vasanawala, MD/PhD Stanford University Lucile Packard

Stanford Radiology LPCH

Page 5: Fast Pediatric MRI - Par Labparlab.eecs.berkeley.edu/sites/all/parlab/files/Fast Pediatric MRI.pdf · Fast Pediatric MRI Shreyas Vasanawala, MD/PhD Stanford University Lucile Packard

Stanford Radiology LPCH

Why is MRI lengthy?

• Complex protocols with multiple sets of

images in multiple planes

• Encoding spatial information takes time

Page 6: Fast Pediatric MRI - Par Labparlab.eecs.berkeley.edu/sites/all/parlab/files/Fast Pediatric MRI.pdf · Fast Pediatric MRI Shreyas Vasanawala, MD/PhD Stanford University Lucile Packard

Stanford Radiology LPCH

MRI Sampling Concept

Fourier

transform

Fourier (k)-space Image space

Page 7: Fast Pediatric MRI - Par Labparlab.eecs.berkeley.edu/sites/all/parlab/files/Fast Pediatric MRI.pdf · Fast Pediatric MRI Shreyas Vasanawala, MD/PhD Stanford University Lucile Packard

Stanford Radiology LPCH

Page 8: Fast Pediatric MRI - Par Labparlab.eecs.berkeley.edu/sites/all/parlab/files/Fast Pediatric MRI.pdf · Fast Pediatric MRI Shreyas Vasanawala, MD/PhD Stanford University Lucile Packard

Stanford Radiology LPCH

Ringl et. al.,

Radiology

Nov. 2007

8:1 compression ratio

visually indistinguishable

Page 9: Fast Pediatric MRI - Par Labparlab.eecs.berkeley.edu/sites/all/parlab/files/Fast Pediatric MRI.pdf · Fast Pediatric MRI Shreyas Vasanawala, MD/PhD Stanford University Lucile Packard

Stanford Radiology LPCH

Opportunity: Images are compressible.

Why spend time trying to collect information that is not there?

Compressed Sensing

Page 10: Fast Pediatric MRI - Par Labparlab.eecs.berkeley.edu/sites/all/parlab/files/Fast Pediatric MRI.pdf · Fast Pediatric MRI Shreyas Vasanawala, MD/PhD Stanford University Lucile Packard

Stanford Radiology LPCH

Concept

Fourier

transform

k-space Image space

Page 11: Fast Pediatric MRI - Par Labparlab.eecs.berkeley.edu/sites/all/parlab/files/Fast Pediatric MRI.pdf · Fast Pediatric MRI Shreyas Vasanawala, MD/PhD Stanford University Lucile Packard

Stanford Radiology LPCH

Teleradiology approach: First collect, then compress

Compression

101000110100 1101011 Compression

Page 12: Fast Pediatric MRI - Par Labparlab.eecs.berkeley.edu/sites/all/parlab/files/Fast Pediatric MRI.pdf · Fast Pediatric MRI Shreyas Vasanawala, MD/PhD Stanford University Lucile Packard

Stanford Radiology LPCH

Compressed Sensing

Instead: Sample less, then reconstruct.

Donoho

IEEE TIF ‘06

Candes et al.

IEEE TIF ’06

101000110100 1101011 Compression

Courtesy M. Lustig

Page 13: Fast Pediatric MRI - Par Labparlab.eecs.berkeley.edu/sites/all/parlab/files/Fast Pediatric MRI.pdf · Fast Pediatric MRI Shreyas Vasanawala, MD/PhD Stanford University Lucile Packard

Stanford Radiology LPCH

No CS CS

Miki

Lustig

2 fold

speedup, i.e.

15 second

breath-hold vs

usual 30 seconds

Page 14: Fast Pediatric MRI - Par Labparlab.eecs.berkeley.edu/sites/all/parlab/files/Fast Pediatric MRI.pdf · Fast Pediatric MRI Shreyas Vasanawala, MD/PhD Stanford University Lucile Packard

Stanford Radiology LPCH

Barrier to clinical use

Image reconstruction time

Page 15: Fast Pediatric MRI - Par Labparlab.eecs.berkeley.edu/sites/all/parlab/files/Fast Pediatric MRI.pdf · Fast Pediatric MRI Shreyas Vasanawala, MD/PhD Stanford University Lucile Packard

Stanford Radiology LPCH

Use enabled by Fast Image

Reconstruction ( < 1 minute)

Mark Murphy Kurt Keutzer

Page 16: Fast Pediatric MRI - Par Labparlab.eecs.berkeley.edu/sites/all/parlab/files/Fast Pediatric MRI.pdf · Fast Pediatric MRI Shreyas Vasanawala, MD/PhD Stanford University Lucile Packard

Stanford Radiology LPCH

No CS CS

Page 17: Fast Pediatric MRI - Par Labparlab.eecs.berkeley.edu/sites/all/parlab/files/Fast Pediatric MRI.pdf · Fast Pediatric MRI Shreyas Vasanawala, MD/PhD Stanford University Lucile Packard

Stanford Radiology LPCH

5 year old male No CS CS

7.2 x

speed

Page 18: Fast Pediatric MRI - Par Labparlab.eecs.berkeley.edu/sites/all/parlab/files/Fast Pediatric MRI.pdf · Fast Pediatric MRI Shreyas Vasanawala, MD/PhD Stanford University Lucile Packard

Stanford Radiology LPCH

Since

Last

Year:

Free-

breathing

MRI

Page 19: Fast Pediatric MRI - Par Labparlab.eecs.berkeley.edu/sites/all/parlab/files/Fast Pediatric MRI.pdf · Fast Pediatric MRI Shreyas Vasanawala, MD/PhD Stanford University Lucile Packard

Stanford Radiology LPCH

Page 20: Fast Pediatric MRI - Par Labparlab.eecs.berkeley.edu/sites/all/parlab/files/Fast Pediatric MRI.pdf · Fast Pediatric MRI Shreyas Vasanawala, MD/PhD Stanford University Lucile Packard

Stanford Radiology LPCH

Resolve cardiac motion

Joseph

Cheng

Michael

Lustig

Tao

Zhang

Page 21: Fast Pediatric MRI - Par Labparlab.eecs.berkeley.edu/sites/all/parlab/files/Fast Pediatric MRI.pdf · Fast Pediatric MRI Shreyas Vasanawala, MD/PhD Stanford University Lucile Packard

Stanford Radiology LPCH

Exam goals:

Heart anatomy

Heart Chamber volumes

Chamber wall motion

Quantification of blood flow

Page 22: Fast Pediatric MRI - Par Labparlab.eecs.berkeley.edu/sites/all/parlab/files/Fast Pediatric MRI.pdf · Fast Pediatric MRI Shreyas Vasanawala, MD/PhD Stanford University Lucile Packard

Stanford Radiology LPCH

Single 4D scan

Real-time stereoscopic

rendering/navigation of data

8 minute scan gives

same information as

conventional 90 minute

scan

Page 23: Fast Pediatric MRI - Par Labparlab.eecs.berkeley.edu/sites/all/parlab/files/Fast Pediatric MRI.pdf · Fast Pediatric MRI Shreyas Vasanawala, MD/PhD Stanford University Lucile Packard

Stanford Radiology LPCH

L1-SPIRIT ARC/GRAPPA

MP

R

Vo

lum

e-r

en

deri

ng

> 1 day reconstruction time

reduced to under 20 minutes as a

result of ParLab innovation

Page 24: Fast Pediatric MRI - Par Labparlab.eecs.berkeley.edu/sites/all/parlab/files/Fast Pediatric MRI.pdf · Fast Pediatric MRI Shreyas Vasanawala, MD/PhD Stanford University Lucile Packard

Stanford Radiology LPCH

Page 25: Fast Pediatric MRI - Par Labparlab.eecs.berkeley.edu/sites/all/parlab/files/Fast Pediatric MRI.pdf · Fast Pediatric MRI Shreyas Vasanawala, MD/PhD Stanford University Lucile Packard

Stanford Radiology LPCH

Page 26: Fast Pediatric MRI - Par Labparlab.eecs.berkeley.edu/sites/all/parlab/files/Fast Pediatric MRI.pdf · Fast Pediatric MRI Shreyas Vasanawala, MD/PhD Stanford University Lucile Packard

Stanford Radiology LPCH

Could go even faster

Page 27: Fast Pediatric MRI - Par Labparlab.eecs.berkeley.edu/sites/all/parlab/files/Fast Pediatric MRI.pdf · Fast Pediatric MRI Shreyas Vasanawala, MD/PhD Stanford University Lucile Packard

Stanford Radiology LPCH

Thank you Par Lab

Briefer, lighter, safer anesthesia

for pediatric MRI