federated sparql query processing over the web of data
TRANSCRIPT
Federated SPARQL Query Processing Over the Web of Data
Muhammad Saleem, Axel-Cyrille NgongaNgomo
Agile Knowledge Engineering and Semantic Web (AKSW), University of Leipzig,
Germany, 25/11/2014
Agenda
• SPARQL Query Federation Approaches
• SPARQL Query Federation Optimization
– Query Rewriting
– Source Selection
– Data Integration Options
– Join Order Selection
– Join Order Optimization
– Join Implementations
• Performance Metrics and Discussion
SPARQL Query Federation Approaches
• SPARQL Endpoint Federation (SEF)
• Linked Data Federation (LDF)
• Distributed Hash Tables (DHTs)
• Hybrid of SEF+LDF
SPARQL Endpoint Federation Approaches
• Most commonly used approaches
• Make use of SPARQL endpoints URLs
• Fast query execution
• RDF data needs to be exposed via SPARQL endpoints
• E.g., HiBISCus, FedX, SPLENDID, ANAPSID, LHD etc.
Linked Data Federation Approaches
• Data needs not be exposed via SPARQL endpoints
• Uses URI lookups at runtime
• Data should follow Linked Data principles
• Slower as compared to previous approaches
• E.g., LDQPS, SIHJoin, WoDQA etc.
Query federation on top of Distributed Hash Tables
• Uses DHT indexing to federate SPARQL queries
• Space efficient
• Cannot deal with whole LOD
• E.g., ATLAS
Hybrid of SEF+LDF
• Federation over SPARQL endpoints and Linked Data
• Can potentially deal with whole LOD
• E.g., ADERIS-Hybrid
SPARQL Endpoint Federation
S1 S2 S3 S4
RDF RDF RDF RDF
Parsing/Rewriting
Source Selection
Federator Optimzer
Integrator
Rewrite query and get Individual Triple Patterns
Identify capable source against Individual Triple Patterns
Generate optimized sub-query Exe. Plan
Integrate sub-queries results
Execute sub-queries
SPARQL Query Rewriting
SPARQL Query Rewriting
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page
WHERE {
?president rdf:type dbpedia:President .
?president dbpedia:nationality ?nationality.
?president dbpedia:party ?party .
?x nyt:topicPage ?page .
?x owl:sameAs ?president .
Filter (?nationality = dbpedia:United_States )
}
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page
WHERE {
?president rdf:type dbpedia:President .
?president dbpedia:nationality dbpedia:United_States .
?president dbpedia:party ?party .
?x nyt:topicPage ?page .
?x owl:sameAs ?president .
}
Try to simplify/avoid SPARQL FILTER and REGEX expressions
Source Selection
Source Selection
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
dbpedia
RDF
Source Selection Algorithm
Triple pattern-wise source selection
S1TP1 =
KEGG
RDF
ChEBI
RDF
NYT
RDF
SWDF
RDF
LMDB
RDF
Jamendo
RDF
Geo Names
RDF
DrugBank
RDF
S1 S2 S3 S4 S5 S6 S7 S8 S9
//TP1
//TP3
//TP4
//TP5
//TP2
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
dbpedia
RDF
Source Selection Algorithm
Triple pattern-wise source selection
S1TP1 =
KEGG
RDF
ChEBI
RDF
NYT
RDF
SWDF
RDF
LMDB
RDF
Jamendo
RDF
Geo Names
RDF
DrugBank
RDF
S1 S2 S3 S4 S5 S6 S7 S8 S9
//TP1
//TP3
//TP4
//TP5
//TP2
TP2 = S1
Source Selection
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
dbpedia
RDF
Source Selection Algorithm
Triple pattern-wise source selection
S1TP1 =
KEGG
RDF
ChEBI
RDF
NYT
RDF
SWDF
RDF
LMDB
RDF
Jamendo
RDF
Geo Names
RDF
DrugBank
RDF
S1 S2 S3 S4 S5 S6 S7 S8 S9
//TP1
//TP3
//TP4
//TP5
//TP2
TP2 = S1
TP3 = S1
Source Selection
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
dbpedia
RDF
Source Selection Algorithm
Triple pattern-wise source selection
S1TP1 =
KEGG
RDF
ChEBI
RDF
NYT
RDF
SWDF
RDF
LMDB
RDF
Jamendo
RDF
Geo Names
RDF
DrugBank
RDF
S1 S2 S3 S4 S5 S6 S7 S8 S9
//TP1
//TP3
//TP4
//TP5
//TP2
TP2 = S1
TP3 = S1 TP4 = S4
Source Selection
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
dbpedia
RDF
Source Selection Algorithm
Triple pattern-wise source selection
S1TP1 =
KEGG
RDF
ChEBI
RDF
NYT
RDF
SWDF
RDF
LMDB
RDF
Jamendo
RDF
Geo Names
RDF
DrugBank
RDF
S1 S2 S3 S4 S5 S6 S7 S8 S9
//TP1
//TP3
//TP4
//TP5
//TP2
TP2 = S1
TP3 = S1 TP4 = S4
TP5 = S1 S2 S4-S9
Source Selection
Total triple pattern-wise sources selected = 1+1+1+1+8 => 12
Types of Source Selection• Index-free
– Using SPARQL ASK queries– No index maintenance required– Potentially ensures result set completeness– SPARQL ASK queries can be expensive– Can make use of the cache to store recent SPARQL ASK queries results– E.g., FedX
• Index-only– Only make use of Index/data summaries– Less efficient but fast source selection– Result set completeness is not ensured– E.g., DARQ, LHD
• Hybrid– Make use of index+SPARQL ASK – Most efficient– Result set completeness is not ensured– Can make use of the cache to store recent SPARQL ASK queries results– E.g., HiBISCuS, ANAPSID, SPLENDID
Index-free Source Selection
Input: SPARQL query Q , set of all data sources DOutput: Triple pattern to relevant data sources map Mfor each triple pattern ti in SPARQL query Q
Ri = {}; // set of relevant data sources for triple pattern ti
for each data source di in Dif SPARQL ASK(di , ti) = true
Ri = Ri U {di};end if
end forM = M U {Ri};
end forreturn M What is the total number of SPARQL ASK requests used?
total number of triple patterns * total number of data sources
Index-free Source Selection
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
dbpedia
RDF
Source Selection Algorithm
Triple pattern-wise source selection
S1TP1 =
KEGG
RDF
ChEBI
RDF
NYT
RDF
SWDF
RDF
LMDB
RDF
Jamendo
RDF
Geo Names
RDF
DrugBank
RDF
S1 S2 S3 S4 S5 S6 S7 S8 S9
//TP1
//TP3
//TP4
//TP5
//TP2
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
dbpedia
RDF
Source Selection Algorithm
Triple pattern-wise source selection
S1TP1 =
KEGG
RDF
ChEBI
RDF
NYT
RDF
SWDF
RDF
LMDB
RDF
Jamendo
RDF
Geo Names
RDF
DrugBank
RDF
S1 S2 S3 S4 S5 S6 S7 S8 S9
//TP1
//TP3
//TP4
//TP5
//TP2
TP2 = S1
Index-free Source Selection
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
dbpedia
RDF
Source Selection Algorithm
Triple pattern-wise source selection
S1TP1 =
KEGG
RDF
ChEBI
RDF
NYT
RDF
SWDF
RDF
LMDB
RDF
Jamendo
RDF
Geo Names
RDF
DrugBank
RDF
S1 S2 S3 S4 S5 S6 S7 S8 S9
//TP1
//TP3
//TP4
//TP5
//TP2
TP2 = S1
TP3 = S1
Index-free Source Selection
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
dbpedia
RDF
Source Selection Algorithm
Triple pattern-wise source selection
S1TP1 =
KEGG
RDF
ChEBI
RDF
NYT
RDF
SWDF
RDF
LMDB
RDF
Jamendo
RDF
Geo Names
RDF
DrugBank
RDF
S1 S2 S3 S4 S5 S6 S7 S8 S9
//TP1
//TP3
//TP4
//TP5
//TP2
TP2 = S1
TP3 = S1 TP4 = S4
Index-free Source Selection
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
dbpedia
RDF
Source Selection Algorithm
Triple pattern-wise source selection
S1TP1 =
KEGG
RDF
ChEBI
RDF
NYT
RDF
SWDF
RDF
LMDB
RDF
Jamendo
RDF
Geo Names
RDF
DrugBank
RDF
S1 S2 S3 S4 S5 S6 S7 S8 S9
//TP1
//TP3
//TP4
//TP5
//TP2
TP2 = S1
TP3 = S1 TP4 = S4
TP5 = S1 S2
Index-free Source Selection
Total number of SPARQL ASK requests used = 45Total triple pattern-wise sources selected = 12
S4-S9
Index-only Source Selection (LHD)Input: SPARQL query Q , set of all data sources D, data sources index I storing all distinct predicates for all data sources in DOutput: Triple pattern to relevant data sources map Mfor each triple pattern ti in SPARQL query QRi = {}; // set of relevant data sources for triple pattern ti
p = Pred(ti) // predicate of ti
if (bound (p)) Ri = Lookup (I, p) // index lookup for predicate of ti
elseRi = D ; // all data sources are relevant
end ifM = M U {Ri} ;
end forreturn M Why it is the less efficient approach (i.e., greatly overestimate relevant data sources)?
• Source selection is only based on predicate of triple patterns• Simply select all data sources for triple patterns having unbound predicates
Index-only Source Selection
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
dbpedia
RDF
Source Selection Algorithm
Triple pattern-wise source selection
S1-S9TP1 =
KEGG
RDF
ChEBI
RDF
NYT
RDF
SWDF
RDF
LMDB
RDF
Jamendo
RDF
Geo Names
RDF
DrugBank
RDF
S1 S2 S3 S4 S5 S6 S7 S8 S9
//TP1
//TP3
//TP4
//TP5
//TP2
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
dbpedia
RDF
Source Selection Algorithm
Triple pattern-wise source selection
TP1 =
KEGG
RDF
ChEBI
RDF
NYT
RDF
SWDF
RDF
LMDB
RDF
Jamendo
RDF
Geo Names
RDF
DrugBank
RDF
S1 S2 S3 S4 S5 S6 S7 S8 S9
//TP1
//TP3
//TP4
//TP5
//TP2
TP2 = S1S1-S9
Index-only Source Selection
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
dbpedia
RDF
Source Selection Algorithm
Triple pattern-wise source selection
TP1 =
KEGG
RDF
ChEBI
RDF
NYT
RDF
SWDF
RDF
LMDB
RDF
Jamendo
RDF
Geo Names
RDF
DrugBank
RDF
S1 S2 S3 S4 S5 S6 S7 S8 S9
//TP1
//TP3
//TP4
//TP5
//TP2
TP2 = S1
TP3 = S1
Index-only Source Selection
S1-S9
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
dbpedia
RDF
Source Selection Algorithm
Triple pattern-wise source selection
TP1 =
KEGG
RDF
ChEBI
RDF
NYT
RDF
SWDF
RDF
LMDB
RDF
Jamendo
RDF
Geo Names
RDF
DrugBank
RDF
S1 S2 S3 S4 S5 S6 S7 S8 S9
//TP1
//TP3
//TP4
//TP5
//TP2
TP2 = S1
TP3 = S1 TP4 = S4
Index-only Source Selection
S1-S9
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
dbpedia
RDF
Source Selection Algorithm
Triple pattern-wise source selection
TP1 =
KEGG
RDF
ChEBI
RDF
NYT
RDF
SWDF
RDF
LMDB
RDF
Jamendo
RDF
Geo Names
RDF
DrugBank
RDF
S1 S2 S3 S4 S5 S6 S7 S8 S9
//TP1
//TP3
//TP4
//TP5
//TP2
TP2 = S1
TP3 = S1 TP4 = S4
TP5 = S1 S2 S4-S9
Index-only Source Selection
Total number of SPARQL ASK requests used = 0Total triple pattern-wise sources selected = 20
S1-S9
Hybrid Source SelectionInput: SPARQL query Q , set of all data sources D, data sources index I storing all distinct predicates for all data sources in DOutput: Triple pattern to relevant data sources map Mfor each triple pattern ti in SPARQL query Q
Ri = {}; // set of relevant data sources for triple pattern ti
s = Subj(ti) , p = Pred(ti) , o = Obj(ti) ; // subject, predicate, and object of ti
if (!bound (p) || bound (s) || bound (o) ) for each data source di in D
if SPARQL ASK(di , ti) = trueRi = Ri U {di};
end ifend for
else Ri = Lookup (I, p) // index lookup for predicate of ti
end ifM = M U {Ri}
end forreturn M
What is the total number of SPARQL ASK requests used?
total number of triple patterns with bound subject or bound object or unbound predicate * total number of data sources
Hybrid Source Selection
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
dbpedia
RDF
Source Selection Algorithm
Triple pattern-wise source selection
S1TP1 =
KEGG
RDF
ChEBI
RDF
NYT
RDF
SWDF
RDF
LMDB
RDF
Jamendo
RDF
Geo Names
RDF
DrugBank
RDF
S1 S2 S3 S4 S5 S6 S7 S8 S9
//TP1
//TP3
//TP4
//TP5
//TP2
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
dbpedia
RDF
Source Selection Algorithm
Triple pattern-wise source selection
S1TP1 =
KEGG
RDF
ChEBI
RDF
NYT
RDF
SWDF
RDF
LMDB
RDF
Jamendo
RDF
Geo Names
RDF
DrugBank
RDF
S1 S2 S3 S4 S5 S6 S7 S8 S9
//TP1
//TP3
//TP4
//TP5
//TP2
TP2 = S1
Hybrid Source Selection
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
dbpedia
RDF
Source Selection Algorithm
Triple pattern-wise source selection
S1TP1 =
KEGG
RDF
ChEBI
RDF
NYT
RDF
SWDF
RDF
LMDB
RDF
Jamendo
RDF
Geo Names
RDF
DrugBank
RDF
S1 S2 S3 S4 S5 S6 S7 S8 S9
//TP1
//TP3
//TP4
//TP5
//TP2
TP2 = S1
TP3 = S1
Hybrid Source Selection
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
dbpedia
RDF
Source Selection Algorithm
Triple pattern-wise source selection
S1TP1 =
KEGG
RDF
ChEBI
RDF
NYT
RDF
SWDF
RDF
LMDB
RDF
Jamendo
RDF
Geo Names
RDF
DrugBank
RDF
S1 S2 S3 S4 S5 S6 S7 S8 S9
//TP1
//TP3
//TP4
//TP5
//TP2
TP2 = S1
TP3 = S1 TP4 = S4
Hybrid Source Selection
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
dbpedia
RDF
Source Selection Algorithm
Triple pattern-wise source selection
S1TP1 =
KEGG
RDF
ChEBI
RDF
NYT
RDF
SWDF
RDF
LMDB
RDF
Jamendo
RDF
Geo Names
RDF
DrugBank
RDF
S1 S2 S3 S4 S5 S6 S7 S8 S9
//TP1
//TP3
//TP4
//TP5
//TP2
TP2 = S1
TP3 = S1 TP4 = S4
TP5 = S1 S2
Total number of SPARQL ASK requests used = 18Total triple pattern-wise sources selected = 12
S4-S9
Anything still needs to be improved?
Hybrid Source Selection
Source Selection
• Triple pattern-wise source selection– Ensures 100% recall– Can over-estimate capable sources– Can be expensive, e.g., total number of SPARQL ASK
requests used– Performed by FedX, SPLENDID, LHD, DARQ, ADERIS etc.
• Join-aware triple-pattern wise source selection– Ensures 100% recall– May selects optimal/close to optimal capable sources– Can be expensive, e.g., total number of SPARQL ASK
requests used– Can significantly reduce the query execution time– Performed by ANAPSID, HiBISCuS
HiBISCuS: Hypergraph-Based Source Selection for SPARQL Endpoint Federation
• Hybrid source selection
• Join-aware triple-pattern wise source selection
• Makes use of the hypergraph representation of SPARQL queries
• Makes use of the URI authorities
• Makes use of the cache to store recent SPARQL ASK queries results
Motivation
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
dbpedia
RDF
Source Selection Algorithm
Triple pattern-wise source selection
S1TP1 =
KEGG
RDF
ChEBI
RDF
NYT
RDF
SWDF
RDF
LMDB
RDF
Jamendo
RDF
Geo Names
RDF
DrugBank
RDF
S1 S2 S3 S4 S5 S6 S7 S8 S9
//TP1
//TP3
//TP4
//TP5
//TP2
Motivation
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
dbpedia
RDF
Source Selection Algorithm
Triple pattern-wise source selection
S1TP1 =
KEGG
RDF
ChEBI
RDF
NYT
RDF
SWDF
RDF
LMDB
RDF
Jamendo
RDF
Geo Names
RDF
DrugBank
RDF
S1 S2 S3 S4 S5 S6 S7 S8 S9
//TP1
//TP3
//TP4
//TP5
//TP2
TP2 = S1
Motivation
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
dbpedia
RDF
Source Selection Algorithm
Triple pattern-wise source selection
S1TP1 =
KEGG
RDF
ChEBI
RDF
NYT
RDF
SWDF
RDF
LMDB
RDF
Jamendo
RDF
Geo Names
RDF
DrugBank
RDF
S1 S2 S3 S4 S5 S6 S7 S8 S9
//TP1
//TP3
//TP4
//TP5
//TP2
TP2 = S1
TP3 = S1
Motivation
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
dbpedia
RDF
Source Selection Algorithm
Triple pattern-wise source selection
S1TP1 =
KEGG
RDF
ChEBI
RDF
NYT
RDF
SWDF
RDF
LMDB
RDF
Jamendo
RDF
Geo Names
RDF
DrugBank
RDF
S1 S2 S3 S4 S5 S6 S7 S8 S9
//TP1
//TP3
//TP4
//TP5
//TP2
TP2 = S1
TP3 = S1 TP4 = S4
Motivation
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
dbpedia
RDF
Source Selection Algorithm
Triple pattern-wise source selection
S1TP1 =
KEGG
RDF
ChEBI
RDF
NYT
RDF
SWDF
RDF
LMDB
RDF
Jamendo
RDF
Geo Names
RDF
DrugBank
RDF
S1 S2 S3 S4 S5 S6 S7 S8 S9
//TP1
//TP3
//TP4
//TP5
//TP2
TP2 = S1
TP3 = S1 TP4 = S4
TP5 = S1 S2 S4 S5
S6 S7 S8 S9
Motivation
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
dbpedia
RDF
Source Selection Algorithm
Triple pattern-wise source selection
S1TP1 =
KEGG
RDF
ChEBI
RDF
NYT
RDF
SWDF
RDF
LMDB
RDF
Jamendo
RDF
Geo Names
RDF
DrugBank
RDF
S1 S2 S3 S4 S5 S6 S7 S8 S9
//TP1
//TP3
//TP4
//TP5
//TP2
TP2 = S1
TP3 = S1 TP4 = S4
TP5 = S1 S2 S4 S5
S6 S7 S8 S9
Total triple pattern-wise selected sources = 12Total SPARQL ASK queries : 9*5 = 45
Motivation
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
dbpedia
RDF
Source Selection Algorithm
Triple pattern-wise source selection
S1TP1 =
KEGG
RDF
ChEBI
RDF
NYT
RDF
SWDF
RDF
LMDB
RDF
Jamendo
RDF
Geo Names
RDF
DrugBank
RDF
S1 S2 S3 S4 S5 S6 S7 S8 S9
//TP1
//TP3
//TP4
//TP5
//TP2
TP2 = S1
TP3 = S1 TP4 = S4
TP5 = S1 S2 S4 S5
S6 S7 S8 S9
Total triple pattern-wise selected sources = 12Total SPARQL ASK queries : 9*5 = 45
Motivation
FedBench (LD3): Return for all US presidents their party membership and news pages about them.
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
dbpedia
RDF
Source Selection Algorithm
Triple pattern-wise source selection
S1TP1 =
TP3 = S1
Optimal triple pattern-wise selected sources 5
KEGG
RDF
ChEBI
RDF
NYT
RDF
SWDF
RDF
LMDB
RDF
Jamendo
RDF
Geo Names
RDF
DrugBank
RDF
S1 S2 S3 S4 S5 S6 S7 S8 S9
//TP1
//TP3
//TP4
//TP5
//TP2
TP2 = S1
TP4 = S4
TP5 = S1 S2 S4 S5
S6 S7 S8 S9
Problem Statement
• An overestimation of triple pattern-wise source selection can be expensive
– Resources are wasted
– Query runtime is increased
– Extra traffic is generated
• How do we perform join-aware triple pattern wise source selection in time efficient way?
HiBISCuS: Key Concept
• Makes use of the URI’s authorities
http://dbpedia.org/ontology/partyScheme Authority Path
For URI details: http://tools.ietf.org/html/rfc3986
HiBISCuS: SPARQL Query as HypergraphSELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
?president
rdf:typedbpedia:President
HiBISCuS: SPARQL Query as HypergraphSELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
?president
rdf:typedbpedia:President
dbpedia:United_S
tates
dbpedia:nationality
HiBISCuS: SPARQL Query as HypergraphSELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
?president
rdf:typedbpedia:President
dbpedia:United_S
tates
dbpedia:nationality
dbpedia:party
?party
HiBISCuS: SPARQL Query as HypergraphSELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
?president
rdf:typedbpedia:President
dbpedia:United_S
tates
dbpedia:nationality
dbpedia:party
?party
?x
nyt:topicPage
?page
HiBISCuS: SPARQL Query as HypergraphSELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
?president
rdf:typedbpedia:President
dbpedia:United_S
tates
dbpedia:nationality
dbpedia:party
?party
?x
nyt:topicPage
?page
owl:SameAs
HiBISCuS: SPARQL Query as HypergraphSELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
?president
rdf:typedbpedia:President
dbpedia:United_S
tates
dbpedia:nationality
?x
owl:SameAs
dbpedia:party
?party
nyt:topicPage
?page
Star simple hybrid Tail of hyperedge
HiBISCuS: Data Summaries
[] a ds:Service ; ds:endpointUrl <http://dbpedia.org/sparql> ; ds:capability [
ds:predicate dbpedia:party ; ds:sbjAuthority <http://dbpedia.org/> ; ds:objAuthority <http://dbpedia.org/> ;
] ; ds:capability [
ds:predicate rdf:type ; ds:sbjAuthority <http://dbpedia.org/> ; ds:objAuthority owl:Thing, dbpedia:President; #we store all distinct
classes ] ;
ds:capability [ds:predicate dbpedia:postalCode ; ds:sbjAuthority <http://dbpedia.org/> ; #No objAuthority as the object value for dbpedia:postalCode is string
] ;
HiBISCuS: Triple Pattern-wise Source Selection
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
?president
rdf:typedbpedia:President
dbpedia:United_States
dbpedia:nationality
?x
owl:SameAs
dbpedia:party ?party
nyt:topicPage
?page
dbpedia KEGG NYT SWDF LMDB Geo DrgBnk Jamendo
HiBISCuS: Triple Pattern-wise Source Pruning
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
?president
rdf:typedbpedia:President
dbpedia:United_States
dbpedia:nationality
?x
owl:SameAs
dbpedia:party ?party
nyt:topicPage
?page
dbpedia KEGG NYT SWDF
DrgBnk LMDB Geo Jamendo
Obj.auth.
dbpedia
Sbj. auth.
KEGG
Sbj. auth.
NYT
Sbj. auth.
SWDF
Sbj. auth.
LMDB
Sbj. auth.
Geo
Sbj. auth.
DrgBnk
Sbj. auth.
Jamendo
Sbj. auth.
HiBISCuS: Triple Pattern-wise Source Pruning
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
?president
rdf:typedbpedia:President
dbpedia:United_States
dbpedia:nationality
?x
owl:SameAs
dbpedia:party ?party
nyt:topicPage
?page
dbpedia
Sbj. auth.
KEGG
Sbj. auth.
NYT
Sbj. auth.
SWDF
Sbj. auth.
LMDB
Sbj. auth.
Geo
Sbj. auth.
DrgBnk
Sbj. auth.
Jamendo
Sbj. auth.
dbpedia KEGG NYT SWDF
DrgBnk LMDB Geo Jamendo
Obj.auth.
HiBISCuS: Triple Pattern-wise Source Pruning
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
?president
rdf:typedbpedia:President
dbpedia:United_States
dbpedia:nationality
?x
owl:SameAs
dbpedia:party ?party
nyt:topicPage
?page
dbpedia KEGG NYT SWDF
DrgBnk LMDB Geo Jamendo
Obj.auth.
HiBISCuS: Triple Pattern-wise Source Pruning
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
?president
rdf:typedbpedia:President
dbpedia:United_States
dbpedia:nationality
?x
owl:SameAs
dbpedia:party ?party
nyt:topicPage
?page
NYTObj. auth.
HiBISCuS: Triple Pattern-wise Source Pruning
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
?president
rdf:typedbpedia:President
dbpedia:United_States
dbpedia:nationality
?x
owl:SameAs
dbpedia:party ?party
nyt:topicPage
?page
NYTObj. auth.
HiBISCuS: Triple Pattern-wise Source Pruning
SELECT ?president ?party ?page WHERE {?president rdf:type dbpedia:President .?president dbpedia:nationality dbpedia:United_States .?president dbpedia:party ?party .?x nyt:topicPage ?page .?x owl:sameAs ?president .}
?president
rdf:typedbpedia:President
dbpedia:United_States
dbpedia:nationality
?x
owl:SameAs
dbpedia:party ?party
nyt:topicPage
?page
Total triple pattern-wise selected sources = 5Total SPARQL ASK queries : 0
Data Integration Options
Complete Local Integration• Triple patterns are individually and completely
evaluated against every endpoint
• Triple pattern results are locally integrated using different join techniques, e.g., NLJ, Hash Join etc.
• Less efficient if query contains common predicates such rdf:type and owl:sameAs
• Large amount of potentially irrelevant intermediate results retrieval
Iterative Integration• Evaluate query iteratively pattern by pattern
• Start with a single triple pattern
• Substitute mappings from previous triple pattern in the subsequent evaluation
• Evaluate query in a NLJ fashion
• NLJ can cause many remote requests
• Block NLJ fashion minimize the remote requests
Join Order Selection
Join Order Selection• Left-deep trees
– Joins take place in a left-to-right sequential order – Result of the join is used as an outer input for the next join– Used in FedX, DARQ
• Right-deep trees– Joins take place in a right-to-left sequential order – Result of the join is used as an inner input for the next join
• Bushy trees– Joins take place in sub-tress both on left and right sides– Used in ANAPSID
• Dynamic programming– Used in SPLENDID
Join Order Selection ExampleCompute Micronutrients using Drugbank and KEGG
SELECT ?drug ?title WHERE {
?drug drugbank:drugCategory drugbank-cat:micronutrient. // TP1
?drug drugbank:casRegistryNumber ?id . // TP2
?keggDrug rdf:type kegg:Drug . // TP3
?keggDrug bio2rdf:xRef ?id . // TP4
?keggDrug dc:title ?title . // TP5
}
67
𝜋 ? 𝑑𝑟𝑢𝑔, ? 𝑡𝑖𝑡𝑙𝑒
TP1 TP2
TP3
TP4
TP5
Left-deep tree
𝜋 ? 𝑑𝑟𝑢𝑔, ? 𝑡𝑖𝑡𝑙𝑒
TP1 TP2
TP3
TP4
TP5
Right-deep tree𝜋 ? 𝑑𝑟𝑢𝑔, ? 𝑡𝑖𝑡𝑙𝑒
TP1 TP2
Bushy tree
TP3 TP5
TP4
Goal: Execute smallest cardinality joins first
Join Order Optimization
Join Order Optimization• Exclusive Groups
– Group triple patterns with the same relevant data source – Evaluation in a single (remote) sub-query– Push join to the data source, i.e., endpoint
• Variable count-heuristic– Iteratively determine the join order based on free variables
count of triple patterns and groups– Consider “resolved ” variable mappings from earlier iteration
• Using Selectivities– Store distinct predicates, avg. subject selectivities , and avg.
object selectivities for each predicate in index– Use the predicate count, avg. subject selectivities , and avg.
object selectivities to estimate the join cardinality
Exclusive Groups
SELECT ?President ?Party ?TopicPage WHERE {
?President rdf:type dbpedia-yago:PresidentsOfTheUnitedStates .
?President dbpedia:party ?Party .
?nytPresident owl:sameAs ?President .
?nytPresident nytimes:topicPage ?TopicPage .
}
Source Selection@ DBpedia
@ DBpedia
@ DBpedia, NYTimes@ NYTimes
Exclusive Group
Advantage:
Delegate joins to the endpoint by forming exclusive groups (i.e. executing the respective patterns in a single subquery)
70
Exclusive Groups Join Order Optimization 2 Unoptimized Internal Representation
Compute Micronutrients using Drugbank and KEGG
SELECT ?drug ?title WHERE {
?drug drugbank:drugCategory drugbank-cat:micronutrient .
?drug drugbank:casRegistryNumber ?id .
?keggDrug rdf:type kegg:Drug .
?keggDrug bio2rdf:xRef ?id .
?keggDrug dc:title ?title .
}
1 SPARQL Query
3 Optimized Internal Representation
4x Local Join=
4x NLJ
Exlusive Group Remote Join
71
[] a sd:Service ; sd:endpointUrl <http://localhost:8890/sparql> ; sd:capability [
sd:predicate diseasome:name ; sd:totalTriples 147 ; // Total number of triple patterns with predicate value sd:predicatesd:avgSbjSel ``0.0068'' ; // 1/ distinct subjects with predicate value sd:predicatesd:avgObjSel ``0.0069'' ; // 1/ distinct Objects with predicate value sd:predicate
] ; sd:capability [
sd:predicate diseasome:chromosomalLocation ; sd:totalTtriples 160 ; sd:avgSbjSel ``0.0062'' ; sd:avgObjSel ``0.0072'' ;
] ;
S1 P O1 .S1 P O2 . S2 P O1 . S3 P O2 .
totalTriples = 4avgSbjSel(p) = 1/3 avgObjSel(p) =1/2
Selectivity Based Join Order Optimization
Selectivity Based Join Order Optimization
• Triple pattern cardinality
• Join Cardinality
𝑝 = pred(tp) , 𝑇 = Total triple having predicate 𝑝
𝐶(𝑡𝑝) =
𝑇 𝑖𝑓 𝑛𝑒𝑖𝑡ℎ𝑒𝑟 𝑠𝑢𝑏𝑗𝑒𝑐𝑡 𝑛𝑜𝑟 𝑜𝑏𝑗𝑒𝑐𝑡 𝑖𝑠 𝑏𝑜𝑢𝑛𝑑
𝑇 × 𝑎𝑣𝑔𝑆𝑏𝑗𝑆𝑒𝑙 𝑝 𝑖𝑓 𝑠𝑢𝑏𝑗𝑒𝑐𝑡 𝑖𝑠 𝑏𝑜𝑢𝑛𝑑
𝑇 × 𝑎𝑣𝑔𝑂𝑏𝑗𝑆𝑒𝑙 𝑝 𝑖𝑓𝑜𝑏𝑗𝑒𝑐𝑡 𝑖𝑠 𝑏𝑜𝑢𝑛𝑑
𝐶(𝐽 𝑡𝑝1, 𝑡𝑝2 ) =
𝐶 𝑡𝑝1 × 𝐶 𝑡𝑝2 × 𝑎𝑣𝑔𝑃𝑟𝑒𝑑𝐽𝑜𝑖𝑛𝑆𝑒𝑙 𝑡𝑝1 × 𝑎𝑣𝑔𝑃𝑟𝑒𝑑𝐽𝑜𝑖𝑛𝑆𝑒𝑙 𝑡𝑝2 𝑖𝑓 𝑝 − 𝑝 𝑗𝑜𝑖𝑛
𝐶 𝑡𝑝1 × 𝐶 𝑡𝑝2 × 𝑎𝑣𝑔𝑆𝑏𝑗𝐽𝑜𝑖𝑛𝑆𝑒𝑙 𝑡𝑝1 × 𝑎𝑣𝑔𝑆𝑏𝑗𝐽𝑜𝑖𝑛𝑆𝑒𝑙 𝑡𝑝2 𝑖𝑓 𝑠 − 𝑠 𝑗𝑜𝑖𝑛
𝐶 𝑡𝑝1 × 𝐶 𝑡𝑝2 × 𝑎𝑣𝑔𝑆𝑏𝑗𝐽𝑜𝑖𝑛𝑆𝑒𝑙 𝑡𝑝1 × 𝑎𝑣𝑔𝑂𝑏𝑗𝐽𝑜𝑖𝑛𝑆𝑒𝑙 𝑡𝑝2 𝑖𝑓 𝑠 − 𝑜 𝑗𝑜𝑖𝑛
How to calculate avgPredJoinSel, avgSbjJoinSel, and avgObjJoinSel?
DARQ selected 0.5 as the avgJoinSel value for all joins
Join Implementations
Join Implementations• Bound Joins
– Start with a single triple pattern (lowest cardinality)– Substitute mappings from previous triple pattern in the
subsequent evaluation– Bound Joins in NLJ fashion
• Execute bound joins in nested loop join fashion• Too many remote requests
– Bound Joins in Block NLJ fashion• Execute bound joins in block nested loop join fashion• Make use of SPARQL UNION construct• Remote requests are reduced by the block size
• Other Join techniques– E.g, Hash Joins
Bound Joins in Block NLJ
SELECT ?President ?Party ?TopicPage WHERE {
?President rdf:type dbpedia:PresidentsOfTheUnitedStates .
?President dbpedia:party ?Party .
?nytPresident owl:sameAs ?President .
?nytPresident nytimes:topicPage ?TopicPage .
}
Assume that the following intermediate results have been computed as input for the last triple pattern
Block Input“Barack Obama”“George W. Bush”…
Before (NLJ)SELECT ?TopicPage WHERE { “Barack Obama” nytimes:topicPage ?TopicPage }SELECT ?TopicPage WHERE { “George W. Bush” nytimes:topicPage ?TopicPage }…
Now: Evaluation in a single remote request using a SPARQL UNION construct + local post processing (SPARQL 1.0)
76
Parallelization and Pipelining• Execute sub-queries concurrently on different data
sources
• Multithreaded worker pool to execute the joins and UNION operators in parallel
• Pipelining approach for intermediate results
• See FedX and LHD implementations
Performance Metrics and Discussion
Performance Metrics• Efficient source selection in terms of
– Total triple pattern-wise sources selected
– Total number of SPARQL ASK requests used during source selection
– Source selection time
• Query execution time
• Results completeness and correctness
• Number of remote requests during query execution
• Index compression ratio (1- index size/datadump size)
• See https://code.google.com/p/bigrdfbench/
Evaluation Setup
• Local dedicated network
• Local SPARQL endpoints (One per machine)
• Run each query 10 times and present the average results
• Statistically analyzed the results, e.g., Wilcoxon signed rank test, student T-test
SPARQL Query Federation Engines• FedX
• SPLENDID
• HiBISCuS+FedX
• HiBISCuS+SPLENDID
• ANAPSID
• LHD
• DARQ
81
AKSW SPARQL Federation Publications• HiBISCuS: Hypergraph-Based Source Selection for SPARQL Endpoint Federation by Muhammad
Saleem and Axel-Cyrille Ngonga Ngomo, in (ESWC, 2014)• DAW: Duplicate-AWare Federated Query Processing over the Web of Data by Muhammad
Saleem Axel-Cyrille Ngonga Ngomo, Josiane Xavier Parreira , Helena Deus , and Manfred Hauswirth, in (ISWC 2013).
• TopFed: TCGA Tailored Federated Query Processing and Linking to LOD by Muhammad Saleem, Shanmukha Sampath , Axel-Cyrille Ngonga Ngomo , Aftab Iqbal, Jonas Almeida , and Helena F. Deus , in (Journal of Biomedical Semantics, 2014).
• A Fine-Grained Evaluation of SPARQL Endpoint Federation Systems by Muhammad Saleem, YasarKhan, Ali Hasnain, Ivan Ermilov, and Axel-Cyrille Ngonga Ngomo , in (Semantic Web Journal, 2014)
• BigRDFBench: A Billion Triples Benchmark for SPARQL Query Federation by Muhammad Saleem, Ali Hasnain, Axel-Cyrille Ngonga Ngomo , in (submitted WWW, 2015).
• SAFE: Policy-Aware SPARQL Query Federation Over RDF Data CubesBy Yasar Khan, Muhammed Saleem , Aftab Iqbal, Muntazir Mehdi, Aidan Hogan, Panagiotis Hasapis, Axel-Cyrille Ngonga Ngomo, Stefan Decker, and Ratnesh Sahay, in (SWAT4LS, 2014)
• QFed: Query Set For Federated SPARQL Query Benchmark by Nur Aini Rakhmawati, Sarasi lithsena, Muhammad Saleem , Stefan Decker, in (iiWAS, 2014)
82
Thanks
{saleem,ngonga}@informatik.uni-leipzig.deAKSW, University of Leipzig, Germany