~ferences - shodhganga : a reservoir of indian...

~ferences

Cliapter 7

Chapter 7

References

~ferences

Abe H, Urao T, Ito T, Seki M, Shinozaki K, Yamaguchi-Shinozaki K (2003)

Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as

transcriptional activators in abscisic acid signaling. Plant Cell 15: 63-

78

Abebe T, Arran C, Martin GB, Cushman JC (2003) Tolerance of mannitol

accumulating transgenic wheat to water stress and salinity. Plant

Physiol. 23: 265-274

Alex LA, Simon Ml (1994) Protein histidine kinases and signal transduction in

prokaryotes and eukaryotes. Trends Genet. 10: 133-138

Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local

alignment search tool. J. Mol. Bioi. 215: 403-41 0

Amtmann A, Bohnert HJ, Bressan RA (2005) Abiotic stress and plant

genome evolution-search for new models. Plant Physiol. 138: 127-130

Anderson LE, Advani VR (1970) Chloroplast and cytoplasmic enzymes.

Three distinct isoenzymes associated with the reductive pentose

phosphate cycle. Plant Physiol. 45: 583-585

Anderson LE, Carol AA, Bryant JA (2003) Calvin cycle enzymes in the

nucleus. Physiol. Biochem. Plant 35: 309-316

Apse MP, Ahron GS, Snedden WA. Blumwald E (1999) Salt toleramce

conferred by overexpression of a vacuolar Na+JH+ antiport in

Arabidopsis. Science 285: 1256-1258

Arnon D (1949) Copper enzymes in isolated chloroplasts. Polyphenoloxidase

in Beta vulgaris. Plant Physiol. 24: 1-15

189

Cliapter 7 ~ferences

Arumugam K, Lafitte R, Chen J, Bennet J (2005) Expression microarrays and

their application in drought stress research. Field Crops Research 5:

256-262

Banks RD, Blake CCF, Evans PR, Haser R, Rice DW, Hardy GW, Merrett M,

Phillips AW (1979) Sequence, structure and activity of

phosphoglycerate kinase: a possible hinge-bending enzyme. Nature

279: 773-777

Bates LS (1973) Rapid determination of free proline for water stress studies.

Plant Soil 39: 205-207

Batista R, Saibo M, Lourenco T, Oliveira M M (2008) Microarray analysis

reveal that plant mutagenesis may induce more transcriptomic

changes than transgene insertion. Proc. Nati. Acad. Sci. USA. 1 05:

3640-3645

Baulcombe DC (2004) RNA silencing in plants. Nature431: 356-363

Blumwald E (2000) Sodium transport and salt tolerance in plants. Curr. Opin.

Cell Bioi. 12: 431-434

Blumwald E, Grover A (2006) Salt tolerance. In: Plant Biotechnology: Current

and Future Uses of Genetically Modified Crops. Halford NG (Ed) John

Wiley & Sons Ltd., U.K. pp 206-224

Borkird C, Simoens C, Villarroel R, Montagu MV (1991) Gene expression

associated with water stress adaptation of rice cells and identification

of two genes as hsp 70 and ubiquitin. Plant Physiol. 82: 449-457

Boudsocq M, Lauriere C (2005) Osmotic signaling in plants. Multiple

pathways mediated by emerging kinase families. Plant Physiol. 138:

1185-1194

Bradford M (1976) A rapid and sensitive method for quantitation of

microgram quantities of protein utilizing the principle of protein-dye

binding. Anal. Biochem. 72: 248-254

Brewster JL, Valoir DT, Dwyer ND, Winter E, Gustin MC (1993) An

osmosensing signal transduction pathway in yeast. Science 259:

1760-1763

190

Cliapter 7 <R§jerences

Brice DC, Bryant JA, Dambrauskas G, Drury SC, Littlechild JA (2004)

Cloning and expression of cytosolic phosphoglycerate kinase from pea

(Pisum sativum L.). J. Expt. Bot. 55: 955-956

Brookes P, Barfoot GB (2003) GM rice, will this the way for global

acceptance of GM crop technology. ISAAA Briefs No. 28. ISAAA,

Ithaca, NY

Bryant JA, Brice DC, Fitchett PN, Anderson LE (2000) A novel DNA-binding

protein associated with DNA polymerase- in pea stimulates

polymerase activity on infrequently primed templates. J. Expt. Bot. 51:

1945-1947

Carpentier SC, Witters E, Laukens K, Van Onckelen H, Swennen R, Panis B

(2007) Banana (Musa spp.) as a model to study the meristem

proteome: acclimation to osmotic stress. Proteomics 7: 92-105

Catlett NL, Yoder OC, Turgeon BG (2003) Whole-Genome Analysis of Two

Component Signal Transduction Genes in Fungal Pathogens.

Eukaryotic Cell 6: 1151-1161

Cavell S, Scopes RK (1976) Isolation and Characterisation of the

'Photosynthetic' Phosphoglycerate Kinase from Beta vulgaris. Eur. J.

Biochem. 63: 483-490

Chang C, Kwok SF, Bleecker AB, Meyerowitz EM (1993) Arabidopsis

ethylene-response gene ETR1: similarity of product to two-component

regulators. Science 262: 539-544

Chao S, Raines CA, Longstaff M, Sharp PJ, Gal, MD, Dyer TA (1989)

Chromosomal location and copy number in wheat and some of its

close relatives of genes for enzymes involved in photosynthesis. Mol.

Gen. Genet. 218: 423-430

Chefdor F, Be'ne'detti H, Depierreux C, Delmotte F, Morabito D, Carpin S

(2006) Osmotic stress sensing in Populus: Components identification

of a phosphorelay system. FEBS Letters 580: 77-81

191

Cfiapter 7 CJ<§jerences

Chinnusamy V, Schumaker K, Zhu JK (2004) Molecular genetic perspectives

on cross-talk and specificity in abiotic stress signalling in plants. J.

Exp. Bot. 55: 225-236

Chinnusamy V, Jagendorf A, Zhu JK (2005) Understanding and improving

salt tolerance in plants. Crop Science 45: 437-448

Clamp M, Cuff J, Searle SM, Barton GJ (2004) The Jalview Java Alignment

Editor. Bioinformatics 20: 426-427

Comeau DE, lkenaka K, Tsung K, Inouye M (1985) Primary characterization

of the protein products of the Escherichia coli ompB locus: structure

and regulation of synthesis of the OmpR and EnvZ proteins.

J. Bacterial. 164: 578-584

Cui W, Beever RE, Parkes SL, Weeds PL, Templeton MD (2002) An

osmosensing histidine kinase mediates dicarboximide fungicide

resistance in Botryotinia fuckeliana (Botrytis cinerea). Fungal Genet.

Bioi. 36:187-198

Das-Chatterjee A, Gos Loomis WF, Shaulsky G, Wang N (1997) Histidine

kinases in signal transduction pathways of eukaryotes. J. Cell Sci.

11 0: 11 4 1 -11 45

Desikan R, Horak J, Chaban C, Mira-Rodado D, Witthoft J, Elgass K, Grefan

C, Cheung MK, Meixner AJ, Hooley R, Neill SJ, Hancock JT, Harter K

(2008) The histidine kinase AHK5 integrates endogenous and

environmental signals in Arabidopsis guard cells. PLos One 3: e2491

Dry IB, Yuan KH, Hutton DG (2004) Dicarboximide resistance in field isolates

of Alternaria alternata is mediated by a mutation in a two-component

histidine kinase gene. Fungal Genet. Bioi. 41 :102-108

Du L, Chu J, Jin G, Chen M, Wu P (2007) The two-component signal system

in rice (Oryza sativa L.): A genome-wide study of cytokinin signal

perception and transduction. Genomics 89: 697-707

Egger LA, Park H, Inouye M (1997) Signal transduction via the histidyl

aspartyl phosphorelay. Genes Cells 2: 167-184

192

Cfiapter 7 ~ferences

FAO (2008) FAO Land and plant nutrition management service.

http://www.fao.org/ag/agl/agll/spush

Ferrigno P, Posas F, Koepp D, Saito H, Silver PA (1998) Regulated

nucleo/cytoplasmic exchange of HOG1 MAPK requires the importin

beta homologs NMD5 and XP01. EMBO J. 17: 5606-5614

Flowers T J, Yeo AR (1995) Breeding for salinity resistance in crop plants

where next. Australian J. Plant Physiology 22: 875-884

Foussard M, Gabantous S, Pedelacq J, Guillet V, Tranier S, Mourey L, Birck

G, Samama J (2001) The molecular puzzle of two-component

signaling cascades. Microbes Infect. 3: 417-424

Fujimura M, Ochiai N, lchiishi A, Usami R, Horikoshi K, Yamaguchi I (2000)

Sensitivity to phenylpyrrole fungicides and abnormal glycerol

accumulation in os and cut mutant strains of Neurospora crassa. J.

Pestic. Sci. 25: 31-36

Fujita M, Fujita Y, Maruyama K, Seki M, Hiratsu K, Ohme-Takagi M, Tran LS,

Yamaguchi-Shinozaki K, Shinozaki K (2004) A dehydration-induced

NAG protein, RD26, is involved in a novel ABA-dependent stress

signaling pathway. Plant J. 39: 863-876

Fujita Y, Fujita M, Satoh R, Maruyama K, Parvez MM, Seki M, Hiratsu K,

Ohme-Takagi M, Shinozaki K, Yamaguchi-Shinozaki K (2005)

AREB1 Is a transcription activator of novel ABRE-dependent ABA

signaling that enhances drought stress tolerance in Arabidopsis.

Plant Gell17: 3470-3488

Garg AK, Kim JK, Owens TG, Ranwala AP, Ghoi YD,Kochian LV, Wu RJ

(2002) Trehalose accumulation in rice plants confers high tolerance

levels to different abiotic stresses. Proc. Natl. Acad. Sci. USA. 99:

15898-15903

·Glenn EP, Brown JJ, Blumwald E (1999) Salt tolerance and crop potential of

halophytes. Grit. Rev. Plant. Sci. 18: 227-255

Grebe TW, Stock JB (1999) The histidine protein kinase superfamily. Adv.

Microb. Physiol. 41 : 139-227

193

Chapter 7 CJ<gjerences

Greenway H, Munns R (1980) Mechanisms of salt tolerance in

nonhalophytes. Annu. Rev. Plant Physiol. 31: 149-190

Grefen C, Harter K (2004) Plant two-component systems: principles,

functions, complexity and cross talk. Planta 219: 733-7 42

Grover A, Pareek A, Maheshwari SC (1992) Molecular approaches for

genetically engineering plants tolerant to salt stress. Proc. Indian

National Sci. Acad. 2: 113-127

Guerrero FD, Jones JT, Mullet JE (1990) Turgor responsive gene

transcription and RNA levels increase rapidly when pea shoots are

wilted: Sequence and expression of three inducible genes. Plant Mol.

Bioi. 15: 11-26

Guo H, Ecker JR (2004) The ethylene signaling pathway: new insights. Curr.

Opin. Plant Bioi. 7: 40-49

Gustin MC, Albertyn J, Alexander M, Davenport K (1998) MAP kinase

pathways in the yeast Saccharomyces cerevisiae. Microbial. Mol. Bioi.

Rev. 62: 1264-1300

Hagemann M, Schaar A, Jeanjean R, Zuther E, Joset F (1997) The stpA

gene from Synechocystis sp. strain PCC 6803 encodes the

glucosylglycerol-phosphate phosphatase involved in cyanobacterial

osmotic response to salt shock. J Bacterial. 179: 1727-1733

Harlow E, Lane D (1988) Antibodies: A laboratory manual. New York: Cold

Spring Harbor Laboratory

Hasegawa PM, Bressan RA, Zhu JK, Bohnert HJ (2000) Plant cellular and

molecular responses to high salinity. Annu. Rev. Plant Physiol. Plant

Mol. Bioi. 51: 463-499

Hass C, Lohrmann J, Albrecht V, Sweere U, Hummel F, Yoo SD, Hwang I,

Zhu T, Schafer E, Kudla J (2004) The response regulator 2 mediates

ethylene signalling and hormone signal integration in Arabidopsis.

EMBO J. 23: 3290-3302

194


Hayakawa T, Zhu Y, ltoh K, Kimura Y (1992) Genetically engineered rice

resistant to stem stripe virus an insect transmitted virus. Proc. Natl.

Acad. Sci. 89: 9865-9869

Higuchi M, Pischke MS, Mahonen AP, Miyawaki K, Hashimoto Y, Seki M,

Kobayashi M, Shinozaki K, Kato T, Tabata S (2004) Proc. Natl. Acad.

Sci . USA 1 01 : 8821-8826

Hohmann S (2002) Osmotic stress signaling and osmoadaptation in yeasts.

Microbial. Mol. Bioi. Rev. 66: 300-372

Hossain M (1995) Sustaining food security for fragile environments in Asia:

achievements, challenges, and implications for rice research. In:

Fragile lives in fragile ecosystems. Proc. International Rice Research

Institute, Los Banos, Laguna, Phipillines. pp 3-24

Hwang I, Chen HC, Sheen J (2002) Two-component signal transduction

pathways in Arabidopsis. Plant Physiol. 129: 500-515

International rice genome sequencing project. 2005. The map-based

sequence of the rice genome. Nature 436: 793-800

Ireland HMM, Bradbeer JW (1979) Plastid development in primary leaves of

Phaseolus vulgaris. The effects of D-threo and L-threo

chloramphenicol on the light-induced formation of enzymes of the

photosynthetic carbon pathway. Planta 96: 254-261

Ismail AM, Heuer S, Thomson MJ, Wissuwa M (2007) Genetic and genomic

approaches to develop rice germplasm for problem soils. Plant Mol.

Bioi. 65: 547-570

Ito H, Fukuda Y, Murata K, Kimura A (1983) Transformation of intact yeast

cells treated with alkali cations. J. Bacterial. 153: 163-168

lwama A, Yamashino T, Tanaka Y, Sakakibara H, Kakimoto T, Sato S, Kato

T, Tabata S, Nagatani A, Mizuno T (2007) Plant Cell Physiol. 48:

3750-3780

Jain M, Tyagi AK, Khurana JP (2006) Molecular characterization and

differential expression of cytokinin-responsive type-A response

regulator in rice (Oryza sativa). BMC Plant Biology 6:1

195


Jain M, Tyagi AK, Khurana JP (2008) Differential gene expression of rice

two-componenet signalling elements during reproductive development

and regulation by abiotic stress. Funct. lntegr. Genomics 8: 175-180

James P, Halladay J, Craig E A (1996) Genomic libraries and a host strain

designed for highly efficient two-hybrid selection in yeast.

Genetics. 144: 1425-1436

Jang IC, Oh SJ, Seo JS, Choi WB, Song Sl, Kim CH, Kim YS, Seo HS, Choi

YO, Nahm BH, Kim JK (2002) Expression of a bifunctional fusion of

the Escherichia coli genes for trehalose-6-phosphate synthase and

trehalose-6-phosphate phosphatases in transgenic rice plants

increases trehalose accumulation and abiotic stress tolerance without

stunting growth. Plant Physiol. 131:516-524

Jindal HK, Vishwanatha JK (1990a) Purification and characterization of

primer recognition proteins from Hela cells. Biochem. 29: 4767-4773

Jindal HK, Vishwanatha JK (1990b) Functional identity of a primer

recognition protein as phosphoglycerate kinase. J. Bioi. Chern. 265:

6540-6543

Joseph F (1989) PHYLIP - Phylogeny Inference Package (Version 3.2).

Cladistics. 5: 164-166

Kakimoto T (2003) Perception and signal transduction of cytokinins. Annu.

Rev . Plant Bioi. 54: 605-627

Kaneko T, Sato S, Kotani H (1996) Sequence analysis of the genome of the

unicellular cyanobacterium Synechocystis sp. strain PCC6803. II.

Sequence determination of the entire genome and assignment of

potential protein-coding regions. DNA Res. 3: 1 09-136

Karakas B, Ozias-Akins P, Stushnoff C, Suefferheld M, Rieger M (1997)

Salinity and drought tolerance in mannitol-accumulating transgenic

tobacco. Plant Cell Environ. 20: 609-616

Karan R, Singla-Pareek SL, Pareek A (2009) Histidine kinase and response

regulator genes as they relate to salinity tolerance in rice. Funct.

lntegr. Genomics 9: 411-417

196


Kasuga M, Liu Q, Miura S, Yamaguchi SK, Shinozaki K (1999) Improving

plant drought, salt, and freezing tolerance by gene transfer of a single

stress-inducible transcription factor. Nat. Biotech no I. 17: 287-291

Kathuria H, Giri J, Nataraja KN, Murata N, Udayakumar M, Tyagi AK (2009)

Glycinebetaine-induced water-stress tolerance in codA-expressing

transgenic indica rice is associated with up-regulation of several stress

responsive genes. Plant Biotechnol. J. 7: 512-526

Kawasaki S, Borchert C, Deyholos M, Wang H, Brazille S, Kawai K, Galbraith

D, Bohnert HJ (2001) Gene expression profiles during the initial

phases of salt stress in rice. Plant Cell 13: 889-905

Kikkert JR (1993) The Biolistic PDS-1 000/He device. Plant Cell Tissue and

Organ Culture 33: 221-226

Kim JC, Lee SH, Cheong YH, Yoo CM, Lee Sl, Chun HJ, Yun DJ, Hong JC,

Lee SY, Lim CO (2001) A novel cold-inducible zinc finger protein from

soybean, SCOF-1, enhances cold tolerance in transgenic plants. Plant

J. 25: 247-259

Kopke-Secundo E, Molnar I, Schnarrenberger C (1990) Isolation and

characterization of the cytosolic and chloroplastic 3-phosphoglycerate

kinase from spinach leaves. Plant Physiol. 93: 40-47

Kumar G, Purty RS, Sharma MP, Singla-Pareek SL, Pareek A (2009)

Physiological responses among Brassica species under salinity stress

show strong correlation with transcript abundance for SOS pathway

related genes. J Plant Physiol. 166: 507-520

· Kumari S, Panjabi Nee Sabharwal V, Kushwaha HR, Sopory SK, Singla

Pareek SL, Pareek A (2009) Transcriptome map for seedling stage

specific salinity stress response indicates a specific set of genes as

candidate for saline tolerance in Oryza sativa L. Funct. lntegr.

Genomics 9: 1 09-123

Kyte L, and Doolittle RF (1982) A simple model for displaying the hydropathic

character of a protein. J. Mol. Bioi. 157: 105-132

197

Cliapter 7 CJ?§jerences

Lafitte HR, Courtois B, Arraudeau M (2002) Genetic improvement of rice in

aerobic systems: progress from yield to genes. Field Crops Res. 75:

171-190 ~ Laemmli UK (1970) Cleavage of structural proteins during the assembly of

the head of bacteriophage T 4· Nature 227: 680-685

Lambers H (2003) Dryland salinity: a key environmental issue in southern

Australia. Plant and Soil 257: V-VII

Latzko E, Gibbs M (1968) Distribution and activity of enzymes of the

reductive pentose phosphate cycle in spinach leaves and in

chloroplasts isolated by different methods. J. Plant Physiol. 59: 184-

194

Letunic I, Copley RR, Pils B, Pinkert S, Schultz J, Bark P (2006) SMART 5:

domains in the context of genomes and networks. Nucl. Acids Res.

34: D257-D260

Leung H (2008) Stressed genomics-bringing relief to rice fields. Curr. Opin.

Plant. Bioi. 11: 201-208

Lin C, Fang J, Xu X, Zhao T, Cheng J, Tu J, Ye G, Shen Z (2008) A built-in

strategy for containment of transgenic plants: creation of selectively

terminable transgenic rice. Plos One 3: e1818

Lin JW, Ding MP, Hsu YH, Tsai CH (2007) Chloroplast phosphoglycerate

kinase, a gluconeogenetic enzyme, is required for efficient

accumulation of Bamboo mosaic virus. Nucl. Acids Res. 35: 424-432

Lin HX, Zhu MZ, Yano M, Gao JP, Liang ZW, Su WA, Hu XH, Ren ZH, Chao

DY (2004) QTLs for Na+, K+ uptake controlling rice salt tolerance of

shoot and root. Theor. Appl. Genet. 108: 253-260

Lohrmann J, Harter K (2002) Plant two-component signaling systems and the

role of response regulators. Plant Physiol. 128: 363-369

Longstaff M, Raines CA, McMorrow EM, Brad beer JW, Dyer TA (1989)

Wheat phosphoglycerate kinase: evidence for recombination between

the genes for the chloroplastic and cytosolic enzymes. Nucl. Acids

Res. 17:6569-6580

198


Lopes MS, Araus JL (2008) Comparative genomic and physiological analysis

of nutrient response to NH4 +, NH4 +:No3- and N03- in barley seedlings.

Physiol. Plant. 134: 134-150

LuG, Gao C, Zheng X, Han B (2008) Identification of OsbZIP72 as a positive

regulator of ABA response and drought tolerance in rice. Planta 229:

605-615

Maeda T, Wurgler-Murphy SM, Saito H (1994) A two-component system that

regulates an osmosensing MAP kinase cascade in yeast. Nature 369:

242-245

Maeda T, Takekawa M, Saito H (1995) Activation of yeast PBS2 MAPKK by

MAPKKKs or by binding of an SH3-containing osmosensor. Science

269: 554-558

Mahalakshmi S, Christopher GS, Reddy TP, Rao KV, Reddy VD (2006)

Isolation of a eDNA clone (PcSrp) encoding serine-rich-protein from

Porteresia coarctata T. and its expression in yeast and finger millet

(Eieusine coracana L.) affording salt tolerance. Planta 224: 347-359

Mahonen AP, Higuchi M, Tormakangas K, Miyawaki K, Pischke MS,

Sussman MR, Helariutta Y, Kakimoto T (2006) Cytokinins regulate a

bidirectional phosphorelay network in Arabidopsis. Curr. Bioi. 16:1116-

1122

Marin K, Suzuki I, Yamaguchi K, Ribbeck K, Yamamoto H, Kanesaki Y,

Hagemann M, Murata N (2003) Identification of histidine kinases that

act as sensors in the perception of salt stress in Synechocystis sp.

PCC 6803. Proc. National Acad. Sc. 100: 9061-9066

Matzke MA, Matzke AJM (1995) How and why do plants inactivate

homologous transgenes? Plant Physiol. 107: 679-685

McMorrow EM, Bradbeer JW (1987) The regulation of phosphoglycerate

kinase in the chloroplasts and cytoplasm of barley leaves. In J Biggins,

ed, Progress in Photosynthesis Research, Vol. Ill. Martinus Nijhoff,

Netherlands. pp 333-336

199


McMorrow EM, Bradbeer JW (1990) Separation, Purification, and

Comparative Properties of Chloroplast and Cytoplasmic

Phosphoglycerate Kinase from Barley Leaves. Plant Physiol. 93: 374-

383

Mohanty A, Kathuria H, Ferjani A, Sakamoto A, Mohanty P, Murata N, Tyagi

AK (2002) Transgenics of an elite indica rice variety Pusa Basmati 1

harbouring the codA gene are highly tolerant to salt stress.

Theor. Appl. Genet. 106: 51-57

Moradi F, Ismail AM (2007) Responses of photosynthesis, chlorophyll

fluorescence and ROS scavenging system to salt stress during

seedling and reproductive stages in rice. Ann. Bot. 99: 1161-1173

Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight

DNA. Nucl. Acids Res. 8: 4321-4325

Nagahashi S, Mio T, Ono N, Yamada-Okabe T, Arisawa M, Bussey H,

Yamada-Okabe H (1998) Isolation of CaSLN1 and CaNIK1, the genes

for osmosensing histidine kinase homologues, from the pathogenic

fungus Candida albicans. Microbiology 144: 425-432

Napoli C, Lemieux C, Jorgensen R (1990) Introduction of a chimeric

chalcone synthase gene into petunia results in reversible co

supression of homologous genes in trans. Plant Cell 2: 279-289

Narusaka Y, Nakashima K, Shinwari ZK, Sakuma Y, Furihata T, Abe H,

Narusaka M, Shinozaki K, Yamaguchi- Shinozaki K (2003) Interaction

between two cis-acting elements, ABRE and DRE, in ABA-dependent

expression of Arabidopsis rci2.9A gene in response to dehydration and

high-salinity stresses. Plant J. 34: 137-148

Nishimura N, Yoshida T, Murayama M, Asami T, Shinozaki K, Hirayama T

(2004) Isolation and characterization of novel mutants affecting the

abscisic acid sensitivity of Arabidopsis germination and seedling

growth. Plant Cell Physiol. 45: 1485-1499

200


Ogino T, lwama M, Kinouchi J, Shibagaki Y, Tsukamoto T, Mizumoto K

(1999) Involvement of a cellular glycolytic enzyme, phosphoglycerate

kinase, in Sendai virus transcription. J. Bioi. Chem. 274: 35999-36008

Oh SJ, Song Sl, Kim YS, Jang HJ, Kim SY, Kim M, Kim YK, Nahm BH, Kim

JK (2005) Arabidopsis CBF3/DREB1A and ABF3 in transgenic rice

increased tolerance to abiotic stress without stunting growth. Plant

Physiol. 138: 341-351

Oka A, Sakai H, lwakoshi S (2002) His-Asp phosphorelay signal transduction . .

in higher plants: receptors and response regulators for cytokinin

signaling in Arabidopsis thaliana. Genes Sys. 77: 383-391

Oraby HF, Callista B Ransom, Alexandra N. Kravchenko and Mariam B.

Sticklen (2005) Barley HVA1 Gene Confers Salt Tolerance in R3

Transgenic Oat. Crop Sci. 45: 2218-2227

O'Rourke SM, Herskowitz I (1998). The Hog1 MAPK prevents cross talk

between the HOG and pheromone response MAPK pathways in

Saccharomyces cerevisiae. Genes Dev. 12: 2874-2886

O'Rourke SM, Herskowitz I, O'Shea EK (2002) Yeast go the whole HOG for

the hyperosmotic response. Trends Genet. 18: 405-412

Orr JW, Hagerman PJ, Williamson JR (1998) Protein and Mg (2+)-induced

conformational changes in the S15 binding site of 16 S ribosomal

RNA. J. Mol. Bioi. 275: 453-464

Oshima M, Fujimura M, Banno S, Hashimoto C, Motoyama T, lchiishi A,

Yamaguchi I (2002) A point mutation in the two-component histidine

kinase BcOS-1 gene confers dicarboximide resistance in field isolates

of Botrytis cinerea. Phytopathology 92: 75-80

Ota IM, Varshavsky A (1993) A yeast protein similar to bacterial two

component regulators. Science 262: 566-569

Pacold I, Anderson LE (1975) Chloroplast and cytoplasmic enzymes. VI.

Pea leaf 3-phosphoglycerate kinases. Plant Physiol. 55: 168-171

Paithoonrangsarid K, Shoumskaya MA, Kanesaki Y, Satoh S, Tabata S, Los

DA, Zinchenko VV, Hayashi H, Tanticharoen M, Suzuki I, Murata N

201


(2004) Five Histidine Kinases Perceive Osmotic Stress and Regulate

Distinct Sets of Genes in Synechocystis. J. Bioi. Chem. 279: 53078-

53086

Pandey GK, Reddy VS, Reddy MK, Deswal R, Bhattacharya A, Sopory SK

(2002) Transgenic tobacco expressing Entamoeba histolytica calcium

binding protein exhibits enhanced growth and tolerance to salt stress.

162: 41-47

Pareek A, Singla SL, Grover A (1995) Immunological evidence for

accumulation of two high-molecular-weight (1 04 and 90 kDa) HSPs in

response to different stresses in rice and in response to high

temperature stress in diverse plant genera. Plant Mol Bioi. 29: 293-

301

Pareek A, Singh A, Kumar M, Kushwaha H, Singla-Pareek SL (2006) Whole

genome analysis of Oryza sativa reveals similar architecture of two

component signaling machinery with Arabidopsis. Plant Physiol. 142:

380-397

Parker R, Flowers T J, Moore AL, Harpham NV (2006) An accurate and

reproducible method for proteome profiling of the effects of salt stress

in the rice leaf lamina. J. Exp. Bot. 57: 11 09-1118

Parkinson JS, Kofoid EC (1992) Communication modules in bacterial

signaling proteins. Annu. Rev. Genet. 26: 71-112

Peck SC (2003) Early phosphorylation events in biotic stress. Curr. Opin.

Plant Bioi. 6: 334-833

Pevsner J (2005) Bioinformatics and Functional Genomics. In: John Wiley

and Sons ISBN: 9780471459163

Pillonel C, Meyer T (1997) Effect of phenylpyrroles on glycerol accumulation

and protein kinase activity of Neurospora crassa. Pestic. Sci. 49: 229-

236

Popanda 0, Fox G, Thielmann HW (1998) Modulation of DNA polymerases

alpha~ delta and epsilon by lactate dehydrogenase and 3-

phosphoglycerate kinase. Biochimica Biophysica Acta 1397: 1 02-1 07

202

Cliapter 7 CJ?.§jerences

Posas F, Wurgler-Murphy SM, Maeda T, Witten EA, Thai TC, Saito H (1996)

Yeast HOG1 MAP kinase cascade is regulated by a multistep

phosphorelay mechanism in the SLN1-YPD1-SSK1 'two

component' osmosensor. Cell 86: 865-875

Posas F, Saito H (1997) Osmotic activation of the HOG MAPK pathway via

Ste11 p MAP KKK: scaffold role of Pbs2p MAPKK. Science 276: 1702- ·

1705

Posas F, Saito H (1998) Activation of the yeast SSK2 MAP kinase kinase

kinase by the SSK1 two-component response regulator. EMBO J. 17:

1385-1394

Prasad KV, Sharmila P, Pardha-Saradhi P (2000) Enhanced tolerance of

transgenic Brassica juncea to choline confirms successful expression

of the bacterial codA gene. Plant Sci. 159: 233-242

Price AH, Townend J, Jones MP, Audebert A, Courtois B (2002) Mapping

QTLs associated with drought avoidance in upland rice grown in the

Philippines and West Africa. Plant Mol. Bioi. 48: 683-695

Proft M, Pascuai-Ahuir A, Nadal E, Ariiio J, Serrano R, Posas F (2001)

Regulation of the Sko1 transcriptional repressor by the Hog1 MAP

kinase in response to osmotic stress. EMBO J. 20: 1123-1133

Qian Q, Zeng D, He P, Zheng X, Chen Y, Zhu L (2000) QTL analysis of the

rice seedling cold tolerance in a double haploid population derived

from anther culture of a hybrid between . indica and japonica rice.

Chinese Science Bulletin 45: 448-453

Raitt DC, Posas F, Saito H (2000) Yeast Cdc42 GTPase and Ste20 PAK-Iike

kinase regulate Sho1-dependent activation of the Hog1 MAPK

pathway. EMBO J. 19: 4623-4631

Reiser V, Ruis H, Ammerer G (1999) Kinase activity-dependent nuclear

export opposes stress-induced nuclear accumulation and retention of

Hog1 mitogen-activated protein kinase in the budding yea~t

Saccharomyces cerevisiae. Mol. Bioi. Cell. 10: 1147-1161

203

Cliapter 7 CJ?sjerences

Reiser V, Salah SM, Ammerer G (2000) Polarized localization of yeast Pbs2

depends on osmostress, the membrane protein Sho1 and Cdc42. Nat.

Cell Bioi. 2: 620-627

Reiser V, Raitt DC, Saito H (2003) Yeast osmosensor Sln1 and plant

cytokinin receptor Cre1 respond to changes in turgor pressure. J. Cell

Bioi. 161 :1035-1040

Rengasamy P (2006) World salinization with emphasis on Australian Journal

of Experimental Botany 57: 1017-1023

Robert CE (2004) MUSCLE: multiple sequence alignment with high accuracy

and high throughput. Nucl. Acids Res. 32: 1792-1797

Ruidang Q, Mei S, Hui Z, Yanxiu Zhao, Juren Z (2004) Improved chilling

tolerance by transformation with beta gene for the enhancement of

glycinebetaine synthesis in maize. Plant Science 166: 141-149

Sahi C, Agarwal M, Reddy MK, Sopory SK, Grover A (2003) Isolation and

expression analysis of salt stress associated ESTs from contrasting

rice cultivars using a PCR-based subtraction method. Theor. Appl.

Genet. 106: 620-628

Sahi C, Singh A, Kumar K, Blumwald E and Grover A (2006) Salt stress

response in rice: genetics, molecular biology and comparative

genomics. Funct. lntegr. Genomics 6: 263-284

Sambrook J, Russell DW (2001) Molecular cloning: A laboratory manual, 3rd . ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY

Sanan-Mishra N, Pham XH, Sopory SK, Tuteja N (2005) Pea DNA helicase

45 overexpression in tobacco confers high salinity tolerance without

affecting yield. Proc. Natl. Acad. Sci. USA. 102:509-514.

Schaller GC, Doi K, Hwang I, Kieber JJ, Khurana JP, Kurata N, Mizuno T,

Pareek A, Shiu SH, Wu P, Yip WK (2007) Nomenclature for Two-·

Component Signaling Elements of Rice. Plant Physiol.143: 555-557

Schultz J, Milpetz F, Bork P, Panting CP (1998) SMART, a simple modular

architecture research tool: Identification of signaling domains.

PNAS 95: 5857-5864

204

Cliapter 7 <R§jerences

Schultz et al. (1998) SMART, a simple modular architecture research tool:

Identification of signalling domains. Proc. Natl. Acad. Sci. 95: 5857-

5864

Schumacher MM, Enderlin CS, Selitrennikoff CP (1997) The osmotic-1 locus

of Neurospora crassa encodes a putative histidine kinase similar to

osmosensors of bacteria and yeast. Curr. Microbial. 34: 340-347

Shah N, Bradbeer JW (1994) The occurrence of chloroplastic and cytosolic

isoenzymes of phosphoglycerate kinase in a range of plant species.

Planta. 193: 232-237

Shetty S, Muniyappa H, Halady PKS, ldell S (2004) Regulation of urokinase

receptor expression by phosphoglycerate kinase. Am. J. Respir. Cell

Mol. Bioi. 31 : 1 00-1 06

Singh NK, Dalal V, Batra K, Singh BK, Chitra G, Singh A, Ghazi lA, Yadav M,

Pandit1, Dixit R, Singh PK, Singh H, Koundal KR, Gaikwad K,

Mohapatra T, Sharma TR (2007) Single-copy genes define a

conserved order between rice and wheat for understanding

differences caused by duplication, deletion, and transposition of

genes. Funct. lntegr. Genomics 7: 17-35

Singh RK, Gregario GB, Jain RK (2007) QTL mapping for salinity tolerance in

rice. Physiol. Mol. Bioi. Plants. 13: 87-99

Singh S, Mackill DJ, Ismail AM (2009) Responses of SUB1 rice introgression

lines to submergence in the field: Yield and grain quality. Field Crops

Res. doi:1 0.1 016/j.fcr.2009.04.003

Sing Ia SL, Pareek A, Kush AK, Grover A (1998) Distribution patterns of 104

kDa stress-associated protein in rice. Plant Mol. Bioi. 37: 911-919

Singla-Pareek S, Reddy MK, Sopory SK (2003) Genetic engineering of the

glyoxalase pathway in tobacco leads to enhanced salinity tolerance.

Proc. Natl. Acad. Sci. USA. 100: 14672-14677

Singla-Pareek SL, Yadav SK, Pareek A, Reddy MK, Sopory SK (2006)

Transgenic tobacco overexpressing glyoxalase pathway enzymes

205

Cliapter 7 (}{fjerences

grow and set viable seeds in zinc-spiked soils. Plant Physiol. 140:

613-623

Stock A, Koshland DE, Stock J (1985) Homologies between the Salmonella

typhimurium CheY protein and proteins involved in the regulation of

chemotaxis, membrane protein synthesis, and sporulation. Proc. Natl.

Acad. Sci. USA. 82: 7989-7993

Stock AM, Robinson VL, Goudreau PN (2000) Two-component signal

transduction. Annu. Rev. Biochem. 69: 183-215

Surette MG, Levit M, Liu Y, Lukat G, Ninfa EG, Ninfa A, Stock JB (1996)

Dimerization is required for the activity of the protein Histidine Kinase

CheA that mediates signal transduction in bacterial chemotaxix. J.

Bioi. Chern. 271: 939-945

Suzuki I, Kanesaki Y, Mikami K, Kanehisa M, Murata N (2001) Cold

regulated genes under control of the cold sensor Hik33 in

Synechocystis. Mol. Microbial. 40: 235-244

Suzuki S, Miwa K, Ishikawa K, Yamada H, Aiba H, Mizuno T (2001) The

Arabidopsis sensor His-kinase, AHK4, can respond to cytokinins.

Plant Cell Physiol. 42: 1 07-113

Suzuki I, Kanesaki Y, Hayashi H, Hall JJ, Simon W-J, Slabas AR, Murata N

(2005) The Histidine kinase Hik34 is involved in thermotolertance by

regulating the expression of heat shock genes in Synechocystis. Plant

Physiol. 138: 1409-1421

Taji T, Seki M, Satou M, Sakurai T, Kobayashi M, lshiyama K, Narusaka Y,

Narusaka M, Zhu JK, Shinozaki K (2004) Comparative genomics in

salt tolerance between Arabidopsis and Arabidopsis-related halophyte

salt cress using Arabidopsis microarray. Plant Physiol. 135: 1697-

1709

Tang W, Charles TM, Newton RJ (2005) Overexpression of the pepper

transcription factor CaPF1 in transgenic Virginia pine (Pinus Virginiana

Mill.) confers multiple stress tolerance and enhances organ growth.

Plant Mol. Bioi. 59: 603-617

206


Thomas JC, Sepahi M, Arendall B, Bohnert HJ (1995) Enhancement of seed

germination in high salinity by engineering mannitol expression in

Arabidopsis thaliana. Plant Cell Environ. 18: 801-806

Tran LSP, Urao T, Qin F, Maruyama K, Kakimoto T, Shinozaki K, Shinozaki

Yamaguchi K (2007) Functional analysis of AHK1/ATHK1 and

cytokinin receptor histidine kinases in response to abscisic acid,

drought and salt stress in Arabidopsis. Proc. Natl. Acad. Sci. 104:

20623-20628

Tu J, Zhang Q, Mew TW, Khush GS, Datta SK (1998) Transgenic rice variety

IR72 with Xa21 resistant to bacterial blight. Theor. Appl. Genet. 97:

31-36

Tu J, Datta K, Khush GS, Zhang Q, Datta SK (2000) Field performance of

Xa21 transgenic indica rice. Theor. Appl. Genet. 101: 15-20

Urao T, Yakubov B, Yamaguchi-Shinozaki K, Shinozaki K (1998) Stress

responsive expression of genes for two-component response

regulator-like proteins in Arabidopsis thaliana. FEBS Lett. 427: 175-

178

Urao T, Yakubov B, Satoh R, Yamaguchi-Shinozaki K, Seki M, Hirayama T,

Shinozaki K (1999) A transmembrane hybrid-type histidine kinase in

Arabidopsis functions as an osmosensor. Plant Cell 11: 1743-1754

L)rao T, Miyata S, Yamaguchi SK, Shinozaki K (2000a) Possible His to Asp

phosphorelay signaling in an Arabidopsis two-component system.

FEBS Lett. 478: 227-232

Urao T, Yamaguchi SK, Shinozaki K (2000b) Two component systems in

plant signal transduction. Trends Plant-Sci. 5: 67-74

Urao T, Yamaguchi-Shinozaki K, Shinozaki K (2001) Plant histidine kinases:

an emerging picture of two-component signal transduction in hormone

and environmental responses. Sci. STKE. 109: RE18

Van Orogen F, Stucke VM, Jorritsma G, Peter M (2001) MAP kinase

dynamics in response to pheromones in budding yeast. Nat. Cell Bioi.

3: 1 051-1 059

207

Cliapter 7 (]?sjerences

Vauchret H, Beclin C, Fagard M (2001) Post-transcriptional gene silencing in

plants. J. Cell Sci. 114: 3083-3091

Vinocur B, Altman A (2005) Recent advances in engineering plant tolerance

to Abiotic Stress: achievements and limitations. Curr. Opin.

Biotechnol. 16: 123-132

Vishwanatha JK, Jindal HK, Davis RG (1992) The role of primer recognition

proteins in DNA replication: association with nuclear matrix in Hela

cells. J. Cell Sci. 101: 25-34

Walderhaug MO, Polarek JW, Voelkner JD, Hesse JE, Altendorf K, Epstein

W (1992) KdpD and KdpE, proteins that control expression of the

kdpABC operon, are members of the two-component sensor-effector

class of regulators. J. Bacterial. 174: 2152-2159

Wang W, Vinocur B, Altman A (2003) Plant responses to drought, salinity

and extreme temperatures: towards genetic engineering for stress

tolerance. Planta. 218: 1-14

Wang XS, Zhu J, Mansueto L, Bruskiewich R (2005) Identification of

candidate genes for drought stress tolerance in rice by the integration

of a genetic (QTL) map with the rice genome physical map. Journal of

Zhejiang University Science 6: 382-388

Waterhouse PM, Graham MW, Wang MB (2001) Virus resistance and gene

silencing in plants is induced by double stranded RNA. Proc. Natl.

Acad. Sci. 95: 13959-13964

West AH, Stock AM (2001) Histidine kinases and response regulator proteins

in two-component signaling systems. Trends Biochem. Sci. 26: 369-

376

Wohlbach OJ, Quirino BF and Sussman MR (2008) Analysis of the

Arabidopsis Histidine Kinase ATHK1 reveals a connection between

vegetative osmotic stress sensing and seed maturation. Plant Cell

20:1101-1117

Yamaguchi-Shinozaki K, Shinozaki K (1993) Characterization of the

expression of a desiccation-responsive rd29 gene of Arabidopsis

208

Cliapter 7 <Rsferences

thaliana and analysis of its promoter in transgenic plants. Mol. Gen.

Genet. 236: 331-340

Yamaguchi-Shinozaki K and Shinozaki K (2006) Transcriptional regulatory

networks in cellular responses and tolerance to dehydration and cold

stresses. Annu. Rev. Plant Bioi. 57: 781-803

Yang X, Liang Z, Wen X, Lu C (2008) Genetic engineering of the

biosynthesis of glycine betaine leads to increased tolerance of

photosynthesis to salt stress in transgenic tobacco plants. Plant Mol.

Bioi. 66: 73-86

Yang Q, Chen ZZ, Zhou XF, Yin HB, Li X, Xin XF, Hong XH, Zhu JK, Gong Z,

(2009) Overexpression of SOS (Salt Overly Sensitive) Genes

Increases Salt Tolerance in Transgenic Arabidopsis. Mol. Plant 2: 22-

31

Yeo AR, Flowers TJ (1986) Salinity resistance in rice (Oryza sativa L.) and a

pyramiding approach to breeding varieties for saline soils. Aust. J.

Plant Physiol. 13: 161-173

Yoshida S, Forno DA, Cock JH, Gomez KA (1972) Laboratory manual for

physiological studies of rice, 2nd ed. IRRI1-70

Yoshimi A, Tsuda M, Tanaka C (2004) Cloning and characterization of the

histidine kinase gene Diet from Cochliobo/us heterostrophus that

confers dicarboximide resistance and osmotic adaptation. Mol. Genet.

Genomics 271 : 228-236

Zhang J, Klueva NY, Wang Z, Wu R, David TH, Nguyen HT (2001) Genetic

engineering for abiotic stress resistance in crop plants. In vitro Cellular

and Development Biology 36: 1 08-114

Zhang G, Chen M, Li L, Xu Z, Chen X, Guo J, MaY (2009) Overexpression

of the soybean GmERF3 gene, an AP2/ERF type transcription factor

for increased tolerances to salt, drought, and diseases in transgenic

tobacco. J. Exp. Bot. 2009 doi:1 0.1 093/jxb/erp214

Zhang ZG, Zhou HL, Chen T, Gong Y, Gao WH, Wang YJ, Zhang J S, Chen

SY (2004) Evidence for serine/threonine and histidine kinase activity in

209


the tobacco ethylene receptor protein NTHK2. Plant Physiol. 136:

2971-2981

Zhu J, Shi H, Lee BH, Damsz B, Cheng S, Stirm V, Zhu JK, Hasegawa PM,

Bressan RA (2004) An Arabidopsis homeodomain transcription factor

gene, HOS9, mediates cold tolerance through a CBF-independent

pathway. Proc. Natl Acad. Sci. 101: 9873-9878

Zhu JK, Liu J, Xiong L (1998) Genetic analysis of salt tolerance in

Arabidopsis thaliana: evidence of a critical role for potassium nutrition.

Plant Cell10: 1181-1192

Zhu JK (2001) Plant salt tolerance. Trends Plant Sci. 6: 66-71

Zhu JK (2002) Salt and drought stress signal transduction in plants. Annu.

Rev. Plant Bioi. 53: 247-273

Zivy M, Thiellement H, Vienne D, Hofmann JP (1983) Study on nuclear and

cytoplasmic genome expression in wheat by two-dimensional gel

electrophoresis. 1. First results on 18 alloplasmic lines. Theor. Appl.

Genet. 66: 1-7

210

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