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Fractal measures of spatial pattern as a heuristic for return rate in vegetative systems Article (Published Version) http://sro.sussex.ac.uk Irvine, M A, Jackson, E L, Kenyon, E J, Cook, K J, Keeling, M J and Bull, J C (2016) Fractal measures of spatial pattern as a heuristic for return rate in vegetative systems. Royal Society Open Science, 3 (3). ISSN 2054-5703 This version is available from Sussex Research Online: http://sro.sussex.ac.uk/id/eprint/60356/ This document is made available in accordance with publisher policies and may differ from the published version or from the version of record. If you wish to cite this item you are advised to consult the publisher’s version. Please see the URL above for details on accessing the published version. Copyright and reuse: Sussex Research Online is a digital repository of the research output of the University. Copyright and all moral rights to the version of the paper presented here belong to the individual author(s) and/or other copyright owners. To the extent reasonable and practicable, the material made available in SRO has been checked for eligibility before being made available. Copies of full text items generally can be reproduced, displayed or performed and given to third parties in any format or medium for personal research or study, educational, or not-for-profit purposes without prior permission or charge, provided that the authors, title and full bibliographic details are credited, a hyperlink and/or URL is given for the original metadata page and the content is not changed in any way.

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Page 1: Fractal measures of spatial pattern as a heuristic for ...sro.sussex.ac.uk/id/eprint/60356/1/150519.full.pdf · fractal measures and persistence exists. We combine theoretical arguments

Fractal measures of spatial pattern as a heuristic for return rate in vegetative systems

Article (Published Version)

httpsrosussexacuk

Irvine M A Jackson E L Kenyon E J Cook K J Keeling M J and Bull J C (2016) Fractal measures of spatial pattern as a heuristic for return rate in vegetative systems Royal Society Open Science 3 (3) ISSN 2054-5703

This version is available from Sussex Research Online httpsrosussexacukideprint60356

This document is made available in accordance with publisher policies and may differ from the published version or from the version of record If you wish to cite this item you are advised to consult the publisherrsquos version Please see the URL above for details on accessing the published version

Copyright and reuse Sussex Research Online is a digital repository of the research output of the University

Copyright and all moral rights to the version of the paper presented here belong to the individual author(s) andor other copyright owners To the extent reasonable and practicable the material made available in SRO has been checked for eligibility before being made available

Copies of full text items generally can be reproduced displayed or performed and given to third parties in any format or medium for personal research or study educational or not-for-profit purposes without prior permission or charge provided that the authors title and full bibliographic details are credited a hyperlink andor URL is given for the original metadata page and the content is not changed in any way

rsosroyalsocietypublishingorg

ResearchCite this article Irvine MA Jackson ELKenyon EJ Cook KJ Keeling MJ Bull JC 2016Fractal measures of spatial pattern as aheuristic for return rate in vegetative systemsR Soc open sci 3 150519httpdxdoiorg101098rsos150519

Received 19 November 2015Accepted 2 March 2016

Subject CategoryBiology (whole organism)

Subject Areasecology

Keywordsreturn rate fractal growth self-organizationpersistence ecological indicators Korcakexponent

Author for correspondenceJ C Bulle-mail jcbullswanseaacuk

Fractal measures of spatialpattern as a heuristic forreturn rate in vegetativesystemsM A Irvine1 E L Jackson2 E J Kenyon3 K J Cook4

M J Keeling5 and J C Bull6

1Centre for Complexity Science Zeeman Building University of WarwickCoventry CV4 7AL UK2School of Medical and Applied Sciences Central Queensland UniversityNorth Rockhampton Queensland Australia3School of Life Sciences University of Sussex Brighton UK4Natural England Truro UK5Mathematics Institute and Department of Biological Sciences University of WarwickGibbet Hill Road Coventry CV4 7AL UK6Department of Biosciences University of Swansea Swansea UK

Measurement of population persistence is a long-standingproblem in ecology in particular whether it is possible togain insights into persistence without long time-series Fractalmeasurements of spatial patterns such as the Korcak exponentor boundary dimension have been proposed as indicatorsof the persistence of underlying dynamics Here we exploreunder what conditions a predictive relationship betweenfractal measures and persistence exists We combine theoreticalarguments with an aerial snapshot and time series from a long-term study of seagrass For this form of vegetative growthwe find that the expected relationship between the Korcakexponent and persistence is evident at survey sites wherethe population return rate can be measured This highlightsa limitation of the use of power-law patch-size distributionsand other indicators based on spatial snapshots Moreoverour numeric simulations show that for a single species and arange of environmental conditions that the Korcakndashpersistencerelationship provides a link between temporal dynamicsand spatial pattern however this relationship is specific todemographic factors so we cannot use this methodology tocompare between species

1 IntroductionThe description and prediction of spatial patterns in naturehas fascinated theoreticians and applied ecologists alike for

2016 The Authors Published by the Royal Society under the terms of the Creative CommonsAttribution License httpcreativecommonsorglicensesby40 which permits unrestricteduse provided the original author and source are credited

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many years Initially the study of seemingly intractable complex patterns in time and space waspredominantly a descriptive science [1] However in the latter years of the previous century theoreticaladvancements demonstrated that complex spatio-temporal patterns could be generated as emergentproperties resulting from simple rules [2] This opened the door to understanding the mechanisticbasis of many types of ecological pattern including regular [3] and fractalscale-free geometries [4]However the inverse problem of inferring biological mechanisms from observations and measurementson ecological systems remains a key challenge [5ndash8] In part this is because surprisingly very similarspatial patterns can arise from a wide range of environmental and underlying endogenous processes[9ndash11] In this study we combine theoretical analysis of a simple but generally applicable spatio-temporal simulation model with statistical modelling of independent spatial and temporal datasets froma well-studied ecosystem a temperate seagrass monoculture We explore the theoretical and empiricalrelationships between spatial and temporal measures of underlying dynamics as well as providingsome discussion of the potential and limitations of using spatial metrics in order to quantify ecologicaldynamics

Broadly speaking a spatio-temporal system (such as a spatial vegetative system) will typically have ahigh number of dimensions and attempting to match model and data by comparing the precise locationsof individuals would quickly become intractable for all but trivial system sizes This introduces the ideaof using summary statistics to encapsulate the key information pertaining to the underlying dynamicsof a given ecological growth process [12] Traditionally these techniques have taken the form of statisticsderived from longitudinal measures of the total population size ignoring spatial structure [13ndash15]One important measure of resilience is the return rate or engineering resilience [1617] Given a stableecosystem this measures how long on average it takes before the system returns to the stable equilibriumpoint following a disturbance The return rate quantifies this and can be taken mathematically as thedominant eigenvalue of the dynamic system around the stable equilibrium value However often inorder to gain accurate statistics many sequential observations need to be taken over extended periodsof time By contrast spatial statistics derived from remote sensing techniques have a high number ofdegrees of freedom they can be produced rapidly can generate large amounts of data and therefore intheory may lead to insights similar to those from more classical long-term studies [21819]

The theory of fractals and scaling has numerous applications in ecology and is intimately linkedwith the ideas of spatial dynamics and inferring process from pattern The original theory proposedby Mandelbrot was used to explain certain seemingly ubiquitous patterns in nature [20] Since thistime there has been much tantalizing speculation over using fractal theory to elucidate ecologicallymeaningful parameters from spatial patterns

A major application of fractal theory in ecology is in the scaling of vegetation patch sizes Thedistribution can be described by a power law in certain settings such as semi-arid ecosystems [21]The distribution also tends to develop an increasing truncated tail as the system moves closer to acritical threshold due to increasing environmental pressure [22] This implies that a spatial snapshotof a vegetation distribution can be used to determine if an ecosystem is close to a threshold that wouldlead to ecosystem collapse The truncation of the power law may not universally be an indicator ofecosystem collapse where the simpler measure of coverage may provide a stronger indicator [23] Alsofor diatoms in intertidal mudflats the opposite relationship was found where the truncation of the powerlaw disappeared under increased grazing pressure [24] Until now there has been little direct comparisonbetween the properties of patch sizes for a single snapshot and the long-term trends (over several years)of a vegetation population

Patch-size distributions may also often be viewed as pure power laws with no truncation termcharacterized by a single exponent that determines the patchiness of the spatial pattern The exponent ofa power-law patch-size distribution also known as the Korcak exponent K is defined given a patch areaA and the number of patches observed of that size NA using the relationship

NA sim AminusK

Power-law patch-size distributions that are key to the Korcak exponent are ubiquitous in nature [25]and a variety of ecological models can reproduce such patterns [426] Moreover simple models ofaggregation dynamics which focus on the rate at which patches of differing sizes coagulate can producepatch sizes with power-law distributions and there has been some research to indicate this is a universalphenomenon [2728] The Korcak exponent gives a sense of the patchiness of the spatial pattern andhas been considered in the context of several ecological processes including correlating with grazingpressure on a landscape [29] providing an estimate of patchiness and re-forestation [30] and relating to

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the cover between two species [31] Mandelbrot [20] and subsequently Hastings [25] and Sugihara [32]proposed that there should be a linear relationship between the Korcak exponent and the underlyingdynamics of the process

However although the Korcak exponent and other measures related to persistence can be related forparticular processes in general there is no standard relationship and each measure is independent [33]It therefore remains an open problem whether such fractal exponents are able to give any insight intothe persistence of an ecosystem and where the limitations are

In this paper we explore when there is a relationship between the spatial and dynamic persistenceof an ecosystem and under what scenarios we should expect this relationship to develop In particularwe use eelgrass (Zostera marina) a key marine species around sheltered coastlines as motivation and asource of high-quality ecological data The eelgrass around the Isles of Scilly (located off the southwest tipof Cornwall UK 499 N 63 W) has the key feature that its temporal dynamics can be assembled fromextensive surveys over the past 20 years [34] while its spatial distribution has been assessed from aerialphotography [35] From our understanding of eelgrass dynamics we develop a simple probabilisticcellular automata (PCA) model of clonal growth of vegetation in the presence of an environmentalgradient that limits reproduction we compare and contrast the findings of this model with the dataavailable for eelgrass

2 Lattice-based simulation with environmental gradient21 Model developmentIn order to understand the factors that determine when a relationship between spatial and dynamicpersistence (in terms of rates of return to equilibrium density) occurs we developed an explicit spatialmodel that includes both demographic and environmental factors This allows the study of each of thesefactors separately in order to determine which contribute to the persistence relationship

We develop a mechanistic model for the clonal growth of vegetation in the presence of anenvironmental gradient This model is formulated to capture the known behaviour of eelgrass butcould be parametrized to match a range of ecosystems with a monoculture as the foundation speciesThe gradient can be used to determine the boundary between regions where the clonal species cancolonize and persist and regions where it is unable to do so due to restrictions in the environment(wave energy sea depth temperature etc) For example eelgrass will only colonize coastal regions wheresunlight nutrients and soft-sediment are sufficient hence an obvious environmental gradient that woulddetermine eelgrass growth is sea depth [3637]

We consider a single species of plant that can reproduce by local clonal growth the plants alsoexperience intra-specific competition (competition for nutrients light ground water etc) from theextended local environment which impacts on their reproductive potential Plants are assumed to die ata constant rate The model is formulated as a PCA [3839] based upon similar assumptions to the kineticequation modelling vegetative growth given in [40] Reproduction due to clonal growth or seeding andintra-specific competition are both governed by spatial kernels (kB and kC) that determine the strengthof each process at a given distance The model is defined on a square N times N lattice where each latticesite can either be occupied (1 for short-hand) or unoccupied (0) For ease of explanation we conceptuallyconsider a plant to occupy a single site although this is not necessary for any of the results The fourkey functions that determine the dynamics of this species are λ(x) which captures the environmentalgradient and is purely a function of the location x kB(d) which captures the rate at which new plantsare produced (on unoccupied sites) at a distance d from the plant (a Gaussian function with variance σ 2

1 )kC(d) which measures the degree of competition felt from a plant at distance d (another Gaussian functionwith variance σ 2

2 ) while k determines the strength of this competition on reproductionMathematically this can be written as

Px(0 rarr 1) = λ(x)

⎛⎝ sum

ioccupied

kB(x minus oi)

⎞⎠

⎛⎝1 minus k

sumioccupied

kC(x minus oi)

⎞⎠ (21a)

and

Px(1 rarr 0) = μ (21b)

where oi is the location of the ith occupied site The environmental component λ(x) determines howgrowth is modified by environmental factors and is purely a function of location x λ(x) has two

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components an environmental gradient in a given direction and a site-specific noise term to reflectrandom perturbations

λ(x) = γ lx + ξηx

Here ξ is the strength of noise parameter (ηx are independent Gaussian noise terms with mean zero andvariance one) γ gives the slope of the environmental gradient and l is a unit vector that specifies thedirection of the gradient

22 Model analysisSimulations were performed on a 100 times 100 grid for 6 times 104 time steps after the system has reached anequilibrium state where the density of occupied sites fluctuates around a mean value The dynamic (k μ)spatial (σ1 σ2) and environmental (γ ξ ) parameters were varied between simulations and the Korcakexponent and return rate were calculated for each simulation run

The return rate for the simulation is taken to be the expected rate of change in density around thelong-term equilibrium providing an exact counterpoint to the values calculated from the time-seriesdata For a given spatial pattern at time t the exact probabilities for the births and deaths at eachsite can be calculated and a single stochastic realization of these gives the spatial pattern for the nexttime step A general form of the return rate can thus be calculated by summing over the probabilityof all birth events minus the probability of all death events The expected rate of change of density istherefore E[ρi] = sum

i Pti(B) minus Pti(D) where each site is indexed with i Around the equilibrium pointthis equation is linearized such that E[ρt] = a + bρt The return rate is the gradient of this linear equationb which was calculated through linear regression The system was initialized with the north borderwhere the environmental gradient is at its maximum fully occupied This border was fixed in order toensure stochastic fade-out did not occur Simulations were run until the population reaches statisticalequilibrium this is assessed as equilibrating of the population density Once it has reached statisticalequilibrium the density and expected change in density is recorded for a given number of generationsN Linear regression is then performed on the dataset and the gradient of regression is taken to be thereturn rate

For a given spatial model distribution the Korcak exponent is calculated as follows The size of eachcontinuous cluster of occupied sites is calculated producing a distribution of patch sizes A power-law (Pareto) distribution is fitted to this data with scaling exponent and minimum patch size usinga maximum-likelihood estimator approach The minimum patch size is taken to be 1 pixel (02 times 02 m)in order to compare the model-generated and field-generated data directly and the scaling exponent wasestimated via a standard maximum-likelihood method [41]

For the first investigation dynamic and spatial parameters of the model (corresponding to eelgrassbehaviour) were fixed and the environmental parameters were varied (ξ and γ ) between 0 and 1Assuming each grid cell corresponds to a 20 times 20 cm area dynamic and spatial parameters can be setthat capture the known behaviour of eelgrass The death probability was kept constant at μ = 02 thespatial growth and competition scales were kept constant at σ1 = 05 σ2 = 1 while both high (k = 08)and low (k = 02) competition factors were investigated

For the second investigation the dynamic parameters (k and μ) were varied between 0 and 1 for fixedenvironment and spatial parameters (σ1 = 05 σ2 = 1 γ = 05 ξ = 01)

3 Field survey and aerial photography of seagrass meadowsThe results from the simulation study are directly compared with the spatial and temporal seagrassdata The aim is to find under what circumstances a relationship between the return rate and the Korcakexponent should exist and then determine if such a relationship can be observed in this real system

31 Seagrass meadow locationsWe monitored five seagrass (Z marina) meadows around the Isles of Scilly UK (figure 1 and table 1) from1996 to 2014 using rigorous and consistent methodology [344243]

32 Survey protocolSeagrass was surveyed annually during the first week of August by placing 25 quadrats (025 times 025 m)in each meadow and counting all the shoots visible above the substrate Quadrat positions were

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0lt15 m depth

seagrassMHWS

5 m05 1 2 3 4

km

N

W E

S

Figure 1 The five surveyed sites in The Isles of Scilly UK blt Broad Ledges Tresco la Little Arthur htb Higher Town Bay ogh OldGrimsby Harbour wbl West Broad Ledges Both time-series data in the form of annual surveys and spatial data in the form of a singleaerial survey were conducted (adapted from [35])

Table 1 GPS positions and depths relative to chart datum for the five seagrass survey sites (lsquo+05rsquo indicates this site is exposed at lowwater all other sites are fully sub-tidal)

site latitude and longitude depth (m)

Broad Ledges Tresco 49564prime N 06196prime W 02

Higher Town Bay 49572prime N 06166prime W +05

Little Arthur 49569prime N 06159prime W 10

Old Grimsby Harbour 49576prime N 06198prime W 06

West Broad Ledges 49575prime N 06184prime W 06

predetermined as random rectangular coordinates (x y) translated into polar coordinates (distancebearing) radiating from a chosen focal point Randomization of quadrat locations was renewed eachyear and the maximum distance was 30 m from the focal point close to the centre of each meadow

33 Statistical modellingWe developed a metapopulation dynamic model of seagrass habitat occupancy based on the classicLevins model [44] Suitable habitat is defined as either occupied or vacant The proportion of habitatpatches for meadow i Ni is dependent on colonization and extinction rates with dynamics describedby a logistic function In discrete time this function can follow the standard linearization such thatyti = ai + biNti where yti = log(Nit+1Nit) [45]

In order to calculate the return rate we estimated habitat occupancy as the proportion of replicatequadrats that were occupied by seagrass each year t at each of the five survey sites (i = 1 5) Inits linearized form the metapopulation model can be fitted to spatially replicated seagrass data usinga generalized additive model (GAM) framework regressing y on N with ai represented by sitewisey-axis intercepts and density dependence described using smoothing splines at the individual site level

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[46] The GAM fitting process implements a generalized cross-validation algorithm to assess the optimaldegree of nonlinearity Additionally we captured differences in within-site temporal variance as well asbetween-site correlation by incorporating a full variancendashcovariance matrix estimated directly from thedata (see [47] for full details of the method) The regressed value bi is then taken as the estimate for thereturn rate at site i [1748]

All analysis was performed using R v 312 (R Core Team 2014) with additional functions from thepackages ggmap ggplot2 and mgcv

4 ResultsThe spatial-dynamic persistence relationship was compared when either the environmental parametersor the demographic parameters were varied These relationships were then compared with theseagrass ecosystem where the dynamic persistence was measured from the annual longitudinalstudy and the spatial patchiness was measured from the aerial photographic survey described in themethods

41 SimulationsIn the initial investigation the dynamic and spatial parameters of the model were fixed and theenvironmental parameters were varied The Korcak exponent correlates strongly with the return ratethere is also a high likelihood for each fitted power-law distribution indicating a good fit of the exponent(figure 2ab) The gradient of the relationship was also found to vary depending on whether highcompetition or low competition was present

The environmental noise and gradient terms both have a large impact on the resulting return rate andKorcak exponent of the system (figure 3ab) A higher environmental gradient leads to a higher returnrate with a decreased spatial patchiness (lower Korcak exponent) This effect is also more pronouncedwhen the environmental noise term increases The return rate and spatial patchiness is at its greatestvalue where both the environmental gradient and noise are also at their greatest value

In the second simulation experiment the environmental parameters were fixed and the dynamic andspatial parameters were allowed to vary The resulting Korcak exponent (figure 4) gives no relationshipto the return rate Although the spatial scaling does vary (between 28 and 37) there is no clear emergentrelationship and a linear regression analysis finds no significant trend (p gt 005)

The simulation analysis therefore indicates that a negative-linear relationship is found when sites arenear equilibrium and when only environmental variables vary between sites

42 Seagrass data analysisDensity dependence analysis was undertaken to quantify the return rate of seagrass metapopulations inequilibrium at each survey site Here return rate is the negative of the gradient of the density-dependentresponse around equilibrium [48] Initially the fitted variancendashcovariance matrix was assessed Inclusionof empirical between-site spatial correlations did improve model fit (Likelihood ratio = 344 df = 10p lt 0001) Generalized cross validation showed that a linear functional form rather than smoothingsplines was the best fit at all sites except Old Grimsby Harbour making direct estimation of return ratesstraightforward in all but that case (figure 5) Return rates are shown in table 2 At three survey sitesBroad Ledges Tresco (blt) Higher Town Bay (htb) and West Broad Ledges (wbl) the null hypothesisof random walk dynamics was rejected in favour of density-dependent population regulation [13]However at Little Arthur (la) and Old Grimsby Harbour (ogh) statistically significant return rates couldnot be estimated (figure 5)

Seagrass persisted at all five survey sites throughout the length of the study (figure 5) There wasno evidence of temporal autocorrelation in the time series (Likelihood ratio = 082 p = 037) The onlysite to show a significant linear trend (decline) was Old Grimsby Harbour (t = 396 p lt 0001) We foundthe expected inverse relationship between the power-law exponent of the patch size distribution (theKorcak exponent) and the dynamic return rate for survey sites that were confirmed as having stationarytemporal dynamics (figure 6) However two sites were excluded as they failed to meet this assumptionOld Grimsby Harbour is evidently in sharp decline (figure 5) and Little Arthur while maintaining highpatch occupancy throughout the survey period could not be confirmed as being stationary (figure 5 andtable 2)

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0 01 0210

15

20

25

30

35

return rate

Kor

cak

expo

nent

10

ndash50

ndash100

ndash150

ndash20015

20

25

30

35

Kor

cak

expo

nent

0 01 02return rate

log-

likel

ihoo

d

(a) (b)

Figure 2 Relationship between return rate and Korcak dimension for high and low competition where environmental parameterswere varied Other parameters were kept constant at σ1 = 05 σ2 = 1 and μ = 02 The log-likelihood indicates goodness of fit tothe spatial data where higher values indicate a better fit (a) Korcak dimension (low k) and (b) Korcak dimension (high k)

100018 32

302826242220181614

016014012010008006004002

075

x

g

050

025

100

retu

rn r

ate

Kor

cak

expo

nent

075050025

100

075

x

g

050

025

100075050025

(b)(a)

Figure 3 Resulting values of (a) return rate and (b) Korcak exponent for environmental noise (ξ ) and environmental gradient (γ )where competition (k) is low Both environmental noise and gradient have a large impact on both the static and dynamic properties ofthe system A sharper gradient increases the return rate and this effect is more pronounced for higher environmental noise The gradientterm also decreases the patchiness of the vegetation distribution (lower exponent) and this effect again increases for higher valuesof noise

002 004 006 008 01027

28

29

30

31

32

33

34

35

36

37

Kor

cak

expo

nent

return rate

log-

likel

ihoo

d

minus250

minus200

minus150

minus100

minus50

Figure 4 Varying the dynamic parameters k and μ for fixed spatial and environment parameters σ1 = 05 σ2 = 1 γ = 05 andξ = 01 There is a lack of strong correlation between the Korcak dimension and the return rate

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blt htb wbl la ogh

05

2000 2000 2000 2000 20002010 2010 2010 2010 2010year year year year year

dens

ity o

ccup

ied

quad

rats

log

(Nt+

1N

t)de

nsity

0

06

04

02

0

ndash02

ndash04

10

ndash0604 05 06 07

Nt

08 09 10 04 05 06 07Nt

08 09 10 04 05 06 07Nt

08 09 10 04 05 06 07Nt

08 09 10 04 05 06 07Nt

08 09 10

105

10ndash3

10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10

10

Figure 5 Time-series and patch-size data from five survey sites around the Isles of Scilly UK (blt Broad Ledges Tresco htb Higher TownBay wbl West Broad Ledges la Little Arthur ogh Old Grimsby Harbour) The three sites used in the study are on the left with the twoexcluded on the right Top row Data points represent proportions of occupied 25 times 25 cm quadrats for the years 1996ndash2014Middle rowTransformed data comparing density at year t to log(Nt+1Nt) Regression line for return rate shown in black with 95 confidence limitshown as a red dashed line Bottom row Patch-size distribution for five sites with normalized frequency A solid line with a scaling of 2has been added for clarity

Table 2 Estimated return rates and Korcak exponent for the five seagrass survey sites Also given are the standard error (se) of thereturn rate fit along with the t-value and corresponding p-value and the 95 CIs for the Korcak exponent estimated through bootstrapre-sampling

site return rate se t-value (df= 50) p-value Korcak exponent 95 CI

blt 0857 0307 279 0007 1775 (1773 1776)

htb 0718 0296 233 0023 1869 (1866 1869)

la 0943 0618 152 0134 1761 (1758 1762)

ogh na na na na 1811 (1806 1813)

wbl 0930 0294 304 0004 1740 (1735 1740)

5 DiscussionThere has recently been increasing interest in finding generic spatial indicators of ecosystem pressureor collapse [2249] however until now there has been little validation of these spatial indicatorsagainst long-term population data We have demonstrated for a particular ecosystem under whatcircumstances there should be a connection between the dynamic persistence defined using the returnrate to population equilibrium and the spatial persistence defined using the Korcak exponent Thesimulations derived from a model of a spatial dynamic vegetation system in the presence of demographiccompetition and an environmental gradient demonstrated that a strong relationship exists only whenenvironmental parameters vary between sites This relationship was then compared with a long-termseagrass study where a similar relationship was found for the sites where the return rate couldbe measured

We have found that a relationship between the Korcak exponent and the return rate only exists whencertain factors are present Numerical simulation indicates a strong relationship between the Korcakexponent and the rate of return to equilibrium when only properties of the environment are altered Thisrelationship was supported to a limited extent by data obtained from the long-term study of seagrass To

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return rate05 06 07 08 09 10 11 12 13

Kor

cak

expo

nent

15

16

17

18

19

20

21

BLT

HTB

LA

WBL

95 CI85 CI

Figure 6 Korcak return rate relationship for surveyed vegetation Empirical seagrass data for three sites surveyed is shown as labelledpoints withplusmnse error bars for both return rate and Korcak exponent where the Korcak exponent errors were found through bootstrapre-sampling [50] Although Little Arthur (LA) did not have a statistically significant return rate this has been plotted here for clarityThe diagonal solid band describes the inverse relationship reproduced by the PCA model over a range of environmental parameters Theoverall simulation rate is set using known parameters of death and recruitment for Zostera marina [51] The other simulation parameterswere set arbitrarily and hence show a qualitative as opposed to quantitative similarity with the data

our knowledge this is the first time a direct comparison has been possible between time-series and spatialsnapshot data on the same natural system The strategy of coupling rigorous modelling developmentwith high-quality long-term field study is a powerful approach for making generalizable inferencebased on biologically well-supported assumptions and observation In particular analysis of where thepredicted relationship breaks down in nature where the demographic parameters between locations aresignificantly different provides useful motivation and insight for further theoretical exploration

Using a PCA model we predict a strong negative linear relationship between the Korcak exponentand the return rate over a wide range of parametersmdashin fact all parameters that generate return ratesabove 005 (figure 2) This reversal of the relationship can be observed when there is no environmentalgradient present (figure 3) While variation in environmental parameters gave a strong Korcakndashreturnrate relationship this was not duplicated when the dynamic (species-specific) parameters were varied(figure 4) Instead a very low correlation relationship was found These results highlight the practicalusefulness and potential shortcomings of this method for discerning the return rate and hence persistenceof a species from its spatial pattern The change in gradient due to high- and low-competition (k) valuesalso gives an indication of how comparisons of the Korcak exponent should be implemented (figure 2) Ifendogenous parameters (k σ1 σ2 μ) are fixed then a monotonic relationship is produced with a gradientthat is dependent on those endogenous parameters This suggests that while in some settings the Korcakexponent does correlate with the return rate of the system and thus its persistence this is not true ingeneral Other studies have recently highlighted similar results that generic indicators of a catastrophicshift may not hold generally across all settings [192352]

Our results indicate a Korcakndashpersistence relationship in a long-term study with an aerialphotographic survey Vegetation density data in the form of a 20-year quadrat survey from the Isles ofScilly UK was used to estimate the return rate for five distinct lsquomeadowsrsquo This was compared withthe Korcak exponent measured from the patch-size distribution obtained via an aerial photographicsurvey conducted towards the end of the study The same negatively correlated Korcakndashpersistencerelationship was found from this data and has qualitative agreement with the simulation study subjectto the limitations of assuming equilibrium dynamics already noted The model is simplistic in natureand may not fully capture the variety of complex interactions occurring in a vegetation system indeeddiffering model assumptions can lead to different conclusions based on spatial indicators [1952] Thecomparison between the data and model then is given to illustrate the general form of the relationshipA model with more realistic assumptions and fitted parameters may better reproduce the observedrelationship therefore This gives a tantalizing glimpse of how high-resolution remote-sensing techniquescould support some more traditional ecological survey techniques when answering questions about thedynamical persistence of an ecosystem As has recently been pointed out these spatial techniques would

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be system-dependent and further validation against empirical data is required before drawing robustconclusions from spatial snapshots alone [52]

In the event only three out of five sites assessed showed the predicted relationship between spatialand temporal statistics In both cases where the relationship between spatial and temporal dynamicsfell down it was due to being unable to reliably estimate a return rate from time-series analysis Atone site (Little Arthur) coverage by vegetation was very high for most of the time surveyed Althoughpopulation growth rate and density was reasonably described by a linear relationship (figure 5) thispresented too little information about response to perturbation to derive a statistically significant returnrate The other site not following the predicted relationship was Old Grimsby Harbour which is heavilydisturbed by boat traffic and can be seen to be declining precipitously (figure 5) These cases point tolimitations of classic time-series analysis It would require further validation of the Korcak exponentapproach to confidently use alongside time-series analysis

Sugihara [32] proposed that dynamics could be inferred from complexity of shape They illustratedthis point by using a fractional Brownian motion model where the Hurst exponent could be used todetect the persistence of the generating process Other studies [53] have used this relationship to explorehow measures of persistence can relate to dynamics however there has been no strong quantitative testof whether the spatial persistence of a landscape relates to the temporal persistence Here we have testedthe generality of this hypothesis by precisely defining dynamic persistence and then relating this to theshape of the resulting distribution Overall care must be taken when directly comparing spatial statisticsto temporal ones This general conclusion has also been recently highlighted in the context of comparingtruncations in the patch-size distribution to the proximity to a dynamic threshold [2223] Universalityof fractal growth processes leads to many spatial patterns that are similar in the sense that they sharethe same scaling relationship [54] For a fractal measure to be applied in the context of estimating areturn rate we believe that a strong mechanistic understanding of the underlying growth mechanismsis required which has similarly been found in a study of marine diatoms [24] We have focused onmechanisms where growth is locally positively correlated with surrounding vegetation and negativelycorrelated on larger scales However there may also be other spatially correlated processes in a vegetativesystem that lead to changes in the scaling properties of the system such as grazing [222355] or disease[56] It would be interesting to discern the Korcakndashpersistence relationship where such other factorsare present

Data accessibility The Isles of Scilly dataset including the patch sizes and occupancy for the five meadow sites can befound at httpdxdoiorg105061dryadr95s8Authorsrsquo contributions MAI MJK and JCB conceived the study MAI undertook the modelling with support fromMJK and JCB ELJ EJK KJC and JCB undertook the experimental work MAI MJK and JCB wrote themanuscript with suggestions and comments from all authorsCompeting interests The authors declare they have no competing interestsFunding The research in this article was in part funded by The University of Warwickrsquos EPSRC-funded DoctoralTraining Centre for Complexity Science

References1 Moffat AS 1994 Theoretical ecology winning its

spurs in the real world Science 263 1090ndash1092(doi101126science8108725)

2 Bascompte J Soleacute RV 1995 Rethinking complexitymodelling spatio-temporal dynamics in ecologyTrends Ecol Evol 10 361ndash366 (doi101016S0169-5347(00)89134-X)

3 Rietkerk M Van de Koppel J 2008 Regular patternformation in real ecosystems Trends Ecol Evol 23169ndash175 (doi101016jtree200710013)

4 Pascual M Guichard F 2005 Criticality anddisturbance in spatial ecological systems TrendsEcol Evol 20 88ndash95 (doi101016jtree200411012)

5 McIntire EJ Fajardo A 2009 Beyond description theactive and effective way to infer processes fromspatial patterns Ecology 90 46ndash56 (doi10189007-20961)

6 Borcard D Legendre P Avois-Jacquet C Tuomisto H2004 Dissecting the spatial structure of ecologicaldata at multiple scales Ecology 85 1826ndash1832(doi10189003-3111)

7 Jeltsch F Moloney K Milton SJ 1999 Detectingprocess from snapshot pattern lessons from treespacing in the southern Kalahari Oikos 85451ndash466 (doi1023073546695)

8 Silvertown J Wilson JB 1994 Community structurein a desert perennial community Ecology 75409ndash417 (doi1023071939544)

9 Eppinga MB de Ruiter PC Wassen MJ Rietkerk M2009 Nutrients and hydrology indicate the drivingmechanisms of peatland surface patterningAm Nat 173 803ndash818 (doi101086598487)

10 Liu QX Weerman EJ Herman PM Olff H van deKoppel J 2012 Alternative mechanisms alter theemergent properties of self-organization in mussel

beds Proc R Soc B 279 2744ndash2753(doi101098rspb20120157)

11 Liu QX Doelman A Rottschaumlfer V de Jager MHerman PM Rietkerk M van de Koppela J 2013Phase separation explains a new class ofself-organized spatial patterns in ecologicalsystems Proc Natl Acad Sci USA 110 11 905ndash11 910(doi101073pnas1222339110)

12 Dieckmann U Law R 2000 Relaxation projectionsand the method of moments In The geometry ofecological interactions simplifying spatialcomplexity (eds U Dieckmann R Law JAJ Metz)pp 412ndash455 Cambridge UK Cambridge UniversityPress

13 Dennis B Taper ML 1994 Density dependence intime series observations of natural populationsestimation and testing Ecol Monogr 64 205ndash224(doi1023072937041)

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

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14 Ives A Dennis B Cottingham K Carpenter S 2003

Estimating community stability and ecologicalinteractions from time-series data Ecol Monogr 73301ndash330 (doi1018900012-9615(2003)073[0301ECSAEI]20CO2)

15 Berryman A Turchin P 2001 Identifying thedensity-dependent structure underlying ecologicaltime series Oikos 92 265ndash270 (doi101034j1600-07062001920208x)

16 Holling CS 1996 Engineering resilience versusecological resilience In Engineering withinecological constraints (ed P Schulze) pp 31ndash44Washington DC National Academy

17 Sibly RM Barker D DenhamMC Hone J Pagel M2005 On the regulation of populations of mammalsbirds fish and insects Science 309 607ndash610(doi101126science1110760)

18 Legendre P Fortin MJ 1989 Spatial pattern andecological analysis Vegetatio 80 107ndash138(doi101007BF00048036)

19 Dakos V Keacutefi S Rietkerk M Van Nes EH Scheffer M2011 Slowing down in spatially patternedecosystems at the brink of collapse Am Nat 177E153ndashE166 (doi101086659945)

20 Mandelbrot BB 1983 The fractal geometry of natureNew York NY Macmillan

21 Scanlon TM Caylor KK Levin SA Rodriguez-Iturbe I2007 Positive feedbacks promote power-lawclustering of Kalahari vegetation Nature 449209ndash212 (doi101038nature06060)

22 Keacutefi S Rietkerk M Alados CL Pueyo Y PapanastasisVP ElAich A de Ruiter PC 2007 Spatial vegetationpatterns and imminent desertification inMediterranean arid ecosystems Nature 449213ndash217 (doi101038nature06111)

23 Maestre FT Escudero A 2009 Is the patch sizedistribution of vegetation a suitable indicator ofdesertification processes Ecology 90 1729ndash1735(doi10189008-20961)

24 Weerman E Van Belzen J Rietkerk M TemmermanS Keacutefi S Herman P Van de Koppel J 2012 Changesin diatom patch-size distribution and degradationin a spatially self-organized intertidal mudflatecosystem Ecology 93 608ndash618(doi10189011-06251)

25 Hastings HM Sugihara G 1993 Fractals a userrsquosguide for the natural sciences Oxford UK OxfordUniversity Press

26 Pascual M Roy M Guichard F Flierl G 2002 Clustersize distributions signatures of selfndashorganization inspatial ecologies Phil Trans R Soc Lond B 357657ndash666 (doi101098rstb20010983)

27 Vicsek T Family F 1984 Dynamic scaling foraggregation of clusters Phys Rev Lett 52 1669(doi101103PhysRevLett521669)

28 Irvine M Bull J Keeling M 2015 Aggregationdynamics explain vegetation patch-size

distributions Theor Popul Biol 108 70ndash74(doi101016jtpb201512001)

29 Xin Xp Gao Q Li Yy Yang Z 1999 Fractal analysis ofgrass patches under grazing and flood disturbancein an Alkaline grassland [J] Acta Bot Sin 41307ndash313

30 Imre AR Cseh D Neteler M Rocchini D 2011 Korcakdimension as a novel indicator of landscapefragmentation and re-forestation Ecol Indicators11 1134ndash1138 (doi101016jecolind201012013)

31 Erlandsson J McQuaid CD Skoumlld M 2011 Patchinessand co-existence of indigenous and invasivemussels at small spatial scales the interactionof facilitation and competition PLoS ONE 6e26958 (doi101371journalpone0026958)

32 Sugihara G May R 1990 Applications of fractals inecology Trends Ecol Evol 5 79ndash86(doi1010160169-5347(90)90235-6)

33 Imre AR Novotny J Rocchini D 2012 TheKorcak-exponent a non-fractal descriptor forlandscape patchiness Ecol Complexity 12 70ndash74(doi101016jecocom201210001)

34 Bull JC Kenyon EJ Cook KJ 2012 Wasting diseaseregulates long-term population dynamics in athreatened seagrass Oecologia 169 135ndash142(doi101007s00442-011-2187-6)

35 Jackson EL Higgs S Allsop T Cathray A Evans JLangmead O 2011 Isles of Scilly seagrass mappingNatural England NECR087

36 Orth RJ Moore KA 1988 Distribution of Zosteramarina L and Ruppia maritima L sensu lato alongdepth gradients in the lower Chesapeake Bay USAAquat Bot 32 291ndash305 (doi1010160304-3770(88)90122-2)

37 Krause-Jensen D Pedersen MF Jensen C 2003Regulation of eelgrass (Zostera marina) cover alongdepth gradients in Danish coastal waters Estuaries26 866ndash877 (doi101007BF02803345)

38 Balzter H Braun PW Koumlhler W 1998 Cellularautomata models for vegetation dynamics EcolModel 107 113ndash125 (doi101016S0304-3800(97)00202-0)

39 Hogeweg P 1988 Cellular automata as aparadigm for ecological modeling Appl MathComput27 81ndash100 (doi1010160096-3003(88)90100-2)

40 Lefever R Lejeune O 1997 On the origin of tigerbush Bull Math Biol 59 263ndash294 (doi101007BF02462004)

41 Clauset A Shalizi CR Newman ME 2009 Power-lawdistributions in empirical data SIAM Rev 51661ndash703 (doi101137070710111)

42 Lobelle D Kenyon EJ Cook KJ Bull JC 2013 Localcompetition and metapopulation processes drive

long-term seagrass-epiphyte population dynamicsPLoS ONE 8 e57072 (doi101371journalpone0057072)

43 Potouroglou M Kenyon EJ Gall A Cook KJ Bull JC2014 The roles of flowering overwinter survival andsea surface temperature in the long-termpopulation dynamics of Zostera marina around theIsles of Scilly UKMar Pollut Bull 83 500ndash507(doi101016jmarpolbul201403035)

44 Levins R 1969 Some demographic and geneticconsequences of environmental heterogeneity forbiological control Bull Entomol Soc Am 15237ndash240 (doi101093besa153237)

45 Royama T 1992 Analytical population dynamicsvol 10 Berlin Germany Springer Science ampBusiness Media

46 Bjoslashrnstad ON Begon M Stenseth NC Falck W SaitSM Thompson DJ 1998 Population dynamics of theIndian meal moth demographic stochasticity anddelayed regulatory mechanisms J Anim Ecol 67110ndash126 (doi101046j1365-2656199800168x)

47 Wood S 2006 Generalized additive models anintroduction with R Boca Raton FL CRC Press

48 Sibly RM Barker D Hone J Pagel M 2007 On thestability of populations of mammals birds fish andinsects Ecol Lett 10 970ndash976(doi101111j1461-0248200701092x)

49 Keacutefi S Rietkerk M Roy M Franc A De Ruiter PCPascual M 2011 Robust scaling in ecosystems andthe meltdown of patch size distributions beforeextinction Ecol Lett 14 29ndash35 (doi101111j1461-0248201001553x)

50 Efron B 1981 Nonparametric estimates of standarderror the jackknife the bootstrap and othermethods Biometrika 68 589ndash599(doi101093biomet683589)

51 Larkum AW Orth RJ Duarte C 2006 Seagrassesbiology ecology and conservation Berlin GermanySpringer

52 Keacutefi S et al 2014 Early warning signals of ecologicaltransitions methods for spatial patterns PLoS ONE9 e92097 (doi101371journalpone0092097)

53 Cunha A Santos R Gaspar A Bairros M 2005Seagrass landscape-scale changes in response todisturbance created by the dynamics ofbarrier-islands a case study from Ria Formosa(Southern Portugal) Estuar Coast Shelf Sci 64636ndash644 (doi101016jecss200503018)

54 Bunde A Havlin S 1991 Fractals and disorderedsystems New York NY Springer

55 Adler P Raff D Lauenroth W 2001 The effect ofgrazing on the spatial heterogeneity of vegetationOecologia 128 465ndash479 (doi101007s004420100737)

56 Packer A Clay K 2000 Soil pathogens and spatialpatterns of seedling mortality in a temperate treeNature 404 278ndash281 (doi10103835005072)

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

  • Introduction
  • Lattice-based simulation with environmental gradient
    • Model development
    • Model analysis
      • Field survey and aerial photography of seagrass meadows
        • Seagrass meadow locations
        • Survey protocol
        • Statistical modelling
          • Results
            • Simulations
            • Seagrass data analysis
              • Discussion
              • References
Page 2: Fractal measures of spatial pattern as a heuristic for ...sro.sussex.ac.uk/id/eprint/60356/1/150519.full.pdf · fractal measures and persistence exists. We combine theoretical arguments

rsosroyalsocietypublishingorg

ResearchCite this article Irvine MA Jackson ELKenyon EJ Cook KJ Keeling MJ Bull JC 2016Fractal measures of spatial pattern as aheuristic for return rate in vegetative systemsR Soc open sci 3 150519httpdxdoiorg101098rsos150519

Received 19 November 2015Accepted 2 March 2016

Subject CategoryBiology (whole organism)

Subject Areasecology

Keywordsreturn rate fractal growth self-organizationpersistence ecological indicators Korcakexponent

Author for correspondenceJ C Bulle-mail jcbullswanseaacuk

Fractal measures of spatialpattern as a heuristic forreturn rate in vegetativesystemsM A Irvine1 E L Jackson2 E J Kenyon3 K J Cook4

M J Keeling5 and J C Bull6

1Centre for Complexity Science Zeeman Building University of WarwickCoventry CV4 7AL UK2School of Medical and Applied Sciences Central Queensland UniversityNorth Rockhampton Queensland Australia3School of Life Sciences University of Sussex Brighton UK4Natural England Truro UK5Mathematics Institute and Department of Biological Sciences University of WarwickGibbet Hill Road Coventry CV4 7AL UK6Department of Biosciences University of Swansea Swansea UK

Measurement of population persistence is a long-standingproblem in ecology in particular whether it is possible togain insights into persistence without long time-series Fractalmeasurements of spatial patterns such as the Korcak exponentor boundary dimension have been proposed as indicatorsof the persistence of underlying dynamics Here we exploreunder what conditions a predictive relationship betweenfractal measures and persistence exists We combine theoreticalarguments with an aerial snapshot and time series from a long-term study of seagrass For this form of vegetative growthwe find that the expected relationship between the Korcakexponent and persistence is evident at survey sites wherethe population return rate can be measured This highlightsa limitation of the use of power-law patch-size distributionsand other indicators based on spatial snapshots Moreoverour numeric simulations show that for a single species and arange of environmental conditions that the Korcakndashpersistencerelationship provides a link between temporal dynamicsand spatial pattern however this relationship is specific todemographic factors so we cannot use this methodology tocompare between species

1 IntroductionThe description and prediction of spatial patterns in naturehas fascinated theoreticians and applied ecologists alike for

2016 The Authors Published by the Royal Society under the terms of the Creative CommonsAttribution License httpcreativecommonsorglicensesby40 which permits unrestricteduse provided the original author and source are credited

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many years Initially the study of seemingly intractable complex patterns in time and space waspredominantly a descriptive science [1] However in the latter years of the previous century theoreticaladvancements demonstrated that complex spatio-temporal patterns could be generated as emergentproperties resulting from simple rules [2] This opened the door to understanding the mechanisticbasis of many types of ecological pattern including regular [3] and fractalscale-free geometries [4]However the inverse problem of inferring biological mechanisms from observations and measurementson ecological systems remains a key challenge [5ndash8] In part this is because surprisingly very similarspatial patterns can arise from a wide range of environmental and underlying endogenous processes[9ndash11] In this study we combine theoretical analysis of a simple but generally applicable spatio-temporal simulation model with statistical modelling of independent spatial and temporal datasets froma well-studied ecosystem a temperate seagrass monoculture We explore the theoretical and empiricalrelationships between spatial and temporal measures of underlying dynamics as well as providingsome discussion of the potential and limitations of using spatial metrics in order to quantify ecologicaldynamics

Broadly speaking a spatio-temporal system (such as a spatial vegetative system) will typically have ahigh number of dimensions and attempting to match model and data by comparing the precise locationsof individuals would quickly become intractable for all but trivial system sizes This introduces the ideaof using summary statistics to encapsulate the key information pertaining to the underlying dynamicsof a given ecological growth process [12] Traditionally these techniques have taken the form of statisticsderived from longitudinal measures of the total population size ignoring spatial structure [13ndash15]One important measure of resilience is the return rate or engineering resilience [1617] Given a stableecosystem this measures how long on average it takes before the system returns to the stable equilibriumpoint following a disturbance The return rate quantifies this and can be taken mathematically as thedominant eigenvalue of the dynamic system around the stable equilibrium value However often inorder to gain accurate statistics many sequential observations need to be taken over extended periodsof time By contrast spatial statistics derived from remote sensing techniques have a high number ofdegrees of freedom they can be produced rapidly can generate large amounts of data and therefore intheory may lead to insights similar to those from more classical long-term studies [21819]

The theory of fractals and scaling has numerous applications in ecology and is intimately linkedwith the ideas of spatial dynamics and inferring process from pattern The original theory proposedby Mandelbrot was used to explain certain seemingly ubiquitous patterns in nature [20] Since thistime there has been much tantalizing speculation over using fractal theory to elucidate ecologicallymeaningful parameters from spatial patterns

A major application of fractal theory in ecology is in the scaling of vegetation patch sizes Thedistribution can be described by a power law in certain settings such as semi-arid ecosystems [21]The distribution also tends to develop an increasing truncated tail as the system moves closer to acritical threshold due to increasing environmental pressure [22] This implies that a spatial snapshotof a vegetation distribution can be used to determine if an ecosystem is close to a threshold that wouldlead to ecosystem collapse The truncation of the power law may not universally be an indicator ofecosystem collapse where the simpler measure of coverage may provide a stronger indicator [23] Alsofor diatoms in intertidal mudflats the opposite relationship was found where the truncation of the powerlaw disappeared under increased grazing pressure [24] Until now there has been little direct comparisonbetween the properties of patch sizes for a single snapshot and the long-term trends (over several years)of a vegetation population

Patch-size distributions may also often be viewed as pure power laws with no truncation termcharacterized by a single exponent that determines the patchiness of the spatial pattern The exponent ofa power-law patch-size distribution also known as the Korcak exponent K is defined given a patch areaA and the number of patches observed of that size NA using the relationship

NA sim AminusK

Power-law patch-size distributions that are key to the Korcak exponent are ubiquitous in nature [25]and a variety of ecological models can reproduce such patterns [426] Moreover simple models ofaggregation dynamics which focus on the rate at which patches of differing sizes coagulate can producepatch sizes with power-law distributions and there has been some research to indicate this is a universalphenomenon [2728] The Korcak exponent gives a sense of the patchiness of the spatial pattern andhas been considered in the context of several ecological processes including correlating with grazingpressure on a landscape [29] providing an estimate of patchiness and re-forestation [30] and relating to

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the cover between two species [31] Mandelbrot [20] and subsequently Hastings [25] and Sugihara [32]proposed that there should be a linear relationship between the Korcak exponent and the underlyingdynamics of the process

However although the Korcak exponent and other measures related to persistence can be related forparticular processes in general there is no standard relationship and each measure is independent [33]It therefore remains an open problem whether such fractal exponents are able to give any insight intothe persistence of an ecosystem and where the limitations are

In this paper we explore when there is a relationship between the spatial and dynamic persistenceof an ecosystem and under what scenarios we should expect this relationship to develop In particularwe use eelgrass (Zostera marina) a key marine species around sheltered coastlines as motivation and asource of high-quality ecological data The eelgrass around the Isles of Scilly (located off the southwest tipof Cornwall UK 499 N 63 W) has the key feature that its temporal dynamics can be assembled fromextensive surveys over the past 20 years [34] while its spatial distribution has been assessed from aerialphotography [35] From our understanding of eelgrass dynamics we develop a simple probabilisticcellular automata (PCA) model of clonal growth of vegetation in the presence of an environmentalgradient that limits reproduction we compare and contrast the findings of this model with the dataavailable for eelgrass

2 Lattice-based simulation with environmental gradient21 Model developmentIn order to understand the factors that determine when a relationship between spatial and dynamicpersistence (in terms of rates of return to equilibrium density) occurs we developed an explicit spatialmodel that includes both demographic and environmental factors This allows the study of each of thesefactors separately in order to determine which contribute to the persistence relationship

We develop a mechanistic model for the clonal growth of vegetation in the presence of anenvironmental gradient This model is formulated to capture the known behaviour of eelgrass butcould be parametrized to match a range of ecosystems with a monoculture as the foundation speciesThe gradient can be used to determine the boundary between regions where the clonal species cancolonize and persist and regions where it is unable to do so due to restrictions in the environment(wave energy sea depth temperature etc) For example eelgrass will only colonize coastal regions wheresunlight nutrients and soft-sediment are sufficient hence an obvious environmental gradient that woulddetermine eelgrass growth is sea depth [3637]

We consider a single species of plant that can reproduce by local clonal growth the plants alsoexperience intra-specific competition (competition for nutrients light ground water etc) from theextended local environment which impacts on their reproductive potential Plants are assumed to die ata constant rate The model is formulated as a PCA [3839] based upon similar assumptions to the kineticequation modelling vegetative growth given in [40] Reproduction due to clonal growth or seeding andintra-specific competition are both governed by spatial kernels (kB and kC) that determine the strengthof each process at a given distance The model is defined on a square N times N lattice where each latticesite can either be occupied (1 for short-hand) or unoccupied (0) For ease of explanation we conceptuallyconsider a plant to occupy a single site although this is not necessary for any of the results The fourkey functions that determine the dynamics of this species are λ(x) which captures the environmentalgradient and is purely a function of the location x kB(d) which captures the rate at which new plantsare produced (on unoccupied sites) at a distance d from the plant (a Gaussian function with variance σ 2

1 )kC(d) which measures the degree of competition felt from a plant at distance d (another Gaussian functionwith variance σ 2

2 ) while k determines the strength of this competition on reproductionMathematically this can be written as

Px(0 rarr 1) = λ(x)

⎛⎝ sum

ioccupied

kB(x minus oi)

⎞⎠

⎛⎝1 minus k

sumioccupied

kC(x minus oi)

⎞⎠ (21a)

and

Px(1 rarr 0) = μ (21b)

where oi is the location of the ith occupied site The environmental component λ(x) determines howgrowth is modified by environmental factors and is purely a function of location x λ(x) has two

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components an environmental gradient in a given direction and a site-specific noise term to reflectrandom perturbations

λ(x) = γ lx + ξηx

Here ξ is the strength of noise parameter (ηx are independent Gaussian noise terms with mean zero andvariance one) γ gives the slope of the environmental gradient and l is a unit vector that specifies thedirection of the gradient

22 Model analysisSimulations were performed on a 100 times 100 grid for 6 times 104 time steps after the system has reached anequilibrium state where the density of occupied sites fluctuates around a mean value The dynamic (k μ)spatial (σ1 σ2) and environmental (γ ξ ) parameters were varied between simulations and the Korcakexponent and return rate were calculated for each simulation run

The return rate for the simulation is taken to be the expected rate of change in density around thelong-term equilibrium providing an exact counterpoint to the values calculated from the time-seriesdata For a given spatial pattern at time t the exact probabilities for the births and deaths at eachsite can be calculated and a single stochastic realization of these gives the spatial pattern for the nexttime step A general form of the return rate can thus be calculated by summing over the probabilityof all birth events minus the probability of all death events The expected rate of change of density istherefore E[ρi] = sum

i Pti(B) minus Pti(D) where each site is indexed with i Around the equilibrium pointthis equation is linearized such that E[ρt] = a + bρt The return rate is the gradient of this linear equationb which was calculated through linear regression The system was initialized with the north borderwhere the environmental gradient is at its maximum fully occupied This border was fixed in order toensure stochastic fade-out did not occur Simulations were run until the population reaches statisticalequilibrium this is assessed as equilibrating of the population density Once it has reached statisticalequilibrium the density and expected change in density is recorded for a given number of generationsN Linear regression is then performed on the dataset and the gradient of regression is taken to be thereturn rate

For a given spatial model distribution the Korcak exponent is calculated as follows The size of eachcontinuous cluster of occupied sites is calculated producing a distribution of patch sizes A power-law (Pareto) distribution is fitted to this data with scaling exponent and minimum patch size usinga maximum-likelihood estimator approach The minimum patch size is taken to be 1 pixel (02 times 02 m)in order to compare the model-generated and field-generated data directly and the scaling exponent wasestimated via a standard maximum-likelihood method [41]

For the first investigation dynamic and spatial parameters of the model (corresponding to eelgrassbehaviour) were fixed and the environmental parameters were varied (ξ and γ ) between 0 and 1Assuming each grid cell corresponds to a 20 times 20 cm area dynamic and spatial parameters can be setthat capture the known behaviour of eelgrass The death probability was kept constant at μ = 02 thespatial growth and competition scales were kept constant at σ1 = 05 σ2 = 1 while both high (k = 08)and low (k = 02) competition factors were investigated

For the second investigation the dynamic parameters (k and μ) were varied between 0 and 1 for fixedenvironment and spatial parameters (σ1 = 05 σ2 = 1 γ = 05 ξ = 01)

3 Field survey and aerial photography of seagrass meadowsThe results from the simulation study are directly compared with the spatial and temporal seagrassdata The aim is to find under what circumstances a relationship between the return rate and the Korcakexponent should exist and then determine if such a relationship can be observed in this real system

31 Seagrass meadow locationsWe monitored five seagrass (Z marina) meadows around the Isles of Scilly UK (figure 1 and table 1) from1996 to 2014 using rigorous and consistent methodology [344243]

32 Survey protocolSeagrass was surveyed annually during the first week of August by placing 25 quadrats (025 times 025 m)in each meadow and counting all the shoots visible above the substrate Quadrat positions were

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0lt15 m depth

seagrassMHWS

5 m05 1 2 3 4

km

N

W E

S

Figure 1 The five surveyed sites in The Isles of Scilly UK blt Broad Ledges Tresco la Little Arthur htb Higher Town Bay ogh OldGrimsby Harbour wbl West Broad Ledges Both time-series data in the form of annual surveys and spatial data in the form of a singleaerial survey were conducted (adapted from [35])

Table 1 GPS positions and depths relative to chart datum for the five seagrass survey sites (lsquo+05rsquo indicates this site is exposed at lowwater all other sites are fully sub-tidal)

site latitude and longitude depth (m)

Broad Ledges Tresco 49564prime N 06196prime W 02

Higher Town Bay 49572prime N 06166prime W +05

Little Arthur 49569prime N 06159prime W 10

Old Grimsby Harbour 49576prime N 06198prime W 06

West Broad Ledges 49575prime N 06184prime W 06

predetermined as random rectangular coordinates (x y) translated into polar coordinates (distancebearing) radiating from a chosen focal point Randomization of quadrat locations was renewed eachyear and the maximum distance was 30 m from the focal point close to the centre of each meadow

33 Statistical modellingWe developed a metapopulation dynamic model of seagrass habitat occupancy based on the classicLevins model [44] Suitable habitat is defined as either occupied or vacant The proportion of habitatpatches for meadow i Ni is dependent on colonization and extinction rates with dynamics describedby a logistic function In discrete time this function can follow the standard linearization such thatyti = ai + biNti where yti = log(Nit+1Nit) [45]

In order to calculate the return rate we estimated habitat occupancy as the proportion of replicatequadrats that were occupied by seagrass each year t at each of the five survey sites (i = 1 5) Inits linearized form the metapopulation model can be fitted to spatially replicated seagrass data usinga generalized additive model (GAM) framework regressing y on N with ai represented by sitewisey-axis intercepts and density dependence described using smoothing splines at the individual site level

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[46] The GAM fitting process implements a generalized cross-validation algorithm to assess the optimaldegree of nonlinearity Additionally we captured differences in within-site temporal variance as well asbetween-site correlation by incorporating a full variancendashcovariance matrix estimated directly from thedata (see [47] for full details of the method) The regressed value bi is then taken as the estimate for thereturn rate at site i [1748]

All analysis was performed using R v 312 (R Core Team 2014) with additional functions from thepackages ggmap ggplot2 and mgcv

4 ResultsThe spatial-dynamic persistence relationship was compared when either the environmental parametersor the demographic parameters were varied These relationships were then compared with theseagrass ecosystem where the dynamic persistence was measured from the annual longitudinalstudy and the spatial patchiness was measured from the aerial photographic survey described in themethods

41 SimulationsIn the initial investigation the dynamic and spatial parameters of the model were fixed and theenvironmental parameters were varied The Korcak exponent correlates strongly with the return ratethere is also a high likelihood for each fitted power-law distribution indicating a good fit of the exponent(figure 2ab) The gradient of the relationship was also found to vary depending on whether highcompetition or low competition was present

The environmental noise and gradient terms both have a large impact on the resulting return rate andKorcak exponent of the system (figure 3ab) A higher environmental gradient leads to a higher returnrate with a decreased spatial patchiness (lower Korcak exponent) This effect is also more pronouncedwhen the environmental noise term increases The return rate and spatial patchiness is at its greatestvalue where both the environmental gradient and noise are also at their greatest value

In the second simulation experiment the environmental parameters were fixed and the dynamic andspatial parameters were allowed to vary The resulting Korcak exponent (figure 4) gives no relationshipto the return rate Although the spatial scaling does vary (between 28 and 37) there is no clear emergentrelationship and a linear regression analysis finds no significant trend (p gt 005)

The simulation analysis therefore indicates that a negative-linear relationship is found when sites arenear equilibrium and when only environmental variables vary between sites

42 Seagrass data analysisDensity dependence analysis was undertaken to quantify the return rate of seagrass metapopulations inequilibrium at each survey site Here return rate is the negative of the gradient of the density-dependentresponse around equilibrium [48] Initially the fitted variancendashcovariance matrix was assessed Inclusionof empirical between-site spatial correlations did improve model fit (Likelihood ratio = 344 df = 10p lt 0001) Generalized cross validation showed that a linear functional form rather than smoothingsplines was the best fit at all sites except Old Grimsby Harbour making direct estimation of return ratesstraightforward in all but that case (figure 5) Return rates are shown in table 2 At three survey sitesBroad Ledges Tresco (blt) Higher Town Bay (htb) and West Broad Ledges (wbl) the null hypothesisof random walk dynamics was rejected in favour of density-dependent population regulation [13]However at Little Arthur (la) and Old Grimsby Harbour (ogh) statistically significant return rates couldnot be estimated (figure 5)

Seagrass persisted at all five survey sites throughout the length of the study (figure 5) There wasno evidence of temporal autocorrelation in the time series (Likelihood ratio = 082 p = 037) The onlysite to show a significant linear trend (decline) was Old Grimsby Harbour (t = 396 p lt 0001) We foundthe expected inverse relationship between the power-law exponent of the patch size distribution (theKorcak exponent) and the dynamic return rate for survey sites that were confirmed as having stationarytemporal dynamics (figure 6) However two sites were excluded as they failed to meet this assumptionOld Grimsby Harbour is evidently in sharp decline (figure 5) and Little Arthur while maintaining highpatch occupancy throughout the survey period could not be confirmed as being stationary (figure 5 andtable 2)

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7

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0 01 0210

15

20

25

30

35

return rate

Kor

cak

expo

nent

10

ndash50

ndash100

ndash150

ndash20015

20

25

30

35

Kor

cak

expo

nent

0 01 02return rate

log-

likel

ihoo

d

(a) (b)

Figure 2 Relationship between return rate and Korcak dimension for high and low competition where environmental parameterswere varied Other parameters were kept constant at σ1 = 05 σ2 = 1 and μ = 02 The log-likelihood indicates goodness of fit tothe spatial data where higher values indicate a better fit (a) Korcak dimension (low k) and (b) Korcak dimension (high k)

100018 32

302826242220181614

016014012010008006004002

075

x

g

050

025

100

retu

rn r

ate

Kor

cak

expo

nent

075050025

100

075

x

g

050

025

100075050025

(b)(a)

Figure 3 Resulting values of (a) return rate and (b) Korcak exponent for environmental noise (ξ ) and environmental gradient (γ )where competition (k) is low Both environmental noise and gradient have a large impact on both the static and dynamic properties ofthe system A sharper gradient increases the return rate and this effect is more pronounced for higher environmental noise The gradientterm also decreases the patchiness of the vegetation distribution (lower exponent) and this effect again increases for higher valuesof noise

002 004 006 008 01027

28

29

30

31

32

33

34

35

36

37

Kor

cak

expo

nent

return rate

log-

likel

ihoo

d

minus250

minus200

minus150

minus100

minus50

Figure 4 Varying the dynamic parameters k and μ for fixed spatial and environment parameters σ1 = 05 σ2 = 1 γ = 05 andξ = 01 There is a lack of strong correlation between the Korcak dimension and the return rate

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blt htb wbl la ogh

05

2000 2000 2000 2000 20002010 2010 2010 2010 2010year year year year year

dens

ity o

ccup

ied

quad

rats

log

(Nt+

1N

t)de

nsity

0

06

04

02

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ndash02

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10

ndash0604 05 06 07

Nt

08 09 10 04 05 06 07Nt

08 09 10 04 05 06 07Nt

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08 09 10 04 05 06 07Nt

08 09 10

105

10ndash3

10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10

10

Figure 5 Time-series and patch-size data from five survey sites around the Isles of Scilly UK (blt Broad Ledges Tresco htb Higher TownBay wbl West Broad Ledges la Little Arthur ogh Old Grimsby Harbour) The three sites used in the study are on the left with the twoexcluded on the right Top row Data points represent proportions of occupied 25 times 25 cm quadrats for the years 1996ndash2014Middle rowTransformed data comparing density at year t to log(Nt+1Nt) Regression line for return rate shown in black with 95 confidence limitshown as a red dashed line Bottom row Patch-size distribution for five sites with normalized frequency A solid line with a scaling of 2has been added for clarity

Table 2 Estimated return rates and Korcak exponent for the five seagrass survey sites Also given are the standard error (se) of thereturn rate fit along with the t-value and corresponding p-value and the 95 CIs for the Korcak exponent estimated through bootstrapre-sampling

site return rate se t-value (df= 50) p-value Korcak exponent 95 CI

blt 0857 0307 279 0007 1775 (1773 1776)

htb 0718 0296 233 0023 1869 (1866 1869)

la 0943 0618 152 0134 1761 (1758 1762)

ogh na na na na 1811 (1806 1813)

wbl 0930 0294 304 0004 1740 (1735 1740)

5 DiscussionThere has recently been increasing interest in finding generic spatial indicators of ecosystem pressureor collapse [2249] however until now there has been little validation of these spatial indicatorsagainst long-term population data We have demonstrated for a particular ecosystem under whatcircumstances there should be a connection between the dynamic persistence defined using the returnrate to population equilibrium and the spatial persistence defined using the Korcak exponent Thesimulations derived from a model of a spatial dynamic vegetation system in the presence of demographiccompetition and an environmental gradient demonstrated that a strong relationship exists only whenenvironmental parameters vary between sites This relationship was then compared with a long-termseagrass study where a similar relationship was found for the sites where the return rate couldbe measured

We have found that a relationship between the Korcak exponent and the return rate only exists whencertain factors are present Numerical simulation indicates a strong relationship between the Korcakexponent and the rate of return to equilibrium when only properties of the environment are altered Thisrelationship was supported to a limited extent by data obtained from the long-term study of seagrass To

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return rate05 06 07 08 09 10 11 12 13

Kor

cak

expo

nent

15

16

17

18

19

20

21

BLT

HTB

LA

WBL

95 CI85 CI

Figure 6 Korcak return rate relationship for surveyed vegetation Empirical seagrass data for three sites surveyed is shown as labelledpoints withplusmnse error bars for both return rate and Korcak exponent where the Korcak exponent errors were found through bootstrapre-sampling [50] Although Little Arthur (LA) did not have a statistically significant return rate this has been plotted here for clarityThe diagonal solid band describes the inverse relationship reproduced by the PCA model over a range of environmental parameters Theoverall simulation rate is set using known parameters of death and recruitment for Zostera marina [51] The other simulation parameterswere set arbitrarily and hence show a qualitative as opposed to quantitative similarity with the data

our knowledge this is the first time a direct comparison has been possible between time-series and spatialsnapshot data on the same natural system The strategy of coupling rigorous modelling developmentwith high-quality long-term field study is a powerful approach for making generalizable inferencebased on biologically well-supported assumptions and observation In particular analysis of where thepredicted relationship breaks down in nature where the demographic parameters between locations aresignificantly different provides useful motivation and insight for further theoretical exploration

Using a PCA model we predict a strong negative linear relationship between the Korcak exponentand the return rate over a wide range of parametersmdashin fact all parameters that generate return ratesabove 005 (figure 2) This reversal of the relationship can be observed when there is no environmentalgradient present (figure 3) While variation in environmental parameters gave a strong Korcakndashreturnrate relationship this was not duplicated when the dynamic (species-specific) parameters were varied(figure 4) Instead a very low correlation relationship was found These results highlight the practicalusefulness and potential shortcomings of this method for discerning the return rate and hence persistenceof a species from its spatial pattern The change in gradient due to high- and low-competition (k) valuesalso gives an indication of how comparisons of the Korcak exponent should be implemented (figure 2) Ifendogenous parameters (k σ1 σ2 μ) are fixed then a monotonic relationship is produced with a gradientthat is dependent on those endogenous parameters This suggests that while in some settings the Korcakexponent does correlate with the return rate of the system and thus its persistence this is not true ingeneral Other studies have recently highlighted similar results that generic indicators of a catastrophicshift may not hold generally across all settings [192352]

Our results indicate a Korcakndashpersistence relationship in a long-term study with an aerialphotographic survey Vegetation density data in the form of a 20-year quadrat survey from the Isles ofScilly UK was used to estimate the return rate for five distinct lsquomeadowsrsquo This was compared withthe Korcak exponent measured from the patch-size distribution obtained via an aerial photographicsurvey conducted towards the end of the study The same negatively correlated Korcakndashpersistencerelationship was found from this data and has qualitative agreement with the simulation study subjectto the limitations of assuming equilibrium dynamics already noted The model is simplistic in natureand may not fully capture the variety of complex interactions occurring in a vegetation system indeeddiffering model assumptions can lead to different conclusions based on spatial indicators [1952] Thecomparison between the data and model then is given to illustrate the general form of the relationshipA model with more realistic assumptions and fitted parameters may better reproduce the observedrelationship therefore This gives a tantalizing glimpse of how high-resolution remote-sensing techniquescould support some more traditional ecological survey techniques when answering questions about thedynamical persistence of an ecosystem As has recently been pointed out these spatial techniques would

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be system-dependent and further validation against empirical data is required before drawing robustconclusions from spatial snapshots alone [52]

In the event only three out of five sites assessed showed the predicted relationship between spatialand temporal statistics In both cases where the relationship between spatial and temporal dynamicsfell down it was due to being unable to reliably estimate a return rate from time-series analysis Atone site (Little Arthur) coverage by vegetation was very high for most of the time surveyed Althoughpopulation growth rate and density was reasonably described by a linear relationship (figure 5) thispresented too little information about response to perturbation to derive a statistically significant returnrate The other site not following the predicted relationship was Old Grimsby Harbour which is heavilydisturbed by boat traffic and can be seen to be declining precipitously (figure 5) These cases point tolimitations of classic time-series analysis It would require further validation of the Korcak exponentapproach to confidently use alongside time-series analysis

Sugihara [32] proposed that dynamics could be inferred from complexity of shape They illustratedthis point by using a fractional Brownian motion model where the Hurst exponent could be used todetect the persistence of the generating process Other studies [53] have used this relationship to explorehow measures of persistence can relate to dynamics however there has been no strong quantitative testof whether the spatial persistence of a landscape relates to the temporal persistence Here we have testedthe generality of this hypothesis by precisely defining dynamic persistence and then relating this to theshape of the resulting distribution Overall care must be taken when directly comparing spatial statisticsto temporal ones This general conclusion has also been recently highlighted in the context of comparingtruncations in the patch-size distribution to the proximity to a dynamic threshold [2223] Universalityof fractal growth processes leads to many spatial patterns that are similar in the sense that they sharethe same scaling relationship [54] For a fractal measure to be applied in the context of estimating areturn rate we believe that a strong mechanistic understanding of the underlying growth mechanismsis required which has similarly been found in a study of marine diatoms [24] We have focused onmechanisms where growth is locally positively correlated with surrounding vegetation and negativelycorrelated on larger scales However there may also be other spatially correlated processes in a vegetativesystem that lead to changes in the scaling properties of the system such as grazing [222355] or disease[56] It would be interesting to discern the Korcakndashpersistence relationship where such other factorsare present

Data accessibility The Isles of Scilly dataset including the patch sizes and occupancy for the five meadow sites can befound at httpdxdoiorg105061dryadr95s8Authorsrsquo contributions MAI MJK and JCB conceived the study MAI undertook the modelling with support fromMJK and JCB ELJ EJK KJC and JCB undertook the experimental work MAI MJK and JCB wrote themanuscript with suggestions and comments from all authorsCompeting interests The authors declare they have no competing interestsFunding The research in this article was in part funded by The University of Warwickrsquos EPSRC-funded DoctoralTraining Centre for Complexity Science

References1 Moffat AS 1994 Theoretical ecology winning its

spurs in the real world Science 263 1090ndash1092(doi101126science8108725)

2 Bascompte J Soleacute RV 1995 Rethinking complexitymodelling spatio-temporal dynamics in ecologyTrends Ecol Evol 10 361ndash366 (doi101016S0169-5347(00)89134-X)

3 Rietkerk M Van de Koppel J 2008 Regular patternformation in real ecosystems Trends Ecol Evol 23169ndash175 (doi101016jtree200710013)

4 Pascual M Guichard F 2005 Criticality anddisturbance in spatial ecological systems TrendsEcol Evol 20 88ndash95 (doi101016jtree200411012)

5 McIntire EJ Fajardo A 2009 Beyond description theactive and effective way to infer processes fromspatial patterns Ecology 90 46ndash56 (doi10189007-20961)

6 Borcard D Legendre P Avois-Jacquet C Tuomisto H2004 Dissecting the spatial structure of ecologicaldata at multiple scales Ecology 85 1826ndash1832(doi10189003-3111)

7 Jeltsch F Moloney K Milton SJ 1999 Detectingprocess from snapshot pattern lessons from treespacing in the southern Kalahari Oikos 85451ndash466 (doi1023073546695)

8 Silvertown J Wilson JB 1994 Community structurein a desert perennial community Ecology 75409ndash417 (doi1023071939544)

9 Eppinga MB de Ruiter PC Wassen MJ Rietkerk M2009 Nutrients and hydrology indicate the drivingmechanisms of peatland surface patterningAm Nat 173 803ndash818 (doi101086598487)

10 Liu QX Weerman EJ Herman PM Olff H van deKoppel J 2012 Alternative mechanisms alter theemergent properties of self-organization in mussel

beds Proc R Soc B 279 2744ndash2753(doi101098rspb20120157)

11 Liu QX Doelman A Rottschaumlfer V de Jager MHerman PM Rietkerk M van de Koppela J 2013Phase separation explains a new class ofself-organized spatial patterns in ecologicalsystems Proc Natl Acad Sci USA 110 11 905ndash11 910(doi101073pnas1222339110)

12 Dieckmann U Law R 2000 Relaxation projectionsand the method of moments In The geometry ofecological interactions simplifying spatialcomplexity (eds U Dieckmann R Law JAJ Metz)pp 412ndash455 Cambridge UK Cambridge UniversityPress

13 Dennis B Taper ML 1994 Density dependence intime series observations of natural populationsestimation and testing Ecol Monogr 64 205ndash224(doi1023072937041)

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14 Ives A Dennis B Cottingham K Carpenter S 2003

Estimating community stability and ecologicalinteractions from time-series data Ecol Monogr 73301ndash330 (doi1018900012-9615(2003)073[0301ECSAEI]20CO2)

15 Berryman A Turchin P 2001 Identifying thedensity-dependent structure underlying ecologicaltime series Oikos 92 265ndash270 (doi101034j1600-07062001920208x)

16 Holling CS 1996 Engineering resilience versusecological resilience In Engineering withinecological constraints (ed P Schulze) pp 31ndash44Washington DC National Academy

17 Sibly RM Barker D DenhamMC Hone J Pagel M2005 On the regulation of populations of mammalsbirds fish and insects Science 309 607ndash610(doi101126science1110760)

18 Legendre P Fortin MJ 1989 Spatial pattern andecological analysis Vegetatio 80 107ndash138(doi101007BF00048036)

19 Dakos V Keacutefi S Rietkerk M Van Nes EH Scheffer M2011 Slowing down in spatially patternedecosystems at the brink of collapse Am Nat 177E153ndashE166 (doi101086659945)

20 Mandelbrot BB 1983 The fractal geometry of natureNew York NY Macmillan

21 Scanlon TM Caylor KK Levin SA Rodriguez-Iturbe I2007 Positive feedbacks promote power-lawclustering of Kalahari vegetation Nature 449209ndash212 (doi101038nature06060)

22 Keacutefi S Rietkerk M Alados CL Pueyo Y PapanastasisVP ElAich A de Ruiter PC 2007 Spatial vegetationpatterns and imminent desertification inMediterranean arid ecosystems Nature 449213ndash217 (doi101038nature06111)

23 Maestre FT Escudero A 2009 Is the patch sizedistribution of vegetation a suitable indicator ofdesertification processes Ecology 90 1729ndash1735(doi10189008-20961)

24 Weerman E Van Belzen J Rietkerk M TemmermanS Keacutefi S Herman P Van de Koppel J 2012 Changesin diatom patch-size distribution and degradationin a spatially self-organized intertidal mudflatecosystem Ecology 93 608ndash618(doi10189011-06251)

25 Hastings HM Sugihara G 1993 Fractals a userrsquosguide for the natural sciences Oxford UK OxfordUniversity Press

26 Pascual M Roy M Guichard F Flierl G 2002 Clustersize distributions signatures of selfndashorganization inspatial ecologies Phil Trans R Soc Lond B 357657ndash666 (doi101098rstb20010983)

27 Vicsek T Family F 1984 Dynamic scaling foraggregation of clusters Phys Rev Lett 52 1669(doi101103PhysRevLett521669)

28 Irvine M Bull J Keeling M 2015 Aggregationdynamics explain vegetation patch-size

distributions Theor Popul Biol 108 70ndash74(doi101016jtpb201512001)

29 Xin Xp Gao Q Li Yy Yang Z 1999 Fractal analysis ofgrass patches under grazing and flood disturbancein an Alkaline grassland [J] Acta Bot Sin 41307ndash313

30 Imre AR Cseh D Neteler M Rocchini D 2011 Korcakdimension as a novel indicator of landscapefragmentation and re-forestation Ecol Indicators11 1134ndash1138 (doi101016jecolind201012013)

31 Erlandsson J McQuaid CD Skoumlld M 2011 Patchinessand co-existence of indigenous and invasivemussels at small spatial scales the interactionof facilitation and competition PLoS ONE 6e26958 (doi101371journalpone0026958)

32 Sugihara G May R 1990 Applications of fractals inecology Trends Ecol Evol 5 79ndash86(doi1010160169-5347(90)90235-6)

33 Imre AR Novotny J Rocchini D 2012 TheKorcak-exponent a non-fractal descriptor forlandscape patchiness Ecol Complexity 12 70ndash74(doi101016jecocom201210001)

34 Bull JC Kenyon EJ Cook KJ 2012 Wasting diseaseregulates long-term population dynamics in athreatened seagrass Oecologia 169 135ndash142(doi101007s00442-011-2187-6)

35 Jackson EL Higgs S Allsop T Cathray A Evans JLangmead O 2011 Isles of Scilly seagrass mappingNatural England NECR087

36 Orth RJ Moore KA 1988 Distribution of Zosteramarina L and Ruppia maritima L sensu lato alongdepth gradients in the lower Chesapeake Bay USAAquat Bot 32 291ndash305 (doi1010160304-3770(88)90122-2)

37 Krause-Jensen D Pedersen MF Jensen C 2003Regulation of eelgrass (Zostera marina) cover alongdepth gradients in Danish coastal waters Estuaries26 866ndash877 (doi101007BF02803345)

38 Balzter H Braun PW Koumlhler W 1998 Cellularautomata models for vegetation dynamics EcolModel 107 113ndash125 (doi101016S0304-3800(97)00202-0)

39 Hogeweg P 1988 Cellular automata as aparadigm for ecological modeling Appl MathComput27 81ndash100 (doi1010160096-3003(88)90100-2)

40 Lefever R Lejeune O 1997 On the origin of tigerbush Bull Math Biol 59 263ndash294 (doi101007BF02462004)

41 Clauset A Shalizi CR Newman ME 2009 Power-lawdistributions in empirical data SIAM Rev 51661ndash703 (doi101137070710111)

42 Lobelle D Kenyon EJ Cook KJ Bull JC 2013 Localcompetition and metapopulation processes drive

long-term seagrass-epiphyte population dynamicsPLoS ONE 8 e57072 (doi101371journalpone0057072)

43 Potouroglou M Kenyon EJ Gall A Cook KJ Bull JC2014 The roles of flowering overwinter survival andsea surface temperature in the long-termpopulation dynamics of Zostera marina around theIsles of Scilly UKMar Pollut Bull 83 500ndash507(doi101016jmarpolbul201403035)

44 Levins R 1969 Some demographic and geneticconsequences of environmental heterogeneity forbiological control Bull Entomol Soc Am 15237ndash240 (doi101093besa153237)

45 Royama T 1992 Analytical population dynamicsvol 10 Berlin Germany Springer Science ampBusiness Media

46 Bjoslashrnstad ON Begon M Stenseth NC Falck W SaitSM Thompson DJ 1998 Population dynamics of theIndian meal moth demographic stochasticity anddelayed regulatory mechanisms J Anim Ecol 67110ndash126 (doi101046j1365-2656199800168x)

47 Wood S 2006 Generalized additive models anintroduction with R Boca Raton FL CRC Press

48 Sibly RM Barker D Hone J Pagel M 2007 On thestability of populations of mammals birds fish andinsects Ecol Lett 10 970ndash976(doi101111j1461-0248200701092x)

49 Keacutefi S Rietkerk M Roy M Franc A De Ruiter PCPascual M 2011 Robust scaling in ecosystems andthe meltdown of patch size distributions beforeextinction Ecol Lett 14 29ndash35 (doi101111j1461-0248201001553x)

50 Efron B 1981 Nonparametric estimates of standarderror the jackknife the bootstrap and othermethods Biometrika 68 589ndash599(doi101093biomet683589)

51 Larkum AW Orth RJ Duarte C 2006 Seagrassesbiology ecology and conservation Berlin GermanySpringer

52 Keacutefi S et al 2014 Early warning signals of ecologicaltransitions methods for spatial patterns PLoS ONE9 e92097 (doi101371journalpone0092097)

53 Cunha A Santos R Gaspar A Bairros M 2005Seagrass landscape-scale changes in response todisturbance created by the dynamics ofbarrier-islands a case study from Ria Formosa(Southern Portugal) Estuar Coast Shelf Sci 64636ndash644 (doi101016jecss200503018)

54 Bunde A Havlin S 1991 Fractals and disorderedsystems New York NY Springer

55 Adler P Raff D Lauenroth W 2001 The effect ofgrazing on the spatial heterogeneity of vegetationOecologia 128 465ndash479 (doi101007s004420100737)

56 Packer A Clay K 2000 Soil pathogens and spatialpatterns of seedling mortality in a temperate treeNature 404 278ndash281 (doi10103835005072)

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

  • Introduction
  • Lattice-based simulation with environmental gradient
    • Model development
    • Model analysis
      • Field survey and aerial photography of seagrass meadows
        • Seagrass meadow locations
        • Survey protocol
        • Statistical modelling
          • Results
            • Simulations
            • Seagrass data analysis
              • Discussion
              • References
Page 3: Fractal measures of spatial pattern as a heuristic for ...sro.sussex.ac.uk/id/eprint/60356/1/150519.full.pdf · fractal measures and persistence exists. We combine theoretical arguments

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many years Initially the study of seemingly intractable complex patterns in time and space waspredominantly a descriptive science [1] However in the latter years of the previous century theoreticaladvancements demonstrated that complex spatio-temporal patterns could be generated as emergentproperties resulting from simple rules [2] This opened the door to understanding the mechanisticbasis of many types of ecological pattern including regular [3] and fractalscale-free geometries [4]However the inverse problem of inferring biological mechanisms from observations and measurementson ecological systems remains a key challenge [5ndash8] In part this is because surprisingly very similarspatial patterns can arise from a wide range of environmental and underlying endogenous processes[9ndash11] In this study we combine theoretical analysis of a simple but generally applicable spatio-temporal simulation model with statistical modelling of independent spatial and temporal datasets froma well-studied ecosystem a temperate seagrass monoculture We explore the theoretical and empiricalrelationships between spatial and temporal measures of underlying dynamics as well as providingsome discussion of the potential and limitations of using spatial metrics in order to quantify ecologicaldynamics

Broadly speaking a spatio-temporal system (such as a spatial vegetative system) will typically have ahigh number of dimensions and attempting to match model and data by comparing the precise locationsof individuals would quickly become intractable for all but trivial system sizes This introduces the ideaof using summary statistics to encapsulate the key information pertaining to the underlying dynamicsof a given ecological growth process [12] Traditionally these techniques have taken the form of statisticsderived from longitudinal measures of the total population size ignoring spatial structure [13ndash15]One important measure of resilience is the return rate or engineering resilience [1617] Given a stableecosystem this measures how long on average it takes before the system returns to the stable equilibriumpoint following a disturbance The return rate quantifies this and can be taken mathematically as thedominant eigenvalue of the dynamic system around the stable equilibrium value However often inorder to gain accurate statistics many sequential observations need to be taken over extended periodsof time By contrast spatial statistics derived from remote sensing techniques have a high number ofdegrees of freedom they can be produced rapidly can generate large amounts of data and therefore intheory may lead to insights similar to those from more classical long-term studies [21819]

The theory of fractals and scaling has numerous applications in ecology and is intimately linkedwith the ideas of spatial dynamics and inferring process from pattern The original theory proposedby Mandelbrot was used to explain certain seemingly ubiquitous patterns in nature [20] Since thistime there has been much tantalizing speculation over using fractal theory to elucidate ecologicallymeaningful parameters from spatial patterns

A major application of fractal theory in ecology is in the scaling of vegetation patch sizes Thedistribution can be described by a power law in certain settings such as semi-arid ecosystems [21]The distribution also tends to develop an increasing truncated tail as the system moves closer to acritical threshold due to increasing environmental pressure [22] This implies that a spatial snapshotof a vegetation distribution can be used to determine if an ecosystem is close to a threshold that wouldlead to ecosystem collapse The truncation of the power law may not universally be an indicator ofecosystem collapse where the simpler measure of coverage may provide a stronger indicator [23] Alsofor diatoms in intertidal mudflats the opposite relationship was found where the truncation of the powerlaw disappeared under increased grazing pressure [24] Until now there has been little direct comparisonbetween the properties of patch sizes for a single snapshot and the long-term trends (over several years)of a vegetation population

Patch-size distributions may also often be viewed as pure power laws with no truncation termcharacterized by a single exponent that determines the patchiness of the spatial pattern The exponent ofa power-law patch-size distribution also known as the Korcak exponent K is defined given a patch areaA and the number of patches observed of that size NA using the relationship

NA sim AminusK

Power-law patch-size distributions that are key to the Korcak exponent are ubiquitous in nature [25]and a variety of ecological models can reproduce such patterns [426] Moreover simple models ofaggregation dynamics which focus on the rate at which patches of differing sizes coagulate can producepatch sizes with power-law distributions and there has been some research to indicate this is a universalphenomenon [2728] The Korcak exponent gives a sense of the patchiness of the spatial pattern andhas been considered in the context of several ecological processes including correlating with grazingpressure on a landscape [29] providing an estimate of patchiness and re-forestation [30] and relating to

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the cover between two species [31] Mandelbrot [20] and subsequently Hastings [25] and Sugihara [32]proposed that there should be a linear relationship between the Korcak exponent and the underlyingdynamics of the process

However although the Korcak exponent and other measures related to persistence can be related forparticular processes in general there is no standard relationship and each measure is independent [33]It therefore remains an open problem whether such fractal exponents are able to give any insight intothe persistence of an ecosystem and where the limitations are

In this paper we explore when there is a relationship between the spatial and dynamic persistenceof an ecosystem and under what scenarios we should expect this relationship to develop In particularwe use eelgrass (Zostera marina) a key marine species around sheltered coastlines as motivation and asource of high-quality ecological data The eelgrass around the Isles of Scilly (located off the southwest tipof Cornwall UK 499 N 63 W) has the key feature that its temporal dynamics can be assembled fromextensive surveys over the past 20 years [34] while its spatial distribution has been assessed from aerialphotography [35] From our understanding of eelgrass dynamics we develop a simple probabilisticcellular automata (PCA) model of clonal growth of vegetation in the presence of an environmentalgradient that limits reproduction we compare and contrast the findings of this model with the dataavailable for eelgrass

2 Lattice-based simulation with environmental gradient21 Model developmentIn order to understand the factors that determine when a relationship between spatial and dynamicpersistence (in terms of rates of return to equilibrium density) occurs we developed an explicit spatialmodel that includes both demographic and environmental factors This allows the study of each of thesefactors separately in order to determine which contribute to the persistence relationship

We develop a mechanistic model for the clonal growth of vegetation in the presence of anenvironmental gradient This model is formulated to capture the known behaviour of eelgrass butcould be parametrized to match a range of ecosystems with a monoculture as the foundation speciesThe gradient can be used to determine the boundary between regions where the clonal species cancolonize and persist and regions where it is unable to do so due to restrictions in the environment(wave energy sea depth temperature etc) For example eelgrass will only colonize coastal regions wheresunlight nutrients and soft-sediment are sufficient hence an obvious environmental gradient that woulddetermine eelgrass growth is sea depth [3637]

We consider a single species of plant that can reproduce by local clonal growth the plants alsoexperience intra-specific competition (competition for nutrients light ground water etc) from theextended local environment which impacts on their reproductive potential Plants are assumed to die ata constant rate The model is formulated as a PCA [3839] based upon similar assumptions to the kineticequation modelling vegetative growth given in [40] Reproduction due to clonal growth or seeding andintra-specific competition are both governed by spatial kernels (kB and kC) that determine the strengthof each process at a given distance The model is defined on a square N times N lattice where each latticesite can either be occupied (1 for short-hand) or unoccupied (0) For ease of explanation we conceptuallyconsider a plant to occupy a single site although this is not necessary for any of the results The fourkey functions that determine the dynamics of this species are λ(x) which captures the environmentalgradient and is purely a function of the location x kB(d) which captures the rate at which new plantsare produced (on unoccupied sites) at a distance d from the plant (a Gaussian function with variance σ 2

1 )kC(d) which measures the degree of competition felt from a plant at distance d (another Gaussian functionwith variance σ 2

2 ) while k determines the strength of this competition on reproductionMathematically this can be written as

Px(0 rarr 1) = λ(x)

⎛⎝ sum

ioccupied

kB(x minus oi)

⎞⎠

⎛⎝1 minus k

sumioccupied

kC(x minus oi)

⎞⎠ (21a)

and

Px(1 rarr 0) = μ (21b)

where oi is the location of the ith occupied site The environmental component λ(x) determines howgrowth is modified by environmental factors and is purely a function of location x λ(x) has two

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components an environmental gradient in a given direction and a site-specific noise term to reflectrandom perturbations

λ(x) = γ lx + ξηx

Here ξ is the strength of noise parameter (ηx are independent Gaussian noise terms with mean zero andvariance one) γ gives the slope of the environmental gradient and l is a unit vector that specifies thedirection of the gradient

22 Model analysisSimulations were performed on a 100 times 100 grid for 6 times 104 time steps after the system has reached anequilibrium state where the density of occupied sites fluctuates around a mean value The dynamic (k μ)spatial (σ1 σ2) and environmental (γ ξ ) parameters were varied between simulations and the Korcakexponent and return rate were calculated for each simulation run

The return rate for the simulation is taken to be the expected rate of change in density around thelong-term equilibrium providing an exact counterpoint to the values calculated from the time-seriesdata For a given spatial pattern at time t the exact probabilities for the births and deaths at eachsite can be calculated and a single stochastic realization of these gives the spatial pattern for the nexttime step A general form of the return rate can thus be calculated by summing over the probabilityof all birth events minus the probability of all death events The expected rate of change of density istherefore E[ρi] = sum

i Pti(B) minus Pti(D) where each site is indexed with i Around the equilibrium pointthis equation is linearized such that E[ρt] = a + bρt The return rate is the gradient of this linear equationb which was calculated through linear regression The system was initialized with the north borderwhere the environmental gradient is at its maximum fully occupied This border was fixed in order toensure stochastic fade-out did not occur Simulations were run until the population reaches statisticalequilibrium this is assessed as equilibrating of the population density Once it has reached statisticalequilibrium the density and expected change in density is recorded for a given number of generationsN Linear regression is then performed on the dataset and the gradient of regression is taken to be thereturn rate

For a given spatial model distribution the Korcak exponent is calculated as follows The size of eachcontinuous cluster of occupied sites is calculated producing a distribution of patch sizes A power-law (Pareto) distribution is fitted to this data with scaling exponent and minimum patch size usinga maximum-likelihood estimator approach The minimum patch size is taken to be 1 pixel (02 times 02 m)in order to compare the model-generated and field-generated data directly and the scaling exponent wasestimated via a standard maximum-likelihood method [41]

For the first investigation dynamic and spatial parameters of the model (corresponding to eelgrassbehaviour) were fixed and the environmental parameters were varied (ξ and γ ) between 0 and 1Assuming each grid cell corresponds to a 20 times 20 cm area dynamic and spatial parameters can be setthat capture the known behaviour of eelgrass The death probability was kept constant at μ = 02 thespatial growth and competition scales were kept constant at σ1 = 05 σ2 = 1 while both high (k = 08)and low (k = 02) competition factors were investigated

For the second investigation the dynamic parameters (k and μ) were varied between 0 and 1 for fixedenvironment and spatial parameters (σ1 = 05 σ2 = 1 γ = 05 ξ = 01)

3 Field survey and aerial photography of seagrass meadowsThe results from the simulation study are directly compared with the spatial and temporal seagrassdata The aim is to find under what circumstances a relationship between the return rate and the Korcakexponent should exist and then determine if such a relationship can be observed in this real system

31 Seagrass meadow locationsWe monitored five seagrass (Z marina) meadows around the Isles of Scilly UK (figure 1 and table 1) from1996 to 2014 using rigorous and consistent methodology [344243]

32 Survey protocolSeagrass was surveyed annually during the first week of August by placing 25 quadrats (025 times 025 m)in each meadow and counting all the shoots visible above the substrate Quadrat positions were

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0lt15 m depth

seagrassMHWS

5 m05 1 2 3 4

km

N

W E

S

Figure 1 The five surveyed sites in The Isles of Scilly UK blt Broad Ledges Tresco la Little Arthur htb Higher Town Bay ogh OldGrimsby Harbour wbl West Broad Ledges Both time-series data in the form of annual surveys and spatial data in the form of a singleaerial survey were conducted (adapted from [35])

Table 1 GPS positions and depths relative to chart datum for the five seagrass survey sites (lsquo+05rsquo indicates this site is exposed at lowwater all other sites are fully sub-tidal)

site latitude and longitude depth (m)

Broad Ledges Tresco 49564prime N 06196prime W 02

Higher Town Bay 49572prime N 06166prime W +05

Little Arthur 49569prime N 06159prime W 10

Old Grimsby Harbour 49576prime N 06198prime W 06

West Broad Ledges 49575prime N 06184prime W 06

predetermined as random rectangular coordinates (x y) translated into polar coordinates (distancebearing) radiating from a chosen focal point Randomization of quadrat locations was renewed eachyear and the maximum distance was 30 m from the focal point close to the centre of each meadow

33 Statistical modellingWe developed a metapopulation dynamic model of seagrass habitat occupancy based on the classicLevins model [44] Suitable habitat is defined as either occupied or vacant The proportion of habitatpatches for meadow i Ni is dependent on colonization and extinction rates with dynamics describedby a logistic function In discrete time this function can follow the standard linearization such thatyti = ai + biNti where yti = log(Nit+1Nit) [45]

In order to calculate the return rate we estimated habitat occupancy as the proportion of replicatequadrats that were occupied by seagrass each year t at each of the five survey sites (i = 1 5) Inits linearized form the metapopulation model can be fitted to spatially replicated seagrass data usinga generalized additive model (GAM) framework regressing y on N with ai represented by sitewisey-axis intercepts and density dependence described using smoothing splines at the individual site level

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[46] The GAM fitting process implements a generalized cross-validation algorithm to assess the optimaldegree of nonlinearity Additionally we captured differences in within-site temporal variance as well asbetween-site correlation by incorporating a full variancendashcovariance matrix estimated directly from thedata (see [47] for full details of the method) The regressed value bi is then taken as the estimate for thereturn rate at site i [1748]

All analysis was performed using R v 312 (R Core Team 2014) with additional functions from thepackages ggmap ggplot2 and mgcv

4 ResultsThe spatial-dynamic persistence relationship was compared when either the environmental parametersor the demographic parameters were varied These relationships were then compared with theseagrass ecosystem where the dynamic persistence was measured from the annual longitudinalstudy and the spatial patchiness was measured from the aerial photographic survey described in themethods

41 SimulationsIn the initial investigation the dynamic and spatial parameters of the model were fixed and theenvironmental parameters were varied The Korcak exponent correlates strongly with the return ratethere is also a high likelihood for each fitted power-law distribution indicating a good fit of the exponent(figure 2ab) The gradient of the relationship was also found to vary depending on whether highcompetition or low competition was present

The environmental noise and gradient terms both have a large impact on the resulting return rate andKorcak exponent of the system (figure 3ab) A higher environmental gradient leads to a higher returnrate with a decreased spatial patchiness (lower Korcak exponent) This effect is also more pronouncedwhen the environmental noise term increases The return rate and spatial patchiness is at its greatestvalue where both the environmental gradient and noise are also at their greatest value

In the second simulation experiment the environmental parameters were fixed and the dynamic andspatial parameters were allowed to vary The resulting Korcak exponent (figure 4) gives no relationshipto the return rate Although the spatial scaling does vary (between 28 and 37) there is no clear emergentrelationship and a linear regression analysis finds no significant trend (p gt 005)

The simulation analysis therefore indicates that a negative-linear relationship is found when sites arenear equilibrium and when only environmental variables vary between sites

42 Seagrass data analysisDensity dependence analysis was undertaken to quantify the return rate of seagrass metapopulations inequilibrium at each survey site Here return rate is the negative of the gradient of the density-dependentresponse around equilibrium [48] Initially the fitted variancendashcovariance matrix was assessed Inclusionof empirical between-site spatial correlations did improve model fit (Likelihood ratio = 344 df = 10p lt 0001) Generalized cross validation showed that a linear functional form rather than smoothingsplines was the best fit at all sites except Old Grimsby Harbour making direct estimation of return ratesstraightforward in all but that case (figure 5) Return rates are shown in table 2 At three survey sitesBroad Ledges Tresco (blt) Higher Town Bay (htb) and West Broad Ledges (wbl) the null hypothesisof random walk dynamics was rejected in favour of density-dependent population regulation [13]However at Little Arthur (la) and Old Grimsby Harbour (ogh) statistically significant return rates couldnot be estimated (figure 5)

Seagrass persisted at all five survey sites throughout the length of the study (figure 5) There wasno evidence of temporal autocorrelation in the time series (Likelihood ratio = 082 p = 037) The onlysite to show a significant linear trend (decline) was Old Grimsby Harbour (t = 396 p lt 0001) We foundthe expected inverse relationship between the power-law exponent of the patch size distribution (theKorcak exponent) and the dynamic return rate for survey sites that were confirmed as having stationarytemporal dynamics (figure 6) However two sites were excluded as they failed to meet this assumptionOld Grimsby Harbour is evidently in sharp decline (figure 5) and Little Arthur while maintaining highpatch occupancy throughout the survey period could not be confirmed as being stationary (figure 5 andtable 2)

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0 01 0210

15

20

25

30

35

return rate

Kor

cak

expo

nent

10

ndash50

ndash100

ndash150

ndash20015

20

25

30

35

Kor

cak

expo

nent

0 01 02return rate

log-

likel

ihoo

d

(a) (b)

Figure 2 Relationship between return rate and Korcak dimension for high and low competition where environmental parameterswere varied Other parameters were kept constant at σ1 = 05 σ2 = 1 and μ = 02 The log-likelihood indicates goodness of fit tothe spatial data where higher values indicate a better fit (a) Korcak dimension (low k) and (b) Korcak dimension (high k)

100018 32

302826242220181614

016014012010008006004002

075

x

g

050

025

100

retu

rn r

ate

Kor

cak

expo

nent

075050025

100

075

x

g

050

025

100075050025

(b)(a)

Figure 3 Resulting values of (a) return rate and (b) Korcak exponent for environmental noise (ξ ) and environmental gradient (γ )where competition (k) is low Both environmental noise and gradient have a large impact on both the static and dynamic properties ofthe system A sharper gradient increases the return rate and this effect is more pronounced for higher environmental noise The gradientterm also decreases the patchiness of the vegetation distribution (lower exponent) and this effect again increases for higher valuesof noise

002 004 006 008 01027

28

29

30

31

32

33

34

35

36

37

Kor

cak

expo

nent

return rate

log-

likel

ihoo

d

minus250

minus200

minus150

minus100

minus50

Figure 4 Varying the dynamic parameters k and μ for fixed spatial and environment parameters σ1 = 05 σ2 = 1 γ = 05 andξ = 01 There is a lack of strong correlation between the Korcak dimension and the return rate

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blt htb wbl la ogh

05

2000 2000 2000 2000 20002010 2010 2010 2010 2010year year year year year

dens

ity o

ccup

ied

quad

rats

log

(Nt+

1N

t)de

nsity

0

06

04

02

0

ndash02

ndash04

10

ndash0604 05 06 07

Nt

08 09 10 04 05 06 07Nt

08 09 10 04 05 06 07Nt

08 09 10 04 05 06 07Nt

08 09 10 04 05 06 07Nt

08 09 10

105

10ndash3

10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10

10

Figure 5 Time-series and patch-size data from five survey sites around the Isles of Scilly UK (blt Broad Ledges Tresco htb Higher TownBay wbl West Broad Ledges la Little Arthur ogh Old Grimsby Harbour) The three sites used in the study are on the left with the twoexcluded on the right Top row Data points represent proportions of occupied 25 times 25 cm quadrats for the years 1996ndash2014Middle rowTransformed data comparing density at year t to log(Nt+1Nt) Regression line for return rate shown in black with 95 confidence limitshown as a red dashed line Bottom row Patch-size distribution for five sites with normalized frequency A solid line with a scaling of 2has been added for clarity

Table 2 Estimated return rates and Korcak exponent for the five seagrass survey sites Also given are the standard error (se) of thereturn rate fit along with the t-value and corresponding p-value and the 95 CIs for the Korcak exponent estimated through bootstrapre-sampling

site return rate se t-value (df= 50) p-value Korcak exponent 95 CI

blt 0857 0307 279 0007 1775 (1773 1776)

htb 0718 0296 233 0023 1869 (1866 1869)

la 0943 0618 152 0134 1761 (1758 1762)

ogh na na na na 1811 (1806 1813)

wbl 0930 0294 304 0004 1740 (1735 1740)

5 DiscussionThere has recently been increasing interest in finding generic spatial indicators of ecosystem pressureor collapse [2249] however until now there has been little validation of these spatial indicatorsagainst long-term population data We have demonstrated for a particular ecosystem under whatcircumstances there should be a connection between the dynamic persistence defined using the returnrate to population equilibrium and the spatial persistence defined using the Korcak exponent Thesimulations derived from a model of a spatial dynamic vegetation system in the presence of demographiccompetition and an environmental gradient demonstrated that a strong relationship exists only whenenvironmental parameters vary between sites This relationship was then compared with a long-termseagrass study where a similar relationship was found for the sites where the return rate couldbe measured

We have found that a relationship between the Korcak exponent and the return rate only exists whencertain factors are present Numerical simulation indicates a strong relationship between the Korcakexponent and the rate of return to equilibrium when only properties of the environment are altered Thisrelationship was supported to a limited extent by data obtained from the long-term study of seagrass To

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9

rsosroyalsocietypublishingorgRSocopensci3150519

return rate05 06 07 08 09 10 11 12 13

Kor

cak

expo

nent

15

16

17

18

19

20

21

BLT

HTB

LA

WBL

95 CI85 CI

Figure 6 Korcak return rate relationship for surveyed vegetation Empirical seagrass data for three sites surveyed is shown as labelledpoints withplusmnse error bars for both return rate and Korcak exponent where the Korcak exponent errors were found through bootstrapre-sampling [50] Although Little Arthur (LA) did not have a statistically significant return rate this has been plotted here for clarityThe diagonal solid band describes the inverse relationship reproduced by the PCA model over a range of environmental parameters Theoverall simulation rate is set using known parameters of death and recruitment for Zostera marina [51] The other simulation parameterswere set arbitrarily and hence show a qualitative as opposed to quantitative similarity with the data

our knowledge this is the first time a direct comparison has been possible between time-series and spatialsnapshot data on the same natural system The strategy of coupling rigorous modelling developmentwith high-quality long-term field study is a powerful approach for making generalizable inferencebased on biologically well-supported assumptions and observation In particular analysis of where thepredicted relationship breaks down in nature where the demographic parameters between locations aresignificantly different provides useful motivation and insight for further theoretical exploration

Using a PCA model we predict a strong negative linear relationship between the Korcak exponentand the return rate over a wide range of parametersmdashin fact all parameters that generate return ratesabove 005 (figure 2) This reversal of the relationship can be observed when there is no environmentalgradient present (figure 3) While variation in environmental parameters gave a strong Korcakndashreturnrate relationship this was not duplicated when the dynamic (species-specific) parameters were varied(figure 4) Instead a very low correlation relationship was found These results highlight the practicalusefulness and potential shortcomings of this method for discerning the return rate and hence persistenceof a species from its spatial pattern The change in gradient due to high- and low-competition (k) valuesalso gives an indication of how comparisons of the Korcak exponent should be implemented (figure 2) Ifendogenous parameters (k σ1 σ2 μ) are fixed then a monotonic relationship is produced with a gradientthat is dependent on those endogenous parameters This suggests that while in some settings the Korcakexponent does correlate with the return rate of the system and thus its persistence this is not true ingeneral Other studies have recently highlighted similar results that generic indicators of a catastrophicshift may not hold generally across all settings [192352]

Our results indicate a Korcakndashpersistence relationship in a long-term study with an aerialphotographic survey Vegetation density data in the form of a 20-year quadrat survey from the Isles ofScilly UK was used to estimate the return rate for five distinct lsquomeadowsrsquo This was compared withthe Korcak exponent measured from the patch-size distribution obtained via an aerial photographicsurvey conducted towards the end of the study The same negatively correlated Korcakndashpersistencerelationship was found from this data and has qualitative agreement with the simulation study subjectto the limitations of assuming equilibrium dynamics already noted The model is simplistic in natureand may not fully capture the variety of complex interactions occurring in a vegetation system indeeddiffering model assumptions can lead to different conclusions based on spatial indicators [1952] Thecomparison between the data and model then is given to illustrate the general form of the relationshipA model with more realistic assumptions and fitted parameters may better reproduce the observedrelationship therefore This gives a tantalizing glimpse of how high-resolution remote-sensing techniquescould support some more traditional ecological survey techniques when answering questions about thedynamical persistence of an ecosystem As has recently been pointed out these spatial techniques would

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10

rsosroyalsocietypublishingorgRSocopensci3150519

be system-dependent and further validation against empirical data is required before drawing robustconclusions from spatial snapshots alone [52]

In the event only three out of five sites assessed showed the predicted relationship between spatialand temporal statistics In both cases where the relationship between spatial and temporal dynamicsfell down it was due to being unable to reliably estimate a return rate from time-series analysis Atone site (Little Arthur) coverage by vegetation was very high for most of the time surveyed Althoughpopulation growth rate and density was reasonably described by a linear relationship (figure 5) thispresented too little information about response to perturbation to derive a statistically significant returnrate The other site not following the predicted relationship was Old Grimsby Harbour which is heavilydisturbed by boat traffic and can be seen to be declining precipitously (figure 5) These cases point tolimitations of classic time-series analysis It would require further validation of the Korcak exponentapproach to confidently use alongside time-series analysis

Sugihara [32] proposed that dynamics could be inferred from complexity of shape They illustratedthis point by using a fractional Brownian motion model where the Hurst exponent could be used todetect the persistence of the generating process Other studies [53] have used this relationship to explorehow measures of persistence can relate to dynamics however there has been no strong quantitative testof whether the spatial persistence of a landscape relates to the temporal persistence Here we have testedthe generality of this hypothesis by precisely defining dynamic persistence and then relating this to theshape of the resulting distribution Overall care must be taken when directly comparing spatial statisticsto temporal ones This general conclusion has also been recently highlighted in the context of comparingtruncations in the patch-size distribution to the proximity to a dynamic threshold [2223] Universalityof fractal growth processes leads to many spatial patterns that are similar in the sense that they sharethe same scaling relationship [54] For a fractal measure to be applied in the context of estimating areturn rate we believe that a strong mechanistic understanding of the underlying growth mechanismsis required which has similarly been found in a study of marine diatoms [24] We have focused onmechanisms where growth is locally positively correlated with surrounding vegetation and negativelycorrelated on larger scales However there may also be other spatially correlated processes in a vegetativesystem that lead to changes in the scaling properties of the system such as grazing [222355] or disease[56] It would be interesting to discern the Korcakndashpersistence relationship where such other factorsare present

Data accessibility The Isles of Scilly dataset including the patch sizes and occupancy for the five meadow sites can befound at httpdxdoiorg105061dryadr95s8Authorsrsquo contributions MAI MJK and JCB conceived the study MAI undertook the modelling with support fromMJK and JCB ELJ EJK KJC and JCB undertook the experimental work MAI MJK and JCB wrote themanuscript with suggestions and comments from all authorsCompeting interests The authors declare they have no competing interestsFunding The research in this article was in part funded by The University of Warwickrsquos EPSRC-funded DoctoralTraining Centre for Complexity Science

References1 Moffat AS 1994 Theoretical ecology winning its

spurs in the real world Science 263 1090ndash1092(doi101126science8108725)

2 Bascompte J Soleacute RV 1995 Rethinking complexitymodelling spatio-temporal dynamics in ecologyTrends Ecol Evol 10 361ndash366 (doi101016S0169-5347(00)89134-X)

3 Rietkerk M Van de Koppel J 2008 Regular patternformation in real ecosystems Trends Ecol Evol 23169ndash175 (doi101016jtree200710013)

4 Pascual M Guichard F 2005 Criticality anddisturbance in spatial ecological systems TrendsEcol Evol 20 88ndash95 (doi101016jtree200411012)

5 McIntire EJ Fajardo A 2009 Beyond description theactive and effective way to infer processes fromspatial patterns Ecology 90 46ndash56 (doi10189007-20961)

6 Borcard D Legendre P Avois-Jacquet C Tuomisto H2004 Dissecting the spatial structure of ecologicaldata at multiple scales Ecology 85 1826ndash1832(doi10189003-3111)

7 Jeltsch F Moloney K Milton SJ 1999 Detectingprocess from snapshot pattern lessons from treespacing in the southern Kalahari Oikos 85451ndash466 (doi1023073546695)

8 Silvertown J Wilson JB 1994 Community structurein a desert perennial community Ecology 75409ndash417 (doi1023071939544)

9 Eppinga MB de Ruiter PC Wassen MJ Rietkerk M2009 Nutrients and hydrology indicate the drivingmechanisms of peatland surface patterningAm Nat 173 803ndash818 (doi101086598487)

10 Liu QX Weerman EJ Herman PM Olff H van deKoppel J 2012 Alternative mechanisms alter theemergent properties of self-organization in mussel

beds Proc R Soc B 279 2744ndash2753(doi101098rspb20120157)

11 Liu QX Doelman A Rottschaumlfer V de Jager MHerman PM Rietkerk M van de Koppela J 2013Phase separation explains a new class ofself-organized spatial patterns in ecologicalsystems Proc Natl Acad Sci USA 110 11 905ndash11 910(doi101073pnas1222339110)

12 Dieckmann U Law R 2000 Relaxation projectionsand the method of moments In The geometry ofecological interactions simplifying spatialcomplexity (eds U Dieckmann R Law JAJ Metz)pp 412ndash455 Cambridge UK Cambridge UniversityPress

13 Dennis B Taper ML 1994 Density dependence intime series observations of natural populationsestimation and testing Ecol Monogr 64 205ndash224(doi1023072937041)

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14 Ives A Dennis B Cottingham K Carpenter S 2003

Estimating community stability and ecologicalinteractions from time-series data Ecol Monogr 73301ndash330 (doi1018900012-9615(2003)073[0301ECSAEI]20CO2)

15 Berryman A Turchin P 2001 Identifying thedensity-dependent structure underlying ecologicaltime series Oikos 92 265ndash270 (doi101034j1600-07062001920208x)

16 Holling CS 1996 Engineering resilience versusecological resilience In Engineering withinecological constraints (ed P Schulze) pp 31ndash44Washington DC National Academy

17 Sibly RM Barker D DenhamMC Hone J Pagel M2005 On the regulation of populations of mammalsbirds fish and insects Science 309 607ndash610(doi101126science1110760)

18 Legendre P Fortin MJ 1989 Spatial pattern andecological analysis Vegetatio 80 107ndash138(doi101007BF00048036)

19 Dakos V Keacutefi S Rietkerk M Van Nes EH Scheffer M2011 Slowing down in spatially patternedecosystems at the brink of collapse Am Nat 177E153ndashE166 (doi101086659945)

20 Mandelbrot BB 1983 The fractal geometry of natureNew York NY Macmillan

21 Scanlon TM Caylor KK Levin SA Rodriguez-Iturbe I2007 Positive feedbacks promote power-lawclustering of Kalahari vegetation Nature 449209ndash212 (doi101038nature06060)

22 Keacutefi S Rietkerk M Alados CL Pueyo Y PapanastasisVP ElAich A de Ruiter PC 2007 Spatial vegetationpatterns and imminent desertification inMediterranean arid ecosystems Nature 449213ndash217 (doi101038nature06111)

23 Maestre FT Escudero A 2009 Is the patch sizedistribution of vegetation a suitable indicator ofdesertification processes Ecology 90 1729ndash1735(doi10189008-20961)

24 Weerman E Van Belzen J Rietkerk M TemmermanS Keacutefi S Herman P Van de Koppel J 2012 Changesin diatom patch-size distribution and degradationin a spatially self-organized intertidal mudflatecosystem Ecology 93 608ndash618(doi10189011-06251)

25 Hastings HM Sugihara G 1993 Fractals a userrsquosguide for the natural sciences Oxford UK OxfordUniversity Press

26 Pascual M Roy M Guichard F Flierl G 2002 Clustersize distributions signatures of selfndashorganization inspatial ecologies Phil Trans R Soc Lond B 357657ndash666 (doi101098rstb20010983)

27 Vicsek T Family F 1984 Dynamic scaling foraggregation of clusters Phys Rev Lett 52 1669(doi101103PhysRevLett521669)

28 Irvine M Bull J Keeling M 2015 Aggregationdynamics explain vegetation patch-size

distributions Theor Popul Biol 108 70ndash74(doi101016jtpb201512001)

29 Xin Xp Gao Q Li Yy Yang Z 1999 Fractal analysis ofgrass patches under grazing and flood disturbancein an Alkaline grassland [J] Acta Bot Sin 41307ndash313

30 Imre AR Cseh D Neteler M Rocchini D 2011 Korcakdimension as a novel indicator of landscapefragmentation and re-forestation Ecol Indicators11 1134ndash1138 (doi101016jecolind201012013)

31 Erlandsson J McQuaid CD Skoumlld M 2011 Patchinessand co-existence of indigenous and invasivemussels at small spatial scales the interactionof facilitation and competition PLoS ONE 6e26958 (doi101371journalpone0026958)

32 Sugihara G May R 1990 Applications of fractals inecology Trends Ecol Evol 5 79ndash86(doi1010160169-5347(90)90235-6)

33 Imre AR Novotny J Rocchini D 2012 TheKorcak-exponent a non-fractal descriptor forlandscape patchiness Ecol Complexity 12 70ndash74(doi101016jecocom201210001)

34 Bull JC Kenyon EJ Cook KJ 2012 Wasting diseaseregulates long-term population dynamics in athreatened seagrass Oecologia 169 135ndash142(doi101007s00442-011-2187-6)

35 Jackson EL Higgs S Allsop T Cathray A Evans JLangmead O 2011 Isles of Scilly seagrass mappingNatural England NECR087

36 Orth RJ Moore KA 1988 Distribution of Zosteramarina L and Ruppia maritima L sensu lato alongdepth gradients in the lower Chesapeake Bay USAAquat Bot 32 291ndash305 (doi1010160304-3770(88)90122-2)

37 Krause-Jensen D Pedersen MF Jensen C 2003Regulation of eelgrass (Zostera marina) cover alongdepth gradients in Danish coastal waters Estuaries26 866ndash877 (doi101007BF02803345)

38 Balzter H Braun PW Koumlhler W 1998 Cellularautomata models for vegetation dynamics EcolModel 107 113ndash125 (doi101016S0304-3800(97)00202-0)

39 Hogeweg P 1988 Cellular automata as aparadigm for ecological modeling Appl MathComput27 81ndash100 (doi1010160096-3003(88)90100-2)

40 Lefever R Lejeune O 1997 On the origin of tigerbush Bull Math Biol 59 263ndash294 (doi101007BF02462004)

41 Clauset A Shalizi CR Newman ME 2009 Power-lawdistributions in empirical data SIAM Rev 51661ndash703 (doi101137070710111)

42 Lobelle D Kenyon EJ Cook KJ Bull JC 2013 Localcompetition and metapopulation processes drive

long-term seagrass-epiphyte population dynamicsPLoS ONE 8 e57072 (doi101371journalpone0057072)

43 Potouroglou M Kenyon EJ Gall A Cook KJ Bull JC2014 The roles of flowering overwinter survival andsea surface temperature in the long-termpopulation dynamics of Zostera marina around theIsles of Scilly UKMar Pollut Bull 83 500ndash507(doi101016jmarpolbul201403035)

44 Levins R 1969 Some demographic and geneticconsequences of environmental heterogeneity forbiological control Bull Entomol Soc Am 15237ndash240 (doi101093besa153237)

45 Royama T 1992 Analytical population dynamicsvol 10 Berlin Germany Springer Science ampBusiness Media

46 Bjoslashrnstad ON Begon M Stenseth NC Falck W SaitSM Thompson DJ 1998 Population dynamics of theIndian meal moth demographic stochasticity anddelayed regulatory mechanisms J Anim Ecol 67110ndash126 (doi101046j1365-2656199800168x)

47 Wood S 2006 Generalized additive models anintroduction with R Boca Raton FL CRC Press

48 Sibly RM Barker D Hone J Pagel M 2007 On thestability of populations of mammals birds fish andinsects Ecol Lett 10 970ndash976(doi101111j1461-0248200701092x)

49 Keacutefi S Rietkerk M Roy M Franc A De Ruiter PCPascual M 2011 Robust scaling in ecosystems andthe meltdown of patch size distributions beforeextinction Ecol Lett 14 29ndash35 (doi101111j1461-0248201001553x)

50 Efron B 1981 Nonparametric estimates of standarderror the jackknife the bootstrap and othermethods Biometrika 68 589ndash599(doi101093biomet683589)

51 Larkum AW Orth RJ Duarte C 2006 Seagrassesbiology ecology and conservation Berlin GermanySpringer

52 Keacutefi S et al 2014 Early warning signals of ecologicaltransitions methods for spatial patterns PLoS ONE9 e92097 (doi101371journalpone0092097)

53 Cunha A Santos R Gaspar A Bairros M 2005Seagrass landscape-scale changes in response todisturbance created by the dynamics ofbarrier-islands a case study from Ria Formosa(Southern Portugal) Estuar Coast Shelf Sci 64636ndash644 (doi101016jecss200503018)

54 Bunde A Havlin S 1991 Fractals and disorderedsystems New York NY Springer

55 Adler P Raff D Lauenroth W 2001 The effect ofgrazing on the spatial heterogeneity of vegetationOecologia 128 465ndash479 (doi101007s004420100737)

56 Packer A Clay K 2000 Soil pathogens and spatialpatterns of seedling mortality in a temperate treeNature 404 278ndash281 (doi10103835005072)

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  • Introduction
  • Lattice-based simulation with environmental gradient
    • Model development
    • Model analysis
      • Field survey and aerial photography of seagrass meadows
        • Seagrass meadow locations
        • Survey protocol
        • Statistical modelling
          • Results
            • Simulations
            • Seagrass data analysis
              • Discussion
              • References
Page 4: Fractal measures of spatial pattern as a heuristic for ...sro.sussex.ac.uk/id/eprint/60356/1/150519.full.pdf · fractal measures and persistence exists. We combine theoretical arguments

3

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the cover between two species [31] Mandelbrot [20] and subsequently Hastings [25] and Sugihara [32]proposed that there should be a linear relationship between the Korcak exponent and the underlyingdynamics of the process

However although the Korcak exponent and other measures related to persistence can be related forparticular processes in general there is no standard relationship and each measure is independent [33]It therefore remains an open problem whether such fractal exponents are able to give any insight intothe persistence of an ecosystem and where the limitations are

In this paper we explore when there is a relationship between the spatial and dynamic persistenceof an ecosystem and under what scenarios we should expect this relationship to develop In particularwe use eelgrass (Zostera marina) a key marine species around sheltered coastlines as motivation and asource of high-quality ecological data The eelgrass around the Isles of Scilly (located off the southwest tipof Cornwall UK 499 N 63 W) has the key feature that its temporal dynamics can be assembled fromextensive surveys over the past 20 years [34] while its spatial distribution has been assessed from aerialphotography [35] From our understanding of eelgrass dynamics we develop a simple probabilisticcellular automata (PCA) model of clonal growth of vegetation in the presence of an environmentalgradient that limits reproduction we compare and contrast the findings of this model with the dataavailable for eelgrass

2 Lattice-based simulation with environmental gradient21 Model developmentIn order to understand the factors that determine when a relationship between spatial and dynamicpersistence (in terms of rates of return to equilibrium density) occurs we developed an explicit spatialmodel that includes both demographic and environmental factors This allows the study of each of thesefactors separately in order to determine which contribute to the persistence relationship

We develop a mechanistic model for the clonal growth of vegetation in the presence of anenvironmental gradient This model is formulated to capture the known behaviour of eelgrass butcould be parametrized to match a range of ecosystems with a monoculture as the foundation speciesThe gradient can be used to determine the boundary between regions where the clonal species cancolonize and persist and regions where it is unable to do so due to restrictions in the environment(wave energy sea depth temperature etc) For example eelgrass will only colonize coastal regions wheresunlight nutrients and soft-sediment are sufficient hence an obvious environmental gradient that woulddetermine eelgrass growth is sea depth [3637]

We consider a single species of plant that can reproduce by local clonal growth the plants alsoexperience intra-specific competition (competition for nutrients light ground water etc) from theextended local environment which impacts on their reproductive potential Plants are assumed to die ata constant rate The model is formulated as a PCA [3839] based upon similar assumptions to the kineticequation modelling vegetative growth given in [40] Reproduction due to clonal growth or seeding andintra-specific competition are both governed by spatial kernels (kB and kC) that determine the strengthof each process at a given distance The model is defined on a square N times N lattice where each latticesite can either be occupied (1 for short-hand) or unoccupied (0) For ease of explanation we conceptuallyconsider a plant to occupy a single site although this is not necessary for any of the results The fourkey functions that determine the dynamics of this species are λ(x) which captures the environmentalgradient and is purely a function of the location x kB(d) which captures the rate at which new plantsare produced (on unoccupied sites) at a distance d from the plant (a Gaussian function with variance σ 2

1 )kC(d) which measures the degree of competition felt from a plant at distance d (another Gaussian functionwith variance σ 2

2 ) while k determines the strength of this competition on reproductionMathematically this can be written as

Px(0 rarr 1) = λ(x)

⎛⎝ sum

ioccupied

kB(x minus oi)

⎞⎠

⎛⎝1 minus k

sumioccupied

kC(x minus oi)

⎞⎠ (21a)

and

Px(1 rarr 0) = μ (21b)

where oi is the location of the ith occupied site The environmental component λ(x) determines howgrowth is modified by environmental factors and is purely a function of location x λ(x) has two

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components an environmental gradient in a given direction and a site-specific noise term to reflectrandom perturbations

λ(x) = γ lx + ξηx

Here ξ is the strength of noise parameter (ηx are independent Gaussian noise terms with mean zero andvariance one) γ gives the slope of the environmental gradient and l is a unit vector that specifies thedirection of the gradient

22 Model analysisSimulations were performed on a 100 times 100 grid for 6 times 104 time steps after the system has reached anequilibrium state where the density of occupied sites fluctuates around a mean value The dynamic (k μ)spatial (σ1 σ2) and environmental (γ ξ ) parameters were varied between simulations and the Korcakexponent and return rate were calculated for each simulation run

The return rate for the simulation is taken to be the expected rate of change in density around thelong-term equilibrium providing an exact counterpoint to the values calculated from the time-seriesdata For a given spatial pattern at time t the exact probabilities for the births and deaths at eachsite can be calculated and a single stochastic realization of these gives the spatial pattern for the nexttime step A general form of the return rate can thus be calculated by summing over the probabilityof all birth events minus the probability of all death events The expected rate of change of density istherefore E[ρi] = sum

i Pti(B) minus Pti(D) where each site is indexed with i Around the equilibrium pointthis equation is linearized such that E[ρt] = a + bρt The return rate is the gradient of this linear equationb which was calculated through linear regression The system was initialized with the north borderwhere the environmental gradient is at its maximum fully occupied This border was fixed in order toensure stochastic fade-out did not occur Simulations were run until the population reaches statisticalequilibrium this is assessed as equilibrating of the population density Once it has reached statisticalequilibrium the density and expected change in density is recorded for a given number of generationsN Linear regression is then performed on the dataset and the gradient of regression is taken to be thereturn rate

For a given spatial model distribution the Korcak exponent is calculated as follows The size of eachcontinuous cluster of occupied sites is calculated producing a distribution of patch sizes A power-law (Pareto) distribution is fitted to this data with scaling exponent and minimum patch size usinga maximum-likelihood estimator approach The minimum patch size is taken to be 1 pixel (02 times 02 m)in order to compare the model-generated and field-generated data directly and the scaling exponent wasestimated via a standard maximum-likelihood method [41]

For the first investigation dynamic and spatial parameters of the model (corresponding to eelgrassbehaviour) were fixed and the environmental parameters were varied (ξ and γ ) between 0 and 1Assuming each grid cell corresponds to a 20 times 20 cm area dynamic and spatial parameters can be setthat capture the known behaviour of eelgrass The death probability was kept constant at μ = 02 thespatial growth and competition scales were kept constant at σ1 = 05 σ2 = 1 while both high (k = 08)and low (k = 02) competition factors were investigated

For the second investigation the dynamic parameters (k and μ) were varied between 0 and 1 for fixedenvironment and spatial parameters (σ1 = 05 σ2 = 1 γ = 05 ξ = 01)

3 Field survey and aerial photography of seagrass meadowsThe results from the simulation study are directly compared with the spatial and temporal seagrassdata The aim is to find under what circumstances a relationship between the return rate and the Korcakexponent should exist and then determine if such a relationship can be observed in this real system

31 Seagrass meadow locationsWe monitored five seagrass (Z marina) meadows around the Isles of Scilly UK (figure 1 and table 1) from1996 to 2014 using rigorous and consistent methodology [344243]

32 Survey protocolSeagrass was surveyed annually during the first week of August by placing 25 quadrats (025 times 025 m)in each meadow and counting all the shoots visible above the substrate Quadrat positions were

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0lt15 m depth

seagrassMHWS

5 m05 1 2 3 4

km

N

W E

S

Figure 1 The five surveyed sites in The Isles of Scilly UK blt Broad Ledges Tresco la Little Arthur htb Higher Town Bay ogh OldGrimsby Harbour wbl West Broad Ledges Both time-series data in the form of annual surveys and spatial data in the form of a singleaerial survey were conducted (adapted from [35])

Table 1 GPS positions and depths relative to chart datum for the five seagrass survey sites (lsquo+05rsquo indicates this site is exposed at lowwater all other sites are fully sub-tidal)

site latitude and longitude depth (m)

Broad Ledges Tresco 49564prime N 06196prime W 02

Higher Town Bay 49572prime N 06166prime W +05

Little Arthur 49569prime N 06159prime W 10

Old Grimsby Harbour 49576prime N 06198prime W 06

West Broad Ledges 49575prime N 06184prime W 06

predetermined as random rectangular coordinates (x y) translated into polar coordinates (distancebearing) radiating from a chosen focal point Randomization of quadrat locations was renewed eachyear and the maximum distance was 30 m from the focal point close to the centre of each meadow

33 Statistical modellingWe developed a metapopulation dynamic model of seagrass habitat occupancy based on the classicLevins model [44] Suitable habitat is defined as either occupied or vacant The proportion of habitatpatches for meadow i Ni is dependent on colonization and extinction rates with dynamics describedby a logistic function In discrete time this function can follow the standard linearization such thatyti = ai + biNti where yti = log(Nit+1Nit) [45]

In order to calculate the return rate we estimated habitat occupancy as the proportion of replicatequadrats that were occupied by seagrass each year t at each of the five survey sites (i = 1 5) Inits linearized form the metapopulation model can be fitted to spatially replicated seagrass data usinga generalized additive model (GAM) framework regressing y on N with ai represented by sitewisey-axis intercepts and density dependence described using smoothing splines at the individual site level

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[46] The GAM fitting process implements a generalized cross-validation algorithm to assess the optimaldegree of nonlinearity Additionally we captured differences in within-site temporal variance as well asbetween-site correlation by incorporating a full variancendashcovariance matrix estimated directly from thedata (see [47] for full details of the method) The regressed value bi is then taken as the estimate for thereturn rate at site i [1748]

All analysis was performed using R v 312 (R Core Team 2014) with additional functions from thepackages ggmap ggplot2 and mgcv

4 ResultsThe spatial-dynamic persistence relationship was compared when either the environmental parametersor the demographic parameters were varied These relationships were then compared with theseagrass ecosystem where the dynamic persistence was measured from the annual longitudinalstudy and the spatial patchiness was measured from the aerial photographic survey described in themethods

41 SimulationsIn the initial investigation the dynamic and spatial parameters of the model were fixed and theenvironmental parameters were varied The Korcak exponent correlates strongly with the return ratethere is also a high likelihood for each fitted power-law distribution indicating a good fit of the exponent(figure 2ab) The gradient of the relationship was also found to vary depending on whether highcompetition or low competition was present

The environmental noise and gradient terms both have a large impact on the resulting return rate andKorcak exponent of the system (figure 3ab) A higher environmental gradient leads to a higher returnrate with a decreased spatial patchiness (lower Korcak exponent) This effect is also more pronouncedwhen the environmental noise term increases The return rate and spatial patchiness is at its greatestvalue where both the environmental gradient and noise are also at their greatest value

In the second simulation experiment the environmental parameters were fixed and the dynamic andspatial parameters were allowed to vary The resulting Korcak exponent (figure 4) gives no relationshipto the return rate Although the spatial scaling does vary (between 28 and 37) there is no clear emergentrelationship and a linear regression analysis finds no significant trend (p gt 005)

The simulation analysis therefore indicates that a negative-linear relationship is found when sites arenear equilibrium and when only environmental variables vary between sites

42 Seagrass data analysisDensity dependence analysis was undertaken to quantify the return rate of seagrass metapopulations inequilibrium at each survey site Here return rate is the negative of the gradient of the density-dependentresponse around equilibrium [48] Initially the fitted variancendashcovariance matrix was assessed Inclusionof empirical between-site spatial correlations did improve model fit (Likelihood ratio = 344 df = 10p lt 0001) Generalized cross validation showed that a linear functional form rather than smoothingsplines was the best fit at all sites except Old Grimsby Harbour making direct estimation of return ratesstraightforward in all but that case (figure 5) Return rates are shown in table 2 At three survey sitesBroad Ledges Tresco (blt) Higher Town Bay (htb) and West Broad Ledges (wbl) the null hypothesisof random walk dynamics was rejected in favour of density-dependent population regulation [13]However at Little Arthur (la) and Old Grimsby Harbour (ogh) statistically significant return rates couldnot be estimated (figure 5)

Seagrass persisted at all five survey sites throughout the length of the study (figure 5) There wasno evidence of temporal autocorrelation in the time series (Likelihood ratio = 082 p = 037) The onlysite to show a significant linear trend (decline) was Old Grimsby Harbour (t = 396 p lt 0001) We foundthe expected inverse relationship between the power-law exponent of the patch size distribution (theKorcak exponent) and the dynamic return rate for survey sites that were confirmed as having stationarytemporal dynamics (figure 6) However two sites were excluded as they failed to meet this assumptionOld Grimsby Harbour is evidently in sharp decline (figure 5) and Little Arthur while maintaining highpatch occupancy throughout the survey period could not be confirmed as being stationary (figure 5 andtable 2)

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

7

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0 01 0210

15

20

25

30

35

return rate

Kor

cak

expo

nent

10

ndash50

ndash100

ndash150

ndash20015

20

25

30

35

Kor

cak

expo

nent

0 01 02return rate

log-

likel

ihoo

d

(a) (b)

Figure 2 Relationship between return rate and Korcak dimension for high and low competition where environmental parameterswere varied Other parameters were kept constant at σ1 = 05 σ2 = 1 and μ = 02 The log-likelihood indicates goodness of fit tothe spatial data where higher values indicate a better fit (a) Korcak dimension (low k) and (b) Korcak dimension (high k)

100018 32

302826242220181614

016014012010008006004002

075

x

g

050

025

100

retu

rn r

ate

Kor

cak

expo

nent

075050025

100

075

x

g

050

025

100075050025

(b)(a)

Figure 3 Resulting values of (a) return rate and (b) Korcak exponent for environmental noise (ξ ) and environmental gradient (γ )where competition (k) is low Both environmental noise and gradient have a large impact on both the static and dynamic properties ofthe system A sharper gradient increases the return rate and this effect is more pronounced for higher environmental noise The gradientterm also decreases the patchiness of the vegetation distribution (lower exponent) and this effect again increases for higher valuesof noise

002 004 006 008 01027

28

29

30

31

32

33

34

35

36

37

Kor

cak

expo

nent

return rate

log-

likel

ihoo

d

minus250

minus200

minus150

minus100

minus50

Figure 4 Varying the dynamic parameters k and μ for fixed spatial and environment parameters σ1 = 05 σ2 = 1 γ = 05 andξ = 01 There is a lack of strong correlation between the Korcak dimension and the return rate

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

8

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blt htb wbl la ogh

05

2000 2000 2000 2000 20002010 2010 2010 2010 2010year year year year year

dens

ity o

ccup

ied

quad

rats

log

(Nt+

1N

t)de

nsity

0

06

04

02

0

ndash02

ndash04

10

ndash0604 05 06 07

Nt

08 09 10 04 05 06 07Nt

08 09 10 04 05 06 07Nt

08 09 10 04 05 06 07Nt

08 09 10 04 05 06 07Nt

08 09 10

105

10ndash3

10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10

10

Figure 5 Time-series and patch-size data from five survey sites around the Isles of Scilly UK (blt Broad Ledges Tresco htb Higher TownBay wbl West Broad Ledges la Little Arthur ogh Old Grimsby Harbour) The three sites used in the study are on the left with the twoexcluded on the right Top row Data points represent proportions of occupied 25 times 25 cm quadrats for the years 1996ndash2014Middle rowTransformed data comparing density at year t to log(Nt+1Nt) Regression line for return rate shown in black with 95 confidence limitshown as a red dashed line Bottom row Patch-size distribution for five sites with normalized frequency A solid line with a scaling of 2has been added for clarity

Table 2 Estimated return rates and Korcak exponent for the five seagrass survey sites Also given are the standard error (se) of thereturn rate fit along with the t-value and corresponding p-value and the 95 CIs for the Korcak exponent estimated through bootstrapre-sampling

site return rate se t-value (df= 50) p-value Korcak exponent 95 CI

blt 0857 0307 279 0007 1775 (1773 1776)

htb 0718 0296 233 0023 1869 (1866 1869)

la 0943 0618 152 0134 1761 (1758 1762)

ogh na na na na 1811 (1806 1813)

wbl 0930 0294 304 0004 1740 (1735 1740)

5 DiscussionThere has recently been increasing interest in finding generic spatial indicators of ecosystem pressureor collapse [2249] however until now there has been little validation of these spatial indicatorsagainst long-term population data We have demonstrated for a particular ecosystem under whatcircumstances there should be a connection between the dynamic persistence defined using the returnrate to population equilibrium and the spatial persistence defined using the Korcak exponent Thesimulations derived from a model of a spatial dynamic vegetation system in the presence of demographiccompetition and an environmental gradient demonstrated that a strong relationship exists only whenenvironmental parameters vary between sites This relationship was then compared with a long-termseagrass study where a similar relationship was found for the sites where the return rate couldbe measured

We have found that a relationship between the Korcak exponent and the return rate only exists whencertain factors are present Numerical simulation indicates a strong relationship between the Korcakexponent and the rate of return to equilibrium when only properties of the environment are altered Thisrelationship was supported to a limited extent by data obtained from the long-term study of seagrass To

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9

rsosroyalsocietypublishingorgRSocopensci3150519

return rate05 06 07 08 09 10 11 12 13

Kor

cak

expo

nent

15

16

17

18

19

20

21

BLT

HTB

LA

WBL

95 CI85 CI

Figure 6 Korcak return rate relationship for surveyed vegetation Empirical seagrass data for three sites surveyed is shown as labelledpoints withplusmnse error bars for both return rate and Korcak exponent where the Korcak exponent errors were found through bootstrapre-sampling [50] Although Little Arthur (LA) did not have a statistically significant return rate this has been plotted here for clarityThe diagonal solid band describes the inverse relationship reproduced by the PCA model over a range of environmental parameters Theoverall simulation rate is set using known parameters of death and recruitment for Zostera marina [51] The other simulation parameterswere set arbitrarily and hence show a qualitative as opposed to quantitative similarity with the data

our knowledge this is the first time a direct comparison has been possible between time-series and spatialsnapshot data on the same natural system The strategy of coupling rigorous modelling developmentwith high-quality long-term field study is a powerful approach for making generalizable inferencebased on biologically well-supported assumptions and observation In particular analysis of where thepredicted relationship breaks down in nature where the demographic parameters between locations aresignificantly different provides useful motivation and insight for further theoretical exploration

Using a PCA model we predict a strong negative linear relationship between the Korcak exponentand the return rate over a wide range of parametersmdashin fact all parameters that generate return ratesabove 005 (figure 2) This reversal of the relationship can be observed when there is no environmentalgradient present (figure 3) While variation in environmental parameters gave a strong Korcakndashreturnrate relationship this was not duplicated when the dynamic (species-specific) parameters were varied(figure 4) Instead a very low correlation relationship was found These results highlight the practicalusefulness and potential shortcomings of this method for discerning the return rate and hence persistenceof a species from its spatial pattern The change in gradient due to high- and low-competition (k) valuesalso gives an indication of how comparisons of the Korcak exponent should be implemented (figure 2) Ifendogenous parameters (k σ1 σ2 μ) are fixed then a monotonic relationship is produced with a gradientthat is dependent on those endogenous parameters This suggests that while in some settings the Korcakexponent does correlate with the return rate of the system and thus its persistence this is not true ingeneral Other studies have recently highlighted similar results that generic indicators of a catastrophicshift may not hold generally across all settings [192352]

Our results indicate a Korcakndashpersistence relationship in a long-term study with an aerialphotographic survey Vegetation density data in the form of a 20-year quadrat survey from the Isles ofScilly UK was used to estimate the return rate for five distinct lsquomeadowsrsquo This was compared withthe Korcak exponent measured from the patch-size distribution obtained via an aerial photographicsurvey conducted towards the end of the study The same negatively correlated Korcakndashpersistencerelationship was found from this data and has qualitative agreement with the simulation study subjectto the limitations of assuming equilibrium dynamics already noted The model is simplistic in natureand may not fully capture the variety of complex interactions occurring in a vegetation system indeeddiffering model assumptions can lead to different conclusions based on spatial indicators [1952] Thecomparison between the data and model then is given to illustrate the general form of the relationshipA model with more realistic assumptions and fitted parameters may better reproduce the observedrelationship therefore This gives a tantalizing glimpse of how high-resolution remote-sensing techniquescould support some more traditional ecological survey techniques when answering questions about thedynamical persistence of an ecosystem As has recently been pointed out these spatial techniques would

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10

rsosroyalsocietypublishingorgRSocopensci3150519

be system-dependent and further validation against empirical data is required before drawing robustconclusions from spatial snapshots alone [52]

In the event only three out of five sites assessed showed the predicted relationship between spatialand temporal statistics In both cases where the relationship between spatial and temporal dynamicsfell down it was due to being unable to reliably estimate a return rate from time-series analysis Atone site (Little Arthur) coverage by vegetation was very high for most of the time surveyed Althoughpopulation growth rate and density was reasonably described by a linear relationship (figure 5) thispresented too little information about response to perturbation to derive a statistically significant returnrate The other site not following the predicted relationship was Old Grimsby Harbour which is heavilydisturbed by boat traffic and can be seen to be declining precipitously (figure 5) These cases point tolimitations of classic time-series analysis It would require further validation of the Korcak exponentapproach to confidently use alongside time-series analysis

Sugihara [32] proposed that dynamics could be inferred from complexity of shape They illustratedthis point by using a fractional Brownian motion model where the Hurst exponent could be used todetect the persistence of the generating process Other studies [53] have used this relationship to explorehow measures of persistence can relate to dynamics however there has been no strong quantitative testof whether the spatial persistence of a landscape relates to the temporal persistence Here we have testedthe generality of this hypothesis by precisely defining dynamic persistence and then relating this to theshape of the resulting distribution Overall care must be taken when directly comparing spatial statisticsto temporal ones This general conclusion has also been recently highlighted in the context of comparingtruncations in the patch-size distribution to the proximity to a dynamic threshold [2223] Universalityof fractal growth processes leads to many spatial patterns that are similar in the sense that they sharethe same scaling relationship [54] For a fractal measure to be applied in the context of estimating areturn rate we believe that a strong mechanistic understanding of the underlying growth mechanismsis required which has similarly been found in a study of marine diatoms [24] We have focused onmechanisms where growth is locally positively correlated with surrounding vegetation and negativelycorrelated on larger scales However there may also be other spatially correlated processes in a vegetativesystem that lead to changes in the scaling properties of the system such as grazing [222355] or disease[56] It would be interesting to discern the Korcakndashpersistence relationship where such other factorsare present

Data accessibility The Isles of Scilly dataset including the patch sizes and occupancy for the five meadow sites can befound at httpdxdoiorg105061dryadr95s8Authorsrsquo contributions MAI MJK and JCB conceived the study MAI undertook the modelling with support fromMJK and JCB ELJ EJK KJC and JCB undertook the experimental work MAI MJK and JCB wrote themanuscript with suggestions and comments from all authorsCompeting interests The authors declare they have no competing interestsFunding The research in this article was in part funded by The University of Warwickrsquos EPSRC-funded DoctoralTraining Centre for Complexity Science

References1 Moffat AS 1994 Theoretical ecology winning its

spurs in the real world Science 263 1090ndash1092(doi101126science8108725)

2 Bascompte J Soleacute RV 1995 Rethinking complexitymodelling spatio-temporal dynamics in ecologyTrends Ecol Evol 10 361ndash366 (doi101016S0169-5347(00)89134-X)

3 Rietkerk M Van de Koppel J 2008 Regular patternformation in real ecosystems Trends Ecol Evol 23169ndash175 (doi101016jtree200710013)

4 Pascual M Guichard F 2005 Criticality anddisturbance in spatial ecological systems TrendsEcol Evol 20 88ndash95 (doi101016jtree200411012)

5 McIntire EJ Fajardo A 2009 Beyond description theactive and effective way to infer processes fromspatial patterns Ecology 90 46ndash56 (doi10189007-20961)

6 Borcard D Legendre P Avois-Jacquet C Tuomisto H2004 Dissecting the spatial structure of ecologicaldata at multiple scales Ecology 85 1826ndash1832(doi10189003-3111)

7 Jeltsch F Moloney K Milton SJ 1999 Detectingprocess from snapshot pattern lessons from treespacing in the southern Kalahari Oikos 85451ndash466 (doi1023073546695)

8 Silvertown J Wilson JB 1994 Community structurein a desert perennial community Ecology 75409ndash417 (doi1023071939544)

9 Eppinga MB de Ruiter PC Wassen MJ Rietkerk M2009 Nutrients and hydrology indicate the drivingmechanisms of peatland surface patterningAm Nat 173 803ndash818 (doi101086598487)

10 Liu QX Weerman EJ Herman PM Olff H van deKoppel J 2012 Alternative mechanisms alter theemergent properties of self-organization in mussel

beds Proc R Soc B 279 2744ndash2753(doi101098rspb20120157)

11 Liu QX Doelman A Rottschaumlfer V de Jager MHerman PM Rietkerk M van de Koppela J 2013Phase separation explains a new class ofself-organized spatial patterns in ecologicalsystems Proc Natl Acad Sci USA 110 11 905ndash11 910(doi101073pnas1222339110)

12 Dieckmann U Law R 2000 Relaxation projectionsand the method of moments In The geometry ofecological interactions simplifying spatialcomplexity (eds U Dieckmann R Law JAJ Metz)pp 412ndash455 Cambridge UK Cambridge UniversityPress

13 Dennis B Taper ML 1994 Density dependence intime series observations of natural populationsestimation and testing Ecol Monogr 64 205ndash224(doi1023072937041)

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14 Ives A Dennis B Cottingham K Carpenter S 2003

Estimating community stability and ecologicalinteractions from time-series data Ecol Monogr 73301ndash330 (doi1018900012-9615(2003)073[0301ECSAEI]20CO2)

15 Berryman A Turchin P 2001 Identifying thedensity-dependent structure underlying ecologicaltime series Oikos 92 265ndash270 (doi101034j1600-07062001920208x)

16 Holling CS 1996 Engineering resilience versusecological resilience In Engineering withinecological constraints (ed P Schulze) pp 31ndash44Washington DC National Academy

17 Sibly RM Barker D DenhamMC Hone J Pagel M2005 On the regulation of populations of mammalsbirds fish and insects Science 309 607ndash610(doi101126science1110760)

18 Legendre P Fortin MJ 1989 Spatial pattern andecological analysis Vegetatio 80 107ndash138(doi101007BF00048036)

19 Dakos V Keacutefi S Rietkerk M Van Nes EH Scheffer M2011 Slowing down in spatially patternedecosystems at the brink of collapse Am Nat 177E153ndashE166 (doi101086659945)

20 Mandelbrot BB 1983 The fractal geometry of natureNew York NY Macmillan

21 Scanlon TM Caylor KK Levin SA Rodriguez-Iturbe I2007 Positive feedbacks promote power-lawclustering of Kalahari vegetation Nature 449209ndash212 (doi101038nature06060)

22 Keacutefi S Rietkerk M Alados CL Pueyo Y PapanastasisVP ElAich A de Ruiter PC 2007 Spatial vegetationpatterns and imminent desertification inMediterranean arid ecosystems Nature 449213ndash217 (doi101038nature06111)

23 Maestre FT Escudero A 2009 Is the patch sizedistribution of vegetation a suitable indicator ofdesertification processes Ecology 90 1729ndash1735(doi10189008-20961)

24 Weerman E Van Belzen J Rietkerk M TemmermanS Keacutefi S Herman P Van de Koppel J 2012 Changesin diatom patch-size distribution and degradationin a spatially self-organized intertidal mudflatecosystem Ecology 93 608ndash618(doi10189011-06251)

25 Hastings HM Sugihara G 1993 Fractals a userrsquosguide for the natural sciences Oxford UK OxfordUniversity Press

26 Pascual M Roy M Guichard F Flierl G 2002 Clustersize distributions signatures of selfndashorganization inspatial ecologies Phil Trans R Soc Lond B 357657ndash666 (doi101098rstb20010983)

27 Vicsek T Family F 1984 Dynamic scaling foraggregation of clusters Phys Rev Lett 52 1669(doi101103PhysRevLett521669)

28 Irvine M Bull J Keeling M 2015 Aggregationdynamics explain vegetation patch-size

distributions Theor Popul Biol 108 70ndash74(doi101016jtpb201512001)

29 Xin Xp Gao Q Li Yy Yang Z 1999 Fractal analysis ofgrass patches under grazing and flood disturbancein an Alkaline grassland [J] Acta Bot Sin 41307ndash313

30 Imre AR Cseh D Neteler M Rocchini D 2011 Korcakdimension as a novel indicator of landscapefragmentation and re-forestation Ecol Indicators11 1134ndash1138 (doi101016jecolind201012013)

31 Erlandsson J McQuaid CD Skoumlld M 2011 Patchinessand co-existence of indigenous and invasivemussels at small spatial scales the interactionof facilitation and competition PLoS ONE 6e26958 (doi101371journalpone0026958)

32 Sugihara G May R 1990 Applications of fractals inecology Trends Ecol Evol 5 79ndash86(doi1010160169-5347(90)90235-6)

33 Imre AR Novotny J Rocchini D 2012 TheKorcak-exponent a non-fractal descriptor forlandscape patchiness Ecol Complexity 12 70ndash74(doi101016jecocom201210001)

34 Bull JC Kenyon EJ Cook KJ 2012 Wasting diseaseregulates long-term population dynamics in athreatened seagrass Oecologia 169 135ndash142(doi101007s00442-011-2187-6)

35 Jackson EL Higgs S Allsop T Cathray A Evans JLangmead O 2011 Isles of Scilly seagrass mappingNatural England NECR087

36 Orth RJ Moore KA 1988 Distribution of Zosteramarina L and Ruppia maritima L sensu lato alongdepth gradients in the lower Chesapeake Bay USAAquat Bot 32 291ndash305 (doi1010160304-3770(88)90122-2)

37 Krause-Jensen D Pedersen MF Jensen C 2003Regulation of eelgrass (Zostera marina) cover alongdepth gradients in Danish coastal waters Estuaries26 866ndash877 (doi101007BF02803345)

38 Balzter H Braun PW Koumlhler W 1998 Cellularautomata models for vegetation dynamics EcolModel 107 113ndash125 (doi101016S0304-3800(97)00202-0)

39 Hogeweg P 1988 Cellular automata as aparadigm for ecological modeling Appl MathComput27 81ndash100 (doi1010160096-3003(88)90100-2)

40 Lefever R Lejeune O 1997 On the origin of tigerbush Bull Math Biol 59 263ndash294 (doi101007BF02462004)

41 Clauset A Shalizi CR Newman ME 2009 Power-lawdistributions in empirical data SIAM Rev 51661ndash703 (doi101137070710111)

42 Lobelle D Kenyon EJ Cook KJ Bull JC 2013 Localcompetition and metapopulation processes drive

long-term seagrass-epiphyte population dynamicsPLoS ONE 8 e57072 (doi101371journalpone0057072)

43 Potouroglou M Kenyon EJ Gall A Cook KJ Bull JC2014 The roles of flowering overwinter survival andsea surface temperature in the long-termpopulation dynamics of Zostera marina around theIsles of Scilly UKMar Pollut Bull 83 500ndash507(doi101016jmarpolbul201403035)

44 Levins R 1969 Some demographic and geneticconsequences of environmental heterogeneity forbiological control Bull Entomol Soc Am 15237ndash240 (doi101093besa153237)

45 Royama T 1992 Analytical population dynamicsvol 10 Berlin Germany Springer Science ampBusiness Media

46 Bjoslashrnstad ON Begon M Stenseth NC Falck W SaitSM Thompson DJ 1998 Population dynamics of theIndian meal moth demographic stochasticity anddelayed regulatory mechanisms J Anim Ecol 67110ndash126 (doi101046j1365-2656199800168x)

47 Wood S 2006 Generalized additive models anintroduction with R Boca Raton FL CRC Press

48 Sibly RM Barker D Hone J Pagel M 2007 On thestability of populations of mammals birds fish andinsects Ecol Lett 10 970ndash976(doi101111j1461-0248200701092x)

49 Keacutefi S Rietkerk M Roy M Franc A De Ruiter PCPascual M 2011 Robust scaling in ecosystems andthe meltdown of patch size distributions beforeextinction Ecol Lett 14 29ndash35 (doi101111j1461-0248201001553x)

50 Efron B 1981 Nonparametric estimates of standarderror the jackknife the bootstrap and othermethods Biometrika 68 589ndash599(doi101093biomet683589)

51 Larkum AW Orth RJ Duarte C 2006 Seagrassesbiology ecology and conservation Berlin GermanySpringer

52 Keacutefi S et al 2014 Early warning signals of ecologicaltransitions methods for spatial patterns PLoS ONE9 e92097 (doi101371journalpone0092097)

53 Cunha A Santos R Gaspar A Bairros M 2005Seagrass landscape-scale changes in response todisturbance created by the dynamics ofbarrier-islands a case study from Ria Formosa(Southern Portugal) Estuar Coast Shelf Sci 64636ndash644 (doi101016jecss200503018)

54 Bunde A Havlin S 1991 Fractals and disorderedsystems New York NY Springer

55 Adler P Raff D Lauenroth W 2001 The effect ofgrazing on the spatial heterogeneity of vegetationOecologia 128 465ndash479 (doi101007s004420100737)

56 Packer A Clay K 2000 Soil pathogens and spatialpatterns of seedling mortality in a temperate treeNature 404 278ndash281 (doi10103835005072)

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

  • Introduction
  • Lattice-based simulation with environmental gradient
    • Model development
    • Model analysis
      • Field survey and aerial photography of seagrass meadows
        • Seagrass meadow locations
        • Survey protocol
        • Statistical modelling
          • Results
            • Simulations
            • Seagrass data analysis
              • Discussion
              • References
Page 5: Fractal measures of spatial pattern as a heuristic for ...sro.sussex.ac.uk/id/eprint/60356/1/150519.full.pdf · fractal measures and persistence exists. We combine theoretical arguments

4

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components an environmental gradient in a given direction and a site-specific noise term to reflectrandom perturbations

λ(x) = γ lx + ξηx

Here ξ is the strength of noise parameter (ηx are independent Gaussian noise terms with mean zero andvariance one) γ gives the slope of the environmental gradient and l is a unit vector that specifies thedirection of the gradient

22 Model analysisSimulations were performed on a 100 times 100 grid for 6 times 104 time steps after the system has reached anequilibrium state where the density of occupied sites fluctuates around a mean value The dynamic (k μ)spatial (σ1 σ2) and environmental (γ ξ ) parameters were varied between simulations and the Korcakexponent and return rate were calculated for each simulation run

The return rate for the simulation is taken to be the expected rate of change in density around thelong-term equilibrium providing an exact counterpoint to the values calculated from the time-seriesdata For a given spatial pattern at time t the exact probabilities for the births and deaths at eachsite can be calculated and a single stochastic realization of these gives the spatial pattern for the nexttime step A general form of the return rate can thus be calculated by summing over the probabilityof all birth events minus the probability of all death events The expected rate of change of density istherefore E[ρi] = sum

i Pti(B) minus Pti(D) where each site is indexed with i Around the equilibrium pointthis equation is linearized such that E[ρt] = a + bρt The return rate is the gradient of this linear equationb which was calculated through linear regression The system was initialized with the north borderwhere the environmental gradient is at its maximum fully occupied This border was fixed in order toensure stochastic fade-out did not occur Simulations were run until the population reaches statisticalequilibrium this is assessed as equilibrating of the population density Once it has reached statisticalequilibrium the density and expected change in density is recorded for a given number of generationsN Linear regression is then performed on the dataset and the gradient of regression is taken to be thereturn rate

For a given spatial model distribution the Korcak exponent is calculated as follows The size of eachcontinuous cluster of occupied sites is calculated producing a distribution of patch sizes A power-law (Pareto) distribution is fitted to this data with scaling exponent and minimum patch size usinga maximum-likelihood estimator approach The minimum patch size is taken to be 1 pixel (02 times 02 m)in order to compare the model-generated and field-generated data directly and the scaling exponent wasestimated via a standard maximum-likelihood method [41]

For the first investigation dynamic and spatial parameters of the model (corresponding to eelgrassbehaviour) were fixed and the environmental parameters were varied (ξ and γ ) between 0 and 1Assuming each grid cell corresponds to a 20 times 20 cm area dynamic and spatial parameters can be setthat capture the known behaviour of eelgrass The death probability was kept constant at μ = 02 thespatial growth and competition scales were kept constant at σ1 = 05 σ2 = 1 while both high (k = 08)and low (k = 02) competition factors were investigated

For the second investigation the dynamic parameters (k and μ) were varied between 0 and 1 for fixedenvironment and spatial parameters (σ1 = 05 σ2 = 1 γ = 05 ξ = 01)

3 Field survey and aerial photography of seagrass meadowsThe results from the simulation study are directly compared with the spatial and temporal seagrassdata The aim is to find under what circumstances a relationship between the return rate and the Korcakexponent should exist and then determine if such a relationship can be observed in this real system

31 Seagrass meadow locationsWe monitored five seagrass (Z marina) meadows around the Isles of Scilly UK (figure 1 and table 1) from1996 to 2014 using rigorous and consistent methodology [344243]

32 Survey protocolSeagrass was surveyed annually during the first week of August by placing 25 quadrats (025 times 025 m)in each meadow and counting all the shoots visible above the substrate Quadrat positions were

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0lt15 m depth

seagrassMHWS

5 m05 1 2 3 4

km

N

W E

S

Figure 1 The five surveyed sites in The Isles of Scilly UK blt Broad Ledges Tresco la Little Arthur htb Higher Town Bay ogh OldGrimsby Harbour wbl West Broad Ledges Both time-series data in the form of annual surveys and spatial data in the form of a singleaerial survey were conducted (adapted from [35])

Table 1 GPS positions and depths relative to chart datum for the five seagrass survey sites (lsquo+05rsquo indicates this site is exposed at lowwater all other sites are fully sub-tidal)

site latitude and longitude depth (m)

Broad Ledges Tresco 49564prime N 06196prime W 02

Higher Town Bay 49572prime N 06166prime W +05

Little Arthur 49569prime N 06159prime W 10

Old Grimsby Harbour 49576prime N 06198prime W 06

West Broad Ledges 49575prime N 06184prime W 06

predetermined as random rectangular coordinates (x y) translated into polar coordinates (distancebearing) radiating from a chosen focal point Randomization of quadrat locations was renewed eachyear and the maximum distance was 30 m from the focal point close to the centre of each meadow

33 Statistical modellingWe developed a metapopulation dynamic model of seagrass habitat occupancy based on the classicLevins model [44] Suitable habitat is defined as either occupied or vacant The proportion of habitatpatches for meadow i Ni is dependent on colonization and extinction rates with dynamics describedby a logistic function In discrete time this function can follow the standard linearization such thatyti = ai + biNti where yti = log(Nit+1Nit) [45]

In order to calculate the return rate we estimated habitat occupancy as the proportion of replicatequadrats that were occupied by seagrass each year t at each of the five survey sites (i = 1 5) Inits linearized form the metapopulation model can be fitted to spatially replicated seagrass data usinga generalized additive model (GAM) framework regressing y on N with ai represented by sitewisey-axis intercepts and density dependence described using smoothing splines at the individual site level

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[46] The GAM fitting process implements a generalized cross-validation algorithm to assess the optimaldegree of nonlinearity Additionally we captured differences in within-site temporal variance as well asbetween-site correlation by incorporating a full variancendashcovariance matrix estimated directly from thedata (see [47] for full details of the method) The regressed value bi is then taken as the estimate for thereturn rate at site i [1748]

All analysis was performed using R v 312 (R Core Team 2014) with additional functions from thepackages ggmap ggplot2 and mgcv

4 ResultsThe spatial-dynamic persistence relationship was compared when either the environmental parametersor the demographic parameters were varied These relationships were then compared with theseagrass ecosystem where the dynamic persistence was measured from the annual longitudinalstudy and the spatial patchiness was measured from the aerial photographic survey described in themethods

41 SimulationsIn the initial investigation the dynamic and spatial parameters of the model were fixed and theenvironmental parameters were varied The Korcak exponent correlates strongly with the return ratethere is also a high likelihood for each fitted power-law distribution indicating a good fit of the exponent(figure 2ab) The gradient of the relationship was also found to vary depending on whether highcompetition or low competition was present

The environmental noise and gradient terms both have a large impact on the resulting return rate andKorcak exponent of the system (figure 3ab) A higher environmental gradient leads to a higher returnrate with a decreased spatial patchiness (lower Korcak exponent) This effect is also more pronouncedwhen the environmental noise term increases The return rate and spatial patchiness is at its greatestvalue where both the environmental gradient and noise are also at their greatest value

In the second simulation experiment the environmental parameters were fixed and the dynamic andspatial parameters were allowed to vary The resulting Korcak exponent (figure 4) gives no relationshipto the return rate Although the spatial scaling does vary (between 28 and 37) there is no clear emergentrelationship and a linear regression analysis finds no significant trend (p gt 005)

The simulation analysis therefore indicates that a negative-linear relationship is found when sites arenear equilibrium and when only environmental variables vary between sites

42 Seagrass data analysisDensity dependence analysis was undertaken to quantify the return rate of seagrass metapopulations inequilibrium at each survey site Here return rate is the negative of the gradient of the density-dependentresponse around equilibrium [48] Initially the fitted variancendashcovariance matrix was assessed Inclusionof empirical between-site spatial correlations did improve model fit (Likelihood ratio = 344 df = 10p lt 0001) Generalized cross validation showed that a linear functional form rather than smoothingsplines was the best fit at all sites except Old Grimsby Harbour making direct estimation of return ratesstraightforward in all but that case (figure 5) Return rates are shown in table 2 At three survey sitesBroad Ledges Tresco (blt) Higher Town Bay (htb) and West Broad Ledges (wbl) the null hypothesisof random walk dynamics was rejected in favour of density-dependent population regulation [13]However at Little Arthur (la) and Old Grimsby Harbour (ogh) statistically significant return rates couldnot be estimated (figure 5)

Seagrass persisted at all five survey sites throughout the length of the study (figure 5) There wasno evidence of temporal autocorrelation in the time series (Likelihood ratio = 082 p = 037) The onlysite to show a significant linear trend (decline) was Old Grimsby Harbour (t = 396 p lt 0001) We foundthe expected inverse relationship between the power-law exponent of the patch size distribution (theKorcak exponent) and the dynamic return rate for survey sites that were confirmed as having stationarytemporal dynamics (figure 6) However two sites were excluded as they failed to meet this assumptionOld Grimsby Harbour is evidently in sharp decline (figure 5) and Little Arthur while maintaining highpatch occupancy throughout the survey period could not be confirmed as being stationary (figure 5 andtable 2)

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

7

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0 01 0210

15

20

25

30

35

return rate

Kor

cak

expo

nent

10

ndash50

ndash100

ndash150

ndash20015

20

25

30

35

Kor

cak

expo

nent

0 01 02return rate

log-

likel

ihoo

d

(a) (b)

Figure 2 Relationship between return rate and Korcak dimension for high and low competition where environmental parameterswere varied Other parameters were kept constant at σ1 = 05 σ2 = 1 and μ = 02 The log-likelihood indicates goodness of fit tothe spatial data where higher values indicate a better fit (a) Korcak dimension (low k) and (b) Korcak dimension (high k)

100018 32

302826242220181614

016014012010008006004002

075

x

g

050

025

100

retu

rn r

ate

Kor

cak

expo

nent

075050025

100

075

x

g

050

025

100075050025

(b)(a)

Figure 3 Resulting values of (a) return rate and (b) Korcak exponent for environmental noise (ξ ) and environmental gradient (γ )where competition (k) is low Both environmental noise and gradient have a large impact on both the static and dynamic properties ofthe system A sharper gradient increases the return rate and this effect is more pronounced for higher environmental noise The gradientterm also decreases the patchiness of the vegetation distribution (lower exponent) and this effect again increases for higher valuesof noise

002 004 006 008 01027

28

29

30

31

32

33

34

35

36

37

Kor

cak

expo

nent

return rate

log-

likel

ihoo

d

minus250

minus200

minus150

minus100

minus50

Figure 4 Varying the dynamic parameters k and μ for fixed spatial and environment parameters σ1 = 05 σ2 = 1 γ = 05 andξ = 01 There is a lack of strong correlation between the Korcak dimension and the return rate

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

8

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blt htb wbl la ogh

05

2000 2000 2000 2000 20002010 2010 2010 2010 2010year year year year year

dens

ity o

ccup

ied

quad

rats

log

(Nt+

1N

t)de

nsity

0

06

04

02

0

ndash02

ndash04

10

ndash0604 05 06 07

Nt

08 09 10 04 05 06 07Nt

08 09 10 04 05 06 07Nt

08 09 10 04 05 06 07Nt

08 09 10 04 05 06 07Nt

08 09 10

105

10ndash3

10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10

10

Figure 5 Time-series and patch-size data from five survey sites around the Isles of Scilly UK (blt Broad Ledges Tresco htb Higher TownBay wbl West Broad Ledges la Little Arthur ogh Old Grimsby Harbour) The three sites used in the study are on the left with the twoexcluded on the right Top row Data points represent proportions of occupied 25 times 25 cm quadrats for the years 1996ndash2014Middle rowTransformed data comparing density at year t to log(Nt+1Nt) Regression line for return rate shown in black with 95 confidence limitshown as a red dashed line Bottom row Patch-size distribution for five sites with normalized frequency A solid line with a scaling of 2has been added for clarity

Table 2 Estimated return rates and Korcak exponent for the five seagrass survey sites Also given are the standard error (se) of thereturn rate fit along with the t-value and corresponding p-value and the 95 CIs for the Korcak exponent estimated through bootstrapre-sampling

site return rate se t-value (df= 50) p-value Korcak exponent 95 CI

blt 0857 0307 279 0007 1775 (1773 1776)

htb 0718 0296 233 0023 1869 (1866 1869)

la 0943 0618 152 0134 1761 (1758 1762)

ogh na na na na 1811 (1806 1813)

wbl 0930 0294 304 0004 1740 (1735 1740)

5 DiscussionThere has recently been increasing interest in finding generic spatial indicators of ecosystem pressureor collapse [2249] however until now there has been little validation of these spatial indicatorsagainst long-term population data We have demonstrated for a particular ecosystem under whatcircumstances there should be a connection between the dynamic persistence defined using the returnrate to population equilibrium and the spatial persistence defined using the Korcak exponent Thesimulations derived from a model of a spatial dynamic vegetation system in the presence of demographiccompetition and an environmental gradient demonstrated that a strong relationship exists only whenenvironmental parameters vary between sites This relationship was then compared with a long-termseagrass study where a similar relationship was found for the sites where the return rate couldbe measured

We have found that a relationship between the Korcak exponent and the return rate only exists whencertain factors are present Numerical simulation indicates a strong relationship between the Korcakexponent and the rate of return to equilibrium when only properties of the environment are altered Thisrelationship was supported to a limited extent by data obtained from the long-term study of seagrass To

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9

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return rate05 06 07 08 09 10 11 12 13

Kor

cak

expo

nent

15

16

17

18

19

20

21

BLT

HTB

LA

WBL

95 CI85 CI

Figure 6 Korcak return rate relationship for surveyed vegetation Empirical seagrass data for three sites surveyed is shown as labelledpoints withplusmnse error bars for both return rate and Korcak exponent where the Korcak exponent errors were found through bootstrapre-sampling [50] Although Little Arthur (LA) did not have a statistically significant return rate this has been plotted here for clarityThe diagonal solid band describes the inverse relationship reproduced by the PCA model over a range of environmental parameters Theoverall simulation rate is set using known parameters of death and recruitment for Zostera marina [51] The other simulation parameterswere set arbitrarily and hence show a qualitative as opposed to quantitative similarity with the data

our knowledge this is the first time a direct comparison has been possible between time-series and spatialsnapshot data on the same natural system The strategy of coupling rigorous modelling developmentwith high-quality long-term field study is a powerful approach for making generalizable inferencebased on biologically well-supported assumptions and observation In particular analysis of where thepredicted relationship breaks down in nature where the demographic parameters between locations aresignificantly different provides useful motivation and insight for further theoretical exploration

Using a PCA model we predict a strong negative linear relationship between the Korcak exponentand the return rate over a wide range of parametersmdashin fact all parameters that generate return ratesabove 005 (figure 2) This reversal of the relationship can be observed when there is no environmentalgradient present (figure 3) While variation in environmental parameters gave a strong Korcakndashreturnrate relationship this was not duplicated when the dynamic (species-specific) parameters were varied(figure 4) Instead a very low correlation relationship was found These results highlight the practicalusefulness and potential shortcomings of this method for discerning the return rate and hence persistenceof a species from its spatial pattern The change in gradient due to high- and low-competition (k) valuesalso gives an indication of how comparisons of the Korcak exponent should be implemented (figure 2) Ifendogenous parameters (k σ1 σ2 μ) are fixed then a monotonic relationship is produced with a gradientthat is dependent on those endogenous parameters This suggests that while in some settings the Korcakexponent does correlate with the return rate of the system and thus its persistence this is not true ingeneral Other studies have recently highlighted similar results that generic indicators of a catastrophicshift may not hold generally across all settings [192352]

Our results indicate a Korcakndashpersistence relationship in a long-term study with an aerialphotographic survey Vegetation density data in the form of a 20-year quadrat survey from the Isles ofScilly UK was used to estimate the return rate for five distinct lsquomeadowsrsquo This was compared withthe Korcak exponent measured from the patch-size distribution obtained via an aerial photographicsurvey conducted towards the end of the study The same negatively correlated Korcakndashpersistencerelationship was found from this data and has qualitative agreement with the simulation study subjectto the limitations of assuming equilibrium dynamics already noted The model is simplistic in natureand may not fully capture the variety of complex interactions occurring in a vegetation system indeeddiffering model assumptions can lead to different conclusions based on spatial indicators [1952] Thecomparison between the data and model then is given to illustrate the general form of the relationshipA model with more realistic assumptions and fitted parameters may better reproduce the observedrelationship therefore This gives a tantalizing glimpse of how high-resolution remote-sensing techniquescould support some more traditional ecological survey techniques when answering questions about thedynamical persistence of an ecosystem As has recently been pointed out these spatial techniques would

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10

rsosroyalsocietypublishingorgRSocopensci3150519

be system-dependent and further validation against empirical data is required before drawing robustconclusions from spatial snapshots alone [52]

In the event only three out of five sites assessed showed the predicted relationship between spatialand temporal statistics In both cases where the relationship between spatial and temporal dynamicsfell down it was due to being unable to reliably estimate a return rate from time-series analysis Atone site (Little Arthur) coverage by vegetation was very high for most of the time surveyed Althoughpopulation growth rate and density was reasonably described by a linear relationship (figure 5) thispresented too little information about response to perturbation to derive a statistically significant returnrate The other site not following the predicted relationship was Old Grimsby Harbour which is heavilydisturbed by boat traffic and can be seen to be declining precipitously (figure 5) These cases point tolimitations of classic time-series analysis It would require further validation of the Korcak exponentapproach to confidently use alongside time-series analysis

Sugihara [32] proposed that dynamics could be inferred from complexity of shape They illustratedthis point by using a fractional Brownian motion model where the Hurst exponent could be used todetect the persistence of the generating process Other studies [53] have used this relationship to explorehow measures of persistence can relate to dynamics however there has been no strong quantitative testof whether the spatial persistence of a landscape relates to the temporal persistence Here we have testedthe generality of this hypothesis by precisely defining dynamic persistence and then relating this to theshape of the resulting distribution Overall care must be taken when directly comparing spatial statisticsto temporal ones This general conclusion has also been recently highlighted in the context of comparingtruncations in the patch-size distribution to the proximity to a dynamic threshold [2223] Universalityof fractal growth processes leads to many spatial patterns that are similar in the sense that they sharethe same scaling relationship [54] For a fractal measure to be applied in the context of estimating areturn rate we believe that a strong mechanistic understanding of the underlying growth mechanismsis required which has similarly been found in a study of marine diatoms [24] We have focused onmechanisms where growth is locally positively correlated with surrounding vegetation and negativelycorrelated on larger scales However there may also be other spatially correlated processes in a vegetativesystem that lead to changes in the scaling properties of the system such as grazing [222355] or disease[56] It would be interesting to discern the Korcakndashpersistence relationship where such other factorsare present

Data accessibility The Isles of Scilly dataset including the patch sizes and occupancy for the five meadow sites can befound at httpdxdoiorg105061dryadr95s8Authorsrsquo contributions MAI MJK and JCB conceived the study MAI undertook the modelling with support fromMJK and JCB ELJ EJK KJC and JCB undertook the experimental work MAI MJK and JCB wrote themanuscript with suggestions and comments from all authorsCompeting interests The authors declare they have no competing interestsFunding The research in this article was in part funded by The University of Warwickrsquos EPSRC-funded DoctoralTraining Centre for Complexity Science

References1 Moffat AS 1994 Theoretical ecology winning its

spurs in the real world Science 263 1090ndash1092(doi101126science8108725)

2 Bascompte J Soleacute RV 1995 Rethinking complexitymodelling spatio-temporal dynamics in ecologyTrends Ecol Evol 10 361ndash366 (doi101016S0169-5347(00)89134-X)

3 Rietkerk M Van de Koppel J 2008 Regular patternformation in real ecosystems Trends Ecol Evol 23169ndash175 (doi101016jtree200710013)

4 Pascual M Guichard F 2005 Criticality anddisturbance in spatial ecological systems TrendsEcol Evol 20 88ndash95 (doi101016jtree200411012)

5 McIntire EJ Fajardo A 2009 Beyond description theactive and effective way to infer processes fromspatial patterns Ecology 90 46ndash56 (doi10189007-20961)

6 Borcard D Legendre P Avois-Jacquet C Tuomisto H2004 Dissecting the spatial structure of ecologicaldata at multiple scales Ecology 85 1826ndash1832(doi10189003-3111)

7 Jeltsch F Moloney K Milton SJ 1999 Detectingprocess from snapshot pattern lessons from treespacing in the southern Kalahari Oikos 85451ndash466 (doi1023073546695)

8 Silvertown J Wilson JB 1994 Community structurein a desert perennial community Ecology 75409ndash417 (doi1023071939544)

9 Eppinga MB de Ruiter PC Wassen MJ Rietkerk M2009 Nutrients and hydrology indicate the drivingmechanisms of peatland surface patterningAm Nat 173 803ndash818 (doi101086598487)

10 Liu QX Weerman EJ Herman PM Olff H van deKoppel J 2012 Alternative mechanisms alter theemergent properties of self-organization in mussel

beds Proc R Soc B 279 2744ndash2753(doi101098rspb20120157)

11 Liu QX Doelman A Rottschaumlfer V de Jager MHerman PM Rietkerk M van de Koppela J 2013Phase separation explains a new class ofself-organized spatial patterns in ecologicalsystems Proc Natl Acad Sci USA 110 11 905ndash11 910(doi101073pnas1222339110)

12 Dieckmann U Law R 2000 Relaxation projectionsand the method of moments In The geometry ofecological interactions simplifying spatialcomplexity (eds U Dieckmann R Law JAJ Metz)pp 412ndash455 Cambridge UK Cambridge UniversityPress

13 Dennis B Taper ML 1994 Density dependence intime series observations of natural populationsestimation and testing Ecol Monogr 64 205ndash224(doi1023072937041)

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14 Ives A Dennis B Cottingham K Carpenter S 2003

Estimating community stability and ecologicalinteractions from time-series data Ecol Monogr 73301ndash330 (doi1018900012-9615(2003)073[0301ECSAEI]20CO2)

15 Berryman A Turchin P 2001 Identifying thedensity-dependent structure underlying ecologicaltime series Oikos 92 265ndash270 (doi101034j1600-07062001920208x)

16 Holling CS 1996 Engineering resilience versusecological resilience In Engineering withinecological constraints (ed P Schulze) pp 31ndash44Washington DC National Academy

17 Sibly RM Barker D DenhamMC Hone J Pagel M2005 On the regulation of populations of mammalsbirds fish and insects Science 309 607ndash610(doi101126science1110760)

18 Legendre P Fortin MJ 1989 Spatial pattern andecological analysis Vegetatio 80 107ndash138(doi101007BF00048036)

19 Dakos V Keacutefi S Rietkerk M Van Nes EH Scheffer M2011 Slowing down in spatially patternedecosystems at the brink of collapse Am Nat 177E153ndashE166 (doi101086659945)

20 Mandelbrot BB 1983 The fractal geometry of natureNew York NY Macmillan

21 Scanlon TM Caylor KK Levin SA Rodriguez-Iturbe I2007 Positive feedbacks promote power-lawclustering of Kalahari vegetation Nature 449209ndash212 (doi101038nature06060)

22 Keacutefi S Rietkerk M Alados CL Pueyo Y PapanastasisVP ElAich A de Ruiter PC 2007 Spatial vegetationpatterns and imminent desertification inMediterranean arid ecosystems Nature 449213ndash217 (doi101038nature06111)

23 Maestre FT Escudero A 2009 Is the patch sizedistribution of vegetation a suitable indicator ofdesertification processes Ecology 90 1729ndash1735(doi10189008-20961)

24 Weerman E Van Belzen J Rietkerk M TemmermanS Keacutefi S Herman P Van de Koppel J 2012 Changesin diatom patch-size distribution and degradationin a spatially self-organized intertidal mudflatecosystem Ecology 93 608ndash618(doi10189011-06251)

25 Hastings HM Sugihara G 1993 Fractals a userrsquosguide for the natural sciences Oxford UK OxfordUniversity Press

26 Pascual M Roy M Guichard F Flierl G 2002 Clustersize distributions signatures of selfndashorganization inspatial ecologies Phil Trans R Soc Lond B 357657ndash666 (doi101098rstb20010983)

27 Vicsek T Family F 1984 Dynamic scaling foraggregation of clusters Phys Rev Lett 52 1669(doi101103PhysRevLett521669)

28 Irvine M Bull J Keeling M 2015 Aggregationdynamics explain vegetation patch-size

distributions Theor Popul Biol 108 70ndash74(doi101016jtpb201512001)

29 Xin Xp Gao Q Li Yy Yang Z 1999 Fractal analysis ofgrass patches under grazing and flood disturbancein an Alkaline grassland [J] Acta Bot Sin 41307ndash313

30 Imre AR Cseh D Neteler M Rocchini D 2011 Korcakdimension as a novel indicator of landscapefragmentation and re-forestation Ecol Indicators11 1134ndash1138 (doi101016jecolind201012013)

31 Erlandsson J McQuaid CD Skoumlld M 2011 Patchinessand co-existence of indigenous and invasivemussels at small spatial scales the interactionof facilitation and competition PLoS ONE 6e26958 (doi101371journalpone0026958)

32 Sugihara G May R 1990 Applications of fractals inecology Trends Ecol Evol 5 79ndash86(doi1010160169-5347(90)90235-6)

33 Imre AR Novotny J Rocchini D 2012 TheKorcak-exponent a non-fractal descriptor forlandscape patchiness Ecol Complexity 12 70ndash74(doi101016jecocom201210001)

34 Bull JC Kenyon EJ Cook KJ 2012 Wasting diseaseregulates long-term population dynamics in athreatened seagrass Oecologia 169 135ndash142(doi101007s00442-011-2187-6)

35 Jackson EL Higgs S Allsop T Cathray A Evans JLangmead O 2011 Isles of Scilly seagrass mappingNatural England NECR087

36 Orth RJ Moore KA 1988 Distribution of Zosteramarina L and Ruppia maritima L sensu lato alongdepth gradients in the lower Chesapeake Bay USAAquat Bot 32 291ndash305 (doi1010160304-3770(88)90122-2)

37 Krause-Jensen D Pedersen MF Jensen C 2003Regulation of eelgrass (Zostera marina) cover alongdepth gradients in Danish coastal waters Estuaries26 866ndash877 (doi101007BF02803345)

38 Balzter H Braun PW Koumlhler W 1998 Cellularautomata models for vegetation dynamics EcolModel 107 113ndash125 (doi101016S0304-3800(97)00202-0)

39 Hogeweg P 1988 Cellular automata as aparadigm for ecological modeling Appl MathComput27 81ndash100 (doi1010160096-3003(88)90100-2)

40 Lefever R Lejeune O 1997 On the origin of tigerbush Bull Math Biol 59 263ndash294 (doi101007BF02462004)

41 Clauset A Shalizi CR Newman ME 2009 Power-lawdistributions in empirical data SIAM Rev 51661ndash703 (doi101137070710111)

42 Lobelle D Kenyon EJ Cook KJ Bull JC 2013 Localcompetition and metapopulation processes drive

long-term seagrass-epiphyte population dynamicsPLoS ONE 8 e57072 (doi101371journalpone0057072)

43 Potouroglou M Kenyon EJ Gall A Cook KJ Bull JC2014 The roles of flowering overwinter survival andsea surface temperature in the long-termpopulation dynamics of Zostera marina around theIsles of Scilly UKMar Pollut Bull 83 500ndash507(doi101016jmarpolbul201403035)

44 Levins R 1969 Some demographic and geneticconsequences of environmental heterogeneity forbiological control Bull Entomol Soc Am 15237ndash240 (doi101093besa153237)

45 Royama T 1992 Analytical population dynamicsvol 10 Berlin Germany Springer Science ampBusiness Media

46 Bjoslashrnstad ON Begon M Stenseth NC Falck W SaitSM Thompson DJ 1998 Population dynamics of theIndian meal moth demographic stochasticity anddelayed regulatory mechanisms J Anim Ecol 67110ndash126 (doi101046j1365-2656199800168x)

47 Wood S 2006 Generalized additive models anintroduction with R Boca Raton FL CRC Press

48 Sibly RM Barker D Hone J Pagel M 2007 On thestability of populations of mammals birds fish andinsects Ecol Lett 10 970ndash976(doi101111j1461-0248200701092x)

49 Keacutefi S Rietkerk M Roy M Franc A De Ruiter PCPascual M 2011 Robust scaling in ecosystems andthe meltdown of patch size distributions beforeextinction Ecol Lett 14 29ndash35 (doi101111j1461-0248201001553x)

50 Efron B 1981 Nonparametric estimates of standarderror the jackknife the bootstrap and othermethods Biometrika 68 589ndash599(doi101093biomet683589)

51 Larkum AW Orth RJ Duarte C 2006 Seagrassesbiology ecology and conservation Berlin GermanySpringer

52 Keacutefi S et al 2014 Early warning signals of ecologicaltransitions methods for spatial patterns PLoS ONE9 e92097 (doi101371journalpone0092097)

53 Cunha A Santos R Gaspar A Bairros M 2005Seagrass landscape-scale changes in response todisturbance created by the dynamics ofbarrier-islands a case study from Ria Formosa(Southern Portugal) Estuar Coast Shelf Sci 64636ndash644 (doi101016jecss200503018)

54 Bunde A Havlin S 1991 Fractals and disorderedsystems New York NY Springer

55 Adler P Raff D Lauenroth W 2001 The effect ofgrazing on the spatial heterogeneity of vegetationOecologia 128 465ndash479 (doi101007s004420100737)

56 Packer A Clay K 2000 Soil pathogens and spatialpatterns of seedling mortality in a temperate treeNature 404 278ndash281 (doi10103835005072)

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

  • Introduction
  • Lattice-based simulation with environmental gradient
    • Model development
    • Model analysis
      • Field survey and aerial photography of seagrass meadows
        • Seagrass meadow locations
        • Survey protocol
        • Statistical modelling
          • Results
            • Simulations
            • Seagrass data analysis
              • Discussion
              • References
Page 6: Fractal measures of spatial pattern as a heuristic for ...sro.sussex.ac.uk/id/eprint/60356/1/150519.full.pdf · fractal measures and persistence exists. We combine theoretical arguments

5

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0lt15 m depth

seagrassMHWS

5 m05 1 2 3 4

km

N

W E

S

Figure 1 The five surveyed sites in The Isles of Scilly UK blt Broad Ledges Tresco la Little Arthur htb Higher Town Bay ogh OldGrimsby Harbour wbl West Broad Ledges Both time-series data in the form of annual surveys and spatial data in the form of a singleaerial survey were conducted (adapted from [35])

Table 1 GPS positions and depths relative to chart datum for the five seagrass survey sites (lsquo+05rsquo indicates this site is exposed at lowwater all other sites are fully sub-tidal)

site latitude and longitude depth (m)

Broad Ledges Tresco 49564prime N 06196prime W 02

Higher Town Bay 49572prime N 06166prime W +05

Little Arthur 49569prime N 06159prime W 10

Old Grimsby Harbour 49576prime N 06198prime W 06

West Broad Ledges 49575prime N 06184prime W 06

predetermined as random rectangular coordinates (x y) translated into polar coordinates (distancebearing) radiating from a chosen focal point Randomization of quadrat locations was renewed eachyear and the maximum distance was 30 m from the focal point close to the centre of each meadow

33 Statistical modellingWe developed a metapopulation dynamic model of seagrass habitat occupancy based on the classicLevins model [44] Suitable habitat is defined as either occupied or vacant The proportion of habitatpatches for meadow i Ni is dependent on colonization and extinction rates with dynamics describedby a logistic function In discrete time this function can follow the standard linearization such thatyti = ai + biNti where yti = log(Nit+1Nit) [45]

In order to calculate the return rate we estimated habitat occupancy as the proportion of replicatequadrats that were occupied by seagrass each year t at each of the five survey sites (i = 1 5) Inits linearized form the metapopulation model can be fitted to spatially replicated seagrass data usinga generalized additive model (GAM) framework regressing y on N with ai represented by sitewisey-axis intercepts and density dependence described using smoothing splines at the individual site level

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6

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[46] The GAM fitting process implements a generalized cross-validation algorithm to assess the optimaldegree of nonlinearity Additionally we captured differences in within-site temporal variance as well asbetween-site correlation by incorporating a full variancendashcovariance matrix estimated directly from thedata (see [47] for full details of the method) The regressed value bi is then taken as the estimate for thereturn rate at site i [1748]

All analysis was performed using R v 312 (R Core Team 2014) with additional functions from thepackages ggmap ggplot2 and mgcv

4 ResultsThe spatial-dynamic persistence relationship was compared when either the environmental parametersor the demographic parameters were varied These relationships were then compared with theseagrass ecosystem where the dynamic persistence was measured from the annual longitudinalstudy and the spatial patchiness was measured from the aerial photographic survey described in themethods

41 SimulationsIn the initial investigation the dynamic and spatial parameters of the model were fixed and theenvironmental parameters were varied The Korcak exponent correlates strongly with the return ratethere is also a high likelihood for each fitted power-law distribution indicating a good fit of the exponent(figure 2ab) The gradient of the relationship was also found to vary depending on whether highcompetition or low competition was present

The environmental noise and gradient terms both have a large impact on the resulting return rate andKorcak exponent of the system (figure 3ab) A higher environmental gradient leads to a higher returnrate with a decreased spatial patchiness (lower Korcak exponent) This effect is also more pronouncedwhen the environmental noise term increases The return rate and spatial patchiness is at its greatestvalue where both the environmental gradient and noise are also at their greatest value

In the second simulation experiment the environmental parameters were fixed and the dynamic andspatial parameters were allowed to vary The resulting Korcak exponent (figure 4) gives no relationshipto the return rate Although the spatial scaling does vary (between 28 and 37) there is no clear emergentrelationship and a linear regression analysis finds no significant trend (p gt 005)

The simulation analysis therefore indicates that a negative-linear relationship is found when sites arenear equilibrium and when only environmental variables vary between sites

42 Seagrass data analysisDensity dependence analysis was undertaken to quantify the return rate of seagrass metapopulations inequilibrium at each survey site Here return rate is the negative of the gradient of the density-dependentresponse around equilibrium [48] Initially the fitted variancendashcovariance matrix was assessed Inclusionof empirical between-site spatial correlations did improve model fit (Likelihood ratio = 344 df = 10p lt 0001) Generalized cross validation showed that a linear functional form rather than smoothingsplines was the best fit at all sites except Old Grimsby Harbour making direct estimation of return ratesstraightforward in all but that case (figure 5) Return rates are shown in table 2 At three survey sitesBroad Ledges Tresco (blt) Higher Town Bay (htb) and West Broad Ledges (wbl) the null hypothesisof random walk dynamics was rejected in favour of density-dependent population regulation [13]However at Little Arthur (la) and Old Grimsby Harbour (ogh) statistically significant return rates couldnot be estimated (figure 5)

Seagrass persisted at all five survey sites throughout the length of the study (figure 5) There wasno evidence of temporal autocorrelation in the time series (Likelihood ratio = 082 p = 037) The onlysite to show a significant linear trend (decline) was Old Grimsby Harbour (t = 396 p lt 0001) We foundthe expected inverse relationship between the power-law exponent of the patch size distribution (theKorcak exponent) and the dynamic return rate for survey sites that were confirmed as having stationarytemporal dynamics (figure 6) However two sites were excluded as they failed to meet this assumptionOld Grimsby Harbour is evidently in sharp decline (figure 5) and Little Arthur while maintaining highpatch occupancy throughout the survey period could not be confirmed as being stationary (figure 5 andtable 2)

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

7

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0 01 0210

15

20

25

30

35

return rate

Kor

cak

expo

nent

10

ndash50

ndash100

ndash150

ndash20015

20

25

30

35

Kor

cak

expo

nent

0 01 02return rate

log-

likel

ihoo

d

(a) (b)

Figure 2 Relationship between return rate and Korcak dimension for high and low competition where environmental parameterswere varied Other parameters were kept constant at σ1 = 05 σ2 = 1 and μ = 02 The log-likelihood indicates goodness of fit tothe spatial data where higher values indicate a better fit (a) Korcak dimension (low k) and (b) Korcak dimension (high k)

100018 32

302826242220181614

016014012010008006004002

075

x

g

050

025

100

retu

rn r

ate

Kor

cak

expo

nent

075050025

100

075

x

g

050

025

100075050025

(b)(a)

Figure 3 Resulting values of (a) return rate and (b) Korcak exponent for environmental noise (ξ ) and environmental gradient (γ )where competition (k) is low Both environmental noise and gradient have a large impact on both the static and dynamic properties ofthe system A sharper gradient increases the return rate and this effect is more pronounced for higher environmental noise The gradientterm also decreases the patchiness of the vegetation distribution (lower exponent) and this effect again increases for higher valuesof noise

002 004 006 008 01027

28

29

30

31

32

33

34

35

36

37

Kor

cak

expo

nent

return rate

log-

likel

ihoo

d

minus250

minus200

minus150

minus100

minus50

Figure 4 Varying the dynamic parameters k and μ for fixed spatial and environment parameters σ1 = 05 σ2 = 1 γ = 05 andξ = 01 There is a lack of strong correlation between the Korcak dimension and the return rate

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

8

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blt htb wbl la ogh

05

2000 2000 2000 2000 20002010 2010 2010 2010 2010year year year year year

dens

ity o

ccup

ied

quad

rats

log

(Nt+

1N

t)de

nsity

0

06

04

02

0

ndash02

ndash04

10

ndash0604 05 06 07

Nt

08 09 10 04 05 06 07Nt

08 09 10 04 05 06 07Nt

08 09 10 04 05 06 07Nt

08 09 10 04 05 06 07Nt

08 09 10

105

10ndash3

10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10

10

Figure 5 Time-series and patch-size data from five survey sites around the Isles of Scilly UK (blt Broad Ledges Tresco htb Higher TownBay wbl West Broad Ledges la Little Arthur ogh Old Grimsby Harbour) The three sites used in the study are on the left with the twoexcluded on the right Top row Data points represent proportions of occupied 25 times 25 cm quadrats for the years 1996ndash2014Middle rowTransformed data comparing density at year t to log(Nt+1Nt) Regression line for return rate shown in black with 95 confidence limitshown as a red dashed line Bottom row Patch-size distribution for five sites with normalized frequency A solid line with a scaling of 2has been added for clarity

Table 2 Estimated return rates and Korcak exponent for the five seagrass survey sites Also given are the standard error (se) of thereturn rate fit along with the t-value and corresponding p-value and the 95 CIs for the Korcak exponent estimated through bootstrapre-sampling

site return rate se t-value (df= 50) p-value Korcak exponent 95 CI

blt 0857 0307 279 0007 1775 (1773 1776)

htb 0718 0296 233 0023 1869 (1866 1869)

la 0943 0618 152 0134 1761 (1758 1762)

ogh na na na na 1811 (1806 1813)

wbl 0930 0294 304 0004 1740 (1735 1740)

5 DiscussionThere has recently been increasing interest in finding generic spatial indicators of ecosystem pressureor collapse [2249] however until now there has been little validation of these spatial indicatorsagainst long-term population data We have demonstrated for a particular ecosystem under whatcircumstances there should be a connection between the dynamic persistence defined using the returnrate to population equilibrium and the spatial persistence defined using the Korcak exponent Thesimulations derived from a model of a spatial dynamic vegetation system in the presence of demographiccompetition and an environmental gradient demonstrated that a strong relationship exists only whenenvironmental parameters vary between sites This relationship was then compared with a long-termseagrass study where a similar relationship was found for the sites where the return rate couldbe measured

We have found that a relationship between the Korcak exponent and the return rate only exists whencertain factors are present Numerical simulation indicates a strong relationship between the Korcakexponent and the rate of return to equilibrium when only properties of the environment are altered Thisrelationship was supported to a limited extent by data obtained from the long-term study of seagrass To

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

9

rsosroyalsocietypublishingorgRSocopensci3150519

return rate05 06 07 08 09 10 11 12 13

Kor

cak

expo

nent

15

16

17

18

19

20

21

BLT

HTB

LA

WBL

95 CI85 CI

Figure 6 Korcak return rate relationship for surveyed vegetation Empirical seagrass data for three sites surveyed is shown as labelledpoints withplusmnse error bars for both return rate and Korcak exponent where the Korcak exponent errors were found through bootstrapre-sampling [50] Although Little Arthur (LA) did not have a statistically significant return rate this has been plotted here for clarityThe diagonal solid band describes the inverse relationship reproduced by the PCA model over a range of environmental parameters Theoverall simulation rate is set using known parameters of death and recruitment for Zostera marina [51] The other simulation parameterswere set arbitrarily and hence show a qualitative as opposed to quantitative similarity with the data

our knowledge this is the first time a direct comparison has been possible between time-series and spatialsnapshot data on the same natural system The strategy of coupling rigorous modelling developmentwith high-quality long-term field study is a powerful approach for making generalizable inferencebased on biologically well-supported assumptions and observation In particular analysis of where thepredicted relationship breaks down in nature where the demographic parameters between locations aresignificantly different provides useful motivation and insight for further theoretical exploration

Using a PCA model we predict a strong negative linear relationship between the Korcak exponentand the return rate over a wide range of parametersmdashin fact all parameters that generate return ratesabove 005 (figure 2) This reversal of the relationship can be observed when there is no environmentalgradient present (figure 3) While variation in environmental parameters gave a strong Korcakndashreturnrate relationship this was not duplicated when the dynamic (species-specific) parameters were varied(figure 4) Instead a very low correlation relationship was found These results highlight the practicalusefulness and potential shortcomings of this method for discerning the return rate and hence persistenceof a species from its spatial pattern The change in gradient due to high- and low-competition (k) valuesalso gives an indication of how comparisons of the Korcak exponent should be implemented (figure 2) Ifendogenous parameters (k σ1 σ2 μ) are fixed then a monotonic relationship is produced with a gradientthat is dependent on those endogenous parameters This suggests that while in some settings the Korcakexponent does correlate with the return rate of the system and thus its persistence this is not true ingeneral Other studies have recently highlighted similar results that generic indicators of a catastrophicshift may not hold generally across all settings [192352]

Our results indicate a Korcakndashpersistence relationship in a long-term study with an aerialphotographic survey Vegetation density data in the form of a 20-year quadrat survey from the Isles ofScilly UK was used to estimate the return rate for five distinct lsquomeadowsrsquo This was compared withthe Korcak exponent measured from the patch-size distribution obtained via an aerial photographicsurvey conducted towards the end of the study The same negatively correlated Korcakndashpersistencerelationship was found from this data and has qualitative agreement with the simulation study subjectto the limitations of assuming equilibrium dynamics already noted The model is simplistic in natureand may not fully capture the variety of complex interactions occurring in a vegetation system indeeddiffering model assumptions can lead to different conclusions based on spatial indicators [1952] Thecomparison between the data and model then is given to illustrate the general form of the relationshipA model with more realistic assumptions and fitted parameters may better reproduce the observedrelationship therefore This gives a tantalizing glimpse of how high-resolution remote-sensing techniquescould support some more traditional ecological survey techniques when answering questions about thedynamical persistence of an ecosystem As has recently been pointed out these spatial techniques would

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

10

rsosroyalsocietypublishingorgRSocopensci3150519

be system-dependent and further validation against empirical data is required before drawing robustconclusions from spatial snapshots alone [52]

In the event only three out of five sites assessed showed the predicted relationship between spatialand temporal statistics In both cases where the relationship between spatial and temporal dynamicsfell down it was due to being unable to reliably estimate a return rate from time-series analysis Atone site (Little Arthur) coverage by vegetation was very high for most of the time surveyed Althoughpopulation growth rate and density was reasonably described by a linear relationship (figure 5) thispresented too little information about response to perturbation to derive a statistically significant returnrate The other site not following the predicted relationship was Old Grimsby Harbour which is heavilydisturbed by boat traffic and can be seen to be declining precipitously (figure 5) These cases point tolimitations of classic time-series analysis It would require further validation of the Korcak exponentapproach to confidently use alongside time-series analysis

Sugihara [32] proposed that dynamics could be inferred from complexity of shape They illustratedthis point by using a fractional Brownian motion model where the Hurst exponent could be used todetect the persistence of the generating process Other studies [53] have used this relationship to explorehow measures of persistence can relate to dynamics however there has been no strong quantitative testof whether the spatial persistence of a landscape relates to the temporal persistence Here we have testedthe generality of this hypothesis by precisely defining dynamic persistence and then relating this to theshape of the resulting distribution Overall care must be taken when directly comparing spatial statisticsto temporal ones This general conclusion has also been recently highlighted in the context of comparingtruncations in the patch-size distribution to the proximity to a dynamic threshold [2223] Universalityof fractal growth processes leads to many spatial patterns that are similar in the sense that they sharethe same scaling relationship [54] For a fractal measure to be applied in the context of estimating areturn rate we believe that a strong mechanistic understanding of the underlying growth mechanismsis required which has similarly been found in a study of marine diatoms [24] We have focused onmechanisms where growth is locally positively correlated with surrounding vegetation and negativelycorrelated on larger scales However there may also be other spatially correlated processes in a vegetativesystem that lead to changes in the scaling properties of the system such as grazing [222355] or disease[56] It would be interesting to discern the Korcakndashpersistence relationship where such other factorsare present

Data accessibility The Isles of Scilly dataset including the patch sizes and occupancy for the five meadow sites can befound at httpdxdoiorg105061dryadr95s8Authorsrsquo contributions MAI MJK and JCB conceived the study MAI undertook the modelling with support fromMJK and JCB ELJ EJK KJC and JCB undertook the experimental work MAI MJK and JCB wrote themanuscript with suggestions and comments from all authorsCompeting interests The authors declare they have no competing interestsFunding The research in this article was in part funded by The University of Warwickrsquos EPSRC-funded DoctoralTraining Centre for Complexity Science

References1 Moffat AS 1994 Theoretical ecology winning its

spurs in the real world Science 263 1090ndash1092(doi101126science8108725)

2 Bascompte J Soleacute RV 1995 Rethinking complexitymodelling spatio-temporal dynamics in ecologyTrends Ecol Evol 10 361ndash366 (doi101016S0169-5347(00)89134-X)

3 Rietkerk M Van de Koppel J 2008 Regular patternformation in real ecosystems Trends Ecol Evol 23169ndash175 (doi101016jtree200710013)

4 Pascual M Guichard F 2005 Criticality anddisturbance in spatial ecological systems TrendsEcol Evol 20 88ndash95 (doi101016jtree200411012)

5 McIntire EJ Fajardo A 2009 Beyond description theactive and effective way to infer processes fromspatial patterns Ecology 90 46ndash56 (doi10189007-20961)

6 Borcard D Legendre P Avois-Jacquet C Tuomisto H2004 Dissecting the spatial structure of ecologicaldata at multiple scales Ecology 85 1826ndash1832(doi10189003-3111)

7 Jeltsch F Moloney K Milton SJ 1999 Detectingprocess from snapshot pattern lessons from treespacing in the southern Kalahari Oikos 85451ndash466 (doi1023073546695)

8 Silvertown J Wilson JB 1994 Community structurein a desert perennial community Ecology 75409ndash417 (doi1023071939544)

9 Eppinga MB de Ruiter PC Wassen MJ Rietkerk M2009 Nutrients and hydrology indicate the drivingmechanisms of peatland surface patterningAm Nat 173 803ndash818 (doi101086598487)

10 Liu QX Weerman EJ Herman PM Olff H van deKoppel J 2012 Alternative mechanisms alter theemergent properties of self-organization in mussel

beds Proc R Soc B 279 2744ndash2753(doi101098rspb20120157)

11 Liu QX Doelman A Rottschaumlfer V de Jager MHerman PM Rietkerk M van de Koppela J 2013Phase separation explains a new class ofself-organized spatial patterns in ecologicalsystems Proc Natl Acad Sci USA 110 11 905ndash11 910(doi101073pnas1222339110)

12 Dieckmann U Law R 2000 Relaxation projectionsand the method of moments In The geometry ofecological interactions simplifying spatialcomplexity (eds U Dieckmann R Law JAJ Metz)pp 412ndash455 Cambridge UK Cambridge UniversityPress

13 Dennis B Taper ML 1994 Density dependence intime series observations of natural populationsestimation and testing Ecol Monogr 64 205ndash224(doi1023072937041)

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

11

rsosroyalsocietypublishingorgRSocopensci3150519

14 Ives A Dennis B Cottingham K Carpenter S 2003

Estimating community stability and ecologicalinteractions from time-series data Ecol Monogr 73301ndash330 (doi1018900012-9615(2003)073[0301ECSAEI]20CO2)

15 Berryman A Turchin P 2001 Identifying thedensity-dependent structure underlying ecologicaltime series Oikos 92 265ndash270 (doi101034j1600-07062001920208x)

16 Holling CS 1996 Engineering resilience versusecological resilience In Engineering withinecological constraints (ed P Schulze) pp 31ndash44Washington DC National Academy

17 Sibly RM Barker D DenhamMC Hone J Pagel M2005 On the regulation of populations of mammalsbirds fish and insects Science 309 607ndash610(doi101126science1110760)

18 Legendre P Fortin MJ 1989 Spatial pattern andecological analysis Vegetatio 80 107ndash138(doi101007BF00048036)

19 Dakos V Keacutefi S Rietkerk M Van Nes EH Scheffer M2011 Slowing down in spatially patternedecosystems at the brink of collapse Am Nat 177E153ndashE166 (doi101086659945)

20 Mandelbrot BB 1983 The fractal geometry of natureNew York NY Macmillan

21 Scanlon TM Caylor KK Levin SA Rodriguez-Iturbe I2007 Positive feedbacks promote power-lawclustering of Kalahari vegetation Nature 449209ndash212 (doi101038nature06060)

22 Keacutefi S Rietkerk M Alados CL Pueyo Y PapanastasisVP ElAich A de Ruiter PC 2007 Spatial vegetationpatterns and imminent desertification inMediterranean arid ecosystems Nature 449213ndash217 (doi101038nature06111)

23 Maestre FT Escudero A 2009 Is the patch sizedistribution of vegetation a suitable indicator ofdesertification processes Ecology 90 1729ndash1735(doi10189008-20961)

24 Weerman E Van Belzen J Rietkerk M TemmermanS Keacutefi S Herman P Van de Koppel J 2012 Changesin diatom patch-size distribution and degradationin a spatially self-organized intertidal mudflatecosystem Ecology 93 608ndash618(doi10189011-06251)

25 Hastings HM Sugihara G 1993 Fractals a userrsquosguide for the natural sciences Oxford UK OxfordUniversity Press

26 Pascual M Roy M Guichard F Flierl G 2002 Clustersize distributions signatures of selfndashorganization inspatial ecologies Phil Trans R Soc Lond B 357657ndash666 (doi101098rstb20010983)

27 Vicsek T Family F 1984 Dynamic scaling foraggregation of clusters Phys Rev Lett 52 1669(doi101103PhysRevLett521669)

28 Irvine M Bull J Keeling M 2015 Aggregationdynamics explain vegetation patch-size

distributions Theor Popul Biol 108 70ndash74(doi101016jtpb201512001)

29 Xin Xp Gao Q Li Yy Yang Z 1999 Fractal analysis ofgrass patches under grazing and flood disturbancein an Alkaline grassland [J] Acta Bot Sin 41307ndash313

30 Imre AR Cseh D Neteler M Rocchini D 2011 Korcakdimension as a novel indicator of landscapefragmentation and re-forestation Ecol Indicators11 1134ndash1138 (doi101016jecolind201012013)

31 Erlandsson J McQuaid CD Skoumlld M 2011 Patchinessand co-existence of indigenous and invasivemussels at small spatial scales the interactionof facilitation and competition PLoS ONE 6e26958 (doi101371journalpone0026958)

32 Sugihara G May R 1990 Applications of fractals inecology Trends Ecol Evol 5 79ndash86(doi1010160169-5347(90)90235-6)

33 Imre AR Novotny J Rocchini D 2012 TheKorcak-exponent a non-fractal descriptor forlandscape patchiness Ecol Complexity 12 70ndash74(doi101016jecocom201210001)

34 Bull JC Kenyon EJ Cook KJ 2012 Wasting diseaseregulates long-term population dynamics in athreatened seagrass Oecologia 169 135ndash142(doi101007s00442-011-2187-6)

35 Jackson EL Higgs S Allsop T Cathray A Evans JLangmead O 2011 Isles of Scilly seagrass mappingNatural England NECR087

36 Orth RJ Moore KA 1988 Distribution of Zosteramarina L and Ruppia maritima L sensu lato alongdepth gradients in the lower Chesapeake Bay USAAquat Bot 32 291ndash305 (doi1010160304-3770(88)90122-2)

37 Krause-Jensen D Pedersen MF Jensen C 2003Regulation of eelgrass (Zostera marina) cover alongdepth gradients in Danish coastal waters Estuaries26 866ndash877 (doi101007BF02803345)

38 Balzter H Braun PW Koumlhler W 1998 Cellularautomata models for vegetation dynamics EcolModel 107 113ndash125 (doi101016S0304-3800(97)00202-0)

39 Hogeweg P 1988 Cellular automata as aparadigm for ecological modeling Appl MathComput27 81ndash100 (doi1010160096-3003(88)90100-2)

40 Lefever R Lejeune O 1997 On the origin of tigerbush Bull Math Biol 59 263ndash294 (doi101007BF02462004)

41 Clauset A Shalizi CR Newman ME 2009 Power-lawdistributions in empirical data SIAM Rev 51661ndash703 (doi101137070710111)

42 Lobelle D Kenyon EJ Cook KJ Bull JC 2013 Localcompetition and metapopulation processes drive

long-term seagrass-epiphyte population dynamicsPLoS ONE 8 e57072 (doi101371journalpone0057072)

43 Potouroglou M Kenyon EJ Gall A Cook KJ Bull JC2014 The roles of flowering overwinter survival andsea surface temperature in the long-termpopulation dynamics of Zostera marina around theIsles of Scilly UKMar Pollut Bull 83 500ndash507(doi101016jmarpolbul201403035)

44 Levins R 1969 Some demographic and geneticconsequences of environmental heterogeneity forbiological control Bull Entomol Soc Am 15237ndash240 (doi101093besa153237)

45 Royama T 1992 Analytical population dynamicsvol 10 Berlin Germany Springer Science ampBusiness Media

46 Bjoslashrnstad ON Begon M Stenseth NC Falck W SaitSM Thompson DJ 1998 Population dynamics of theIndian meal moth demographic stochasticity anddelayed regulatory mechanisms J Anim Ecol 67110ndash126 (doi101046j1365-2656199800168x)

47 Wood S 2006 Generalized additive models anintroduction with R Boca Raton FL CRC Press

48 Sibly RM Barker D Hone J Pagel M 2007 On thestability of populations of mammals birds fish andinsects Ecol Lett 10 970ndash976(doi101111j1461-0248200701092x)

49 Keacutefi S Rietkerk M Roy M Franc A De Ruiter PCPascual M 2011 Robust scaling in ecosystems andthe meltdown of patch size distributions beforeextinction Ecol Lett 14 29ndash35 (doi101111j1461-0248201001553x)

50 Efron B 1981 Nonparametric estimates of standarderror the jackknife the bootstrap and othermethods Biometrika 68 589ndash599(doi101093biomet683589)

51 Larkum AW Orth RJ Duarte C 2006 Seagrassesbiology ecology and conservation Berlin GermanySpringer

52 Keacutefi S et al 2014 Early warning signals of ecologicaltransitions methods for spatial patterns PLoS ONE9 e92097 (doi101371journalpone0092097)

53 Cunha A Santos R Gaspar A Bairros M 2005Seagrass landscape-scale changes in response todisturbance created by the dynamics ofbarrier-islands a case study from Ria Formosa(Southern Portugal) Estuar Coast Shelf Sci 64636ndash644 (doi101016jecss200503018)

54 Bunde A Havlin S 1991 Fractals and disorderedsystems New York NY Springer

55 Adler P Raff D Lauenroth W 2001 The effect ofgrazing on the spatial heterogeneity of vegetationOecologia 128 465ndash479 (doi101007s004420100737)

56 Packer A Clay K 2000 Soil pathogens and spatialpatterns of seedling mortality in a temperate treeNature 404 278ndash281 (doi10103835005072)

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

  • Introduction
  • Lattice-based simulation with environmental gradient
    • Model development
    • Model analysis
      • Field survey and aerial photography of seagrass meadows
        • Seagrass meadow locations
        • Survey protocol
        • Statistical modelling
          • Results
            • Simulations
            • Seagrass data analysis
              • Discussion
              • References
Page 7: Fractal measures of spatial pattern as a heuristic for ...sro.sussex.ac.uk/id/eprint/60356/1/150519.full.pdf · fractal measures and persistence exists. We combine theoretical arguments

6

rsosroyalsocietypublishingorgRSocopensci3150519

[46] The GAM fitting process implements a generalized cross-validation algorithm to assess the optimaldegree of nonlinearity Additionally we captured differences in within-site temporal variance as well asbetween-site correlation by incorporating a full variancendashcovariance matrix estimated directly from thedata (see [47] for full details of the method) The regressed value bi is then taken as the estimate for thereturn rate at site i [1748]

All analysis was performed using R v 312 (R Core Team 2014) with additional functions from thepackages ggmap ggplot2 and mgcv

4 ResultsThe spatial-dynamic persistence relationship was compared when either the environmental parametersor the demographic parameters were varied These relationships were then compared with theseagrass ecosystem where the dynamic persistence was measured from the annual longitudinalstudy and the spatial patchiness was measured from the aerial photographic survey described in themethods

41 SimulationsIn the initial investigation the dynamic and spatial parameters of the model were fixed and theenvironmental parameters were varied The Korcak exponent correlates strongly with the return ratethere is also a high likelihood for each fitted power-law distribution indicating a good fit of the exponent(figure 2ab) The gradient of the relationship was also found to vary depending on whether highcompetition or low competition was present

The environmental noise and gradient terms both have a large impact on the resulting return rate andKorcak exponent of the system (figure 3ab) A higher environmental gradient leads to a higher returnrate with a decreased spatial patchiness (lower Korcak exponent) This effect is also more pronouncedwhen the environmental noise term increases The return rate and spatial patchiness is at its greatestvalue where both the environmental gradient and noise are also at their greatest value

In the second simulation experiment the environmental parameters were fixed and the dynamic andspatial parameters were allowed to vary The resulting Korcak exponent (figure 4) gives no relationshipto the return rate Although the spatial scaling does vary (between 28 and 37) there is no clear emergentrelationship and a linear regression analysis finds no significant trend (p gt 005)

The simulation analysis therefore indicates that a negative-linear relationship is found when sites arenear equilibrium and when only environmental variables vary between sites

42 Seagrass data analysisDensity dependence analysis was undertaken to quantify the return rate of seagrass metapopulations inequilibrium at each survey site Here return rate is the negative of the gradient of the density-dependentresponse around equilibrium [48] Initially the fitted variancendashcovariance matrix was assessed Inclusionof empirical between-site spatial correlations did improve model fit (Likelihood ratio = 344 df = 10p lt 0001) Generalized cross validation showed that a linear functional form rather than smoothingsplines was the best fit at all sites except Old Grimsby Harbour making direct estimation of return ratesstraightforward in all but that case (figure 5) Return rates are shown in table 2 At three survey sitesBroad Ledges Tresco (blt) Higher Town Bay (htb) and West Broad Ledges (wbl) the null hypothesisof random walk dynamics was rejected in favour of density-dependent population regulation [13]However at Little Arthur (la) and Old Grimsby Harbour (ogh) statistically significant return rates couldnot be estimated (figure 5)

Seagrass persisted at all five survey sites throughout the length of the study (figure 5) There wasno evidence of temporal autocorrelation in the time series (Likelihood ratio = 082 p = 037) The onlysite to show a significant linear trend (decline) was Old Grimsby Harbour (t = 396 p lt 0001) We foundthe expected inverse relationship between the power-law exponent of the patch size distribution (theKorcak exponent) and the dynamic return rate for survey sites that were confirmed as having stationarytemporal dynamics (figure 6) However two sites were excluded as they failed to meet this assumptionOld Grimsby Harbour is evidently in sharp decline (figure 5) and Little Arthur while maintaining highpatch occupancy throughout the survey period could not be confirmed as being stationary (figure 5 andtable 2)

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

7

rsosroyalsocietypublishingorgRSocopensci3150519

0 01 0210

15

20

25

30

35

return rate

Kor

cak

expo

nent

10

ndash50

ndash100

ndash150

ndash20015

20

25

30

35

Kor

cak

expo

nent

0 01 02return rate

log-

likel

ihoo

d

(a) (b)

Figure 2 Relationship between return rate and Korcak dimension for high and low competition where environmental parameterswere varied Other parameters were kept constant at σ1 = 05 σ2 = 1 and μ = 02 The log-likelihood indicates goodness of fit tothe spatial data where higher values indicate a better fit (a) Korcak dimension (low k) and (b) Korcak dimension (high k)

100018 32

302826242220181614

016014012010008006004002

075

x

g

050

025

100

retu

rn r

ate

Kor

cak

expo

nent

075050025

100

075

x

g

050

025

100075050025

(b)(a)

Figure 3 Resulting values of (a) return rate and (b) Korcak exponent for environmental noise (ξ ) and environmental gradient (γ )where competition (k) is low Both environmental noise and gradient have a large impact on both the static and dynamic properties ofthe system A sharper gradient increases the return rate and this effect is more pronounced for higher environmental noise The gradientterm also decreases the patchiness of the vegetation distribution (lower exponent) and this effect again increases for higher valuesof noise

002 004 006 008 01027

28

29

30

31

32

33

34

35

36

37

Kor

cak

expo

nent

return rate

log-

likel

ihoo

d

minus250

minus200

minus150

minus100

minus50

Figure 4 Varying the dynamic parameters k and μ for fixed spatial and environment parameters σ1 = 05 σ2 = 1 γ = 05 andξ = 01 There is a lack of strong correlation between the Korcak dimension and the return rate

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

8

rsosroyalsocietypublishingorgRSocopensci3150519

blt htb wbl la ogh

05

2000 2000 2000 2000 20002010 2010 2010 2010 2010year year year year year

dens

ity o

ccup

ied

quad

rats

log

(Nt+

1N

t)de

nsity

0

06

04

02

0

ndash02

ndash04

10

ndash0604 05 06 07

Nt

08 09 10 04 05 06 07Nt

08 09 10 04 05 06 07Nt

08 09 10 04 05 06 07Nt

08 09 10 04 05 06 07Nt

08 09 10

105

10ndash3

10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10

10

Figure 5 Time-series and patch-size data from five survey sites around the Isles of Scilly UK (blt Broad Ledges Tresco htb Higher TownBay wbl West Broad Ledges la Little Arthur ogh Old Grimsby Harbour) The three sites used in the study are on the left with the twoexcluded on the right Top row Data points represent proportions of occupied 25 times 25 cm quadrats for the years 1996ndash2014Middle rowTransformed data comparing density at year t to log(Nt+1Nt) Regression line for return rate shown in black with 95 confidence limitshown as a red dashed line Bottom row Patch-size distribution for five sites with normalized frequency A solid line with a scaling of 2has been added for clarity

Table 2 Estimated return rates and Korcak exponent for the five seagrass survey sites Also given are the standard error (se) of thereturn rate fit along with the t-value and corresponding p-value and the 95 CIs for the Korcak exponent estimated through bootstrapre-sampling

site return rate se t-value (df= 50) p-value Korcak exponent 95 CI

blt 0857 0307 279 0007 1775 (1773 1776)

htb 0718 0296 233 0023 1869 (1866 1869)

la 0943 0618 152 0134 1761 (1758 1762)

ogh na na na na 1811 (1806 1813)

wbl 0930 0294 304 0004 1740 (1735 1740)

5 DiscussionThere has recently been increasing interest in finding generic spatial indicators of ecosystem pressureor collapse [2249] however until now there has been little validation of these spatial indicatorsagainst long-term population data We have demonstrated for a particular ecosystem under whatcircumstances there should be a connection between the dynamic persistence defined using the returnrate to population equilibrium and the spatial persistence defined using the Korcak exponent Thesimulations derived from a model of a spatial dynamic vegetation system in the presence of demographiccompetition and an environmental gradient demonstrated that a strong relationship exists only whenenvironmental parameters vary between sites This relationship was then compared with a long-termseagrass study where a similar relationship was found for the sites where the return rate couldbe measured

We have found that a relationship between the Korcak exponent and the return rate only exists whencertain factors are present Numerical simulation indicates a strong relationship between the Korcakexponent and the rate of return to equilibrium when only properties of the environment are altered Thisrelationship was supported to a limited extent by data obtained from the long-term study of seagrass To

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

9

rsosroyalsocietypublishingorgRSocopensci3150519

return rate05 06 07 08 09 10 11 12 13

Kor

cak

expo

nent

15

16

17

18

19

20

21

BLT

HTB

LA

WBL

95 CI85 CI

Figure 6 Korcak return rate relationship for surveyed vegetation Empirical seagrass data for three sites surveyed is shown as labelledpoints withplusmnse error bars for both return rate and Korcak exponent where the Korcak exponent errors were found through bootstrapre-sampling [50] Although Little Arthur (LA) did not have a statistically significant return rate this has been plotted here for clarityThe diagonal solid band describes the inverse relationship reproduced by the PCA model over a range of environmental parameters Theoverall simulation rate is set using known parameters of death and recruitment for Zostera marina [51] The other simulation parameterswere set arbitrarily and hence show a qualitative as opposed to quantitative similarity with the data

our knowledge this is the first time a direct comparison has been possible between time-series and spatialsnapshot data on the same natural system The strategy of coupling rigorous modelling developmentwith high-quality long-term field study is a powerful approach for making generalizable inferencebased on biologically well-supported assumptions and observation In particular analysis of where thepredicted relationship breaks down in nature where the demographic parameters between locations aresignificantly different provides useful motivation and insight for further theoretical exploration

Using a PCA model we predict a strong negative linear relationship between the Korcak exponentand the return rate over a wide range of parametersmdashin fact all parameters that generate return ratesabove 005 (figure 2) This reversal of the relationship can be observed when there is no environmentalgradient present (figure 3) While variation in environmental parameters gave a strong Korcakndashreturnrate relationship this was not duplicated when the dynamic (species-specific) parameters were varied(figure 4) Instead a very low correlation relationship was found These results highlight the practicalusefulness and potential shortcomings of this method for discerning the return rate and hence persistenceof a species from its spatial pattern The change in gradient due to high- and low-competition (k) valuesalso gives an indication of how comparisons of the Korcak exponent should be implemented (figure 2) Ifendogenous parameters (k σ1 σ2 μ) are fixed then a monotonic relationship is produced with a gradientthat is dependent on those endogenous parameters This suggests that while in some settings the Korcakexponent does correlate with the return rate of the system and thus its persistence this is not true ingeneral Other studies have recently highlighted similar results that generic indicators of a catastrophicshift may not hold generally across all settings [192352]

Our results indicate a Korcakndashpersistence relationship in a long-term study with an aerialphotographic survey Vegetation density data in the form of a 20-year quadrat survey from the Isles ofScilly UK was used to estimate the return rate for five distinct lsquomeadowsrsquo This was compared withthe Korcak exponent measured from the patch-size distribution obtained via an aerial photographicsurvey conducted towards the end of the study The same negatively correlated Korcakndashpersistencerelationship was found from this data and has qualitative agreement with the simulation study subjectto the limitations of assuming equilibrium dynamics already noted The model is simplistic in natureand may not fully capture the variety of complex interactions occurring in a vegetation system indeeddiffering model assumptions can lead to different conclusions based on spatial indicators [1952] Thecomparison between the data and model then is given to illustrate the general form of the relationshipA model with more realistic assumptions and fitted parameters may better reproduce the observedrelationship therefore This gives a tantalizing glimpse of how high-resolution remote-sensing techniquescould support some more traditional ecological survey techniques when answering questions about thedynamical persistence of an ecosystem As has recently been pointed out these spatial techniques would

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

10

rsosroyalsocietypublishingorgRSocopensci3150519

be system-dependent and further validation against empirical data is required before drawing robustconclusions from spatial snapshots alone [52]

In the event only three out of five sites assessed showed the predicted relationship between spatialand temporal statistics In both cases where the relationship between spatial and temporal dynamicsfell down it was due to being unable to reliably estimate a return rate from time-series analysis Atone site (Little Arthur) coverage by vegetation was very high for most of the time surveyed Althoughpopulation growth rate and density was reasonably described by a linear relationship (figure 5) thispresented too little information about response to perturbation to derive a statistically significant returnrate The other site not following the predicted relationship was Old Grimsby Harbour which is heavilydisturbed by boat traffic and can be seen to be declining precipitously (figure 5) These cases point tolimitations of classic time-series analysis It would require further validation of the Korcak exponentapproach to confidently use alongside time-series analysis

Sugihara [32] proposed that dynamics could be inferred from complexity of shape They illustratedthis point by using a fractional Brownian motion model where the Hurst exponent could be used todetect the persistence of the generating process Other studies [53] have used this relationship to explorehow measures of persistence can relate to dynamics however there has been no strong quantitative testof whether the spatial persistence of a landscape relates to the temporal persistence Here we have testedthe generality of this hypothesis by precisely defining dynamic persistence and then relating this to theshape of the resulting distribution Overall care must be taken when directly comparing spatial statisticsto temporal ones This general conclusion has also been recently highlighted in the context of comparingtruncations in the patch-size distribution to the proximity to a dynamic threshold [2223] Universalityof fractal growth processes leads to many spatial patterns that are similar in the sense that they sharethe same scaling relationship [54] For a fractal measure to be applied in the context of estimating areturn rate we believe that a strong mechanistic understanding of the underlying growth mechanismsis required which has similarly been found in a study of marine diatoms [24] We have focused onmechanisms where growth is locally positively correlated with surrounding vegetation and negativelycorrelated on larger scales However there may also be other spatially correlated processes in a vegetativesystem that lead to changes in the scaling properties of the system such as grazing [222355] or disease[56] It would be interesting to discern the Korcakndashpersistence relationship where such other factorsare present

Data accessibility The Isles of Scilly dataset including the patch sizes and occupancy for the five meadow sites can befound at httpdxdoiorg105061dryadr95s8Authorsrsquo contributions MAI MJK and JCB conceived the study MAI undertook the modelling with support fromMJK and JCB ELJ EJK KJC and JCB undertook the experimental work MAI MJK and JCB wrote themanuscript with suggestions and comments from all authorsCompeting interests The authors declare they have no competing interestsFunding The research in this article was in part funded by The University of Warwickrsquos EPSRC-funded DoctoralTraining Centre for Complexity Science

References1 Moffat AS 1994 Theoretical ecology winning its

spurs in the real world Science 263 1090ndash1092(doi101126science8108725)

2 Bascompte J Soleacute RV 1995 Rethinking complexitymodelling spatio-temporal dynamics in ecologyTrends Ecol Evol 10 361ndash366 (doi101016S0169-5347(00)89134-X)

3 Rietkerk M Van de Koppel J 2008 Regular patternformation in real ecosystems Trends Ecol Evol 23169ndash175 (doi101016jtree200710013)

4 Pascual M Guichard F 2005 Criticality anddisturbance in spatial ecological systems TrendsEcol Evol 20 88ndash95 (doi101016jtree200411012)

5 McIntire EJ Fajardo A 2009 Beyond description theactive and effective way to infer processes fromspatial patterns Ecology 90 46ndash56 (doi10189007-20961)

6 Borcard D Legendre P Avois-Jacquet C Tuomisto H2004 Dissecting the spatial structure of ecologicaldata at multiple scales Ecology 85 1826ndash1832(doi10189003-3111)

7 Jeltsch F Moloney K Milton SJ 1999 Detectingprocess from snapshot pattern lessons from treespacing in the southern Kalahari Oikos 85451ndash466 (doi1023073546695)

8 Silvertown J Wilson JB 1994 Community structurein a desert perennial community Ecology 75409ndash417 (doi1023071939544)

9 Eppinga MB de Ruiter PC Wassen MJ Rietkerk M2009 Nutrients and hydrology indicate the drivingmechanisms of peatland surface patterningAm Nat 173 803ndash818 (doi101086598487)

10 Liu QX Weerman EJ Herman PM Olff H van deKoppel J 2012 Alternative mechanisms alter theemergent properties of self-organization in mussel

beds Proc R Soc B 279 2744ndash2753(doi101098rspb20120157)

11 Liu QX Doelman A Rottschaumlfer V de Jager MHerman PM Rietkerk M van de Koppela J 2013Phase separation explains a new class ofself-organized spatial patterns in ecologicalsystems Proc Natl Acad Sci USA 110 11 905ndash11 910(doi101073pnas1222339110)

12 Dieckmann U Law R 2000 Relaxation projectionsand the method of moments In The geometry ofecological interactions simplifying spatialcomplexity (eds U Dieckmann R Law JAJ Metz)pp 412ndash455 Cambridge UK Cambridge UniversityPress

13 Dennis B Taper ML 1994 Density dependence intime series observations of natural populationsestimation and testing Ecol Monogr 64 205ndash224(doi1023072937041)

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

11

rsosroyalsocietypublishingorgRSocopensci3150519

14 Ives A Dennis B Cottingham K Carpenter S 2003

Estimating community stability and ecologicalinteractions from time-series data Ecol Monogr 73301ndash330 (doi1018900012-9615(2003)073[0301ECSAEI]20CO2)

15 Berryman A Turchin P 2001 Identifying thedensity-dependent structure underlying ecologicaltime series Oikos 92 265ndash270 (doi101034j1600-07062001920208x)

16 Holling CS 1996 Engineering resilience versusecological resilience In Engineering withinecological constraints (ed P Schulze) pp 31ndash44Washington DC National Academy

17 Sibly RM Barker D DenhamMC Hone J Pagel M2005 On the regulation of populations of mammalsbirds fish and insects Science 309 607ndash610(doi101126science1110760)

18 Legendre P Fortin MJ 1989 Spatial pattern andecological analysis Vegetatio 80 107ndash138(doi101007BF00048036)

19 Dakos V Keacutefi S Rietkerk M Van Nes EH Scheffer M2011 Slowing down in spatially patternedecosystems at the brink of collapse Am Nat 177E153ndashE166 (doi101086659945)

20 Mandelbrot BB 1983 The fractal geometry of natureNew York NY Macmillan

21 Scanlon TM Caylor KK Levin SA Rodriguez-Iturbe I2007 Positive feedbacks promote power-lawclustering of Kalahari vegetation Nature 449209ndash212 (doi101038nature06060)

22 Keacutefi S Rietkerk M Alados CL Pueyo Y PapanastasisVP ElAich A de Ruiter PC 2007 Spatial vegetationpatterns and imminent desertification inMediterranean arid ecosystems Nature 449213ndash217 (doi101038nature06111)

23 Maestre FT Escudero A 2009 Is the patch sizedistribution of vegetation a suitable indicator ofdesertification processes Ecology 90 1729ndash1735(doi10189008-20961)

24 Weerman E Van Belzen J Rietkerk M TemmermanS Keacutefi S Herman P Van de Koppel J 2012 Changesin diatom patch-size distribution and degradationin a spatially self-organized intertidal mudflatecosystem Ecology 93 608ndash618(doi10189011-06251)

25 Hastings HM Sugihara G 1993 Fractals a userrsquosguide for the natural sciences Oxford UK OxfordUniversity Press

26 Pascual M Roy M Guichard F Flierl G 2002 Clustersize distributions signatures of selfndashorganization inspatial ecologies Phil Trans R Soc Lond B 357657ndash666 (doi101098rstb20010983)

27 Vicsek T Family F 1984 Dynamic scaling foraggregation of clusters Phys Rev Lett 52 1669(doi101103PhysRevLett521669)

28 Irvine M Bull J Keeling M 2015 Aggregationdynamics explain vegetation patch-size

distributions Theor Popul Biol 108 70ndash74(doi101016jtpb201512001)

29 Xin Xp Gao Q Li Yy Yang Z 1999 Fractal analysis ofgrass patches under grazing and flood disturbancein an Alkaline grassland [J] Acta Bot Sin 41307ndash313

30 Imre AR Cseh D Neteler M Rocchini D 2011 Korcakdimension as a novel indicator of landscapefragmentation and re-forestation Ecol Indicators11 1134ndash1138 (doi101016jecolind201012013)

31 Erlandsson J McQuaid CD Skoumlld M 2011 Patchinessand co-existence of indigenous and invasivemussels at small spatial scales the interactionof facilitation and competition PLoS ONE 6e26958 (doi101371journalpone0026958)

32 Sugihara G May R 1990 Applications of fractals inecology Trends Ecol Evol 5 79ndash86(doi1010160169-5347(90)90235-6)

33 Imre AR Novotny J Rocchini D 2012 TheKorcak-exponent a non-fractal descriptor forlandscape patchiness Ecol Complexity 12 70ndash74(doi101016jecocom201210001)

34 Bull JC Kenyon EJ Cook KJ 2012 Wasting diseaseregulates long-term population dynamics in athreatened seagrass Oecologia 169 135ndash142(doi101007s00442-011-2187-6)

35 Jackson EL Higgs S Allsop T Cathray A Evans JLangmead O 2011 Isles of Scilly seagrass mappingNatural England NECR087

36 Orth RJ Moore KA 1988 Distribution of Zosteramarina L and Ruppia maritima L sensu lato alongdepth gradients in the lower Chesapeake Bay USAAquat Bot 32 291ndash305 (doi1010160304-3770(88)90122-2)

37 Krause-Jensen D Pedersen MF Jensen C 2003Regulation of eelgrass (Zostera marina) cover alongdepth gradients in Danish coastal waters Estuaries26 866ndash877 (doi101007BF02803345)

38 Balzter H Braun PW Koumlhler W 1998 Cellularautomata models for vegetation dynamics EcolModel 107 113ndash125 (doi101016S0304-3800(97)00202-0)

39 Hogeweg P 1988 Cellular automata as aparadigm for ecological modeling Appl MathComput27 81ndash100 (doi1010160096-3003(88)90100-2)

40 Lefever R Lejeune O 1997 On the origin of tigerbush Bull Math Biol 59 263ndash294 (doi101007BF02462004)

41 Clauset A Shalizi CR Newman ME 2009 Power-lawdistributions in empirical data SIAM Rev 51661ndash703 (doi101137070710111)

42 Lobelle D Kenyon EJ Cook KJ Bull JC 2013 Localcompetition and metapopulation processes drive

long-term seagrass-epiphyte population dynamicsPLoS ONE 8 e57072 (doi101371journalpone0057072)

43 Potouroglou M Kenyon EJ Gall A Cook KJ Bull JC2014 The roles of flowering overwinter survival andsea surface temperature in the long-termpopulation dynamics of Zostera marina around theIsles of Scilly UKMar Pollut Bull 83 500ndash507(doi101016jmarpolbul201403035)

44 Levins R 1969 Some demographic and geneticconsequences of environmental heterogeneity forbiological control Bull Entomol Soc Am 15237ndash240 (doi101093besa153237)

45 Royama T 1992 Analytical population dynamicsvol 10 Berlin Germany Springer Science ampBusiness Media

46 Bjoslashrnstad ON Begon M Stenseth NC Falck W SaitSM Thompson DJ 1998 Population dynamics of theIndian meal moth demographic stochasticity anddelayed regulatory mechanisms J Anim Ecol 67110ndash126 (doi101046j1365-2656199800168x)

47 Wood S 2006 Generalized additive models anintroduction with R Boca Raton FL CRC Press

48 Sibly RM Barker D Hone J Pagel M 2007 On thestability of populations of mammals birds fish andinsects Ecol Lett 10 970ndash976(doi101111j1461-0248200701092x)

49 Keacutefi S Rietkerk M Roy M Franc A De Ruiter PCPascual M 2011 Robust scaling in ecosystems andthe meltdown of patch size distributions beforeextinction Ecol Lett 14 29ndash35 (doi101111j1461-0248201001553x)

50 Efron B 1981 Nonparametric estimates of standarderror the jackknife the bootstrap and othermethods Biometrika 68 589ndash599(doi101093biomet683589)

51 Larkum AW Orth RJ Duarte C 2006 Seagrassesbiology ecology and conservation Berlin GermanySpringer

52 Keacutefi S et al 2014 Early warning signals of ecologicaltransitions methods for spatial patterns PLoS ONE9 e92097 (doi101371journalpone0092097)

53 Cunha A Santos R Gaspar A Bairros M 2005Seagrass landscape-scale changes in response todisturbance created by the dynamics ofbarrier-islands a case study from Ria Formosa(Southern Portugal) Estuar Coast Shelf Sci 64636ndash644 (doi101016jecss200503018)

54 Bunde A Havlin S 1991 Fractals and disorderedsystems New York NY Springer

55 Adler P Raff D Lauenroth W 2001 The effect ofgrazing on the spatial heterogeneity of vegetationOecologia 128 465ndash479 (doi101007s004420100737)

56 Packer A Clay K 2000 Soil pathogens and spatialpatterns of seedling mortality in a temperate treeNature 404 278ndash281 (doi10103835005072)

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

  • Introduction
  • Lattice-based simulation with environmental gradient
    • Model development
    • Model analysis
      • Field survey and aerial photography of seagrass meadows
        • Seagrass meadow locations
        • Survey protocol
        • Statistical modelling
          • Results
            • Simulations
            • Seagrass data analysis
              • Discussion
              • References
Page 8: Fractal measures of spatial pattern as a heuristic for ...sro.sussex.ac.uk/id/eprint/60356/1/150519.full.pdf · fractal measures and persistence exists. We combine theoretical arguments

7

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0 01 0210

15

20

25

30

35

return rate

Kor

cak

expo

nent

10

ndash50

ndash100

ndash150

ndash20015

20

25

30

35

Kor

cak

expo

nent

0 01 02return rate

log-

likel

ihoo

d

(a) (b)

Figure 2 Relationship between return rate and Korcak dimension for high and low competition where environmental parameterswere varied Other parameters were kept constant at σ1 = 05 σ2 = 1 and μ = 02 The log-likelihood indicates goodness of fit tothe spatial data where higher values indicate a better fit (a) Korcak dimension (low k) and (b) Korcak dimension (high k)

100018 32

302826242220181614

016014012010008006004002

075

x

g

050

025

100

retu

rn r

ate

Kor

cak

expo

nent

075050025

100

075

x

g

050

025

100075050025

(b)(a)

Figure 3 Resulting values of (a) return rate and (b) Korcak exponent for environmental noise (ξ ) and environmental gradient (γ )where competition (k) is low Both environmental noise and gradient have a large impact on both the static and dynamic properties ofthe system A sharper gradient increases the return rate and this effect is more pronounced for higher environmental noise The gradientterm also decreases the patchiness of the vegetation distribution (lower exponent) and this effect again increases for higher valuesof noise

002 004 006 008 01027

28

29

30

31

32

33

34

35

36

37

Kor

cak

expo

nent

return rate

log-

likel

ihoo

d

minus250

minus200

minus150

minus100

minus50

Figure 4 Varying the dynamic parameters k and μ for fixed spatial and environment parameters σ1 = 05 σ2 = 1 γ = 05 andξ = 01 There is a lack of strong correlation between the Korcak dimension and the return rate

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

8

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blt htb wbl la ogh

05

2000 2000 2000 2000 20002010 2010 2010 2010 2010year year year year year

dens

ity o

ccup

ied

quad

rats

log

(Nt+

1N

t)de

nsity

0

06

04

02

0

ndash02

ndash04

10

ndash0604 05 06 07

Nt

08 09 10 04 05 06 07Nt

08 09 10 04 05 06 07Nt

08 09 10 04 05 06 07Nt

08 09 10 04 05 06 07Nt

08 09 10

105

10ndash3

10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10

10

Figure 5 Time-series and patch-size data from five survey sites around the Isles of Scilly UK (blt Broad Ledges Tresco htb Higher TownBay wbl West Broad Ledges la Little Arthur ogh Old Grimsby Harbour) The three sites used in the study are on the left with the twoexcluded on the right Top row Data points represent proportions of occupied 25 times 25 cm quadrats for the years 1996ndash2014Middle rowTransformed data comparing density at year t to log(Nt+1Nt) Regression line for return rate shown in black with 95 confidence limitshown as a red dashed line Bottom row Patch-size distribution for five sites with normalized frequency A solid line with a scaling of 2has been added for clarity

Table 2 Estimated return rates and Korcak exponent for the five seagrass survey sites Also given are the standard error (se) of thereturn rate fit along with the t-value and corresponding p-value and the 95 CIs for the Korcak exponent estimated through bootstrapre-sampling

site return rate se t-value (df= 50) p-value Korcak exponent 95 CI

blt 0857 0307 279 0007 1775 (1773 1776)

htb 0718 0296 233 0023 1869 (1866 1869)

la 0943 0618 152 0134 1761 (1758 1762)

ogh na na na na 1811 (1806 1813)

wbl 0930 0294 304 0004 1740 (1735 1740)

5 DiscussionThere has recently been increasing interest in finding generic spatial indicators of ecosystem pressureor collapse [2249] however until now there has been little validation of these spatial indicatorsagainst long-term population data We have demonstrated for a particular ecosystem under whatcircumstances there should be a connection between the dynamic persistence defined using the returnrate to population equilibrium and the spatial persistence defined using the Korcak exponent Thesimulations derived from a model of a spatial dynamic vegetation system in the presence of demographiccompetition and an environmental gradient demonstrated that a strong relationship exists only whenenvironmental parameters vary between sites This relationship was then compared with a long-termseagrass study where a similar relationship was found for the sites where the return rate couldbe measured

We have found that a relationship between the Korcak exponent and the return rate only exists whencertain factors are present Numerical simulation indicates a strong relationship between the Korcakexponent and the rate of return to equilibrium when only properties of the environment are altered Thisrelationship was supported to a limited extent by data obtained from the long-term study of seagrass To

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

9

rsosroyalsocietypublishingorgRSocopensci3150519

return rate05 06 07 08 09 10 11 12 13

Kor

cak

expo

nent

15

16

17

18

19

20

21

BLT

HTB

LA

WBL

95 CI85 CI

Figure 6 Korcak return rate relationship for surveyed vegetation Empirical seagrass data for three sites surveyed is shown as labelledpoints withplusmnse error bars for both return rate and Korcak exponent where the Korcak exponent errors were found through bootstrapre-sampling [50] Although Little Arthur (LA) did not have a statistically significant return rate this has been plotted here for clarityThe diagonal solid band describes the inverse relationship reproduced by the PCA model over a range of environmental parameters Theoverall simulation rate is set using known parameters of death and recruitment for Zostera marina [51] The other simulation parameterswere set arbitrarily and hence show a qualitative as opposed to quantitative similarity with the data

our knowledge this is the first time a direct comparison has been possible between time-series and spatialsnapshot data on the same natural system The strategy of coupling rigorous modelling developmentwith high-quality long-term field study is a powerful approach for making generalizable inferencebased on biologically well-supported assumptions and observation In particular analysis of where thepredicted relationship breaks down in nature where the demographic parameters between locations aresignificantly different provides useful motivation and insight for further theoretical exploration

Using a PCA model we predict a strong negative linear relationship between the Korcak exponentand the return rate over a wide range of parametersmdashin fact all parameters that generate return ratesabove 005 (figure 2) This reversal of the relationship can be observed when there is no environmentalgradient present (figure 3) While variation in environmental parameters gave a strong Korcakndashreturnrate relationship this was not duplicated when the dynamic (species-specific) parameters were varied(figure 4) Instead a very low correlation relationship was found These results highlight the practicalusefulness and potential shortcomings of this method for discerning the return rate and hence persistenceof a species from its spatial pattern The change in gradient due to high- and low-competition (k) valuesalso gives an indication of how comparisons of the Korcak exponent should be implemented (figure 2) Ifendogenous parameters (k σ1 σ2 μ) are fixed then a monotonic relationship is produced with a gradientthat is dependent on those endogenous parameters This suggests that while in some settings the Korcakexponent does correlate with the return rate of the system and thus its persistence this is not true ingeneral Other studies have recently highlighted similar results that generic indicators of a catastrophicshift may not hold generally across all settings [192352]

Our results indicate a Korcakndashpersistence relationship in a long-term study with an aerialphotographic survey Vegetation density data in the form of a 20-year quadrat survey from the Isles ofScilly UK was used to estimate the return rate for five distinct lsquomeadowsrsquo This was compared withthe Korcak exponent measured from the patch-size distribution obtained via an aerial photographicsurvey conducted towards the end of the study The same negatively correlated Korcakndashpersistencerelationship was found from this data and has qualitative agreement with the simulation study subjectto the limitations of assuming equilibrium dynamics already noted The model is simplistic in natureand may not fully capture the variety of complex interactions occurring in a vegetation system indeeddiffering model assumptions can lead to different conclusions based on spatial indicators [1952] Thecomparison between the data and model then is given to illustrate the general form of the relationshipA model with more realistic assumptions and fitted parameters may better reproduce the observedrelationship therefore This gives a tantalizing glimpse of how high-resolution remote-sensing techniquescould support some more traditional ecological survey techniques when answering questions about thedynamical persistence of an ecosystem As has recently been pointed out these spatial techniques would

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

10

rsosroyalsocietypublishingorgRSocopensci3150519

be system-dependent and further validation against empirical data is required before drawing robustconclusions from spatial snapshots alone [52]

In the event only three out of five sites assessed showed the predicted relationship between spatialand temporal statistics In both cases where the relationship between spatial and temporal dynamicsfell down it was due to being unable to reliably estimate a return rate from time-series analysis Atone site (Little Arthur) coverage by vegetation was very high for most of the time surveyed Althoughpopulation growth rate and density was reasonably described by a linear relationship (figure 5) thispresented too little information about response to perturbation to derive a statistically significant returnrate The other site not following the predicted relationship was Old Grimsby Harbour which is heavilydisturbed by boat traffic and can be seen to be declining precipitously (figure 5) These cases point tolimitations of classic time-series analysis It would require further validation of the Korcak exponentapproach to confidently use alongside time-series analysis

Sugihara [32] proposed that dynamics could be inferred from complexity of shape They illustratedthis point by using a fractional Brownian motion model where the Hurst exponent could be used todetect the persistence of the generating process Other studies [53] have used this relationship to explorehow measures of persistence can relate to dynamics however there has been no strong quantitative testof whether the spatial persistence of a landscape relates to the temporal persistence Here we have testedthe generality of this hypothesis by precisely defining dynamic persistence and then relating this to theshape of the resulting distribution Overall care must be taken when directly comparing spatial statisticsto temporal ones This general conclusion has also been recently highlighted in the context of comparingtruncations in the patch-size distribution to the proximity to a dynamic threshold [2223] Universalityof fractal growth processes leads to many spatial patterns that are similar in the sense that they sharethe same scaling relationship [54] For a fractal measure to be applied in the context of estimating areturn rate we believe that a strong mechanistic understanding of the underlying growth mechanismsis required which has similarly been found in a study of marine diatoms [24] We have focused onmechanisms where growth is locally positively correlated with surrounding vegetation and negativelycorrelated on larger scales However there may also be other spatially correlated processes in a vegetativesystem that lead to changes in the scaling properties of the system such as grazing [222355] or disease[56] It would be interesting to discern the Korcakndashpersistence relationship where such other factorsare present

Data accessibility The Isles of Scilly dataset including the patch sizes and occupancy for the five meadow sites can befound at httpdxdoiorg105061dryadr95s8Authorsrsquo contributions MAI MJK and JCB conceived the study MAI undertook the modelling with support fromMJK and JCB ELJ EJK KJC and JCB undertook the experimental work MAI MJK and JCB wrote themanuscript with suggestions and comments from all authorsCompeting interests The authors declare they have no competing interestsFunding The research in this article was in part funded by The University of Warwickrsquos EPSRC-funded DoctoralTraining Centre for Complexity Science

References1 Moffat AS 1994 Theoretical ecology winning its

spurs in the real world Science 263 1090ndash1092(doi101126science8108725)

2 Bascompte J Soleacute RV 1995 Rethinking complexitymodelling spatio-temporal dynamics in ecologyTrends Ecol Evol 10 361ndash366 (doi101016S0169-5347(00)89134-X)

3 Rietkerk M Van de Koppel J 2008 Regular patternformation in real ecosystems Trends Ecol Evol 23169ndash175 (doi101016jtree200710013)

4 Pascual M Guichard F 2005 Criticality anddisturbance in spatial ecological systems TrendsEcol Evol 20 88ndash95 (doi101016jtree200411012)

5 McIntire EJ Fajardo A 2009 Beyond description theactive and effective way to infer processes fromspatial patterns Ecology 90 46ndash56 (doi10189007-20961)

6 Borcard D Legendre P Avois-Jacquet C Tuomisto H2004 Dissecting the spatial structure of ecologicaldata at multiple scales Ecology 85 1826ndash1832(doi10189003-3111)

7 Jeltsch F Moloney K Milton SJ 1999 Detectingprocess from snapshot pattern lessons from treespacing in the southern Kalahari Oikos 85451ndash466 (doi1023073546695)

8 Silvertown J Wilson JB 1994 Community structurein a desert perennial community Ecology 75409ndash417 (doi1023071939544)

9 Eppinga MB de Ruiter PC Wassen MJ Rietkerk M2009 Nutrients and hydrology indicate the drivingmechanisms of peatland surface patterningAm Nat 173 803ndash818 (doi101086598487)

10 Liu QX Weerman EJ Herman PM Olff H van deKoppel J 2012 Alternative mechanisms alter theemergent properties of self-organization in mussel

beds Proc R Soc B 279 2744ndash2753(doi101098rspb20120157)

11 Liu QX Doelman A Rottschaumlfer V de Jager MHerman PM Rietkerk M van de Koppela J 2013Phase separation explains a new class ofself-organized spatial patterns in ecologicalsystems Proc Natl Acad Sci USA 110 11 905ndash11 910(doi101073pnas1222339110)

12 Dieckmann U Law R 2000 Relaxation projectionsand the method of moments In The geometry ofecological interactions simplifying spatialcomplexity (eds U Dieckmann R Law JAJ Metz)pp 412ndash455 Cambridge UK Cambridge UniversityPress

13 Dennis B Taper ML 1994 Density dependence intime series observations of natural populationsestimation and testing Ecol Monogr 64 205ndash224(doi1023072937041)

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

11

rsosroyalsocietypublishingorgRSocopensci3150519

14 Ives A Dennis B Cottingham K Carpenter S 2003

Estimating community stability and ecologicalinteractions from time-series data Ecol Monogr 73301ndash330 (doi1018900012-9615(2003)073[0301ECSAEI]20CO2)

15 Berryman A Turchin P 2001 Identifying thedensity-dependent structure underlying ecologicaltime series Oikos 92 265ndash270 (doi101034j1600-07062001920208x)

16 Holling CS 1996 Engineering resilience versusecological resilience In Engineering withinecological constraints (ed P Schulze) pp 31ndash44Washington DC National Academy

17 Sibly RM Barker D DenhamMC Hone J Pagel M2005 On the regulation of populations of mammalsbirds fish and insects Science 309 607ndash610(doi101126science1110760)

18 Legendre P Fortin MJ 1989 Spatial pattern andecological analysis Vegetatio 80 107ndash138(doi101007BF00048036)

19 Dakos V Keacutefi S Rietkerk M Van Nes EH Scheffer M2011 Slowing down in spatially patternedecosystems at the brink of collapse Am Nat 177E153ndashE166 (doi101086659945)

20 Mandelbrot BB 1983 The fractal geometry of natureNew York NY Macmillan

21 Scanlon TM Caylor KK Levin SA Rodriguez-Iturbe I2007 Positive feedbacks promote power-lawclustering of Kalahari vegetation Nature 449209ndash212 (doi101038nature06060)

22 Keacutefi S Rietkerk M Alados CL Pueyo Y PapanastasisVP ElAich A de Ruiter PC 2007 Spatial vegetationpatterns and imminent desertification inMediterranean arid ecosystems Nature 449213ndash217 (doi101038nature06111)

23 Maestre FT Escudero A 2009 Is the patch sizedistribution of vegetation a suitable indicator ofdesertification processes Ecology 90 1729ndash1735(doi10189008-20961)

24 Weerman E Van Belzen J Rietkerk M TemmermanS Keacutefi S Herman P Van de Koppel J 2012 Changesin diatom patch-size distribution and degradationin a spatially self-organized intertidal mudflatecosystem Ecology 93 608ndash618(doi10189011-06251)

25 Hastings HM Sugihara G 1993 Fractals a userrsquosguide for the natural sciences Oxford UK OxfordUniversity Press

26 Pascual M Roy M Guichard F Flierl G 2002 Clustersize distributions signatures of selfndashorganization inspatial ecologies Phil Trans R Soc Lond B 357657ndash666 (doi101098rstb20010983)

27 Vicsek T Family F 1984 Dynamic scaling foraggregation of clusters Phys Rev Lett 52 1669(doi101103PhysRevLett521669)

28 Irvine M Bull J Keeling M 2015 Aggregationdynamics explain vegetation patch-size

distributions Theor Popul Biol 108 70ndash74(doi101016jtpb201512001)

29 Xin Xp Gao Q Li Yy Yang Z 1999 Fractal analysis ofgrass patches under grazing and flood disturbancein an Alkaline grassland [J] Acta Bot Sin 41307ndash313

30 Imre AR Cseh D Neteler M Rocchini D 2011 Korcakdimension as a novel indicator of landscapefragmentation and re-forestation Ecol Indicators11 1134ndash1138 (doi101016jecolind201012013)

31 Erlandsson J McQuaid CD Skoumlld M 2011 Patchinessand co-existence of indigenous and invasivemussels at small spatial scales the interactionof facilitation and competition PLoS ONE 6e26958 (doi101371journalpone0026958)

32 Sugihara G May R 1990 Applications of fractals inecology Trends Ecol Evol 5 79ndash86(doi1010160169-5347(90)90235-6)

33 Imre AR Novotny J Rocchini D 2012 TheKorcak-exponent a non-fractal descriptor forlandscape patchiness Ecol Complexity 12 70ndash74(doi101016jecocom201210001)

34 Bull JC Kenyon EJ Cook KJ 2012 Wasting diseaseregulates long-term population dynamics in athreatened seagrass Oecologia 169 135ndash142(doi101007s00442-011-2187-6)

35 Jackson EL Higgs S Allsop T Cathray A Evans JLangmead O 2011 Isles of Scilly seagrass mappingNatural England NECR087

36 Orth RJ Moore KA 1988 Distribution of Zosteramarina L and Ruppia maritima L sensu lato alongdepth gradients in the lower Chesapeake Bay USAAquat Bot 32 291ndash305 (doi1010160304-3770(88)90122-2)

37 Krause-Jensen D Pedersen MF Jensen C 2003Regulation of eelgrass (Zostera marina) cover alongdepth gradients in Danish coastal waters Estuaries26 866ndash877 (doi101007BF02803345)

38 Balzter H Braun PW Koumlhler W 1998 Cellularautomata models for vegetation dynamics EcolModel 107 113ndash125 (doi101016S0304-3800(97)00202-0)

39 Hogeweg P 1988 Cellular automata as aparadigm for ecological modeling Appl MathComput27 81ndash100 (doi1010160096-3003(88)90100-2)

40 Lefever R Lejeune O 1997 On the origin of tigerbush Bull Math Biol 59 263ndash294 (doi101007BF02462004)

41 Clauset A Shalizi CR Newman ME 2009 Power-lawdistributions in empirical data SIAM Rev 51661ndash703 (doi101137070710111)

42 Lobelle D Kenyon EJ Cook KJ Bull JC 2013 Localcompetition and metapopulation processes drive

long-term seagrass-epiphyte population dynamicsPLoS ONE 8 e57072 (doi101371journalpone0057072)

43 Potouroglou M Kenyon EJ Gall A Cook KJ Bull JC2014 The roles of flowering overwinter survival andsea surface temperature in the long-termpopulation dynamics of Zostera marina around theIsles of Scilly UKMar Pollut Bull 83 500ndash507(doi101016jmarpolbul201403035)

44 Levins R 1969 Some demographic and geneticconsequences of environmental heterogeneity forbiological control Bull Entomol Soc Am 15237ndash240 (doi101093besa153237)

45 Royama T 1992 Analytical population dynamicsvol 10 Berlin Germany Springer Science ampBusiness Media

46 Bjoslashrnstad ON Begon M Stenseth NC Falck W SaitSM Thompson DJ 1998 Population dynamics of theIndian meal moth demographic stochasticity anddelayed regulatory mechanisms J Anim Ecol 67110ndash126 (doi101046j1365-2656199800168x)

47 Wood S 2006 Generalized additive models anintroduction with R Boca Raton FL CRC Press

48 Sibly RM Barker D Hone J Pagel M 2007 On thestability of populations of mammals birds fish andinsects Ecol Lett 10 970ndash976(doi101111j1461-0248200701092x)

49 Keacutefi S Rietkerk M Roy M Franc A De Ruiter PCPascual M 2011 Robust scaling in ecosystems andthe meltdown of patch size distributions beforeextinction Ecol Lett 14 29ndash35 (doi101111j1461-0248201001553x)

50 Efron B 1981 Nonparametric estimates of standarderror the jackknife the bootstrap and othermethods Biometrika 68 589ndash599(doi101093biomet683589)

51 Larkum AW Orth RJ Duarte C 2006 Seagrassesbiology ecology and conservation Berlin GermanySpringer

52 Keacutefi S et al 2014 Early warning signals of ecologicaltransitions methods for spatial patterns PLoS ONE9 e92097 (doi101371journalpone0092097)

53 Cunha A Santos R Gaspar A Bairros M 2005Seagrass landscape-scale changes in response todisturbance created by the dynamics ofbarrier-islands a case study from Ria Formosa(Southern Portugal) Estuar Coast Shelf Sci 64636ndash644 (doi101016jecss200503018)

54 Bunde A Havlin S 1991 Fractals and disorderedsystems New York NY Springer

55 Adler P Raff D Lauenroth W 2001 The effect ofgrazing on the spatial heterogeneity of vegetationOecologia 128 465ndash479 (doi101007s004420100737)

56 Packer A Clay K 2000 Soil pathogens and spatialpatterns of seedling mortality in a temperate treeNature 404 278ndash281 (doi10103835005072)

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

  • Introduction
  • Lattice-based simulation with environmental gradient
    • Model development
    • Model analysis
      • Field survey and aerial photography of seagrass meadows
        • Seagrass meadow locations
        • Survey protocol
        • Statistical modelling
          • Results
            • Simulations
            • Seagrass data analysis
              • Discussion
              • References
Page 9: Fractal measures of spatial pattern as a heuristic for ...sro.sussex.ac.uk/id/eprint/60356/1/150519.full.pdf · fractal measures and persistence exists. We combine theoretical arguments

8

rsosroyalsocietypublishingorgRSocopensci3150519

blt htb wbl la ogh

05

2000 2000 2000 2000 20002010 2010 2010 2010 2010year year year year year

dens

ity o

ccup

ied

quad

rats

log

(Nt+

1N

t)de

nsity

0

06

04

02

0

ndash02

ndash04

10

ndash0604 05 06 07

Nt

08 09 10 04 05 06 07Nt

08 09 10 04 05 06 07Nt

08 09 10 04 05 06 07Nt

08 09 10 04 05 06 07Nt

08 09 10

105

10ndash3

10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10 10ndash3 10ndash1

patch size (km2)10

10

Figure 5 Time-series and patch-size data from five survey sites around the Isles of Scilly UK (blt Broad Ledges Tresco htb Higher TownBay wbl West Broad Ledges la Little Arthur ogh Old Grimsby Harbour) The three sites used in the study are on the left with the twoexcluded on the right Top row Data points represent proportions of occupied 25 times 25 cm quadrats for the years 1996ndash2014Middle rowTransformed data comparing density at year t to log(Nt+1Nt) Regression line for return rate shown in black with 95 confidence limitshown as a red dashed line Bottom row Patch-size distribution for five sites with normalized frequency A solid line with a scaling of 2has been added for clarity

Table 2 Estimated return rates and Korcak exponent for the five seagrass survey sites Also given are the standard error (se) of thereturn rate fit along with the t-value and corresponding p-value and the 95 CIs for the Korcak exponent estimated through bootstrapre-sampling

site return rate se t-value (df= 50) p-value Korcak exponent 95 CI

blt 0857 0307 279 0007 1775 (1773 1776)

htb 0718 0296 233 0023 1869 (1866 1869)

la 0943 0618 152 0134 1761 (1758 1762)

ogh na na na na 1811 (1806 1813)

wbl 0930 0294 304 0004 1740 (1735 1740)

5 DiscussionThere has recently been increasing interest in finding generic spatial indicators of ecosystem pressureor collapse [2249] however until now there has been little validation of these spatial indicatorsagainst long-term population data We have demonstrated for a particular ecosystem under whatcircumstances there should be a connection between the dynamic persistence defined using the returnrate to population equilibrium and the spatial persistence defined using the Korcak exponent Thesimulations derived from a model of a spatial dynamic vegetation system in the presence of demographiccompetition and an environmental gradient demonstrated that a strong relationship exists only whenenvironmental parameters vary between sites This relationship was then compared with a long-termseagrass study where a similar relationship was found for the sites where the return rate couldbe measured

We have found that a relationship between the Korcak exponent and the return rate only exists whencertain factors are present Numerical simulation indicates a strong relationship between the Korcakexponent and the rate of return to equilibrium when only properties of the environment are altered Thisrelationship was supported to a limited extent by data obtained from the long-term study of seagrass To

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

9

rsosroyalsocietypublishingorgRSocopensci3150519

return rate05 06 07 08 09 10 11 12 13

Kor

cak

expo

nent

15

16

17

18

19

20

21

BLT

HTB

LA

WBL

95 CI85 CI

Figure 6 Korcak return rate relationship for surveyed vegetation Empirical seagrass data for three sites surveyed is shown as labelledpoints withplusmnse error bars for both return rate and Korcak exponent where the Korcak exponent errors were found through bootstrapre-sampling [50] Although Little Arthur (LA) did not have a statistically significant return rate this has been plotted here for clarityThe diagonal solid band describes the inverse relationship reproduced by the PCA model over a range of environmental parameters Theoverall simulation rate is set using known parameters of death and recruitment for Zostera marina [51] The other simulation parameterswere set arbitrarily and hence show a qualitative as opposed to quantitative similarity with the data

our knowledge this is the first time a direct comparison has been possible between time-series and spatialsnapshot data on the same natural system The strategy of coupling rigorous modelling developmentwith high-quality long-term field study is a powerful approach for making generalizable inferencebased on biologically well-supported assumptions and observation In particular analysis of where thepredicted relationship breaks down in nature where the demographic parameters between locations aresignificantly different provides useful motivation and insight for further theoretical exploration

Using a PCA model we predict a strong negative linear relationship between the Korcak exponentand the return rate over a wide range of parametersmdashin fact all parameters that generate return ratesabove 005 (figure 2) This reversal of the relationship can be observed when there is no environmentalgradient present (figure 3) While variation in environmental parameters gave a strong Korcakndashreturnrate relationship this was not duplicated when the dynamic (species-specific) parameters were varied(figure 4) Instead a very low correlation relationship was found These results highlight the practicalusefulness and potential shortcomings of this method for discerning the return rate and hence persistenceof a species from its spatial pattern The change in gradient due to high- and low-competition (k) valuesalso gives an indication of how comparisons of the Korcak exponent should be implemented (figure 2) Ifendogenous parameters (k σ1 σ2 μ) are fixed then a monotonic relationship is produced with a gradientthat is dependent on those endogenous parameters This suggests that while in some settings the Korcakexponent does correlate with the return rate of the system and thus its persistence this is not true ingeneral Other studies have recently highlighted similar results that generic indicators of a catastrophicshift may not hold generally across all settings [192352]

Our results indicate a Korcakndashpersistence relationship in a long-term study with an aerialphotographic survey Vegetation density data in the form of a 20-year quadrat survey from the Isles ofScilly UK was used to estimate the return rate for five distinct lsquomeadowsrsquo This was compared withthe Korcak exponent measured from the patch-size distribution obtained via an aerial photographicsurvey conducted towards the end of the study The same negatively correlated Korcakndashpersistencerelationship was found from this data and has qualitative agreement with the simulation study subjectto the limitations of assuming equilibrium dynamics already noted The model is simplistic in natureand may not fully capture the variety of complex interactions occurring in a vegetation system indeeddiffering model assumptions can lead to different conclusions based on spatial indicators [1952] Thecomparison between the data and model then is given to illustrate the general form of the relationshipA model with more realistic assumptions and fitted parameters may better reproduce the observedrelationship therefore This gives a tantalizing glimpse of how high-resolution remote-sensing techniquescould support some more traditional ecological survey techniques when answering questions about thedynamical persistence of an ecosystem As has recently been pointed out these spatial techniques would

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

10

rsosroyalsocietypublishingorgRSocopensci3150519

be system-dependent and further validation against empirical data is required before drawing robustconclusions from spatial snapshots alone [52]

In the event only three out of five sites assessed showed the predicted relationship between spatialand temporal statistics In both cases where the relationship between spatial and temporal dynamicsfell down it was due to being unable to reliably estimate a return rate from time-series analysis Atone site (Little Arthur) coverage by vegetation was very high for most of the time surveyed Althoughpopulation growth rate and density was reasonably described by a linear relationship (figure 5) thispresented too little information about response to perturbation to derive a statistically significant returnrate The other site not following the predicted relationship was Old Grimsby Harbour which is heavilydisturbed by boat traffic and can be seen to be declining precipitously (figure 5) These cases point tolimitations of classic time-series analysis It would require further validation of the Korcak exponentapproach to confidently use alongside time-series analysis

Sugihara [32] proposed that dynamics could be inferred from complexity of shape They illustratedthis point by using a fractional Brownian motion model where the Hurst exponent could be used todetect the persistence of the generating process Other studies [53] have used this relationship to explorehow measures of persistence can relate to dynamics however there has been no strong quantitative testof whether the spatial persistence of a landscape relates to the temporal persistence Here we have testedthe generality of this hypothesis by precisely defining dynamic persistence and then relating this to theshape of the resulting distribution Overall care must be taken when directly comparing spatial statisticsto temporal ones This general conclusion has also been recently highlighted in the context of comparingtruncations in the patch-size distribution to the proximity to a dynamic threshold [2223] Universalityof fractal growth processes leads to many spatial patterns that are similar in the sense that they sharethe same scaling relationship [54] For a fractal measure to be applied in the context of estimating areturn rate we believe that a strong mechanistic understanding of the underlying growth mechanismsis required which has similarly been found in a study of marine diatoms [24] We have focused onmechanisms where growth is locally positively correlated with surrounding vegetation and negativelycorrelated on larger scales However there may also be other spatially correlated processes in a vegetativesystem that lead to changes in the scaling properties of the system such as grazing [222355] or disease[56] It would be interesting to discern the Korcakndashpersistence relationship where such other factorsare present

Data accessibility The Isles of Scilly dataset including the patch sizes and occupancy for the five meadow sites can befound at httpdxdoiorg105061dryadr95s8Authorsrsquo contributions MAI MJK and JCB conceived the study MAI undertook the modelling with support fromMJK and JCB ELJ EJK KJC and JCB undertook the experimental work MAI MJK and JCB wrote themanuscript with suggestions and comments from all authorsCompeting interests The authors declare they have no competing interestsFunding The research in this article was in part funded by The University of Warwickrsquos EPSRC-funded DoctoralTraining Centre for Complexity Science

References1 Moffat AS 1994 Theoretical ecology winning its

spurs in the real world Science 263 1090ndash1092(doi101126science8108725)

2 Bascompte J Soleacute RV 1995 Rethinking complexitymodelling spatio-temporal dynamics in ecologyTrends Ecol Evol 10 361ndash366 (doi101016S0169-5347(00)89134-X)

3 Rietkerk M Van de Koppel J 2008 Regular patternformation in real ecosystems Trends Ecol Evol 23169ndash175 (doi101016jtree200710013)

4 Pascual M Guichard F 2005 Criticality anddisturbance in spatial ecological systems TrendsEcol Evol 20 88ndash95 (doi101016jtree200411012)

5 McIntire EJ Fajardo A 2009 Beyond description theactive and effective way to infer processes fromspatial patterns Ecology 90 46ndash56 (doi10189007-20961)

6 Borcard D Legendre P Avois-Jacquet C Tuomisto H2004 Dissecting the spatial structure of ecologicaldata at multiple scales Ecology 85 1826ndash1832(doi10189003-3111)

7 Jeltsch F Moloney K Milton SJ 1999 Detectingprocess from snapshot pattern lessons from treespacing in the southern Kalahari Oikos 85451ndash466 (doi1023073546695)

8 Silvertown J Wilson JB 1994 Community structurein a desert perennial community Ecology 75409ndash417 (doi1023071939544)

9 Eppinga MB de Ruiter PC Wassen MJ Rietkerk M2009 Nutrients and hydrology indicate the drivingmechanisms of peatland surface patterningAm Nat 173 803ndash818 (doi101086598487)

10 Liu QX Weerman EJ Herman PM Olff H van deKoppel J 2012 Alternative mechanisms alter theemergent properties of self-organization in mussel

beds Proc R Soc B 279 2744ndash2753(doi101098rspb20120157)

11 Liu QX Doelman A Rottschaumlfer V de Jager MHerman PM Rietkerk M van de Koppela J 2013Phase separation explains a new class ofself-organized spatial patterns in ecologicalsystems Proc Natl Acad Sci USA 110 11 905ndash11 910(doi101073pnas1222339110)

12 Dieckmann U Law R 2000 Relaxation projectionsand the method of moments In The geometry ofecological interactions simplifying spatialcomplexity (eds U Dieckmann R Law JAJ Metz)pp 412ndash455 Cambridge UK Cambridge UniversityPress

13 Dennis B Taper ML 1994 Density dependence intime series observations of natural populationsestimation and testing Ecol Monogr 64 205ndash224(doi1023072937041)

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

11

rsosroyalsocietypublishingorgRSocopensci3150519

14 Ives A Dennis B Cottingham K Carpenter S 2003

Estimating community stability and ecologicalinteractions from time-series data Ecol Monogr 73301ndash330 (doi1018900012-9615(2003)073[0301ECSAEI]20CO2)

15 Berryman A Turchin P 2001 Identifying thedensity-dependent structure underlying ecologicaltime series Oikos 92 265ndash270 (doi101034j1600-07062001920208x)

16 Holling CS 1996 Engineering resilience versusecological resilience In Engineering withinecological constraints (ed P Schulze) pp 31ndash44Washington DC National Academy

17 Sibly RM Barker D DenhamMC Hone J Pagel M2005 On the regulation of populations of mammalsbirds fish and insects Science 309 607ndash610(doi101126science1110760)

18 Legendre P Fortin MJ 1989 Spatial pattern andecological analysis Vegetatio 80 107ndash138(doi101007BF00048036)

19 Dakos V Keacutefi S Rietkerk M Van Nes EH Scheffer M2011 Slowing down in spatially patternedecosystems at the brink of collapse Am Nat 177E153ndashE166 (doi101086659945)

20 Mandelbrot BB 1983 The fractal geometry of natureNew York NY Macmillan

21 Scanlon TM Caylor KK Levin SA Rodriguez-Iturbe I2007 Positive feedbacks promote power-lawclustering of Kalahari vegetation Nature 449209ndash212 (doi101038nature06060)

22 Keacutefi S Rietkerk M Alados CL Pueyo Y PapanastasisVP ElAich A de Ruiter PC 2007 Spatial vegetationpatterns and imminent desertification inMediterranean arid ecosystems Nature 449213ndash217 (doi101038nature06111)

23 Maestre FT Escudero A 2009 Is the patch sizedistribution of vegetation a suitable indicator ofdesertification processes Ecology 90 1729ndash1735(doi10189008-20961)

24 Weerman E Van Belzen J Rietkerk M TemmermanS Keacutefi S Herman P Van de Koppel J 2012 Changesin diatom patch-size distribution and degradationin a spatially self-organized intertidal mudflatecosystem Ecology 93 608ndash618(doi10189011-06251)

25 Hastings HM Sugihara G 1993 Fractals a userrsquosguide for the natural sciences Oxford UK OxfordUniversity Press

26 Pascual M Roy M Guichard F Flierl G 2002 Clustersize distributions signatures of selfndashorganization inspatial ecologies Phil Trans R Soc Lond B 357657ndash666 (doi101098rstb20010983)

27 Vicsek T Family F 1984 Dynamic scaling foraggregation of clusters Phys Rev Lett 52 1669(doi101103PhysRevLett521669)

28 Irvine M Bull J Keeling M 2015 Aggregationdynamics explain vegetation patch-size

distributions Theor Popul Biol 108 70ndash74(doi101016jtpb201512001)

29 Xin Xp Gao Q Li Yy Yang Z 1999 Fractal analysis ofgrass patches under grazing and flood disturbancein an Alkaline grassland [J] Acta Bot Sin 41307ndash313

30 Imre AR Cseh D Neteler M Rocchini D 2011 Korcakdimension as a novel indicator of landscapefragmentation and re-forestation Ecol Indicators11 1134ndash1138 (doi101016jecolind201012013)

31 Erlandsson J McQuaid CD Skoumlld M 2011 Patchinessand co-existence of indigenous and invasivemussels at small spatial scales the interactionof facilitation and competition PLoS ONE 6e26958 (doi101371journalpone0026958)

32 Sugihara G May R 1990 Applications of fractals inecology Trends Ecol Evol 5 79ndash86(doi1010160169-5347(90)90235-6)

33 Imre AR Novotny J Rocchini D 2012 TheKorcak-exponent a non-fractal descriptor forlandscape patchiness Ecol Complexity 12 70ndash74(doi101016jecocom201210001)

34 Bull JC Kenyon EJ Cook KJ 2012 Wasting diseaseregulates long-term population dynamics in athreatened seagrass Oecologia 169 135ndash142(doi101007s00442-011-2187-6)

35 Jackson EL Higgs S Allsop T Cathray A Evans JLangmead O 2011 Isles of Scilly seagrass mappingNatural England NECR087

36 Orth RJ Moore KA 1988 Distribution of Zosteramarina L and Ruppia maritima L sensu lato alongdepth gradients in the lower Chesapeake Bay USAAquat Bot 32 291ndash305 (doi1010160304-3770(88)90122-2)

37 Krause-Jensen D Pedersen MF Jensen C 2003Regulation of eelgrass (Zostera marina) cover alongdepth gradients in Danish coastal waters Estuaries26 866ndash877 (doi101007BF02803345)

38 Balzter H Braun PW Koumlhler W 1998 Cellularautomata models for vegetation dynamics EcolModel 107 113ndash125 (doi101016S0304-3800(97)00202-0)

39 Hogeweg P 1988 Cellular automata as aparadigm for ecological modeling Appl MathComput27 81ndash100 (doi1010160096-3003(88)90100-2)

40 Lefever R Lejeune O 1997 On the origin of tigerbush Bull Math Biol 59 263ndash294 (doi101007BF02462004)

41 Clauset A Shalizi CR Newman ME 2009 Power-lawdistributions in empirical data SIAM Rev 51661ndash703 (doi101137070710111)

42 Lobelle D Kenyon EJ Cook KJ Bull JC 2013 Localcompetition and metapopulation processes drive

long-term seagrass-epiphyte population dynamicsPLoS ONE 8 e57072 (doi101371journalpone0057072)

43 Potouroglou M Kenyon EJ Gall A Cook KJ Bull JC2014 The roles of flowering overwinter survival andsea surface temperature in the long-termpopulation dynamics of Zostera marina around theIsles of Scilly UKMar Pollut Bull 83 500ndash507(doi101016jmarpolbul201403035)

44 Levins R 1969 Some demographic and geneticconsequences of environmental heterogeneity forbiological control Bull Entomol Soc Am 15237ndash240 (doi101093besa153237)

45 Royama T 1992 Analytical population dynamicsvol 10 Berlin Germany Springer Science ampBusiness Media

46 Bjoslashrnstad ON Begon M Stenseth NC Falck W SaitSM Thompson DJ 1998 Population dynamics of theIndian meal moth demographic stochasticity anddelayed regulatory mechanisms J Anim Ecol 67110ndash126 (doi101046j1365-2656199800168x)

47 Wood S 2006 Generalized additive models anintroduction with R Boca Raton FL CRC Press

48 Sibly RM Barker D Hone J Pagel M 2007 On thestability of populations of mammals birds fish andinsects Ecol Lett 10 970ndash976(doi101111j1461-0248200701092x)

49 Keacutefi S Rietkerk M Roy M Franc A De Ruiter PCPascual M 2011 Robust scaling in ecosystems andthe meltdown of patch size distributions beforeextinction Ecol Lett 14 29ndash35 (doi101111j1461-0248201001553x)

50 Efron B 1981 Nonparametric estimates of standarderror the jackknife the bootstrap and othermethods Biometrika 68 589ndash599(doi101093biomet683589)

51 Larkum AW Orth RJ Duarte C 2006 Seagrassesbiology ecology and conservation Berlin GermanySpringer

52 Keacutefi S et al 2014 Early warning signals of ecologicaltransitions methods for spatial patterns PLoS ONE9 e92097 (doi101371journalpone0092097)

53 Cunha A Santos R Gaspar A Bairros M 2005Seagrass landscape-scale changes in response todisturbance created by the dynamics ofbarrier-islands a case study from Ria Formosa(Southern Portugal) Estuar Coast Shelf Sci 64636ndash644 (doi101016jecss200503018)

54 Bunde A Havlin S 1991 Fractals and disorderedsystems New York NY Springer

55 Adler P Raff D Lauenroth W 2001 The effect ofgrazing on the spatial heterogeneity of vegetationOecologia 128 465ndash479 (doi101007s004420100737)

56 Packer A Clay K 2000 Soil pathogens and spatialpatterns of seedling mortality in a temperate treeNature 404 278ndash281 (doi10103835005072)

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

  • Introduction
  • Lattice-based simulation with environmental gradient
    • Model development
    • Model analysis
      • Field survey and aerial photography of seagrass meadows
        • Seagrass meadow locations
        • Survey protocol
        • Statistical modelling
          • Results
            • Simulations
            • Seagrass data analysis
              • Discussion
              • References
Page 10: Fractal measures of spatial pattern as a heuristic for ...sro.sussex.ac.uk/id/eprint/60356/1/150519.full.pdf · fractal measures and persistence exists. We combine theoretical arguments

9

rsosroyalsocietypublishingorgRSocopensci3150519

return rate05 06 07 08 09 10 11 12 13

Kor

cak

expo

nent

15

16

17

18

19

20

21

BLT

HTB

LA

WBL

95 CI85 CI

Figure 6 Korcak return rate relationship for surveyed vegetation Empirical seagrass data for three sites surveyed is shown as labelledpoints withplusmnse error bars for both return rate and Korcak exponent where the Korcak exponent errors were found through bootstrapre-sampling [50] Although Little Arthur (LA) did not have a statistically significant return rate this has been plotted here for clarityThe diagonal solid band describes the inverse relationship reproduced by the PCA model over a range of environmental parameters Theoverall simulation rate is set using known parameters of death and recruitment for Zostera marina [51] The other simulation parameterswere set arbitrarily and hence show a qualitative as opposed to quantitative similarity with the data

our knowledge this is the first time a direct comparison has been possible between time-series and spatialsnapshot data on the same natural system The strategy of coupling rigorous modelling developmentwith high-quality long-term field study is a powerful approach for making generalizable inferencebased on biologically well-supported assumptions and observation In particular analysis of where thepredicted relationship breaks down in nature where the demographic parameters between locations aresignificantly different provides useful motivation and insight for further theoretical exploration

Using a PCA model we predict a strong negative linear relationship between the Korcak exponentand the return rate over a wide range of parametersmdashin fact all parameters that generate return ratesabove 005 (figure 2) This reversal of the relationship can be observed when there is no environmentalgradient present (figure 3) While variation in environmental parameters gave a strong Korcakndashreturnrate relationship this was not duplicated when the dynamic (species-specific) parameters were varied(figure 4) Instead a very low correlation relationship was found These results highlight the practicalusefulness and potential shortcomings of this method for discerning the return rate and hence persistenceof a species from its spatial pattern The change in gradient due to high- and low-competition (k) valuesalso gives an indication of how comparisons of the Korcak exponent should be implemented (figure 2) Ifendogenous parameters (k σ1 σ2 μ) are fixed then a monotonic relationship is produced with a gradientthat is dependent on those endogenous parameters This suggests that while in some settings the Korcakexponent does correlate with the return rate of the system and thus its persistence this is not true ingeneral Other studies have recently highlighted similar results that generic indicators of a catastrophicshift may not hold generally across all settings [192352]

Our results indicate a Korcakndashpersistence relationship in a long-term study with an aerialphotographic survey Vegetation density data in the form of a 20-year quadrat survey from the Isles ofScilly UK was used to estimate the return rate for five distinct lsquomeadowsrsquo This was compared withthe Korcak exponent measured from the patch-size distribution obtained via an aerial photographicsurvey conducted towards the end of the study The same negatively correlated Korcakndashpersistencerelationship was found from this data and has qualitative agreement with the simulation study subjectto the limitations of assuming equilibrium dynamics already noted The model is simplistic in natureand may not fully capture the variety of complex interactions occurring in a vegetation system indeeddiffering model assumptions can lead to different conclusions based on spatial indicators [1952] Thecomparison between the data and model then is given to illustrate the general form of the relationshipA model with more realistic assumptions and fitted parameters may better reproduce the observedrelationship therefore This gives a tantalizing glimpse of how high-resolution remote-sensing techniquescould support some more traditional ecological survey techniques when answering questions about thedynamical persistence of an ecosystem As has recently been pointed out these spatial techniques would

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

10

rsosroyalsocietypublishingorgRSocopensci3150519

be system-dependent and further validation against empirical data is required before drawing robustconclusions from spatial snapshots alone [52]

In the event only three out of five sites assessed showed the predicted relationship between spatialand temporal statistics In both cases where the relationship between spatial and temporal dynamicsfell down it was due to being unable to reliably estimate a return rate from time-series analysis Atone site (Little Arthur) coverage by vegetation was very high for most of the time surveyed Althoughpopulation growth rate and density was reasonably described by a linear relationship (figure 5) thispresented too little information about response to perturbation to derive a statistically significant returnrate The other site not following the predicted relationship was Old Grimsby Harbour which is heavilydisturbed by boat traffic and can be seen to be declining precipitously (figure 5) These cases point tolimitations of classic time-series analysis It would require further validation of the Korcak exponentapproach to confidently use alongside time-series analysis

Sugihara [32] proposed that dynamics could be inferred from complexity of shape They illustratedthis point by using a fractional Brownian motion model where the Hurst exponent could be used todetect the persistence of the generating process Other studies [53] have used this relationship to explorehow measures of persistence can relate to dynamics however there has been no strong quantitative testof whether the spatial persistence of a landscape relates to the temporal persistence Here we have testedthe generality of this hypothesis by precisely defining dynamic persistence and then relating this to theshape of the resulting distribution Overall care must be taken when directly comparing spatial statisticsto temporal ones This general conclusion has also been recently highlighted in the context of comparingtruncations in the patch-size distribution to the proximity to a dynamic threshold [2223] Universalityof fractal growth processes leads to many spatial patterns that are similar in the sense that they sharethe same scaling relationship [54] For a fractal measure to be applied in the context of estimating areturn rate we believe that a strong mechanistic understanding of the underlying growth mechanismsis required which has similarly been found in a study of marine diatoms [24] We have focused onmechanisms where growth is locally positively correlated with surrounding vegetation and negativelycorrelated on larger scales However there may also be other spatially correlated processes in a vegetativesystem that lead to changes in the scaling properties of the system such as grazing [222355] or disease[56] It would be interesting to discern the Korcakndashpersistence relationship where such other factorsare present

Data accessibility The Isles of Scilly dataset including the patch sizes and occupancy for the five meadow sites can befound at httpdxdoiorg105061dryadr95s8Authorsrsquo contributions MAI MJK and JCB conceived the study MAI undertook the modelling with support fromMJK and JCB ELJ EJK KJC and JCB undertook the experimental work MAI MJK and JCB wrote themanuscript with suggestions and comments from all authorsCompeting interests The authors declare they have no competing interestsFunding The research in this article was in part funded by The University of Warwickrsquos EPSRC-funded DoctoralTraining Centre for Complexity Science

References1 Moffat AS 1994 Theoretical ecology winning its

spurs in the real world Science 263 1090ndash1092(doi101126science8108725)

2 Bascompte J Soleacute RV 1995 Rethinking complexitymodelling spatio-temporal dynamics in ecologyTrends Ecol Evol 10 361ndash366 (doi101016S0169-5347(00)89134-X)

3 Rietkerk M Van de Koppel J 2008 Regular patternformation in real ecosystems Trends Ecol Evol 23169ndash175 (doi101016jtree200710013)

4 Pascual M Guichard F 2005 Criticality anddisturbance in spatial ecological systems TrendsEcol Evol 20 88ndash95 (doi101016jtree200411012)

5 McIntire EJ Fajardo A 2009 Beyond description theactive and effective way to infer processes fromspatial patterns Ecology 90 46ndash56 (doi10189007-20961)

6 Borcard D Legendre P Avois-Jacquet C Tuomisto H2004 Dissecting the spatial structure of ecologicaldata at multiple scales Ecology 85 1826ndash1832(doi10189003-3111)

7 Jeltsch F Moloney K Milton SJ 1999 Detectingprocess from snapshot pattern lessons from treespacing in the southern Kalahari Oikos 85451ndash466 (doi1023073546695)

8 Silvertown J Wilson JB 1994 Community structurein a desert perennial community Ecology 75409ndash417 (doi1023071939544)

9 Eppinga MB de Ruiter PC Wassen MJ Rietkerk M2009 Nutrients and hydrology indicate the drivingmechanisms of peatland surface patterningAm Nat 173 803ndash818 (doi101086598487)

10 Liu QX Weerman EJ Herman PM Olff H van deKoppel J 2012 Alternative mechanisms alter theemergent properties of self-organization in mussel

beds Proc R Soc B 279 2744ndash2753(doi101098rspb20120157)

11 Liu QX Doelman A Rottschaumlfer V de Jager MHerman PM Rietkerk M van de Koppela J 2013Phase separation explains a new class ofself-organized spatial patterns in ecologicalsystems Proc Natl Acad Sci USA 110 11 905ndash11 910(doi101073pnas1222339110)

12 Dieckmann U Law R 2000 Relaxation projectionsand the method of moments In The geometry ofecological interactions simplifying spatialcomplexity (eds U Dieckmann R Law JAJ Metz)pp 412ndash455 Cambridge UK Cambridge UniversityPress

13 Dennis B Taper ML 1994 Density dependence intime series observations of natural populationsestimation and testing Ecol Monogr 64 205ndash224(doi1023072937041)

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

11

rsosroyalsocietypublishingorgRSocopensci3150519

14 Ives A Dennis B Cottingham K Carpenter S 2003

Estimating community stability and ecologicalinteractions from time-series data Ecol Monogr 73301ndash330 (doi1018900012-9615(2003)073[0301ECSAEI]20CO2)

15 Berryman A Turchin P 2001 Identifying thedensity-dependent structure underlying ecologicaltime series Oikos 92 265ndash270 (doi101034j1600-07062001920208x)

16 Holling CS 1996 Engineering resilience versusecological resilience In Engineering withinecological constraints (ed P Schulze) pp 31ndash44Washington DC National Academy

17 Sibly RM Barker D DenhamMC Hone J Pagel M2005 On the regulation of populations of mammalsbirds fish and insects Science 309 607ndash610(doi101126science1110760)

18 Legendre P Fortin MJ 1989 Spatial pattern andecological analysis Vegetatio 80 107ndash138(doi101007BF00048036)

19 Dakos V Keacutefi S Rietkerk M Van Nes EH Scheffer M2011 Slowing down in spatially patternedecosystems at the brink of collapse Am Nat 177E153ndashE166 (doi101086659945)

20 Mandelbrot BB 1983 The fractal geometry of natureNew York NY Macmillan

21 Scanlon TM Caylor KK Levin SA Rodriguez-Iturbe I2007 Positive feedbacks promote power-lawclustering of Kalahari vegetation Nature 449209ndash212 (doi101038nature06060)

22 Keacutefi S Rietkerk M Alados CL Pueyo Y PapanastasisVP ElAich A de Ruiter PC 2007 Spatial vegetationpatterns and imminent desertification inMediterranean arid ecosystems Nature 449213ndash217 (doi101038nature06111)

23 Maestre FT Escudero A 2009 Is the patch sizedistribution of vegetation a suitable indicator ofdesertification processes Ecology 90 1729ndash1735(doi10189008-20961)

24 Weerman E Van Belzen J Rietkerk M TemmermanS Keacutefi S Herman P Van de Koppel J 2012 Changesin diatom patch-size distribution and degradationin a spatially self-organized intertidal mudflatecosystem Ecology 93 608ndash618(doi10189011-06251)

25 Hastings HM Sugihara G 1993 Fractals a userrsquosguide for the natural sciences Oxford UK OxfordUniversity Press

26 Pascual M Roy M Guichard F Flierl G 2002 Clustersize distributions signatures of selfndashorganization inspatial ecologies Phil Trans R Soc Lond B 357657ndash666 (doi101098rstb20010983)

27 Vicsek T Family F 1984 Dynamic scaling foraggregation of clusters Phys Rev Lett 52 1669(doi101103PhysRevLett521669)

28 Irvine M Bull J Keeling M 2015 Aggregationdynamics explain vegetation patch-size

distributions Theor Popul Biol 108 70ndash74(doi101016jtpb201512001)

29 Xin Xp Gao Q Li Yy Yang Z 1999 Fractal analysis ofgrass patches under grazing and flood disturbancein an Alkaline grassland [J] Acta Bot Sin 41307ndash313

30 Imre AR Cseh D Neteler M Rocchini D 2011 Korcakdimension as a novel indicator of landscapefragmentation and re-forestation Ecol Indicators11 1134ndash1138 (doi101016jecolind201012013)

31 Erlandsson J McQuaid CD Skoumlld M 2011 Patchinessand co-existence of indigenous and invasivemussels at small spatial scales the interactionof facilitation and competition PLoS ONE 6e26958 (doi101371journalpone0026958)

32 Sugihara G May R 1990 Applications of fractals inecology Trends Ecol Evol 5 79ndash86(doi1010160169-5347(90)90235-6)

33 Imre AR Novotny J Rocchini D 2012 TheKorcak-exponent a non-fractal descriptor forlandscape patchiness Ecol Complexity 12 70ndash74(doi101016jecocom201210001)

34 Bull JC Kenyon EJ Cook KJ 2012 Wasting diseaseregulates long-term population dynamics in athreatened seagrass Oecologia 169 135ndash142(doi101007s00442-011-2187-6)

35 Jackson EL Higgs S Allsop T Cathray A Evans JLangmead O 2011 Isles of Scilly seagrass mappingNatural England NECR087

36 Orth RJ Moore KA 1988 Distribution of Zosteramarina L and Ruppia maritima L sensu lato alongdepth gradients in the lower Chesapeake Bay USAAquat Bot 32 291ndash305 (doi1010160304-3770(88)90122-2)

37 Krause-Jensen D Pedersen MF Jensen C 2003Regulation of eelgrass (Zostera marina) cover alongdepth gradients in Danish coastal waters Estuaries26 866ndash877 (doi101007BF02803345)

38 Balzter H Braun PW Koumlhler W 1998 Cellularautomata models for vegetation dynamics EcolModel 107 113ndash125 (doi101016S0304-3800(97)00202-0)

39 Hogeweg P 1988 Cellular automata as aparadigm for ecological modeling Appl MathComput27 81ndash100 (doi1010160096-3003(88)90100-2)

40 Lefever R Lejeune O 1997 On the origin of tigerbush Bull Math Biol 59 263ndash294 (doi101007BF02462004)

41 Clauset A Shalizi CR Newman ME 2009 Power-lawdistributions in empirical data SIAM Rev 51661ndash703 (doi101137070710111)

42 Lobelle D Kenyon EJ Cook KJ Bull JC 2013 Localcompetition and metapopulation processes drive

long-term seagrass-epiphyte population dynamicsPLoS ONE 8 e57072 (doi101371journalpone0057072)

43 Potouroglou M Kenyon EJ Gall A Cook KJ Bull JC2014 The roles of flowering overwinter survival andsea surface temperature in the long-termpopulation dynamics of Zostera marina around theIsles of Scilly UKMar Pollut Bull 83 500ndash507(doi101016jmarpolbul201403035)

44 Levins R 1969 Some demographic and geneticconsequences of environmental heterogeneity forbiological control Bull Entomol Soc Am 15237ndash240 (doi101093besa153237)

45 Royama T 1992 Analytical population dynamicsvol 10 Berlin Germany Springer Science ampBusiness Media

46 Bjoslashrnstad ON Begon M Stenseth NC Falck W SaitSM Thompson DJ 1998 Population dynamics of theIndian meal moth demographic stochasticity anddelayed regulatory mechanisms J Anim Ecol 67110ndash126 (doi101046j1365-2656199800168x)

47 Wood S 2006 Generalized additive models anintroduction with R Boca Raton FL CRC Press

48 Sibly RM Barker D Hone J Pagel M 2007 On thestability of populations of mammals birds fish andinsects Ecol Lett 10 970ndash976(doi101111j1461-0248200701092x)

49 Keacutefi S Rietkerk M Roy M Franc A De Ruiter PCPascual M 2011 Robust scaling in ecosystems andthe meltdown of patch size distributions beforeextinction Ecol Lett 14 29ndash35 (doi101111j1461-0248201001553x)

50 Efron B 1981 Nonparametric estimates of standarderror the jackknife the bootstrap and othermethods Biometrika 68 589ndash599(doi101093biomet683589)

51 Larkum AW Orth RJ Duarte C 2006 Seagrassesbiology ecology and conservation Berlin GermanySpringer

52 Keacutefi S et al 2014 Early warning signals of ecologicaltransitions methods for spatial patterns PLoS ONE9 e92097 (doi101371journalpone0092097)

53 Cunha A Santos R Gaspar A Bairros M 2005Seagrass landscape-scale changes in response todisturbance created by the dynamics ofbarrier-islands a case study from Ria Formosa(Southern Portugal) Estuar Coast Shelf Sci 64636ndash644 (doi101016jecss200503018)

54 Bunde A Havlin S 1991 Fractals and disorderedsystems New York NY Springer

55 Adler P Raff D Lauenroth W 2001 The effect ofgrazing on the spatial heterogeneity of vegetationOecologia 128 465ndash479 (doi101007s004420100737)

56 Packer A Clay K 2000 Soil pathogens and spatialpatterns of seedling mortality in a temperate treeNature 404 278ndash281 (doi10103835005072)

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

  • Introduction
  • Lattice-based simulation with environmental gradient
    • Model development
    • Model analysis
      • Field survey and aerial photography of seagrass meadows
        • Seagrass meadow locations
        • Survey protocol
        • Statistical modelling
          • Results
            • Simulations
            • Seagrass data analysis
              • Discussion
              • References
Page 11: Fractal measures of spatial pattern as a heuristic for ...sro.sussex.ac.uk/id/eprint/60356/1/150519.full.pdf · fractal measures and persistence exists. We combine theoretical arguments

10

rsosroyalsocietypublishingorgRSocopensci3150519

be system-dependent and further validation against empirical data is required before drawing robustconclusions from spatial snapshots alone [52]

In the event only three out of five sites assessed showed the predicted relationship between spatialand temporal statistics In both cases where the relationship between spatial and temporal dynamicsfell down it was due to being unable to reliably estimate a return rate from time-series analysis Atone site (Little Arthur) coverage by vegetation was very high for most of the time surveyed Althoughpopulation growth rate and density was reasonably described by a linear relationship (figure 5) thispresented too little information about response to perturbation to derive a statistically significant returnrate The other site not following the predicted relationship was Old Grimsby Harbour which is heavilydisturbed by boat traffic and can be seen to be declining precipitously (figure 5) These cases point tolimitations of classic time-series analysis It would require further validation of the Korcak exponentapproach to confidently use alongside time-series analysis

Sugihara [32] proposed that dynamics could be inferred from complexity of shape They illustratedthis point by using a fractional Brownian motion model where the Hurst exponent could be used todetect the persistence of the generating process Other studies [53] have used this relationship to explorehow measures of persistence can relate to dynamics however there has been no strong quantitative testof whether the spatial persistence of a landscape relates to the temporal persistence Here we have testedthe generality of this hypothesis by precisely defining dynamic persistence and then relating this to theshape of the resulting distribution Overall care must be taken when directly comparing spatial statisticsto temporal ones This general conclusion has also been recently highlighted in the context of comparingtruncations in the patch-size distribution to the proximity to a dynamic threshold [2223] Universalityof fractal growth processes leads to many spatial patterns that are similar in the sense that they sharethe same scaling relationship [54] For a fractal measure to be applied in the context of estimating areturn rate we believe that a strong mechanistic understanding of the underlying growth mechanismsis required which has similarly been found in a study of marine diatoms [24] We have focused onmechanisms where growth is locally positively correlated with surrounding vegetation and negativelycorrelated on larger scales However there may also be other spatially correlated processes in a vegetativesystem that lead to changes in the scaling properties of the system such as grazing [222355] or disease[56] It would be interesting to discern the Korcakndashpersistence relationship where such other factorsare present

Data accessibility The Isles of Scilly dataset including the patch sizes and occupancy for the five meadow sites can befound at httpdxdoiorg105061dryadr95s8Authorsrsquo contributions MAI MJK and JCB conceived the study MAI undertook the modelling with support fromMJK and JCB ELJ EJK KJC and JCB undertook the experimental work MAI MJK and JCB wrote themanuscript with suggestions and comments from all authorsCompeting interests The authors declare they have no competing interestsFunding The research in this article was in part funded by The University of Warwickrsquos EPSRC-funded DoctoralTraining Centre for Complexity Science

References1 Moffat AS 1994 Theoretical ecology winning its

spurs in the real world Science 263 1090ndash1092(doi101126science8108725)

2 Bascompte J Soleacute RV 1995 Rethinking complexitymodelling spatio-temporal dynamics in ecologyTrends Ecol Evol 10 361ndash366 (doi101016S0169-5347(00)89134-X)

3 Rietkerk M Van de Koppel J 2008 Regular patternformation in real ecosystems Trends Ecol Evol 23169ndash175 (doi101016jtree200710013)

4 Pascual M Guichard F 2005 Criticality anddisturbance in spatial ecological systems TrendsEcol Evol 20 88ndash95 (doi101016jtree200411012)

5 McIntire EJ Fajardo A 2009 Beyond description theactive and effective way to infer processes fromspatial patterns Ecology 90 46ndash56 (doi10189007-20961)

6 Borcard D Legendre P Avois-Jacquet C Tuomisto H2004 Dissecting the spatial structure of ecologicaldata at multiple scales Ecology 85 1826ndash1832(doi10189003-3111)

7 Jeltsch F Moloney K Milton SJ 1999 Detectingprocess from snapshot pattern lessons from treespacing in the southern Kalahari Oikos 85451ndash466 (doi1023073546695)

8 Silvertown J Wilson JB 1994 Community structurein a desert perennial community Ecology 75409ndash417 (doi1023071939544)

9 Eppinga MB de Ruiter PC Wassen MJ Rietkerk M2009 Nutrients and hydrology indicate the drivingmechanisms of peatland surface patterningAm Nat 173 803ndash818 (doi101086598487)

10 Liu QX Weerman EJ Herman PM Olff H van deKoppel J 2012 Alternative mechanisms alter theemergent properties of self-organization in mussel

beds Proc R Soc B 279 2744ndash2753(doi101098rspb20120157)

11 Liu QX Doelman A Rottschaumlfer V de Jager MHerman PM Rietkerk M van de Koppela J 2013Phase separation explains a new class ofself-organized spatial patterns in ecologicalsystems Proc Natl Acad Sci USA 110 11 905ndash11 910(doi101073pnas1222339110)

12 Dieckmann U Law R 2000 Relaxation projectionsand the method of moments In The geometry ofecological interactions simplifying spatialcomplexity (eds U Dieckmann R Law JAJ Metz)pp 412ndash455 Cambridge UK Cambridge UniversityPress

13 Dennis B Taper ML 1994 Density dependence intime series observations of natural populationsestimation and testing Ecol Monogr 64 205ndash224(doi1023072937041)

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

11

rsosroyalsocietypublishingorgRSocopensci3150519

14 Ives A Dennis B Cottingham K Carpenter S 2003

Estimating community stability and ecologicalinteractions from time-series data Ecol Monogr 73301ndash330 (doi1018900012-9615(2003)073[0301ECSAEI]20CO2)

15 Berryman A Turchin P 2001 Identifying thedensity-dependent structure underlying ecologicaltime series Oikos 92 265ndash270 (doi101034j1600-07062001920208x)

16 Holling CS 1996 Engineering resilience versusecological resilience In Engineering withinecological constraints (ed P Schulze) pp 31ndash44Washington DC National Academy

17 Sibly RM Barker D DenhamMC Hone J Pagel M2005 On the regulation of populations of mammalsbirds fish and insects Science 309 607ndash610(doi101126science1110760)

18 Legendre P Fortin MJ 1989 Spatial pattern andecological analysis Vegetatio 80 107ndash138(doi101007BF00048036)

19 Dakos V Keacutefi S Rietkerk M Van Nes EH Scheffer M2011 Slowing down in spatially patternedecosystems at the brink of collapse Am Nat 177E153ndashE166 (doi101086659945)

20 Mandelbrot BB 1983 The fractal geometry of natureNew York NY Macmillan

21 Scanlon TM Caylor KK Levin SA Rodriguez-Iturbe I2007 Positive feedbacks promote power-lawclustering of Kalahari vegetation Nature 449209ndash212 (doi101038nature06060)

22 Keacutefi S Rietkerk M Alados CL Pueyo Y PapanastasisVP ElAich A de Ruiter PC 2007 Spatial vegetationpatterns and imminent desertification inMediterranean arid ecosystems Nature 449213ndash217 (doi101038nature06111)

23 Maestre FT Escudero A 2009 Is the patch sizedistribution of vegetation a suitable indicator ofdesertification processes Ecology 90 1729ndash1735(doi10189008-20961)

24 Weerman E Van Belzen J Rietkerk M TemmermanS Keacutefi S Herman P Van de Koppel J 2012 Changesin diatom patch-size distribution and degradationin a spatially self-organized intertidal mudflatecosystem Ecology 93 608ndash618(doi10189011-06251)

25 Hastings HM Sugihara G 1993 Fractals a userrsquosguide for the natural sciences Oxford UK OxfordUniversity Press

26 Pascual M Roy M Guichard F Flierl G 2002 Clustersize distributions signatures of selfndashorganization inspatial ecologies Phil Trans R Soc Lond B 357657ndash666 (doi101098rstb20010983)

27 Vicsek T Family F 1984 Dynamic scaling foraggregation of clusters Phys Rev Lett 52 1669(doi101103PhysRevLett521669)

28 Irvine M Bull J Keeling M 2015 Aggregationdynamics explain vegetation patch-size

distributions Theor Popul Biol 108 70ndash74(doi101016jtpb201512001)

29 Xin Xp Gao Q Li Yy Yang Z 1999 Fractal analysis ofgrass patches under grazing and flood disturbancein an Alkaline grassland [J] Acta Bot Sin 41307ndash313

30 Imre AR Cseh D Neteler M Rocchini D 2011 Korcakdimension as a novel indicator of landscapefragmentation and re-forestation Ecol Indicators11 1134ndash1138 (doi101016jecolind201012013)

31 Erlandsson J McQuaid CD Skoumlld M 2011 Patchinessand co-existence of indigenous and invasivemussels at small spatial scales the interactionof facilitation and competition PLoS ONE 6e26958 (doi101371journalpone0026958)

32 Sugihara G May R 1990 Applications of fractals inecology Trends Ecol Evol 5 79ndash86(doi1010160169-5347(90)90235-6)

33 Imre AR Novotny J Rocchini D 2012 TheKorcak-exponent a non-fractal descriptor forlandscape patchiness Ecol Complexity 12 70ndash74(doi101016jecocom201210001)

34 Bull JC Kenyon EJ Cook KJ 2012 Wasting diseaseregulates long-term population dynamics in athreatened seagrass Oecologia 169 135ndash142(doi101007s00442-011-2187-6)

35 Jackson EL Higgs S Allsop T Cathray A Evans JLangmead O 2011 Isles of Scilly seagrass mappingNatural England NECR087

36 Orth RJ Moore KA 1988 Distribution of Zosteramarina L and Ruppia maritima L sensu lato alongdepth gradients in the lower Chesapeake Bay USAAquat Bot 32 291ndash305 (doi1010160304-3770(88)90122-2)

37 Krause-Jensen D Pedersen MF Jensen C 2003Regulation of eelgrass (Zostera marina) cover alongdepth gradients in Danish coastal waters Estuaries26 866ndash877 (doi101007BF02803345)

38 Balzter H Braun PW Koumlhler W 1998 Cellularautomata models for vegetation dynamics EcolModel 107 113ndash125 (doi101016S0304-3800(97)00202-0)

39 Hogeweg P 1988 Cellular automata as aparadigm for ecological modeling Appl MathComput27 81ndash100 (doi1010160096-3003(88)90100-2)

40 Lefever R Lejeune O 1997 On the origin of tigerbush Bull Math Biol 59 263ndash294 (doi101007BF02462004)

41 Clauset A Shalizi CR Newman ME 2009 Power-lawdistributions in empirical data SIAM Rev 51661ndash703 (doi101137070710111)

42 Lobelle D Kenyon EJ Cook KJ Bull JC 2013 Localcompetition and metapopulation processes drive

long-term seagrass-epiphyte population dynamicsPLoS ONE 8 e57072 (doi101371journalpone0057072)

43 Potouroglou M Kenyon EJ Gall A Cook KJ Bull JC2014 The roles of flowering overwinter survival andsea surface temperature in the long-termpopulation dynamics of Zostera marina around theIsles of Scilly UKMar Pollut Bull 83 500ndash507(doi101016jmarpolbul201403035)

44 Levins R 1969 Some demographic and geneticconsequences of environmental heterogeneity forbiological control Bull Entomol Soc Am 15237ndash240 (doi101093besa153237)

45 Royama T 1992 Analytical population dynamicsvol 10 Berlin Germany Springer Science ampBusiness Media

46 Bjoslashrnstad ON Begon M Stenseth NC Falck W SaitSM Thompson DJ 1998 Population dynamics of theIndian meal moth demographic stochasticity anddelayed regulatory mechanisms J Anim Ecol 67110ndash126 (doi101046j1365-2656199800168x)

47 Wood S 2006 Generalized additive models anintroduction with R Boca Raton FL CRC Press

48 Sibly RM Barker D Hone J Pagel M 2007 On thestability of populations of mammals birds fish andinsects Ecol Lett 10 970ndash976(doi101111j1461-0248200701092x)

49 Keacutefi S Rietkerk M Roy M Franc A De Ruiter PCPascual M 2011 Robust scaling in ecosystems andthe meltdown of patch size distributions beforeextinction Ecol Lett 14 29ndash35 (doi101111j1461-0248201001553x)

50 Efron B 1981 Nonparametric estimates of standarderror the jackknife the bootstrap and othermethods Biometrika 68 589ndash599(doi101093biomet683589)

51 Larkum AW Orth RJ Duarte C 2006 Seagrassesbiology ecology and conservation Berlin GermanySpringer

52 Keacutefi S et al 2014 Early warning signals of ecologicaltransitions methods for spatial patterns PLoS ONE9 e92097 (doi101371journalpone0092097)

53 Cunha A Santos R Gaspar A Bairros M 2005Seagrass landscape-scale changes in response todisturbance created by the dynamics ofbarrier-islands a case study from Ria Formosa(Southern Portugal) Estuar Coast Shelf Sci 64636ndash644 (doi101016jecss200503018)

54 Bunde A Havlin S 1991 Fractals and disorderedsystems New York NY Springer

55 Adler P Raff D Lauenroth W 2001 The effect ofgrazing on the spatial heterogeneity of vegetationOecologia 128 465ndash479 (doi101007s004420100737)

56 Packer A Clay K 2000 Soil pathogens and spatialpatterns of seedling mortality in a temperate treeNature 404 278ndash281 (doi10103835005072)

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

  • Introduction
  • Lattice-based simulation with environmental gradient
    • Model development
    • Model analysis
      • Field survey and aerial photography of seagrass meadows
        • Seagrass meadow locations
        • Survey protocol
        • Statistical modelling
          • Results
            • Simulations
            • Seagrass data analysis
              • Discussion
              • References
Page 12: Fractal measures of spatial pattern as a heuristic for ...sro.sussex.ac.uk/id/eprint/60356/1/150519.full.pdf · fractal measures and persistence exists. We combine theoretical arguments

11

rsosroyalsocietypublishingorgRSocopensci3150519

14 Ives A Dennis B Cottingham K Carpenter S 2003

Estimating community stability and ecologicalinteractions from time-series data Ecol Monogr 73301ndash330 (doi1018900012-9615(2003)073[0301ECSAEI]20CO2)

15 Berryman A Turchin P 2001 Identifying thedensity-dependent structure underlying ecologicaltime series Oikos 92 265ndash270 (doi101034j1600-07062001920208x)

16 Holling CS 1996 Engineering resilience versusecological resilience In Engineering withinecological constraints (ed P Schulze) pp 31ndash44Washington DC National Academy

17 Sibly RM Barker D DenhamMC Hone J Pagel M2005 On the regulation of populations of mammalsbirds fish and insects Science 309 607ndash610(doi101126science1110760)

18 Legendre P Fortin MJ 1989 Spatial pattern andecological analysis Vegetatio 80 107ndash138(doi101007BF00048036)

19 Dakos V Keacutefi S Rietkerk M Van Nes EH Scheffer M2011 Slowing down in spatially patternedecosystems at the brink of collapse Am Nat 177E153ndashE166 (doi101086659945)

20 Mandelbrot BB 1983 The fractal geometry of natureNew York NY Macmillan

21 Scanlon TM Caylor KK Levin SA Rodriguez-Iturbe I2007 Positive feedbacks promote power-lawclustering of Kalahari vegetation Nature 449209ndash212 (doi101038nature06060)

22 Keacutefi S Rietkerk M Alados CL Pueyo Y PapanastasisVP ElAich A de Ruiter PC 2007 Spatial vegetationpatterns and imminent desertification inMediterranean arid ecosystems Nature 449213ndash217 (doi101038nature06111)

23 Maestre FT Escudero A 2009 Is the patch sizedistribution of vegetation a suitable indicator ofdesertification processes Ecology 90 1729ndash1735(doi10189008-20961)

24 Weerman E Van Belzen J Rietkerk M TemmermanS Keacutefi S Herman P Van de Koppel J 2012 Changesin diatom patch-size distribution and degradationin a spatially self-organized intertidal mudflatecosystem Ecology 93 608ndash618(doi10189011-06251)

25 Hastings HM Sugihara G 1993 Fractals a userrsquosguide for the natural sciences Oxford UK OxfordUniversity Press

26 Pascual M Roy M Guichard F Flierl G 2002 Clustersize distributions signatures of selfndashorganization inspatial ecologies Phil Trans R Soc Lond B 357657ndash666 (doi101098rstb20010983)

27 Vicsek T Family F 1984 Dynamic scaling foraggregation of clusters Phys Rev Lett 52 1669(doi101103PhysRevLett521669)

28 Irvine M Bull J Keeling M 2015 Aggregationdynamics explain vegetation patch-size

distributions Theor Popul Biol 108 70ndash74(doi101016jtpb201512001)

29 Xin Xp Gao Q Li Yy Yang Z 1999 Fractal analysis ofgrass patches under grazing and flood disturbancein an Alkaline grassland [J] Acta Bot Sin 41307ndash313

30 Imre AR Cseh D Neteler M Rocchini D 2011 Korcakdimension as a novel indicator of landscapefragmentation and re-forestation Ecol Indicators11 1134ndash1138 (doi101016jecolind201012013)

31 Erlandsson J McQuaid CD Skoumlld M 2011 Patchinessand co-existence of indigenous and invasivemussels at small spatial scales the interactionof facilitation and competition PLoS ONE 6e26958 (doi101371journalpone0026958)

32 Sugihara G May R 1990 Applications of fractals inecology Trends Ecol Evol 5 79ndash86(doi1010160169-5347(90)90235-6)

33 Imre AR Novotny J Rocchini D 2012 TheKorcak-exponent a non-fractal descriptor forlandscape patchiness Ecol Complexity 12 70ndash74(doi101016jecocom201210001)

34 Bull JC Kenyon EJ Cook KJ 2012 Wasting diseaseregulates long-term population dynamics in athreatened seagrass Oecologia 169 135ndash142(doi101007s00442-011-2187-6)

35 Jackson EL Higgs S Allsop T Cathray A Evans JLangmead O 2011 Isles of Scilly seagrass mappingNatural England NECR087

36 Orth RJ Moore KA 1988 Distribution of Zosteramarina L and Ruppia maritima L sensu lato alongdepth gradients in the lower Chesapeake Bay USAAquat Bot 32 291ndash305 (doi1010160304-3770(88)90122-2)

37 Krause-Jensen D Pedersen MF Jensen C 2003Regulation of eelgrass (Zostera marina) cover alongdepth gradients in Danish coastal waters Estuaries26 866ndash877 (doi101007BF02803345)

38 Balzter H Braun PW Koumlhler W 1998 Cellularautomata models for vegetation dynamics EcolModel 107 113ndash125 (doi101016S0304-3800(97)00202-0)

39 Hogeweg P 1988 Cellular automata as aparadigm for ecological modeling Appl MathComput27 81ndash100 (doi1010160096-3003(88)90100-2)

40 Lefever R Lejeune O 1997 On the origin of tigerbush Bull Math Biol 59 263ndash294 (doi101007BF02462004)

41 Clauset A Shalizi CR Newman ME 2009 Power-lawdistributions in empirical data SIAM Rev 51661ndash703 (doi101137070710111)

42 Lobelle D Kenyon EJ Cook KJ Bull JC 2013 Localcompetition and metapopulation processes drive

long-term seagrass-epiphyte population dynamicsPLoS ONE 8 e57072 (doi101371journalpone0057072)

43 Potouroglou M Kenyon EJ Gall A Cook KJ Bull JC2014 The roles of flowering overwinter survival andsea surface temperature in the long-termpopulation dynamics of Zostera marina around theIsles of Scilly UKMar Pollut Bull 83 500ndash507(doi101016jmarpolbul201403035)

44 Levins R 1969 Some demographic and geneticconsequences of environmental heterogeneity forbiological control Bull Entomol Soc Am 15237ndash240 (doi101093besa153237)

45 Royama T 1992 Analytical population dynamicsvol 10 Berlin Germany Springer Science ampBusiness Media

46 Bjoslashrnstad ON Begon M Stenseth NC Falck W SaitSM Thompson DJ 1998 Population dynamics of theIndian meal moth demographic stochasticity anddelayed regulatory mechanisms J Anim Ecol 67110ndash126 (doi101046j1365-2656199800168x)

47 Wood S 2006 Generalized additive models anintroduction with R Boca Raton FL CRC Press

48 Sibly RM Barker D Hone J Pagel M 2007 On thestability of populations of mammals birds fish andinsects Ecol Lett 10 970ndash976(doi101111j1461-0248200701092x)

49 Keacutefi S Rietkerk M Roy M Franc A De Ruiter PCPascual M 2011 Robust scaling in ecosystems andthe meltdown of patch size distributions beforeextinction Ecol Lett 14 29ndash35 (doi101111j1461-0248201001553x)

50 Efron B 1981 Nonparametric estimates of standarderror the jackknife the bootstrap and othermethods Biometrika 68 589ndash599(doi101093biomet683589)

51 Larkum AW Orth RJ Duarte C 2006 Seagrassesbiology ecology and conservation Berlin GermanySpringer

52 Keacutefi S et al 2014 Early warning signals of ecologicaltransitions methods for spatial patterns PLoS ONE9 e92097 (doi101371journalpone0092097)

53 Cunha A Santos R Gaspar A Bairros M 2005Seagrass landscape-scale changes in response todisturbance created by the dynamics ofbarrier-islands a case study from Ria Formosa(Southern Portugal) Estuar Coast Shelf Sci 64636ndash644 (doi101016jecss200503018)

54 Bunde A Havlin S 1991 Fractals and disorderedsystems New York NY Springer

55 Adler P Raff D Lauenroth W 2001 The effect ofgrazing on the spatial heterogeneity of vegetationOecologia 128 465ndash479 (doi101007s004420100737)

56 Packer A Clay K 2000 Soil pathogens and spatialpatterns of seedling mortality in a temperate treeNature 404 278ndash281 (doi10103835005072)

on April 7 2016httprsosroyalsocietypublishingorgDownloaded from

  • Introduction
  • Lattice-based simulation with environmental gradient
    • Model development
    • Model analysis
      • Field survey and aerial photography of seagrass meadows
        • Seagrass meadow locations
        • Survey protocol
        • Statistical modelling
          • Results
            • Simulations
            • Seagrass data analysis
              • Discussion
              • References