genes, disease, and the environment€¦ · genes, disease, and the environment!! genotype is the...

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Genes, disease, and the environment Genotype is the DNA you have Phenotype is the trait you display Genotype does NOT always cause a phenotype directly The environment plays a big role!

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Page 1: Genes, disease, and the environment€¦ · Genes, disease, and the environment!! Genotype is the DNA you have!! Phenotype is the trait you display!! Genotype does NOT always cause

Genes, disease, and the environment!ü Genotype is the DNA you have!ü Phenotype is the trait you display!ü Genotype does NOT always cause a

phenotype directly!ü The environment plays a big role! !

Page 2: Genes, disease, and the environment€¦ · Genes, disease, and the environment!! Genotype is the DNA you have!! Phenotype is the trait you display!! Genotype does NOT always cause

Plants sense light!

QuickTime™ and aSorenson Video decompressorare needed to see this picture.

Roger Hangarter: http://plantsinmotion.bio.indiana.edu/usbg/toc.htm

Page 3: Genes, disease, and the environment€¦ · Genes, disease, and the environment!! Genotype is the DNA you have!! Phenotype is the trait you display!! Genotype does NOT always cause

Plants grow differently with and without light!

QuickTime™ and aSorenson Video 3 decompressorare needed to see this picture.

Roger Hangarter: http://plantsinmotion.bio.indiana.edu/usbg/toc.htm

Sunflowers in dark Sunflowers in light

Page 4: Genes, disease, and the environment€¦ · Genes, disease, and the environment!! Genotype is the DNA you have!! Phenotype is the trait you display!! Genotype does NOT always cause

Plants grow differently with and without light!

Peas in dark Peas in light

Page 5: Genes, disease, and the environment€¦ · Genes, disease, and the environment!! Genotype is the DNA you have!! Phenotype is the trait you display!! Genotype does NOT always cause

The light-sensing phenotype is a MULTI-genic trait. !

ü One of the important genes is called Phytochrome A!

ü  If a plant is has a ‘broken allele’ of Phytochrome A!ü It is called a PhyA mutant!ü It cannot sense Far-Red light!

ü There are other genes that help sense light!ü PhyB, PhyC, PhyD, PhyE, Cryptochrome!

Page 6: Genes, disease, and the environment€¦ · Genes, disease, and the environment!! Genotype is the DNA you have!! Phenotype is the trait you display!! Genotype does NOT always cause

Dark (no light) White light (all wavelengths)!

Far Red (only one wavelength)

Wild type

(normal) AA

PhyA (mutant)

aa

The phenotype of a phyA mutant depends on the environment!!

Page 7: Genes, disease, and the environment€¦ · Genes, disease, and the environment!! Genotype is the DNA you have!! Phenotype is the trait you display!! Genotype does NOT always cause

Dark (no light) White light (all wavelengths)!

Far Red (only one wavelength)

Wild type

(normal) AA

PhyA (mutant)

aa

QuickTime™ and aTIFF (LZW) decompressor

are needed to see this picture.

QuickTime™ and aTIFF (LZW) decompressor

are needed to see this picture.

QuickTime™ and aTIFF (LZW) decompressor

are needed to see this picture.

QuickTime™ and aTIFF (LZW) decompressor

are needed to see this picture.

QuickTime™ and aTIFF (LZW) decompressor

are needed to see this picture.

The phenotype of a phyA mutant depends on gene expression.!

QuickTime™ and aTIFF (LZW) decompressor

are needed to see this picture.

Page 8: Genes, disease, and the environment€¦ · Genes, disease, and the environment!! Genotype is the DNA you have!! Phenotype is the trait you display!! Genotype does NOT always cause

Kaiser Permanente Research Program on Genes, Environment, and Health (400,000 people enrolled)!

ü  http://www.dor.kaiser.org/studies/rpgeh/index.html!ü  Filled out survey!

ü  Family health history!ü  Personal health history!ü  Lifestyle things!

ü  Alcohol, smoking, etc.!ü  Food (source and composition)!ü  Exercise!ü  Work, location (they will do air quality tests)!

ü  Gave KP medical number!!ü  They will track my medical history!

ü  DNA sample!

Page 9: Genes, disease, and the environment€¦ · Genes, disease, and the environment!! Genotype is the DNA you have!! Phenotype is the trait you display!! Genotype does NOT always cause
Page 10: Genes, disease, and the environment€¦ · Genes, disease, and the environment!! Genotype is the DNA you have!! Phenotype is the trait you display!! Genotype does NOT always cause
Page 11: Genes, disease, and the environment€¦ · Genes, disease, and the environment!! Genotype is the DNA you have!! Phenotype is the trait you display!! Genotype does NOT always cause
Page 12: Genes, disease, and the environment€¦ · Genes, disease, and the environment!! Genotype is the DNA you have!! Phenotype is the trait you display!! Genotype does NOT always cause
Page 13: Genes, disease, and the environment€¦ · Genes, disease, and the environment!! Genotype is the DNA you have!! Phenotype is the trait you display!! Genotype does NOT always cause

History, privacy, Population genetics!

ü Iceland - 275,000 “pure bred” population, all enrolled (by Parlaiment) in a private company’s study in 1998 (dECODE genetics)!ü  http://www.decode.com/!

ü Genetic Information Non-discrimination Act - United States, 2008!ü  Library of congress and NIH sites!

ü  http://thomas.loc.gov/cgi-bin/bdquery/z?d110:h.r.00493:!ü  http://www.genome.gov/24519851!

ü  Hardy-Weinberg equilibrium!ü  p + q = 1!ü  p2 + 2pq + q2 = 1!