glnr
DESCRIPTION
GlnR. GlnR controls transcription of glnRA operon in B. subtilis via two binding sites. TnrA does not act upon the first site. Schreier et al. 1991 J. Mol. Biol. 220:241 Gutowski and Schreier 1992 J. Bacteriol 174:671 Brown and Sonenshein 1996 J. Bacteriol 178:2450 - PowerPoint PPT PresentationTRANSCRIPT
GlnR
Schreier et al. 1991 J. Mol. Biol. 220:241Gutowski and Schreier 1992 J. Bacteriol 174:671Brown and Sonenshein 1996 J. Bacteriol 178:2450Zalieckas et al. 2006 J. Bacteriol 188:2578
GlnR controls transcription of glnRA operon in B. subtilis via two binding sites. TnrA does not act upon the first site.
lactococcus/streptococcus
lactobacillus/pediococcus/enterococcus
macrococcus/staphylococcus
Alignment of the upstream region of the glnRA operon in various species of the class Bacilli
bacillusgeo-paeni-lysini-oceano-anoxy-
leuconostoc/oenococcus
listeria
-35 -10GlnR
Bacilli (18)
Listeria (3)
Staphylococci (7)
Lactobacilli (8)
Leuconostoc (3)
Streptococci (12)
GlnR binding motifs derived from the alignment of the upstream region of the glnRA operon in various species of the class Bacilli
Eight sequence motif
>B1ATGTAAGAAAAACTAACAT>B2ATGTAAGAAAAACTAACAT>B3ATGTAAGAAAAGCTAACAT>B4ATGTTAGAAAAGCTAACAT>B5ATGTTAGGAATCCTTACAT>B6ATGTTAAGATTCCTTACAT>B7ATGTGAAGATTTGTGACAT>B8TTGTGATTTTTTGTGACAT
>LIS1ATGTTAGATTATCTTACAT>LIS2ATGTTAGATTATCTTACAT>LIS3ATGTTAGATTATCTTACAT>LIS4ATGTTAGATTATCTTACAT>LIS5ATGTTAGATTATCTTACAT>LIS6ATGTTAGAAAATCTTACAT>LIS7ATGTTAGAAAATCTTACAT>LIS8ATGTTAGAAAATCTTACAT
>Staph1ATGTAAGATTTCCTTACAT>Staph2ATGTAAGATTTCCTTACAT>Staph3ATGTTAGAAAACCTTACAT>Staph4ATGTTAGAAAACCTTACAT>Staph5ATGTTAGAAAACCTAACAT>Staph6ATGTTAGAAAACCTAACAT>Staph7ATGTCAGGAAACCTGACAT>Staph8ATGTCAGGAAACCTGACAT
>LAB1ATGTTAGAAAATCTAACAT>LAB2ATGTCAGAAAACCTAACAT>LAB3ATGTCAGAAAAGCTTACAT>LAB4GTGTGATATTTTCTAACAT>LAB5ATGTAAGAAAACCTTACAT>LAB6ATGTCAGAAAACCTAACAT>LAB7GTGTAAGAAAATATTACAT>LAB8TTGTGAGTTTTTCTAACAT
>LEU1ATGTTAGAAAACCTAACAC>LEU2ATGTTAGAAAACCTGACAC>LEU3ATGTTAGAAAACCTGACAC>LEU4ATGTTAGAAAACCTAACAC>LEU5ATGTTAGAAAACCTAACAC>LEU6ATGTTAGCTTTCCTAACAT>LEU7ATGTTAGCTTTCCTAACAT>LEU8ATGTTAGCTTTCCTAACAT
>STR1ATGTCAGAAAATCTAACAT>STR2ATGTCATAAAATCTAACAT>STR3ATGTCAGAAAATATAACAT>STR4ATGTAAGAAAATATAACAT>STR5ATGTAAGAAAATATCACAT>STR6ATGTTATATAATATCACAT>STR7ATGTTACATTTCGTGACAT>STR8GTGTTACTTTTAGTGACAT
Summary page of eight sequence motif
bacilli (- streptococci) streptococci
>1ATGTTAGAAAATCTAACAT>2ATGTTAGAAAATCTAACAT>3ATGTCAGAAAATCTTACAT>4ATGTCAGAAAACCTTACAT>5ATGTAAGAAAACCTCACAT>6ATGTAAGATTACATCACAT>7ATGTGATATTTGATGACAT>8GTGTGACGTTTAGTGACAT
Listeria and Leuconostoc left out because of small sample size
TnrA
>amtBATGTCAGGAAATCTTACAT>ansZ/yccCCTGAGAGAAAAGCTGACTG>gabPCTGGTATATTTTCTTACAC>glnQTGGGTATATTTTCTGACAA>nasAGTGTCACAAAAACTTACAC>nasBGTGTAAGTTTTTGTGACAC>nasDTTGTTACATTTTATAACAT>oppAATGGAAGAAAAACTAACGA>pucJTTGTTACATTTTCTTACAA>pucRATGTCAGTTTATGTAACAC>ykzBACGGAAGAAAAATTAACAA>ywrDTCGTCAGTTTTTCTGCCGG
Activating sites TnrA in B. subtilis
amtB
pucR