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Lab Management Guidelines v2.0.2019 Hereditary Cancer Syndrome Multigene Panels MOL.TS.182.A v2.0.2019 Introduction Hereditary cancer syndrome multigene panel testing is addressed by this guideline. Procedures addressed The inclusion of any procedure code in this table does not imply that the code is under management or requires prior authorization. Refer to the specific Health Plan's procedure code list for management requirements. Procedures addressed by this guideline Procedure codes APC Sequencing 81201 APC Deletion/Duplication Analysis 81203 ATM Sequencing 81408 BRCA1/2 Sequencing 81163 BRCA1/2 Deletion/Duplication Analysis 81164 BRCA1 Sequencing 81165 BRCA1 Deletion/Duplication Analysis 81166 BRCA2 Sequencing 81216 BRCA2 Deletion/Duplication Analysis 81167 Chromosomal Microarray [BAC], Constitutional 81228 Chromosomal Microarray [SNP], Constitutional 81229 MLH1 Sequencing 81292 MLH1 Deletion/Duplication Analysis 81294 MSH2 Sequencing 81295 MSH2 Deletion/Duplication Analysis 81297 MSH6 Sequencing 81298 MSH6 Deletion/Duplication Analysis 81300 PMS2 Sequencing 81317 PMS2 Deletion/Duplication Analysis 81319 © eviCore healthcare. All Rights Reserved. 1 of 20 400 Buckwalter Place Boulevard, Bluffton, SC 29910 (800) 918-8924 www.eviCore.com

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Page 1: Hereditary Cancer Syndrome Multigene Panels...Title Hereditary Cancer Syndrome Multigene Panels Subject Hereditary Cancer Syndrome Created Date 20190522212612Z

Lab Management Guidelines v2.0.2019

Hereditary Cancer Syndrome Multigene Panels

MOL.TS.182.Av2.0.2019

Introduction

Hereditary cancer syndrome multigene panel testing is addressed by this guideline.

Procedures addressed

The inclusion of any procedure code in this table does not imply that the code is under management or requires prior authorization. Refer to the specific Health Plan's procedure code list for management requirements.

Procedures addressed by this guideline

Procedure codes

APC Sequencing 81201

APC Deletion/Duplication Analysis 81203

ATM Sequencing 81408

BRCA1/2 Sequencing 81163

BRCA1/2 Deletion/Duplication Analysis 81164

BRCA1 Sequencing 81165

BRCA1 Deletion/Duplication Analysis 81166

BRCA2 Sequencing 81216

BRCA2 Deletion/Duplication Analysis 81167

Chromosomal Microarray [BAC], Constitutional

81228

Chromosomal Microarray [SNP], Constitutional

81229

MLH1 Sequencing 81292

MLH1 Deletion/Duplication Analysis 81294

MSH2 Sequencing 81295

MSH2 Deletion/Duplication Analysis 81297

MSH6 Sequencing 81298

MSH6 Deletion/Duplication Analysis 81300

PMS2 Sequencing 81317

PMS2 Deletion/Duplication Analysis 81319

© eviCore healthcare. All Rights Reserved. 1 of 20400 Buckwalter Place Boulevard, Bluffton, SC 29910 (800) 918-8924 www.eviCore.com

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Lab Management Guidelines v2.0.2019

Procedures addressed by this guideline

Procedure codes

PTEN Sequencing 81321

PTEN Deletion/Duplication Analysis 81323

Hereditary breast cancer-related disorders (eg, hereditary breast cancer, hereditary ovarian cancer, hereditary endometrial cancer); genomic sequence analysis panel, must include sequencing of at least 10 genes, always including BRCA1, BRCA2,CDH1, MLH1, MSH2, MSH6, PALB2, PTEN, STK11, and TP53

81432

Hereditary breast cancer-related disorders (eg, hereditary breast cancer, hereditary ovarian cancer, hereditary endometrial cancer); duplication/deletion analysis panel, must include analyses for BRCA1, BRCA2, MLH1, MSH2, and STK11

81433

Hereditary colon cancer disorders (eg, Lynch syndrome, PTEN hamartoma syndrome, Cowden syndrome, familial adenomatosis polyposis); genomic sequence analysis panel, must include sequencing of at least 10 genes, including APC, BMPR1A, CDH1, MLH1, MSH2, MSH6, MUTYH, PTEN, SMAD4, and STK11

81435

Hereditary colon cancer disorders (eg, Lynch syndrome, PTEN hamartoma syndrome, Cowden syndrome, familial adenomatosis polyposis); duplication/deletion analysis panel, must include analysis of at least 5 genes, including MLH1, MSH2, EPCAM, SMAD4, and STK11

81436

Hereditary neuroendocrine tumor disorders (eg, medullary thyroid carcinoma, parathyroid carcinoma, malignant pheochromocytoma or paraganglioma); genomic sequence analysis panel, must include sequencing of at least 6 genes, including MAX, SDHB, SDHC, SDHD, TMEM127, and VHL

81437

© eviCore healthcare. All Rights Reserved. 2 of 20400 Buckwalter Place Boulevard, Bluffton, SC 29910 (800) 918-8924 www.eviCore.com

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Procedures addressed by this guideline

Procedure codes

Hereditary neuroendocrine tumor disorders (eg, medullary thyroid carcinoma, parathyroid carcinoma, malignant pheochromocytoma or paraganglioma); duplication/deletion analysis panel, must include analyses for SDHB, SDHC, SDHD, and VHL

81438

BreastNext, Ambry Genetics, Ambry Genetics

0102U

CancerNext, Ambry Genetics, Ambry Genetics

0104U

ColoNext, Ambry Genetics, Ambry Genetics

0101U

OvaNext, Ambry Genetics, Ambry Genetics

0103U

Miscellaneous hereditary cancer syndrome gene tests

81400

Miscellaneous hereditary cancer syndrome gene tests

81401

Miscellaneous hereditary cancer syndrome gene tests

81402

Miscellaneous hereditary cancer syndrome gene tests

81403

Miscellaneous hereditary cancer syndrome gene tests

81404

Miscellaneous hereditary cancer syndrome gene tests

81405

Miscellaneous hereditary cancer syndrome gene tests

81406

Miscellaneous hereditary cancer syndrome gene tests

81407

Miscellaneous hereditary cancer syndrome gene tests

81408

Miscellaneous hereditary cancer syndrome gene tests

81479

© eviCore healthcare. All Rights Reserved. 3 of 20400 Buckwalter Place Boulevard, Bluffton, SC 29910 (800) 918-8924 www.eviCore.com

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Lab Management Guidelines v2.0.2019

What are hereditary cancer syndromes

Definition

A hereditary cancer syndrome is when a mutation in a single gene causes a significantly increased risk for certain cancers. Hereditary cancer syndromes are usually characterized by a pattern of specific cancer types occurring together in the same family, younger ages of cancer diagnosis than usual, or other co-existing non-cancer conditions.

Prevalence

Most cancer is sporadic and believed to be caused by a mix of behavioral or lifestyle, environmental, and inherited risk factors. However, about 5-10% of cancers are believed to have a major inherited component.1

Hereditary cancer syndromes

There are at least 50 hereditary cancer syndromes.1 This table lists some of the most common along with associated cancers.2

Syndrome Associated cancers

Hereditary breast and ovarian cancer syndrome (HBOC)

• breast

• ovarian, fallopian tube, or primary peritoneal cancer

• pancreatic

• prostate

Lynch syndrome • colorectal

• endometrial

• small bowel

• stomach

• ovarian

• pancreatic

• ureteral and renal pelvis

• biliary tract

• brain

• sebaceous adenoma

• keratoacanthoma tumors

© eviCore healthcare. All Rights Reserved. 4 of 20400 Buckwalter Place Boulevard, Bluffton, SC 29910 (800) 918-8924 www.eviCore.com

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Syndrome Associated cancers

Familial adenomatous polyposis • colorectal and other gastrointestinal cancers

• gastrointestinal tract polyps such as adenomas and fundic gland

• osteomas

• desmoids

• thyroid cancer

• hepatoblastoma

MUTYH-associated polyposis • colorectal and other gastrointestinal cancers

• adenomas

• hyperplastic polyps

Cowden syndrome • benign and malignant tumors of the breast, endometrium, and thyroid

• cancer and polyps (hamartomas) in the colon and rectum

Li Fraumeni syndrome • soft tissue sarcoma

• osteosarcoma

• leukemia

• melanoma

• breast

• pancreas

• colon

• adrenal cortex

• stomach

• esophagus

• brain

© eviCore healthcare. All Rights Reserved. 5 of 20400 Buckwalter Place Boulevard, Bluffton, SC 29910 (800) 918-8924 www.eviCore.com

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Syndrome Associated cancers

Peutz-Jeghers syndrome • polyps (hamartomas) in the stomach

• small intestine and colon

• pancreas

• lung

• breast

• uterine

• ovarian

Overlapping clinical findings

Many hereditary cancer syndromes can include the same types of cancer and therefore have overlapping clinical findings. For example, breast cancer is a feature of HBOC caused by BRCA mutations, Li Fraumeni syndrome, Cowden syndrome, and others. Sometimes, the pattern of cancers in the family or pathognomonic features makes the underlying syndrome clear. However, in many cases it can be difficult to reliably diagnose hereditary cancer syndromes based on clinical and family history alone.

Test information

Introduction

Testing for hereditary cancer syndromes may include multigene panel testing.

Sanger Sequencing

Until recently, most sequencing tests used the Sanger sequencing methodology that was originally developed in the 1970s. Sanger sequencing is labor intensive and did not lend itself to high-throughput applications.

Next-generation sequencing (NGS)

NGS, which is also sometimes called massively parallel sequencing, has been developing since about 2005 to allow larger scale and more efficient gene sequencing. NGS relies on sequencing many copies of small pieces of DNA simultaneously and using bioinformatics to assemble the sequence.

The efficiency of NGS has led to an increasing number of large, multi-gene testing panels. NGS panels that test several genes at once are particularly well-suited to conditions caused by more than one gene or where there is considerable clinical overlap between conditions making it difficult to reliably narrow down likely causes. As

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a result, several laboratories have begun to combine genes involved in causing various hereditary cancer syndromes, which often have both of those characteristics.

Detection rate of NGS

NGS may not perform as well as Sanger sequencing in some applications. Results may also be obtained that cannot be adequately interpreted based on the current knowledgebase.

o When a sequence variation is identified that has not been previously characterized or shown to cause the disorder in question, it is called a variant of uncertain significance (VUS). VUSs are relatively common findings when sequencing large amounts of DNA with NGS.

o Under certain circumstances, technologies used in multi-gene testing may fail to identify mutations that might be identifiable through single-gene testing. If high clinical suspicion remains for a particular syndrome after negative multi-gene test results, consultation with the testing lab, additional targeted genetic testing, or both may be warranted.

Hereditary cancer syndrome multi-gene panels

Hereditary cancer syndrome multi-gene panels include a wide variety of genes and may be focused on the genetic causes of a particular cancer type or broad detection of common hereditary cancer syndromes.

Multi-gene tests vary in technical specifications. For example, different labs may have different depth of coverage, extent of Intron/Exon Boundary analysis, or methodology of large Deletion/Duplication Analysis.

Because genes can be easily added or removed from multi-gene tests over time by a given lab, medical records must document

the genes included in the specific multi-gene test used from each patient, and

the labs that performed the panels.

Moderate risk genes

Panels may also include genes believed to be associated with cancer, but with a more modest impact on risk than recognized hereditary cancer syndromes. Results for such genes are of less clear value because there often are not clear management recommendation for mutation-positive individuals.

© eviCore healthcare. All Rights Reserved. 7 of 20400 Buckwalter Place Boulevard, Bluffton, SC 29910 (800) 918-8924 www.eviCore.com

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Guidelines and evidence

Introduction

This section includes relevant guidelines and evidence pertaining to herditary cancer syndrome panel testing.

National Comprehensive Cancer Network (NCCN)

The National Comprehensive Cancer Network (NCCN) makes the following general recommendations for using multi-gene panels in evaluating risk for breast and ovarian cancer and now includes this option in some management algorithms:3 ,4

“Because of their complexity, multi-gene testing is ideally offered in the context of professional genetic expertise for pre- and post-test counseling.”

“Testing of an individual without a cancer diagnosis should only be considered when an appropriate affected family member is unavailable for testing.”

“When more than one gene can explain an inherited cancer syndrome, then multi-gene testing may be more efficient and/or cost effective. As commercially available tests differ in the specific genes analyzed (as well as classification of variants and many other factors), choosing the specific laboratory and test panel is important. Multi-gene testing can include ‘intermediate’ penetrant (moderate-risk) genes. For many of these genes, there is limited data on the degree of cancer risk and there are no clear guidelines on risk management for carriers of mutations. Not all genes included on available multi-gene tests are necessarily clinically actionable.” If a moderate risk gene mutation is identified, “gene carriers should be encouraged to participate in clinical trials or genetic registries.”

“Mutations in many breast cancer susceptibility genes involved in DNA repair may be associated with the rare autosomal recessive condition, Fanconi anemia.” Therefore, multi-gene testing may unexpectedly reveal that an individual and their family are at an increased risk for this condition.

“There is an increased likelihood of finding variants of unknown significance when testing for mutations in multiple genes.”

American College of Medical Genetics

The American College of Medical Genetics has a policy statement that offers general guidance on the clinical application of large-scale sequencing focusing primarily on whole exome and whole genome testing. However, some of the recommendations regarding counseling around unexpected results, variants of unknown significance, and minimum requirements for reporting apply to many NGS applications.5

© eviCore healthcare. All Rights Reserved. 8 of 20400 Buckwalter Place Boulevard, Bluffton, SC 29910 (800) 918-8924 www.eviCore.com

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Lab Management Guidelines v2.0.2019

Criteria

Introduction

Requests for hereditary cancer syndrome panel testing are reviewed using these criteria.

Criteria

This guideline applies to all hereditary cancer syndrome panels, which are defined as assays that simultaneously test for more than one hereditary cancer syndrome. This guideline does not apply when testing more than one gene related to the same hereditary cancer syndrome (e.g., Lynch syndrome).

Medical necessity coverage generally relies on criteria established for testing individual hereditary cancer syndromes. See the Coverage Guidance table for examples of genes known to be included in currently available hereditary cancer syndrome multi-gene panels with coverage guidance. This is not intended to be a complete list of available genes as these panels are evolving rapidly.

However, this guideline takes into account the efficiency gains from simultaneously testing multiple candidate genes. Therefore, coverage requirements rely to some degree on how the panel will be billed. Panels may be billed in a variety of ways:

Gene sequencing portion:

o A separate CPT code for sequencing each gene studied or a subset (e.g., 81201, 81294, 81297, etc.)

o A single CPT code developed specifically for a particular type of panel (e.g., 81432, 81435, 81437)

o A single unlisted CPT code (e.g., 81479)

Deletion/duplication analysis portion:

o A separate CPT code for deletion/duplication analysis of each gene studied or a subset (e.g., 81203, 81292, 81294, 81404, 81479, etc.)

o A single CPT code developed specifically for a particular type of panel (e.g., 81433, 81436, 81438)

o Microarray analysis (e.g., 81228 or 81229)

o Part of a single unlisted CPT code for the sequencing and deletion/duplication portions of the panel (e.g., 81479)

Hereditary cancer syndrome multi-gene panels will be reimbursed when the following criteria are met:

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Panel will be billed with separate procedure codes for each gene analyzed (however, please note that the billed amount should not exceed the list price of the test).

o The medical necessity of each billed procedure will be assessed independently. See the Coverage Guidance table for gene-specific policy guidance.

When a patient meets medical necessity criteria for any hereditary cancer syndrome gene(s) included in a multi-gene panel, genetic testing for the clinically indicated gene(s) will be reimbursed. This includes the sequencing and deletion/duplication† components.

Any genes that are included in a multi-gene panel but do NOT meet medical necessity criteria will NOT be reimbursed. It will be at the laboratory, provider, and patient’s discretion to determine if a multi-gene panel remains the preferred testing option.

o Sequencing and/or deletion/duplication analysis† of any hereditary cancer syndrome gene(s) should only be performed once per lifetime and will therefore only be reimbursed once per lifetime. If gene testing was previously performed, and is now being included in a panel, such testing will not be separately reimbursable regardless of whether clinical coverage criteria are met, OR

Panel will be billed with a single procedure code to represent all genes being sequenced, with or without another single procedure code representing the deletion/duplication analysis† portion. Code(s) may be specific to that panel or an unlisted code, such as 81479.

o No previous hereditary cancer syndrome testing has been performed

Medical necessity must be established for at least two conditions included in the panel (e.g., hereditary breast and ovarian cancer and Li Fraumeni syndrome). Note that this is two conditions and not two genes (i.e., meeting criteria for only Lynch syndrome, which is caused by mutations in at least 5 genes, would not fulfill criteria alone).

Although not a complete list, the following are considered separate conditions: Hereditary breast cancer - this includes both BRCA1/2 and PALB2.

Lynch syndrome

Li-Fraumeni

Familial adenomatous polyposis

Cowden syndrome

o Testing for one condition was performed and billed separately. A multi-gene panel is now being considered as a reflex and will be billed at a rate comparable to single syndrome pricing (e.g., myRisk update).

© eviCore healthcare. All Rights Reserved. 10 of 20400 Buckwalter Place Boulevard, Bluffton, SC 29910 (800) 918-8924 www.eviCore.com

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Medical necessity must be established for at least one condition included in the panel in addition to the already tested condition (e.g., hereditary breast and ovarian cancer was already performed, but Lynch syndrome criteria are also met).

Note that if BRCA1/2 testing was already performed and PALB2 criteria are now met, PALB2 testing alone would be reimbursable and not a reflex panel test (e.g. myRisk Update).

† When deletion/duplication testing is not part of a single panel CPT code being billed, deletion/duplication testing should be billed in only one of the following ways:

A separate CPT code for deletion/duplication analysis of each individual gene (may include non-specific molecular pathology tier 2 codes or unlisted code 81479), or

A single CPT code specific to the performed deletion/duplication analysis panel, or

A single microarray procedure

Procedure codes representing multiple methods for deletion/duplication testing will not be reimbursable for the same panel (e.g., test-specific deletion/duplication procedure codes and microarray will not both be reimbursable for the same panel).

Coverage guidance

The following table describes coverage guidance for genes associated with hereditary cancer syndromes.

Coverage Guidance for Genes Included in Hereditary Cancer Syndrome Multi-Gene Panels

Condition Test Name CPT Claim Code Reimbursement

Birt-Hogg-Dube syndrome

FLCN Sequencing

81479 FLCNSEQ MOL.CU.109

FLCN Deletion/Duplication Analysis

81479 FLCNDD MOL.CU.109

Cowden syndrome, PTEN hamartoma tumor syndrome

PTEN Deletion/Duplication Analysis

81323 NONE MOL.TS.223

PTEN Sequencing

81321 NONE MOL.TS.223

Cutaneous malignant melanoma

CDK4 Deletion/Duplication Analysis

81479 CDK4DD MOL.TS.170

© eviCore healthcare. All Rights Reserved. 11 of 20400 Buckwalter Place Boulevard, Bluffton, SC 29910 (800) 918-8924 www.eviCore.com

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Condition Test Name CPT Claim Code Reimbursement

CDK4 Exon 2 Sequencing

81479 CDK4EX2 MOL.TS.170

CDKN2A Deletion/Duplication Analysis

81479 CDKN2A MOL.TS.170

CDKN2A Sequencing

81404 CDKN2A MOL.TS.170

Familial adenomatous polyposis

APC Deletion/Duplication Analysis

81203 NONE MOL.TS.168

APC Sequencing

81201 NONE MOL.TS.168

Familial breast and/or ovarian cancer

AKT1 Deletion/Duplication Analysis

81479 AKT1DD Not reimbursed

AKT1 Sequencing

81479 AKT1SEQ Not reimbursed

ATM Deletion/Duplication Analysis

81479 ATM Not reimbursed

ATM Sequencing

81408 ATM Not reimbursed

BARD1 Deletion/Duplication Analysis

81479 BARD1DD Not reimbursed

BARD1 Sequencing

81479 BARD1SEQ Not reimbursed

BRIP1 Deletion/Duplication Analysis

81479 BRIP1DD Not reimbursed

BRIP1 Sequencing

81479 BRIP1 Not reimbursed

CHEK2 Deletion/Duplication Analysis

81479 CHEK2DD Not reimbursed

CHEK2 Sequencing

81479 CHEK2SEQ Not reimbursed

© eviCore healthcare. All Rights Reserved. 12 of 20400 Buckwalter Place Boulevard, Bluffton, SC 29910 (800) 918-8924 www.eviCore.com

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Condition Test Name CPT Claim Code Reimbursement

FAM175A Deletion/Duplication Analysis

81479 FAM175ADD Not reimbursed

FAM175A Sequencing

81479 FAM175ASEQ Not reimbursed

GEN1 Deletion/Duplication Analysis

81479 GEN1DD Not reimbursed

GEN1 Sequencing

81479 GEN1SEQ Not reimbursed

MRE11A Deletion/Duplication Analysis

81479 MRE11ADD Not reimbursed

MRE11A Sequencing

81479 MRE11ASEQ Not reimbursed

NBN Deletion/Duplication Analysis

81479 NBNDD Not reimbursed

NBN Sequencing

81479 NBNSEQ Not reimbursed

RAD50 Deletion/Duplication Analysis

81479 RAD50DD Not reimbursed

RAD50 Sequencing

81479 RAD50SEQ Not reimbursed

RAD51 Deletion/Duplication Analysis

81479 RAD51DD Not reimbursed

RAD51 Sequencing

81479 RAD51SEQ Not reimbursed

RAD51C Deletion/Duplication Analysis

81479 RAD51CDD Not reimbursed

RAD51C Sequencing

81479 RAD51CSEQ Not reimbursed

RAD51D Deletion/Duplication Analysis

81479 RAD51DDD Not reimbursed

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Condition Test Name CPT Claim Code Reimbursement

RAD51D Sequencing

81479 RAD51DSEQ Not reimbursed

SMARCA4 Deletion/Duplication Analysis

81479 SMARCA4DD Not reimbursed

SMARCA4 Sequencing

81479 SMARCA4SEQ Not reimbursed

XRCC2 Deletion/Duplication Analysis

81479 XRCC2DD Not reimbursed

XRCC2 Sequencing

81479 XRCC2SEQ Not reimbursed

XRCC3 Deletion/Duplication Analysis

81479 XRCC3DD Not reimbursed

XRCC3 Sequencing

81479 XRCC3SEQ Not reimbursed

Familial colorectal cancer

AXIN2 Deletion/Duplication Analysis

81479 AXIN2DD Not reimbursed

AXIN2 Sequencing

81479 AXIN2SEQ Not reimbursed

GALNT12 Deletion/Duplication Analysis

81479 GALNT12DD Not reimbursed

GALNT12 Sequencing

81479 GALNT12SEQ Not reimbursed

MLH3 Deletion/Duplication Analysis

81479 MLH3DD Not reimbursed

MLH3 Sequencing

81479 MLH3SEQ Not reimbursed

POLE Sequencing

81479 POLESEQ Not reimbursed

POLD1 Sequencing

81479 POLD1SEQ Not reimbursed

© eviCore healthcare. All Rights Reserved. 14 of 20400 Buckwalter Place Boulevard, Bluffton, SC 29910 (800) 918-8924 www.eviCore.com

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Condition Test Name CPT Claim Code Reimbursement

Familial cutaneous telangiectasia and cancer syndrome

ATR Deletion/Duplication Analysis

81479 ATRDD Not reimbursed

ATR Sequencing

81479 ATRSEQ Not reimbursed

Familial pancreatic cancer

PRSS1 Deletion/Duplication Analysis

81479 PRSS1 Not reimbursed

PRSS1 Sequencing

81404 PRSS1 Not reimbursed

Familial prostate cancer

HOXB13 Deletion/Duplication Analysis

81479 HOXB13DD Not reimbursed

HOXB13 Sequencing

81479 HOXB13SEQ Not reimbursed

Familial renal cell carcinoma

MITF Sequencing

81479 MITFSEQ Not reimbursed

MITF Deletion/Duplication Analysis

81479 MITFDD Not reimbursed

Familial Wilms tumor

WT1 Sequencing

81405 WT1 MOL.CU.109

Hereditary breast and ovarian cancer

BRCA1/2 Sequencing

81163 NONE MOL.TS.238

BRCA1/2 Deletion/Duplication Analysis

81164 NONE MOL.TS.238

BRCA1 Sequencing

81165 NONE MOL.TS.238

BRCA1 Deletion/Duplication Analysis

81166 NONE MOL.TS.238

BRCA2 Sequencing

81216 NONE MOL.TS.238

BRCA2 Deletion/Duplication Analysis

81167 NONE MOL.TS.238

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Condition Test Name CPT Claim Code Reimbursement

Hereditary breast and pancreatic cancer

PALB2 Sequencing

81406 PALB2 MOL.TS.251

Hereditary diffuse gastric cancer

CDH1 Sequencing

81406 CDH1 MOL.CU.109

CTNNA1 Deletion/Duplication Analysis

81479 CTNNA1DD MOL.CU.109

CTNNA1 Sequencing

81479 CTNNA1SEQ MOL.CU.109

Hereditary leiomyomatosis with renal cell cancer

FH Sequencing 81405 FH MOL.CU.109

Hereditary mixed polyposis syndrome

GREM1 Deletion/Duplication Analysis

81479 GREM1DD Not reimbursed

GREM1 Sequencing

81479 GREM1SEQ Not reimbursed

Hereditary mixed polyposis syndrome, Juvenile polyposis syndrome

BMPR1A Deletion/Duplication Analysis

81479 BMPR1ADD MOL.CU.109

BMPR1A Sequencing

81479 BMPR1ASEQ MOL.CU.109

Hereditary papillary renal cell carcinoma

MET Sequencing

81479 METSEQ MOL.CU.109

MET Deletion/Duplication Analysis

81479 METDD MOL.CU.109

Hereditary paraganglioma-pheochromocytoma syndromes

SDHA Sequencing

81406 SDHA MOL.CU.109

SDHB Deletion/Duplication Analysis

81479 SDHB MOL.CU.109

SDHB Sequencing

81405 SDHB MOL.CU.109

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Lab Management Guidelines v2.0.2019

Condition Test Name CPT Claim Code Reimbursement

SDHC Deletion/Duplication Analysis

81404 SDHC MOL.CU.109

SDHC Sequencing

81405 SDHC MOL.CU.109

SDHD Deletion/Duplication Analysis

81479 SDHD MOL.CU.109

SDHD Sequencing

81404 SDHD MOL.CU.109

MAX Sequencing

81479 MAXSEQ MOL.CU.109

MAX Deletion/Duplication Analysis

81479 MAXDD MOL.CU.109

SDHAF2 Sequencing

81479 SDHAF2SEQ MOL.CU.109

SDHAF2 Deletion/Duplication Analysis

81479 SDHAF2DD MOL.CU.109

TMEM127 Sequencing

81479 TMEM127SEQ MOL.CU.109

TMEM127 Deletion/Duplication Analysis

81479 TMEM127DD MOL.CU.109

Juvenile polyposis syndrome

SMAD4 Deletion/Duplication Analysis

81405 SMAD4 MOL.CU.109

SMAD4 Sequencing

81406 SMAD4 MOL.CU.109

Li-Fraumeni syndrome

TP53 Deletion/Duplication Analysis

81479 TP53 MOL.TS.193

TP53 Sequencing

81405 TP53 MOL.TS.193

TP53 Targeted Sequencing

81404 TP53 MOL.TS.193

© eviCore healthcare. All Rights Reserved. 17 of 20400 Buckwalter Place Boulevard, Bluffton, SC 29910 (800) 918-8924 www.eviCore.com

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Lab Management Guidelines v2.0.2019

Condition Test Name CPT Claim Code Reimbursement

Lynch syndrome

EPCAM Deletion/Duplication Analysis

81403 EPCAM MOL.TS.197

MLH1 Deletion/Duplication Analysis

81294 NONE MOL.TS.197

MLH1 Sequencing

81292 NONE MOL.TS.197

MSH2 Deletion/Duplication Analysis

81297 NONE MOL.TS.197

MSH2 Sequencing

81295 NONE MOL.TS.197

MSH6 Deletion/Duplication Analysis

81300 NONE MOL.TS.197

MSH6 Sequencing

81298 NONE MOL.TS.197

PMS2 Deletion/Duplication Analysis

81319 NONE MOL.TS.197

PMS2 Sequencing

81317 NONE MOL.TS.197

Multiple endocrine neoplasia type 1

MEN1 Deletion/Duplication Analysis

81404 MEN1 MOL.CU.109

MEN1 Sequencing

81405 MEN1 MOL.CU.109

Multiple endocrine neoplasia, type 2A

RET Sequencing

81406 RET MOL.CU.109

RET Targeted Sequencing

81405 RET MOL.CU.109

MUTYH-associated polyposis

MUTYH Deletion/Duplication Analysis

81479 MUTYH MOL.TS.206

MUTYH Sequencing

81406 MUTYH MOL.TS.206

© eviCore healthcare. All Rights Reserved. 18 of 20400 Buckwalter Place Boulevard, Bluffton, SC 29910 (800) 918-8924 www.eviCore.com

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Lab Management Guidelines v2.0.2019

Condition Test Name CPT Claim Code Reimbursement

Neurofibromatosis type 1

NF1 Deletion/Duplication Analysis

81479 NF1 MOL.CU.109

NF1 Sequencing

81408 NF1 MOL.CU.109

Peutz-Jeghers syndrome

STK11 Deletion/Duplication Analysis

81404 STK11 MOL.TS.216

STK11 Sequencing

81405 STK11 MOL.TS.216

Tumor predisposition syndrome

BAP1 Deletion/Duplication Analysis

81479 BAP1DD Not reimbursed

BAP1 Sequencing

81479 BAP1SEQ Not reimbursed

Unknown phenotype

CHEK1 Deletion/Duplication Analysis

81479 CHEK1DD Not reimbursed

CHEK1 Sequencing

81479 CHEK1SEQ Not reimbursed

RAD51B Deletion/Duplication Analysis

81479 RAD51BDD Not reimbursed

RAD51B Sequencing

81479 RAD51BSEQ Not reimbursed

von Hippel-Lindau syndrome

VHL Deletion/Duplication Analysis

81403 VHL MOL.TS.233

VHL Sequencing

81404 VHL MOL.TS.233

Not reimbursed

Gene testing is not reimbursed strictly for hereditary cancer indications. In general, this category applies to genes that have only a low to moderate impact on cancer risk (compared to high penetrance cancer syndrome-causing genes) and no clear management guidelines associated with identifying a mutation.

© eviCore healthcare. All Rights Reserved. 19 of 20400 Buckwalter Place Boulevard, Bluffton, SC 29910 (800) 918-8924 www.eviCore.com

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Lab Management Guidelines v2.0.2019

References

Introduction

These references are cited in this guideline.

1. National Cancer Institute. Fact Sheets: Genetic Testing for Hereditary Cancer Syndromes (Reviewed April 11, 2013). Available at: http://www.cancer.gov/about-cancer/causes-prevention/genetics/genetic-testing-fact-sheet

2. Hampel H et al. A practice guideline from the American College of Medical Genetics and Genomics and the National Society of Genetic Counselors: referral indications for cancer predisposition assessment. Gen et Med. 2015; 17(1):70-87. Available at: https://www.acmg.net/docs/gim2014147a.pdf

3. National Comprehensive Cancer Network. Genetic/Familial High-Risk Assessment: Breast and Ovarian. Version 1.2018. Available at: http://www.nccn.org/professionals/physician_gls/pdf/genetics_screening.pdf

4. National Comprehensive Cancer Network. Genetic/Familial High-Risk Assessment: Colorectal. Version 1.2016. Available at: https://www.nccn.org/professionals/physician_gls/pdf/genetics_colon.pdf

5. ACMG Board of Directors. Points to consider in the clinical application of genomic sequencing. Genet Med. 2012 Aug;14(8):759-61.

© eviCore healthcare. All Rights Reserved. 20 of 20400 Buckwalter Place Boulevard, Bluffton, SC 29910 (800) 918-8924 www.eviCore.com

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