hpc at hcc jun wang outline of workshop2 familiar with linux file system familiar with shell...
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HPC at HCC Jun Wang Familiar with BASH Shell environmentTRANSCRIPT
HPC at HCCJun Wang
hcc.unl.edu
Outline of Workshop2
Familiar with Linux file system
Familiar with Shell environment
Familiar with module command
Familiar with queuing system
How to submit a serial job
How to submit a MPI parallel job
HPC at HCCJun Wang
hcc.unl.edu
Familiar with Linux file systemBasic File System Structure Basic File System Partitions
On tusker and sandhills:$HOME (/home) is read-only on computing nodes, 10 GB space/group, daily backup$WORK (/work) is writable on all nodes, 50 TB space/group, no backup
HPC at HCCJun Wang
hcc.unl.edu
Familiar with BASH Shell environment
HPC at HCCJun Wang
hcc.unl.edu
Familiar with module command
HPC at HCCJun Wang
hcc.unl.edu
Familiar with module command
HPC at HCCJun Wang
hcc.unl.edu
Familiar with queuing system-PBS
HPC at HCCJun Wang
hcc.unl.edu
Familiar with queuing system-SLURM
HPC at HCCJun Wang
hcc.unl.edu
How to submit a serial job
HPC at HCCJun Wang
hcc.unl.edu
How to submit a serial job
HPC at HCCJun Wang
hcc.unl.edu
How to submit a MPI parallel job
HPC at HCCJun Wang
hcc.unl.edu
How to submit a MPI parallel job
HPC at HCCJun Wang
hcc.unl.edu
More useful SLURM commands“sinfo” : Check available partitions and their status
HPC at HCCJun Wang
hcc.unl.edu
More useful SLURM commands“scontrol show job YourJobID”: Check details of a specific job
HPC at HCCJun Wang
hcc.unl.edu
How to run Gaussian09How to compile and run GAMESS
How to compile and run GROMACS
Thank You!
To be continued: