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Wood Tracking Project in Indonesia: Diospyros celebica in Sulawesi Presented by: A Research Team of IPB, WRI, UNSYIAH & FOERDIA IAWA-IUFRO & GTTN-IAWA INTERNATIONAL SYMPOSIUM, CHINA, 2019

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Page 1: IAWA-IUFRO & GTTN-IAWA INTERNATIONAL SYMPOSIUM, CHINA ... Iskandar … · celebica Bakh.) Dry Wood Samples Collected Using Pickering Punch . Objective To develop the most efficient

Wood Tracking Project in Indonesia:

Diospyros celebica in Sulawesi

Presented by: A Research Team of IPB, WRI, UNSYIAH & FOERDIA

IAWA-IUFRO & GTTN-IAWA INTERNATIONAL SYMPOSIUM, CHINA, 2019

Page 2: IAWA-IUFRO & GTTN-IAWA INTERNATIONAL SYMPOSIUM, CHINA ... Iskandar … · celebica Bakh.) Dry Wood Samples Collected Using Pickering Punch . Objective To develop the most efficient

Introduction Progress – SFM Certification

Progress of PHPL (Management of Sustainable Production Forest) and SLK (Certification of Timber Legality) certification, as of December 2017 (DJPHPL-MoEF, 2018)

Page 3: IAWA-IUFRO & GTTN-IAWA INTERNATIONAL SYMPOSIUM, CHINA ... Iskandar … · celebica Bakh.) Dry Wood Samples Collected Using Pickering Punch . Objective To develop the most efficient

Introduction Timber Legality System - SVLK

Source: Maryudi (2016)

Page 4: IAWA-IUFRO & GTTN-IAWA INTERNATIONAL SYMPOSIUM, CHINA ... Iskandar … · celebica Bakh.) Dry Wood Samples Collected Using Pickering Punch . Objective To develop the most efficient

Introduction

Timber trade of

Ebenaceae

23 commercial

species

6 luxury woods species

1 endemic species

Diospyros celebica (Ebony)

Djarwanto et al. 2017

Page 5: IAWA-IUFRO & GTTN-IAWA INTERNATIONAL SYMPOSIUM, CHINA ... Iskandar … · celebica Bakh.) Dry Wood Samples Collected Using Pickering Punch . Objective To develop the most efficient

Introduction • Endemic to Sulawesi Island (South

Sulawesi, West Sulawesi, Central Sulawesi and North Sulawesi)

• Slow growing species

•Vulnerable species (IUCN 2019)

• Timber for carving, inlay, furniture and musical instruments

• Problem: Illegal logging

Cross Section Trunk

Illegal Wood Log

Page 6: IAWA-IUFRO & GTTN-IAWA INTERNATIONAL SYMPOSIUM, CHINA ... Iskandar … · celebica Bakh.) Dry Wood Samples Collected Using Pickering Punch . Objective To develop the most efficient

How to prevent the Illegal logging?

What can be done?

Research Questions

Page 7: IAWA-IUFRO & GTTN-IAWA INTERNATIONAL SYMPOSIUM, CHINA ... Iskandar … · celebica Bakh.) Dry Wood Samples Collected Using Pickering Punch . Objective To develop the most efficient

Questions • Where are the sample collection sites? • How to get a samples?

Wood Sample

Collection

DNA Analysis

Wood Anatomy Analysis

Isotope Analysis

Chemical Compound

Analysis

Solution: Wood Tracking

Page 8: IAWA-IUFRO & GTTN-IAWA INTERNATIONAL SYMPOSIUM, CHINA ... Iskandar … · celebica Bakh.) Dry Wood Samples Collected Using Pickering Punch . Objective To develop the most efficient

•Main objective: To setting up a reference data building pipeline for DNA of commercial timber species, Diospyros celebica Bakh. (Ebony)

•Specific objectives: To collect physical timber reference material and extract its associated DNA for the species Diospyros celebica Bakh. (Ebony).

Objectives

Page 9: IAWA-IUFRO & GTTN-IAWA INTERNATIONAL SYMPOSIUM, CHINA ... Iskandar … · celebica Bakh.) Dry Wood Samples Collected Using Pickering Punch . Objective To develop the most efficient

Activity#1: Wood Collection (Concentrated Species:

Diospyros celebica) in Sulawesi

Page 10: IAWA-IUFRO & GTTN-IAWA INTERNATIONAL SYMPOSIUM, CHINA ... Iskandar … · celebica Bakh.) Dry Wood Samples Collected Using Pickering Punch . Objective To develop the most efficient

Objective

To prepare the necessary permits and update the current distribution of

Diospyros celebica in Sulawesi

Page 11: IAWA-IUFRO & GTTN-IAWA INTERNATIONAL SYMPOSIUM, CHINA ... Iskandar … · celebica Bakh.) Dry Wood Samples Collected Using Pickering Punch . Objective To develop the most efficient

16 Sites 20 Individual/site Total sample n= 320

No Province Regency Sub-district Sampling Sites

1 South Sulawesi Maros Batimurung Bulusaraung National Park

Hasanuddin University Teaching Forest

Barru Barru Coppo Village

Sidenreng

Rappang

(Sidrap)

Pituriase Tana Toro Protection Forest

Gowa Parangleo Bellabori

Luwu Timur Mangkutana Ponda-Ponda Nature Reserve

Mangkutana Kalaena Nature Reserve

Mangkutana Mango Lembo Village

Mangkutana Pegunungan Faruhumpeni Nature Reserve

Luwu Larompong Temboe Education Forest and Tourism

Bone Ulaweng Cani Sirenreng Nature Park

2 West Sulawesi Mamuju Papalang Batu Papang Village

Papalang Palado

3 Central

Sulawesi

Marowali Lembo Wawopada Village

Parigi Moutong Sausu Sausu Village

Pangi Binangga Nature Reserve

Poso Poso Pesisir Peawa Oti Montane Forest

Donggala Gunung Sojol Nature Reserve

D. celebica Wood Sampling Sites

Page 12: IAWA-IUFRO & GTTN-IAWA INTERNATIONAL SYMPOSIUM, CHINA ... Iskandar … · celebica Bakh.) Dry Wood Samples Collected Using Pickering Punch . Objective To develop the most efficient

Research & Collection Permits

Page 13: IAWA-IUFRO & GTTN-IAWA INTERNATIONAL SYMPOSIUM, CHINA ... Iskandar … · celebica Bakh.) Dry Wood Samples Collected Using Pickering Punch . Objective To develop the most efficient

Field Work: GPS, Tree Measurement

Page 14: IAWA-IUFRO & GTTN-IAWA INTERNATIONAL SYMPOSIUM, CHINA ... Iskandar … · celebica Bakh.) Dry Wood Samples Collected Using Pickering Punch . Objective To develop the most efficient

Field Works: Herbarium Collection

Page 15: IAWA-IUFRO & GTTN-IAWA INTERNATIONAL SYMPOSIUM, CHINA ... Iskandar … · celebica Bakh.) Dry Wood Samples Collected Using Pickering Punch . Objective To develop the most efficient

Field Works: Core Wood Collection

Page 16: IAWA-IUFRO & GTTN-IAWA INTERNATIONAL SYMPOSIUM, CHINA ... Iskandar … · celebica Bakh.) Dry Wood Samples Collected Using Pickering Punch . Objective To develop the most efficient

Field Works: Leaf Collection

Page 17: IAWA-IUFRO & GTTN-IAWA INTERNATIONAL SYMPOSIUM, CHINA ... Iskandar … · celebica Bakh.) Dry Wood Samples Collected Using Pickering Punch . Objective To develop the most efficient

Lab Work: Lab Work: Wood Anatomical Structure Analysis

Xylarium Bogoriense

Page 18: IAWA-IUFRO & GTTN-IAWA INTERNATIONAL SYMPOSIUM, CHINA ... Iskandar … · celebica Bakh.) Dry Wood Samples Collected Using Pickering Punch . Objective To develop the most efficient

Activity#2: DNA Extraction from Ebony (Diospyros

celebica Bakh.) Dry Wood Samples Collected Using Pickering Punch

Page 19: IAWA-IUFRO & GTTN-IAWA INTERNATIONAL SYMPOSIUM, CHINA ... Iskandar … · celebica Bakh.) Dry Wood Samples Collected Using Pickering Punch . Objective To develop the most efficient

Objective

To develop the most efficient method of obtaining DNA from tissues of dry ebony

wood, which collected using Pickering Punch tool.

Page 20: IAWA-IUFRO & GTTN-IAWA INTERNATIONAL SYMPOSIUM, CHINA ... Iskandar … · celebica Bakh.) Dry Wood Samples Collected Using Pickering Punch . Objective To develop the most efficient

Figure 1. The workflow of ebony wood core extraction using Pickering Punch.

1. Core Wood Extraction from Tree Stand Using

Pickering Punch (Agroisolab, UK)

Materials & Methods

Page 21: IAWA-IUFRO & GTTN-IAWA INTERNATIONAL SYMPOSIUM, CHINA ... Iskandar … · celebica Bakh.) Dry Wood Samples Collected Using Pickering Punch . Objective To develop the most efficient

Core Wood Sample Collection

Page 22: IAWA-IUFRO & GTTN-IAWA INTERNATIONAL SYMPOSIUM, CHINA ... Iskandar … · celebica Bakh.) Dry Wood Samples Collected Using Pickering Punch . Objective To develop the most efficient

Figure 2. The workflow of ebony dry wood DNA extraction.

2. Genomics DNA Extraction from Dry Wood Using

CTAB Method

+ Dremel Grinding

Dremel + Manual Grinding

+

Materials & Methods

Page 23: IAWA-IUFRO & GTTN-IAWA INTERNATIONAL SYMPOSIUM, CHINA ... Iskandar … · celebica Bakh.) Dry Wood Samples Collected Using Pickering Punch . Objective To develop the most efficient

Tree No. Homogenization Method DNA Conc. (ng/µl) Purity (A260/280)

1 Dremel 215.25 2.532

Dremel+manual grinding 335.60 2.011

2 Dremel 166.50 2.595

Dremel+manual grinding 242.75 2.104

Tree No. Homogenization Method DNA Conc. (ng/µl) Purity (A260/280)

1 Dremel 215.25 2.532

Dremel+manual grinding 335.60 2.011

2 Dremel 166.50 2.595

Dremel+manual grinding 242.75 2.104

Table 1 Presents concentrations and quality of the obtained DNA using two different homogenization methods.

Results & Discussion

Page 24: IAWA-IUFRO & GTTN-IAWA INTERNATIONAL SYMPOSIUM, CHINA ... Iskandar … · celebica Bakh.) Dry Wood Samples Collected Using Pickering Punch . Objective To develop the most efficient

• The first collection of samples has just been carried out in Sulawesi comprising herbarium, leaves and core wood.

• Modification of combined the use of “dremel + manual grinding” for sample homogenization proved to be reliable and it can be recommended as a good alternative when extracting DNA from dry wood.

Closing Remarks

Page 25: IAWA-IUFRO & GTTN-IAWA INTERNATIONAL SYMPOSIUM, CHINA ... Iskandar … · celebica Bakh.) Dry Wood Samples Collected Using Pickering Punch . Objective To develop the most efficient

Thank you Iskandar Z. Siregar, Fifi Gus Dwiyanti, Essy Harnelly, Muhammad Majiidu, Lina

Karlinasari, Ratih Damayanti, M Rafi, Meaghan Parker-Forney