icrisat 2 march 2016ksiconnect.icrisat.org/wp-content/uploads/2016/03/01032016.pdf · u ni te d s...
TRANSCRIPT
• Wilfred Vermerris • Department of Microbiology and Cell Science-IFAS
• University of Florida Genetics Institute
Sustainable production of
fuels and chemicals
from sorghum
ICRISAT 2 March 2016
Agriculture’s Challenge
ENERGY
POPULATION CLIMATE
www.nasa.gov
Florida as a test case for sustainable bioenergy production
• Sunny and warm climate plus long
growing season conducive to crop
production
• High pest and disease pressure
• Much of the Florida peninsula can be
classified as marginal land
• Low organic matter content
• Low water retention capacity
• Limitations on use of irrigation,
pesticides and fertilizers
Climate change and the need to avoid competition with food production will require the development of reliable crop production systems under increasingly challenging conditions
Plant
Shut-Down
Maintenance
Sweet sorghum can extend the processing window of
sugarcane
Jan Feb Mar April May June July Aug Sept Oct Nov Dec
Sweet Sorghum
Planting
S.S. Harvest
1st Crop
S.S. Harvest
2nd Crop Biofuel Cane Biofuel Cane
Sweet Sorghum
Planting
Planting and harvest logistics for a biorefinery that
processes sugarcane and sweet sorghum
United States Department of Agriculture
Topics
Animal HealthBiotechnologyEmployment ResourcesEnergyEnvironment and Natural ResourcesEmergency Preparedness andResponseFarm BillFood and NutritionFood SafetyForestryHomeland SecurityLaws and RegulationsMarketing and TradeOutreachPlant HealthResearch and ScienceRural and Community DevelopmentTravel and Recreation
Programs and Services
ASSISTING RURAL COMMUNITIES
BroadbandGrants and LoansDisaster AssistanceInsurance Programs
FOOD AND NUTRITION
SNAPWICFood SecurityChild Nutrition ProgramsNational Organic Program
CONSERVATION
Restoration and ConservationEnvironmental Markets
Next-generation sweet sorghums: Sustainable production of
fuels and chemicals from juice and bagasse
pentoses
fuels
fuels
chemicals
chemicals (e.g. D-and L-lactate)
CO2
ferm
en
tation
ferm
en
tatio
n
pre
treatm
ent
hexoses
chemicals
CBP
Sweet sorghum
United States Department of Agriculture
Topics
Animal HealthBiotechnologyEmployment ResourcesEnergyEnvironment and Natural ResourcesEmergency Preparedness andResponseFarm BillFood and NutritionFood SafetyForestryHomeland SecurityLaws and RegulationsMarketing and TradeOutreachPlant HealthResearch and ScienceRural and Community DevelopmentTravel and Recreation
Programs and Services
ASSISTING RURAL COMMUNITIES
BroadbandGrants and LoansDisaster AssistanceInsurance Programs
FOOD AND NUTRITION
SNAPWICFood SecurityChild Nutrition ProgramsNational Organic Program
CONSERVATION
Restoration and ConservationEnvironmental Markets
Next-generation sweet sorghums: Sustainable production of
fuels and chemicals from juice and bagasse
pentoses fuels
chemicals
fuels
chemicals (e.g. D-and L-lactate)
CO2
ferm
en
tation
ferm
en
tatio
n
pre
treatm
ent
hexoses
lignin
nanotubes
chemicals
heat
CBP
Sweet sorghum
enhanced
plastics
jet fuel
Sweet sorghum in Florida…..
• Commercial sorghum breeding programs have
traditionally been based in Texas and the Great Plains
– Primary focus has been on grain and forage
sorghums
• Sweet sorghum breeding programs have traditionally
been based in MS, TN, KY, later also TX
• Use of existing sweet sorghum germplasm in Florida
does not generate the yields reported in the regions
where the germplasm originated
– Pests and diseases prevalent in the region
– Low-fertility soils, low water retention capacity, storms
• The UF sorghum breeding program is focusing on developing regionally adapted sweet sorghums that give high yields with limited inputs
Our number 1 target: Anthracnose resistance
• Colletotrichum sublineolum
– Fungal pathogen
– Thrives in humid
conditions
• Major problem in
southeastern USA
– Infects all aerial parts of
sorghum
– 70% yield reduction
Source: http://www.plantwise.org
/KnowledgeBank/Datasheet.aspx
Source: Crouch and Beirn, Fungal Diversity, 2009
Adapting sorghum to Florida
Commercial Improved UF cultivars
Dry weight yields: 15-20 t/ha
Mapping anthracnose resistance loci
• Bk7
– Florida inbred line
– Anthracnose resistant
– Unknown resistance mechanism
• Early Hegari-Sart
– Anthracnose
susceptible
• Biparental mapping population
– 135 lines
– F4 and F5
Bk7 Early Hegari-Sart
Terry Felderhoff
Mapping population
• Selection of inbred parents with
contrasting phenotypes
– Cross parents
– Heterozygous F1 selfed
– Multiple F2 progeny grown
– Continued selfing within lines
– 135 F4 and F5 lines
• Increased recombination
– Genetic mosaics of parental alleles,
and mostly homozygous
• Observe disease phenotypes among
lines within the population
– Replicate across years and locations
• Identify resistance loci by association
Genotyping by Sequencing
• Truncated genome sequencing
• Fast, inexpensive, data rich
• Single Nucleotide Polymorphisms (SNPs) determined
base on sequence comparisons among mapped
fragments derived from the parents
• GBS performed at Cornell University
Source: http://cbsu.tc.cornell.edu/lab/doc/GBS_overview_20111028.pdf
The raw GBS data are dirty!
A custom filtering procedure:
Terry Felderhoff
Determining the association between
SNP markers and disease resistance
• Determine distribution of marker alleles across infected and
uninfected lines
– Fisher’s exact test, -log10 of p-value
– H0: no difference in frequency of allele between contrasting
disease phenotypes
– Ha: high frequency of Bk7 alleles in resistant plants
– False discovery rate (FDR) with α=0.05 used as threshold
Marker Allele
Early Hegari Bk7
Disease
Phenotype
Resistant a b a+b
Susceptible c d c+d
a+c b+d
a+b+c+d
=n
Terry Felderhoff
Association analysis
1 3 2 4 5 6 7 8 9 10
(Too many) Candidate genes….
• Chromosome 7 locus
– No reported anthracnose resistance loci in literature
– 44.9 Mbp containing 740 transcripts
• Chromosome 9 locus
– Known Cs1B resistance gene on chromosome 9 • 1.8 Mb from closest edge of QTL
• Multiple recombination events between QTL and Cs1B
– 3.2 Mb containing 342 transcripts
• Similarity search of transcripts with BLASTX followed by BLAST2GO ontology analysis
– Chrom 7 locus has 46 candidate genes
– Chrom 9 locus has 39 candidate genes
Fine-mapping resistance loci
× Susceptible parent
Resistant parent
Resistant cultivar 1
• The five newly released sweet sorghum cultivars share the
anthracnose resistant parent ‘Bk7’ in their pedigree
• Selection criteria for these sweet sorghums included anthracnose
resistance
• Seven generations of inbreeding will have increased the probability of
recombination events in and around the QTL
×
F7
P
Chr 9 QTL
Resistant cultivar 2
Resistant cultivar 3
Resistant cultivar 4
Inbreeding with selection for resistance
Validating candidate genes
• As a result of the fine mapping, the resistance QTL
was reduced from 3.2 Mb to 0.6 Mb, with just 6
candidate resistance genes
• Virus-induced gene silencing will be used to validate
the role of these genes in anthracnose resistance
Brome Mosaic Virus
RNA1
RNA2
RNA3
Tim Nelson, Samuel Roberts Noble Foundation
Silencing of resistance gene
Colletotrichum conidia
Resistant line
Improving biomass conversion with
brown midrib mutants • Generated in the 70’s at Purdue University via chemical
mutagenesis – 19 mutants
• Nine spontaneous bmr mutants discovered later on
• Initially used as forage because of improved intake and
palatability
Brown midrib sorghums
• What is the impact of the various bmr
mutations on cell wall composition and
biomass conversion?
• If we clone the most ‘valuable’ bmr
genes, we will not only generate
convenient molecular markers, but also
learn something about biochemical
targets
• Ultimately: enzyme engineering based
on detailed structural models
Saballos et al. (2008) Bioenerg. Res. 1: 198
OGO
OCH3S
O
HO
OH
OH
OH
OH3CO
G
OG OH
OH
OCH3
G
O
OCH3
G HO
OH
H3CO
S
O
GOH
HO
O
O
O
G
O
OCH3
S
HO OH
OH
HO
O
OCH3
O
H3CO G
OHO
HO
OCH3
H3CO
OCH3H3CO
OCH3
OCH3
O
H3CO
G
OH
H S G p-hydroxyphenyl guaiacyl syringyl
COOH COOH
NH2
OH
OH
OH OH OH
OH
OCH3 H3CO
OH
H2 COH
OH
OCH3 H3CO
H2 COH
OH
H2 COH
O O O
OCS-CoA OCS-CoA
OCH3
OCH3
OCH3
bmr12
bmr6
bmr2
0
5
10
15
20
25
N-bmr 2 N-bmr 3 N6-bmr N-bmr 12 N-bmr 19
Kla
so
n l
ign
in (
mg
/g )
Wt-bmr isolines
Wt bmr
Klason lignin (Purdue collection)
The bmr mutations reduce lignin content by ~15-20%
Saballos et al. (2008) Bioenerg. Res. 1: 198
Unpretreated
Pretreated
(dilute sulfuric acid)
Enzymatic saccharification of stover (Purdue)
Saballos et al. (2008) Bioenerg. Res. 1: 198
Glucose yields of sorghum stover from bmr and wild-type lines without and
with pretreatment after 48 h of enzymatic saccharification (60 FPU/g cellulose)
Lignin content vs. subunit composition
Lignin content vs. glucose yield (USDA)
• Lignin content
alone does not
explain variation in
glucose yield
• The S/G ratio
appears to
influence glucose
yield following a
threshold model
• The threshold lies
somewhere
between 0.08 and
0.4
Kla
son lig
nin
(m
g/g
)
S/G 0.63 0.03
Glu
cose y
ield
(m
g/g
)
0
50
100
150
200
250
300
BTx623 bmr12-ref bmr12-30 bmr12-34 bmr12-35
0
5
10
15
20
25
BTx623 bmr12-ref bmr12-30 bmr12-34 bmr12-35
0.07 0.08 0.42
c c b b
b
ab a
c b
bc
Sattler et al. (2012) BioEnerg. Res.
Plant Physiology 165: 1440 (2014)
s-trans s-cis
productive non-productive
s-trans s-cis
productive non-productive
H3CO
Can we engineer COMT for broader or
more specific substrate specificity?
• Tailor lignin subunit composition
• Minimize negative impacts on plant
growth
Substrate inhibition of COMT
Substrate orientation
matters
s-trans s-cis
productive non-productive
The high rotational energy associated with the conformation of the propenal side chain prevents the spontaneous switch of the non-productive isomer to the productive isomer
Can we use these structural features to engineer COMT for broader or more specific substrate specificity without inhibition? • Tailor lignin subunit composition • Minimize negative impacts on plant
growth
Industrial-scale processing
Industrial-scale processing
University of Florida Stan Mayfield Biorefinery
• L+SScF
– Liquefaction through
phosphoric acid/ steam
pretreatment (190C, 5 min)
and saccharification
• 3 x 10,000 Gal fermentors
Techno-economic analysis
Assumptions:
2.5% enzyme, $1.00 kg enzyme, $40/ ton dry bagasse, 0.24 g EtOH/g DW I. Nieves/ R. van Rijn
‘Smart delivery’ of drugs or DNA
• Use of carriers that target specific organs or tissues
– Viral vectors (DNA) – Adeno associated virus
– Carbon nanotubes (drugs, DNA) - $500/gram
• Benefits:
– Lower dose, reduced side effects
– Reduced degradation of therapeutics
• Challenges
– Viruses: immunogenic
– CNTs: cytotoxic
lbl.gov sciencephoto.com
gaia3d.co.uk
Lignin nanotubes (LNTs)
Lignin base-layer
Deposition of DHP liner
Dissolution of membrane
membrane
109 pores cm-2
109 nanotubes cm-2
Caicedo et al. (2012) Nanotechnology 23: 105605
Nanotubes Nanowires
200 nm 200 nm
1 µm 1 µm
COOH
OH
COOH
OH
OCH3
TEM
SEM
Caicedo et al. (2012)
ferulic acid : p-coumaric acid
5 : 1
ferulic acid : p-coumaric acid
1 : 5
Lignin nanotubes have low cytotoxicity
Carbon nanotubes: 50% cell loss at 5-10 mg/mL (Pantarotto et al., 2004)
Thioglycolic acid lignin NaOH lignin
Ten et al. (2014) Biomacromolecules
Pine TGA LNTs
15 μm
Confocal microscope images showing the nuclei of human
HeLa cells in cell culture.
Pine NaOH LNTs
LNT-mediated transfection of HeLa cells with GFP gene
• Gene expression levels vary
as a function of lignin source
and isolation method
Blank (-) PEI (+)
Sorghum-KL
Poplar-KL
Poplar-TGA 100 x magnification 1.4 mg LNTs per well
Mechanism of DNA uptake in the cell?
endocytosis endocytosis
MAGNET Streptavidin-paramagnetic bead
Biotinylated DNA
Is there a physical interaction between LNT
and DNA?
Native DNA
LNT
1 μm bead
Biotinylated DNA
Ten et al. (2014) Biomacromolecules
Delivery of therapeutic agents
Therapeutic agent
Ligand for cell-specific receptor Labile bond
Labile bond
So what are the prospects for sweet sorghum?
• There is plenty of land available to produce bioenergy
without competing with food production
– Requires adapted germplasm
• Sweet sorghum cultivars and hybrids are/will be
available, even for regions where sweet sorghum is a
new crop
– brown midrib hybrid sweet sorghums with
anthracnose resistance
– Plant breeding can benefit from and contribute to
genomics-assisted crop improvement methods
– Structural biology and genome editing as tools to
redesign metabolic pathways
• The bioprocessing technology is available to use both
the juice and the bagasse as a source of fermentable
sugars for fuels and chemicals
Challenges for biorefineries in the US
• The original three drivers for renewable fuels were
– Energy independence (control of supplies)
– Finite supplies of petroleum
– Mitigation of climate change
• Hydraulic fracking in the US effectively took care of
the first two drivers
• The prices of oil and natural gas are at record lows
– Difficult for biofuels to compete
This has had a major impact on the construction of new biorefineries We need a level playing field (tax policies) and a mechanism to reward sustainably produced biofuels from home-grown crops
Acknowledgements
United States Department of Agriculture
Topics
Animal HealthBiotechnologyEmployment ResourcesEnergyEnvironment and Natural ResourcesEmergency Preparedness andResponseFarm BillFood and NutritionFood SafetyForestryHomeland SecurityLaws and RegulationsMarketing and TradeOutreachPlant HealthResearch and ScienceRural and Community DevelopmentTravel and Recreation
Programs and Services
ASSISTING RURAL COMMUNITIES
BroadbandGrants and LoansDisaster AssistanceInsurance Programs
FOOD AND NUTRITION
SNAPWICFood SecurityChild Nutrition ProgramsNational Organic Program
CONSERVATION
Restoration and ConservationEnvironmental Markets
ChulHee Kang (WSU)
Scott Sattler (USDA-ARS)
John Ralph (UWisc)
Hugo Cuevas (USDA-ARS)
Terry Felderhoff
Alejandra Abril
Ji Wang
Ana Saballos
Rick van Rijn
Sanyukta Shukla
John Erickson
Lonnie Ingram
Amelia Dempere
Julene Tong
KT Shanmugam
Jim Preston
Randy Powell
Main features of LNTs
• Ability to customize
– Optical properties
– Dimensions (tubes vs. rods)
– Nano-mechanical properties
– Site of delivery: cytosol vs. nucleus
• Physical and chemical properties vary as a
function of lignin source
– Can be tailored via genetic approaches!
• Potential as a high-value co-product from a
biorefinery
Sorghum: A versatile C4 grass
• Annual, seed-propagated, naturally self pollinating
• Originated in Africa, cultivated across the globe
• Genetically diverse
• Robust: adaptable to many different conditions
– Tolerates hot and dry environments
– Limited input requirements
• Used for the production of grain, sugars and biomass
• Biomass:
– 40% cellulose
– 30% hemicellulose (glucuronoarabinoxylans >
xyloglucans)
– 20% lignin: H (3%), G (59%), S (38%)
– 10% pectin, waxes, ‘extractives’, minerals
Production of fuels and chemicals from
sweet sorghum in Florida
• Tall plants that accumulate soluble sugars
in the stem juice (15-22%)
• Stress tolerant (drought, heat) and limited
input requirements compared to sugarcane
• Minimal competition with food production
• Compatible with sugarcane production in
South Florida
• Ideal crop for transition from sugar-based to
lignocellulosic fuels and chemicals
Cultivar breeding strategy: Pedigree method
F5: estimate sugar yield; compare
performance against checks; look
for homogeneity; bulk seed
F4: as F3 plus select for sugar
based on destructive sampling of
sibs
F3: select 5-10 individuals among
and within families for biomass,
maturity, disease resistance
F2: select 5-20 biggest and cleanest
plants
Parents: high-sugar x other trait
400 F2 plants
5-20 F3 families
1-5 F5 families
5-10 F4 families
Each year we evaluate 10-20 sweet
sorghums from around the world
Release top performers
F6: replicated yield trials
(two years, three locations) 1-3 F6 families
Sweet sorghum hybrids • Hybrids are the product of a cross between two different inbred
parents; the progeny is planted and harvested
• Benefits of hybrids:
– You need the parents to make more seed (happy breeder)
– Potential for superior yield
– Seed production is combine-compatible (maybe….)
• Challenge 1: Since sorghum is a self-pollinating species, you
need a male-sterile female ‘A-line’ to ensure cross-pollination
• Challenge 2: The only way to propagate the A-line is to cross it
with a fertile B-line that is otherwise genetically identical
• Challenge 3: In order to get fertile hybrid seed (necessary for
sugar accumulation!), a fertility-restoring ‘R-line’ needs to be
available as a pollen donor
Seed
Parent Maintaine
r
Pollinator Seed
Parent Maintaine
r
Pollinator Seed
Parent Maintaine
r
Pollinator
Seed
Parent Maintaine
r
Pollinator
A B R
Sanyukta Shukla
Hybrid seed
produced from
fertilizing A-line
with R-pollen
Combine-compatible hybrid seed production
More challenges:
• Sugar accumulation is an additive trait
– both hybrid parents need to be sweet in order to
produce sweet offspring
• Sugar yield is the product of sugar concentration and
juice volume
– big stalks contain more juice
• If we select the parents carefully based on their dwarf
genotype, we can get tall offspring from short, combine
compatible parent lines
• But given that all known sweet sorghums are tall, is
height a prerequisite for being sweet?
• Four independent loci
– dw1, dw2, dw3, dw4
• Recessive mutations that
reduce height in an additive
fashion by ~ 40 cm per
locus
• Height reduction enables
combine harvest of
sorghum grain and
improves harvest index
From: Quinby 1967
Dwarf genes control height in sorghum
Tall sorghums tend to be sweeter…..
y = 0.017x + 8.4817 R² = 0.222
0
2
4
6
8
10
12
14
16
18
20
0 50 100 150 200 250 300 350 400
Sugar concentration as a function of plant height °
Brix
Plant height (cm)
Data based on 250 F3 families derived from grain x sweet sorghum
Ana Saballos, Terry Felderhoff, Sanyukta Shukla
But….
Production of combine harvestable hybrid sweet sorghum seed
• Tall sorghums tend to be sweeter than short sorghums, but
short sorghums can be sweet
– Height is not a prerequisite in sweet sorghums
• Good news: It is possible to produce short sweet inbred
parents for hybrid sweet sorghums
• Short, sweet inbred parents for hybrid production under
development:
– 22 R-lines
– 73 B-lines (to be converted to A-lines)
Sanyukta Shukla dw1 dw2 Dw3 Dw4 Dw1 Dw2 dw3 dw4
Dw1 Dw2 Dw3 Dw4
Catalytic mechanism of sorghum COMT
• What is the catalytic mechanism of COMT?
• What determines substrate specificity?
• Can we engineer COMT for broader or more
specific substrate specificity?
– Tailor lignin subunit composition
– Minimize negative impacts on plant growth
• Purify recombinant SbCOMT protein in E. coli
• X-ray crystallography of apo-enzyme and
ternary complex (= with substrate)
• Determine 3D structure of enzyme, including
substrate binding pocket
Green et al. (2014) Plant Physiol.
X-ray crystallography
• GBS: ‘brute force’
– Many markers over entire genome
– Number of samples (in increments of 96 samples)
– Service fee for libraries and sequencing ($35/sample)
– Labor cost for data analysis
• PCR
– Fewer markers, only at loci of interest
– Cost is a function of • Number of samples
• Number of markers
• Primer success rate and specificity
– Labor cost primarily for experiments
GBS vs PCR-based genotyping
A
C
T
A
A customizable model to determine the
most cost-effective genotyping method
Fine-mapping resistance loci
× Backcross Susceptible
parent
Resistant inbred
S
R
R
R
R R
S
S
×
BC1
BC1S1
Bio-functionalization
Figure 7
Figure 7
Can we make a lignin nanotube recognize a target?
Figure 7
Figure 7
Glass slide with Concanavalin A
Figure 7
Figure 7
Glass slide under UV-fluorescence
Functionalized nanotubes Native nanotubes
Caicedo et al. (2012)
Dose-dependent gene expression
100 ng 300 ng 1100 ng
Fixed amount of Pine-TGA LNTs with increasing amounts of plasmid DNA
100 x magnification 1.4 mg LNTs per well
Mechanical properties vary as a function of lignin source
• Nano-indentation: 5 nm
• Measure hardness (H) and
Young’s modulus (E)
0
1
2
3
4
5
6
7
8
0
10
20
30
40
50
60
70
80H (GPa) E (GPa)
United States Department of Agriculture
Topics
Animal HealthBiotechnologyEmployment ResourcesEnergyEnvironment and Natural ResourcesEmergency Preparedness andResponseFarm BillFood and NutritionFood SafetyForestryHomeland SecurityLaws and RegulationsMarketing and TradeOutreachPlant HealthResearch and ScienceRural and Community DevelopmentTravel and Recreation
Programs and Services
ASSISTING RURAL COMMUNITIES
BroadbandGrants and LoansDisaster AssistanceInsurance Programs
FOOD AND NUTRITION
SNAPWICFood SecurityChild Nutrition ProgramsNational Organic Program
CONSERVATION
Restoration and ConservationEnvironmental Markets
Next-generation sweet sorghums: Sustainable production of
fuels and chemicals from juice and bagasse
pentoses
fuels
chemicals (e.g. D-and L-lactate)
fuels
chemicals
CO2
ferm
en
tation
ferm
en
tatio
n
pre
treatm
ent
hexoses
chemicals
CBP
Sweet sorghum
Nanotubes versus nanowires
Pine NaOH LNT
Pine TGA LNT
Pine NaOH LNW
Pine TGA LNW
Entry into the nucleus:
wires versus tubes made of TGA lignin
NUCLEUS
CYTOSOL
TUBE WIRE
Vetenskap SR P1
Closing remarks
• A fully integrated processing scheme for
biomass can generate multiple main products
(fuels, chemicals) as well as waste products
with potential value
• Volume versus value
• Market size
• Local versus global demand
• Cost of production: Lab > Pilot > Industrial
volu
me (
m3)
value ($/m3)
high value, low volume low
va
lue h
igh v
olu
me High value, high volume
Indian consortium
IICT, Hyderabad
ICRISAT, Hyderabad
DSR, Hyderabad
JNTU, Hyderabad
CESS, Hyderabad
IIT-Delhi
IIT-Madras
TNAU, Coimbatore
RVSKVV, Gwalior
Abellon Clean Energy Ltd.,
Ahmedabad*
Hindustan Petroleum
Corp. Ltd., Bangalore*
US consortium University of Florida,
Gainesville, FL
University of Missouri,
Columbia, MO
Virginia Tech, Blacksburg,
VA
Montclair State University,
Montclair, NJ
Texas A&M University,
College Station, TX
Green Technologies, LLC
Gainesville, FL*
Tiger Energy Solutions,
LLC, Columbia, MO*
*Industry partners
US funding: $12 million over 5 years
Technical Objectives
• Improve feedstocks using genomics, breeding tools and identify locally
adapted cultivars, and their optimization for large-scale production
• Develop production logistics and identify soil and environmental criteria to
ensure a commercially successful advanced feedstock production system
Feedstock development and supply (WP1)
Conversion technologies (WP2)
• Develop biocatalysts for production of advanced biofuels and co-products; optimize pretreatment and fermentation processes
• Develop products and applications from biorefinery waste streams that minimize environmental impact of biorefinery operations and maximize the revenues
Sustainability, marketing and policy (WP3)
• Analyze and develop certification protocols and sustainability standards
• Assess energy requirements and emissions, and perform economic analyses
• Undertake supply chain management analysis
Field Studies
• 2013 Live Oak
– 2 reps, natural inoculum
• 2013 Citra
– 3 reps, natural inoculum
• 2015 Live Oak
– 2 reps, cultured inoculum
• Observed during soft
dough stage
Primer Optimization and Marker
Evaluation
66 ° 65° 64° 63° 62°
EH Bk7
EH Bk7 EH Bk7 EH Bk7
• Optimization with temperature-gradient PCR
• PCR performed with parent DNA
– Performed at optimum temperature
– Four out of seven markers able to detect SNP differences
Courtesy of Lauren Stutts
UF Stan Mayfield Biorefinery Pilot Plant
18,000 sq. ft.
3,500 sq. ft.
service labs 8,500 sq. ft. process
6,000 sq. ft.
client space
chiller
Distillation
Phosphoric acid steam
pretreatment
Gravity-assisted removal of
pretreated biomass slurry
Fermentation tanks
Comparison of conversion processes
Corn Steam Cooker
Fermentation + amylase & glucoamylase
Purification
C. Mature Corn to Ethanol Industry
Lignocellulose
cc-Washing
Dilute Acid Hydrolysis
Liquid/solid Separation
Hemicellulose Fermentation
Cellulose +Lignin
Purification
Hemicellulose
Syrup & inhibitors
Hemicellulose Syrup Detox
A. Sulfuric Lignocellulose Process
Lignocellulose Dilute Acid Hydrolysis
Purification Fermentation + cellulase & hemicellulase
B. Phosphoric Lignocellulose Process (goal)
Fermentation Cellulose+ Cellulase
Liquefaction + amylase & glucoamylase
(Zirconium Hydrolyzer)
Side products of hydrolysis (hydrolysate inhibitors) drive process complexity!
(Stainless Steel Hydrolyzer)
(Stainless Steel Cooker)
Gypsum
Co-products
Co-products
CapX
L+SScF Process (eliminates steps) CapX
CapX
Liquefaction + cellulase & hemicellulase
300 to 500 U/mg protein
Cellulase 0.7 U/mg protein
L.O. Ingram