identification of genetic markers for familial subvalvular ... · identification of genetic markers...

1
Identification of genetic markers for familial subvalvular aortic stenosis in Rottweilers Amanda E. Crofton 1 , Eric S. Ontiveros 1 , Kathryn M. Meurs 2 , Danika L. Bannasch 3 , and Joshua A. Stern 1 1. Department of Medicine and Epidemiology, School of Veterinary Medicine, University of California Davis, Davis, CA 2. College of Veterinary Medicine, North Carolina State University, Raleigh, NC 3. Department of Population Health and Reproduction, School of Veterinary Medicine, University of California Davis, Davis, CA Subvalvular aortic stenosis (SAS) is the second most common canine congenital heart defect. 1 A fibrous ridge forms below the aortic valve, the left ventricular outflow tract narrows, and the aortic blood flow velocity increases. Left ventricular pressure overload ensues. 2 Rottweilers are overrepresented in SAS cases. 1 Aortic balloon valvuloplasty does not significantly increase patient lifespan. 3,4 Treatment with beta-adrenergic blockers lowers the patient’s heart rate and increases myocardial perfusion but does not alleviate the stenosis. 2 This study aims to identify a chromosomal region of interest with candidate genes containing SAS-associated variant(s) in Rottweilers. 86 Rottweilers (16 Cases and 70 Controls) Dogs assessed via auscultation to detect murmurs 3- to 5-generation pedigree submitted Control (70) Equivocal (0) Mild (0) Moderate (2) Severe (14) 2-3 mL of venous EDTA blood processed for DNA extraction Samples submitted for genotyping on Illumina 230k CanineHD BeadChip Introduction Hypothesis Results Materials and Methods Subvalvular aortic stenosis (SAS) is a heritable condition in Rottweilers with a single significant region of genome-wide association. Figure 1. A) An illustration of a healthy canine heart with the aortic valve and subvalvular region highlighted. B) A gross pathology image of a heart affected with SAS with the subvalvular ridge/ring highlighted. C) 2D, color (upper image) and spectral (lower image) Doppler echocardiogram images of a dog with severe SAS. Note the turbulent blood flow and high aortic flow velocity. Discussion Acknowledgements References Chromosome 31 contains the SNPs with the highest suggestive association. Candidate genes in the suggestive region include ADAMTS1 and ADAMTS5. Both play a role in cardiac development. ADAMTS5 is expressed in valvular endocardium and in the aortic wall of the left ventricular outflow tract. 5,6 ADAMTS1 and ADAMTS5 degrade versican, a proteoglycan, during heart valve formation. 7 This study is underpowered and requires additional samples to draw statistically significant conclusions. 60 of these dogs assessed via echocardiogram Additive binary model (chi-square) Mixed linear model analysis (EMMAX) Bonferroni correction 1. Buchanan JW. Prevalence of cardiovascular disorders. In: Fox PR, Sisson D, and Moise NS, editors. Textbook of canine and feline cardiology. Principles and clinical practice. 2 ed. Philadelphia: WB Saunders; 1999. pp. 457-70. 2. Oyama MA, Thomas WP. Two-dimensional and M-mode echocardiographic predictors of disease severity in dogs with congenital subaortic stenosis. J Am Anim Hosp Assoc. 2002;38:209-15. 3. Kienle RD, Thomas WP, Pion PD. The natural clinical history of canine congenital subaortic stenosis. J Vet Intern Med. 1994;8:423-31. 4. Meurs KM, Lehmkuhl LB, Bonagura JD. Survival times in dogs with severe subvalvular aortic stenosis treated with balloon valvuloplasty or atenolol. J Am Vet Med Assoc. 2005;227:420-24. 5. Dupuis LE, McCulloch DR, McGarity JD, Bahan A, Wessels A, Weber D, Diminich AM, Nelson CM, Apte SS, Kern CB. Altered versican cleavage in ADAMTS5 deficient mice; a novel etiology of myxomatous valve disease. Dev Biol. 2011;357:152-64. 6. Zhang P, Shen M, Fernandez-Patron C, Kassiri Z. ADAMs family and relatives in cardiovascular physiology and pathology. J Mol Cell Cardiol. 2016;93:186-99. 7. Zhou Z, Rawnsley DR, Goddard LM, Pan W, Cao XJ, Jakus Z, Zheng H, Yang J, Arthur JS, Whitehead KJ, Li D, Zhou B, Garcia BA, Zheng X, Kahn ML. The cerebral cavernous malformation pathway controls cardiac development via regulation of endocardial MEKK3 signaling and KLF expression. Dev Cell. 2015;32:168- 80. Figure 4. A) A Manhattan plot depicting the relative association of each SNP with SAS after EMMAX reduction in population stratification. B) A Q-Q plot demonstrating findings after EMMAX. C) A list of the SNPs with the highest disease association. Figure 3. A pedigree of an SAS-affected Rottweiler family. Figure 5. An SAS-affected Rottweiler puppy. Figure 2. A Rottweiler affected with severe SAS. Dogs categorized by phenotype Pedigrees analyzed to determine mode of inheritance Candidate genes investigated Genome-wide association study (GWAS) via Golden Helix SVS software Location Unadjusted P-value Adjusted P-value Chr_31_19551754 7.83e-06 0.935 Chr_31_20092347 1.79e-05 1 Chr_31_19244149 2.47e-05 1 Chr_31_19257980 2.47e-05 1 Chr_31_20074767 3.06e-05 1 Chr_31_19116278 5.81e-05 1 Chr_31_18264863 6.10e-05 1 A. B. C. 119,526 markers were analyzed. The genomic inflation factor (λ) after EMMAX is 1.02. The red line is the Bonferroni threshold for significance, located at 6.38. The black line is the suggestive association threshold, located at 4.30. The single nucleotide polymorphism (SNP) with the highest suggestive disease association is located on chromosome 31 (p = 7.83e-06). Most parents and grandparents of SAS- affected dogs in Figure 3 are unaffected. Pedigree analysis of SAS- affected Rottweilers supports an autosomal recessive mode of inheritance. A. B. C. Affected Unaffected Equivocal ? ? Unknown

Upload: others

Post on 21-Jun-2020

4 views

Category:

Documents


0 download

TRANSCRIPT

Page 1: Identification of genetic markers for familial subvalvular ... · Identification of genetic markers for familial subvalvular aortic stenosis in Rottweilers Amanda E. Crofton1, Eric

Identification of genetic markers for familialsubvalvular aortic stenosis in Rottweilers

Amanda E. Crofton1, Eric S. Ontiveros1, Kathryn M. Meurs2,Danika L. Bannasch3, and Joshua A. Stern1

1. Department of Medicine and Epidemiology, School of Veterinary Medicine, University of California Davis, Davis, CA 2. College of Veterinary Medicine, North Carolina

State University, Raleigh, NC 3. Department of Population Health and Reproduction, School of Veterinary Medicine, University of California Davis, Davis, CA

• Subvalvular aortic stenosis (SAS) is the second most common canine congenital heart defect.1

• A fibrous ridge forms below the aortic valve, the left ventricular outflow tract narrows, and the aortic blood flow velocity increases. Left ventricular pressure overload ensues.2

• Rottweilers are overrepresented in SAS cases.1

• Aortic balloon valvuloplasty does not significantly increase patient lifespan.3,4

• Treatment with beta-adrenergic blockers lowers the patient’s heart rate and increases myocardial perfusion but does not alleviate the stenosis.2

• This study aims to identify a chromosomal region of interest with candidate genes containing SAS-associated variant(s) in Rottweilers.

86 Rottweilers (16 Cases and 70 Controls)

Dogs assessedvia auscultation to

detect murmurs

3- to 5-generation pedigree submitted

Control (70)

Equivocal (0)

Mild (0)

Moderate (2)

Severe (14)

2-3 mL of venous EDTA blood processed

for DNA extraction

Samples submitted for genotyping on Illumina

230k CanineHD BeadChip

Introduction

Hypothesis

Results

Materials and Methods

Subvalvular aortic stenosis (SAS) is a heritable condition in Rottweilers with a single significant region of genome-wide association.

Figure 1. A) An illustration of a healthy canine heart with the aortic valve and subvalvular region highlighted. B) A gross pathology image of a heart affected with SAS with the subvalvular ridge/ring highlighted. C) 2D, color (upper image) and spectral (lower image) Doppler echocardiogram images of a dog with severe SAS. Note the turbulent blood flow and high aortic flow velocity.

Discussion

Acknowledgements

References

• Chromosome 31 contains the SNPs with the highest suggestive association.

• Candidate genes in the suggestive region include ADAMTS1 and ADAMTS5.

• Both play a role in cardiac development.• ADAMTS5 is expressed in valvular endocardium and in

the aortic wall of the left ventricular outflow tract.5,6

• ADAMTS1 and ADAMTS5 degrade versican, a proteoglycan, during heart valve formation.7

• This study is underpowered and requires additional samples to draw statistically significant conclusions.

60 of these dogsassessed via

echocardiogram

Additive binary model (chi-square)

Mixed linear model analysis (EMMAX)

Bonferroni correction

1. Buchanan JW. Prevalence of cardiovascular disorders. In: Fox PR, Sisson D, and Moise NS, editors. Textbook of canine and feline cardiology. Principles and clinical practice. 2 ed. Philadelphia: WB Saunders; 1999. pp. 457-70.

2. Oyama MA, Thomas WP. Two-dimensional and M-mode echocardiographic predictors of disease severity in dogs with congenital subaortic stenosis. J Am Anim Hosp Assoc. 2002;38:209-15.

3. Kienle RD, Thomas WP, Pion PD. The natural clinical history of canine congenital subaortic stenosis. J Vet Intern Med. 1994;8:423-31.4. Meurs KM, Lehmkuhl LB, Bonagura JD. Survival times in dogs with severe subvalvular aortic stenosis treated with balloon valvuloplasty or atenolol. J Am Vet

Med Assoc. 2005;227:420-24.5. Dupuis LE, McCulloch DR, McGarity JD, Bahan A, Wessels A, Weber D, Diminich AM, Nelson CM, Apte SS, Kern CB. Altered versican cleavage in ADAMTS5

deficient mice; a novel etiology of myxomatous valve disease. Dev Biol. 2011;357:152-64.6. Zhang P, Shen M, Fernandez-Patron C, Kassiri Z. ADAMs family and relatives in cardiovascular physiology and pathology. J Mol Cell Cardiol. 2016;93:186-99.7. Zhou Z, Rawnsley DR, Goddard LM, Pan W, Cao XJ, Jakus Z, Zheng H, Yang J, Arthur JS, Whitehead KJ, Li D, Zhou B, Garcia BA, Zheng X, Kahn ML. The cerebral

cavernous malformation pathway controls cardiac development via regulation of endocardial MEKK3 signaling and KLF expression. Dev Cell. 2015;32:168-80.

Figure 4. A) A Manhattan plot depicting the relative association of each SNP with SAS after EMMAX reduction in population stratification. B) A Q-Q plot demonstrating findings after EMMAX. C) A list of the SNPs with the highest disease association.

Figure 3. A pedigree of an SAS-affected Rottweiler family.

Figure 5. An SAS-affected Rottweiler puppy.

Figure 2. A Rottweiler affected with severe SAS.

Dogs categorizedby phenotype

Pedigrees analyzed to determine mode

of inheritance

Candidate genes investigated

Genome-wide associationstudy (GWAS) via Golden

Helix SVS software

Location Unadjusted P-value Adjusted P-value

Chr_31_19551754 7.83e-06 0.935

Chr_31_20092347 1.79e-05 1

Chr_31_19244149 2.47e-05 1

Chr_31_19257980 2.47e-05 1

Chr_31_20074767 3.06e-05 1

Chr_31_19116278 5.81e-05 1

Chr_31_18264863 6.10e-05 1

A. B. C.

• 119,526 markers were analyzed.• The genomic inflation factor (λ) after EMMAX is 1.02.• The red line is the Bonferroni threshold for significance, located at 6.38.• The black line is the suggestive association threshold, located at 4.30.• The single nucleotide polymorphism (SNP) with the highest suggestive disease

association is located on chromosome 31 (p = 7.83e-06).

• Most parents and grandparents of SAS-affected dogs in Figure3 are unaffected.

• Pedigree analysis of SAS-affected Rottweilers supports an autosomal recessive mode of inheritance.

A.

B. C.

Affected

Unaffected

Equivocal

?? Unknown