infectious in vitro transcripts fromclonedcdnaof potyvirus, … · proc. natl. acad. sci. usa86...

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Proc. Nati. Acad. Sci. USA Vol. 86, pp. 3509-3513, May 1989 Biochemistry Infectious in vitro transcripts from cloned cDNA of a potyvirus, tobacco vein mottling virus (cDNA cloning/T3 RNA polymerase/T7 RNA polymerase/in vitro mutagenesis/electroporation) LESLIE L. DoMIER*, KATHLEEN M. FRANKLIN*, ARTHUR G. HUNTt, ROBERT E. RHOADSt, AND JOHN G. SHAW*§ Departments of *Plant Pathology, tAgronomy, and Biochemistry, University of Kentucky, Lexington, KY 40546 Communicated by Robert J. Shepherd, January 23, 1989 (received for review September 23, 1988) ABSTRACT Full-length cDNA copies of tobacco vein mot- tling virus (TVMV) RNA were constructed downstream from bacteriophage T7 or T3 RNA polymerase promoters. The plasmids were designed to produce in vitro transcripts contain- ing, respectively, one or two guanosine residues at the 5' terminus not derived from the TVMV sequence and a single cytidine residue at the 3' terminus following the poly(A) tail. Introduction of transcripts from either plasmid into tobacco mesophyll protoplasts resulted in the accumulation of TVMV coat protein and RNA. Neither coat protein nor viral RNA accumulated in protoplasts inoculated with linearized cDNA or with in vitro transcripts synthesized in the absence of 7-methylguanosine(5')triphospho(5')guanosine (m7GpppG). Tobacco seedlings inoculated with native TVMV RNA devel- oped symptoms a few days before those inoculated with in vitro transcripts; however, 3 weeks after inoculation, the symptoms produced by the two inocula were indistinguishable. The potyviruses are considered to have the most serious economic impact on crop plants and to be the largest of all the recognized families and groups of plant viruses (1). Potyvirus particles are flexuous rods of length 700-800 nm. Their monopartite genome consists of a single-stranded, (+)-sense RNA molecule of 9.5 kilobases that is 3'-polyadenylylated and contains a 5'-terminal genome-linked protein (VPg). The complete nucleotide sequences of the RNAs of two potyviruses, tobacco vein mottling virus (TVMV) and to- bacco etch virus, have been reported (2, 3). In both cases, the sequence contains a single open reading frame capable of encoding a polypeptide of -340 kDa. Upon proteolytic processing, this polypeptide yields the viral coat protein (CP) and four nonstructural proteins: helper component protein (HC, an aphid transmission factor), cylindrical inclusion protein (CI), and two nuclear inclusion proteins (4). In addition, at least two other gene products for which no proteins have yet been identified are predicted by the nucleotide sequences. The production of infectious RNA transcripts from full- length cloned cDNAs (5-8) has significantly facilitated in- vestigations of the functions of some plant viral proteins. For example, transcripts of cDNA mutated in vitro have been used to study the promoter involved in the synthesis of brome mosaic virus (BMV) subgenomic RNA 4, which encodes the viral CP (9, 10). The role of the tobacco mosaic virus (TMV) CP in movement and symptomatology was studied by altering the cDNA of the CP cistron and observing the effects of the mutant transcripts in plants (11). In vitro transcripts have been used to map a nucleotide sequence in TMV RNA involved in the hypersensitive response in host plants (12), to study the TMV 30-kDa protein gene and its role in cell-to-cell movement (13), and to analyze the properties of the putative replicase gene of TMV (14, 15). As a first step in the development of a genetic system for the study of potyviruses, we have constructed full-length cDNA copies of TVMV RNA and have used them to produce infectious transcripts in vitro. The ability to produce biolog- ically active viral RNA in vitro provides a major tool for the investigation of gene expression, replication, and pathoge- nicity of a large and very important group of viral plant pathogens. MATERIALS AND METHODS Construction of a Full-Length cDNA Copy of TVMV RNA with a T7 Promoter. TVMV RNA was isolated from purified virus by sucrose gradient centrifugation as described (16). A full-length cDNA copy of TVMV RNA was synthesized by the method of Ahlquist (17) with the following modifications. Two oligonucleotides were designed to specifically prime first- and second-strand cDNA synthesis from TVMV RNA. The 3' oligonucleotide primer (5'-GGCCGAGCTCTTTTTT-l TTTTT1-3') contained an oligo(dT) tract to hybridize to the TVMV poly(A) tail and an Sst I recognition site. The 5' oligonucleotide primer (5'-GGCCTCGAGTAATACGACTC- ACTATAGAAAATAAAACAAATCAACACAAC-3')$ con- tained an Xho I recognition site, a bacteriophage T7 RNA polymerase promoter, and the first 23 nucleotides (nt) of the TVMV sequence. After first-strand cDNA synthesis and digestion with RNase A, the cDNA was purified by binding to "glass milk" (BiolOl, Inc.) according to the manufactur- er's recommendations. The cDNA was resuspended in 20 pl of 50 mM Hepes, pH 7.3/20 mM MgCl2/5 mM dithiothreitol and annealed to the 5' primer. Deoxyribonucleotides (200 AM final concentration) and 5 units of phage T4 DNA polymerase (New England Biolabs) were added. The mixture was incu- bated for 1 hr at 370C and the reaction was terminated by heating at 650C for 15 min. The cDNA was then digested with either Xho I and BamHI, BamHI alone, or BamHI and Sst I and ligated into similarly digested pIC20H (Fig. 1A; ref. 19), Abbreviations: TVMV, tobacco vein mottling virus; BMV, brome mosaic virus; TMV, tobacco mosaic virus; CP, coat protein; CI, cylindrical inclusion protein; HC, helper component protein; VPg, viral genome-linked protein; nt, nucleotide(s). §To whom reprint requests should be addressed. IThe original nucleotide sequence of the 5'-terminal region of TVMV RNA was obtained from direct RNA sequencing and indicated the presence of a guanosine at position 5 (2). Subsequently isolated clones of the region have contained an adenosine at this position. More recent RNA sequencing has indicated that the 5' terminus of the viral RNA is heterogeneous, having either three or four terminal adenosine residues (18). Hence, the oligonucleotides used in this report were designed to reflect the change at position 5 and to produce in vitro transcripts with four 5'-terminal adenosine resi- dues. 3509 The publication costs of this article were defrayed in part by page charge payment. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. §1734 solely to indicate this fact. Downloaded by guest on July 21, 2021

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Page 1: Infectious in vitro transcripts fromclonedcDNAof potyvirus, … · Proc. Natl. Acad. Sci. USA86 (1989) 3511 Transcription mixtures were incubated for 20 min at 370C, GTPwasaddedto250,uM,andtheincubation

Proc. Nati. Acad. Sci. USAVol. 86, pp. 3509-3513, May 1989Biochemistry

Infectious in vitro transcripts from cloned cDNA of a potyvirus,tobacco vein mottling virus

(cDNA cloning/T3 RNA polymerase/T7 RNA polymerase/in vitro mutagenesis/electroporation)

LESLIE L. DoMIER*, KATHLEEN M. FRANKLIN*, ARTHUR G. HUNTt, ROBERT E. RHOADSt,AND JOHN G. SHAW*§Departments of *Plant Pathology, tAgronomy, and Biochemistry, University of Kentucky, Lexington, KY 40546

Communicated by Robert J. Shepherd, January 23, 1989 (received for review September 23, 1988)

ABSTRACT Full-length cDNA copies of tobacco vein mot-tling virus (TVMV) RNA were constructed downstream frombacteriophage T7 or T3 RNA polymerase promoters. Theplasmids were designed to produce in vitro transcripts contain-ing, respectively, one or two guanosine residues atthe 5' terminus not derived from the TVMV sequence and asingle cytidine residue at the 3' terminus following the poly(A)tail. Introduction of transcripts from either plasmid intotobacco mesophyll protoplasts resulted in the accumulation ofTVMV coat protein and RNA. Neither coat protein nor viralRNA accumulated in protoplasts inoculated with linearizedcDNA or with in vitro transcripts synthesized in the absenceof 7-methylguanosine(5')triphospho(5')guanosine (m7GpppG).Tobacco seedlings inoculated with native TVMV RNA devel-oped symptoms a few days before those inoculated with in vitrotranscripts; however, 3 weeks after inoculation, the symptomsproduced by the two inocula were indistinguishable.

The potyviruses are considered to have the most seriouseconomic impact on crop plants and to be the largest of all therecognized families and groups of plant viruses (1). Potyvirusparticles are flexuous rods of length 700-800 nm. Theirmonopartite genome consists of a single-stranded, (+)-senseRNA molecule of 9.5 kilobases that is 3'-polyadenylylatedand contains a 5'-terminal genome-linked protein (VPg).The complete nucleotide sequences of the RNAs of two

potyviruses, tobacco vein mottling virus (TVMV) and to-bacco etch virus, have been reported (2, 3). In both cases, thesequence contains a single open reading frame capable ofencoding a polypeptide of -340 kDa. Upon proteolyticprocessing, this polypeptide yields the viral coat protein (CP)and four nonstructural proteins: helper component protein(HC, an aphid transmission factor), cylindrical inclusionprotein (CI), and two nuclear inclusion proteins (4). Inaddition, at least two other gene products for which noproteins have yet been identified are predicted by thenucleotide sequences.The production of infectious RNA transcripts from full-

length cloned cDNAs (5-8) has significantly facilitated in-vestigations of the functions of some plant viral proteins. Forexample, transcripts of cDNA mutated in vitro have beenused to study the promoter involved in the synthesis ofbromemosaic virus (BMV) subgenomic RNA 4, which encodes theviral CP (9, 10). The role of the tobacco mosaic virus (TMV)CP in movement and symptomatology was studied by alteringthe cDNA of the CP cistron and observing the effects of themutant transcripts in plants (11). In vitro transcripts havebeen used to map a nucleotide sequence in TMV RNAinvolved in the hypersensitive response in host plants (12), tostudy the TMV 30-kDa protein gene and its role in cell-to-cell

movement (13), and to analyze the properties of the putativereplicase gene of TMV (14, 15).As a first step in the development of a genetic system for

the study of potyviruses, we have constructed full-lengthcDNA copies ofTVMV RNA and have used them to produceinfectious transcripts in vitro. The ability to produce biolog-ically active viral RNA in vitro provides a major tool for theinvestigation of gene expression, replication, and pathoge-nicity of a large and very important group of viral plantpathogens.

MATERIALS AND METHODSConstruction of a Full-Length cDNA Copy of TVMV RNA

with a T7 Promoter. TVMV RNA was isolated from purifiedvirus by sucrose gradient centrifugation as described (16). Afull-length cDNA copy of TVMV RNA was synthesized bythe method of Ahlquist (17) with the following modifications.Two oligonucleotides were designed to specifically primefirst- and second-strand cDNA synthesis from TVMV RNA.The 3' oligonucleotide primer(5'-GGCCGAGCTCTTTTTT-lTTTTT1-3') contained an oligo(dT) tract to hybridize to theTVMV poly(A) tail and an Sst I recognition site. The 5'oligonucleotide primer (5'-GGCCTCGAGTAATACGACTC-ACTATAGAAAATAAAACAAATCAACACAAC-3')$ con-tained an Xho I recognition site, a bacteriophage T7 RNApolymerase promoter, and the first 23 nucleotides (nt) of theTVMV sequence. After first-strand cDNA synthesis anddigestion with RNase A, the cDNA was purified by bindingto "glass milk" (BiolOl, Inc.) according to the manufactur-er's recommendations. The cDNA was resuspended in 20 plof 50 mM Hepes, pH 7.3/20 mM MgCl2/5 mM dithiothreitoland annealed to the 5' primer. Deoxyribonucleotides (200AMfinal concentration) and 5 units of phage T4 DNA polymerase(New England Biolabs) were added. The mixture was incu-bated for 1 hr at 370C and the reaction was terminated byheating at 650C for 15 min. The cDNA was then digested witheither Xho I and BamHI, BamHI alone, or BamHI and Sst Iand ligated into similarly digested pIC20H (Fig. 1A; ref. 19),

Abbreviations: TVMV, tobacco vein mottling virus; BMV, bromemosaic virus; TMV, tobacco mosaic virus; CP, coat protein; CI,cylindrical inclusion protein; HC, helper component protein; VPg,viral genome-linked protein; nt, nucleotide(s).§To whom reprint requests should be addressed.IThe original nucleotide sequence of the 5'-terminal region ofTVMVRNA was obtained from direct RNA sequencing and indicated thepresence of a guanosine at position 5 (2). Subsequently isolatedclones of the region have contained an adenosine at this position.More recent RNA sequencing has indicated that the 5' terminus ofthe viral RNA is heterogeneous, having either three or four terminaladenosine residues (18). Hence, the oligonucleotides used in thisreport were designed to reflect the change at position 5 and toproduce in vitro transcripts with four 5'-terminal adenosine resi-dues.

3509

The publication costs of this article were defrayed in part by page chargepayment. This article must therefore be hereby marked "advertisement"in accordance with 18 U.S.C. §1734 solely to indicate this fact.

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Proc. Natl. Acad. Sci. USA 86 (1989)

and the constructions were used to transform Escherichiacoli JM109.

Clones containing the three BamHI fragments of TVMVcDNA were selected by insertional inactivation of the f3-galactosidase gene of pIC20H. Plasmids were isolated (20)and analyzed by restriction enzyme digestion. Those whichagreed with the restriction map predicted from the nucleotidesequence of TVMV RNA (2) were analyzed further. Clonesfrom the 5' terminus were assayed for the presence of anactive T7 promoter in in vitro transcription reactions (seebelow). One 5' cDNA clone, pXB2, was selected for furtherconstructions. The sequence of the junction between the T7promoter and the 5' terminus of the viral RNA was confirmedby DNA sequence analysis (21). pTV-Bam7 was selected asrepresentative of the internal BamHI fragment. Clones fromthe 3' terminus were sequenced to determine the length ofthepoly(A) tail. One plasmid, pBS6, contained a 96-nt poly(A)tail and was selected for the construction of the full-lengthclone.The insert of pXB2 was removed by digestion with Xho I

and BamHI and ligated into pUC119 (22) that had beencleaved with Sal I and BamHI (Fig. 1A). The resultingplasmid was named pUCXB2. The insert of pBS6 wasliberated by Sst I and BamHI digestion and ligated intosimilarly digested pUCXB2 to produce pXS2-6. The insert of

A. II28K HC 42K CI ? NIa NIb CPBanHI

Xhol BamHI,,,,,,,,,,.

B~mHIBamHI SstO

pTV-Bam7 was removed by BamHI digestion and ligated intopXS2-6 that had been cleaved with BamHI and treated withalkaline phosphatase. Plasmids were screened by restrictionenzyme digestion to identify those containing the BamHIinsert in the proper orientation. The resulting plasmid wasnamed pXBS7 and represented a complete DNA copy of theTVMV genome downstream from a T7 promoter.

Construction of a Full-Length cDNA Copy of TVMV RNAwith a T3 Promoter. The insert in mTV-H8 (18), whichcontains a cDNA copy of nt 1-1177 of TVMV RNA inM13mpl9, was excised by Sal I and Sst I digestion and ligatedto similarly cleaved pBluescript KS(-) (Stratagene) to pro-duce pBSH8 (Fig. 2A). The plasmid sequences between theT3 promoter and the 5' terminus of TVMV cDNA wereremoved by in vitro mutagenesis (24) using the E. coli strainBD2399 (dut- ung-) and helper virus M13K07 (22) to producesingle-stranded DNA for the mutagenesis reaction. Theoligonucleotide used in the reaction, 5'-ACCCTCACTA-AAGGRAAAATAAAACAAATCAACA-3',~ contained nt-12 through +3 of the T3 promoter followed by the first 19nt ofTVMV RNA. The resulting plasmids were sequenced toverify the deletion and tested in vitro for an active T3promoter. The selected plasmid, pBSH88, was digested withBgl II and Sst I and ligated to an 8785-base-pair Bgl II-Sst Ifragment liberated from pXBS7. The resulting plasmid,pBS1220, contained the complete TVMV sequence down-stream from a T3 promoter and was used for in vitrotranscription experiments.In Vitro Transcription. Transcription reaction mixtures

contained 100 ng of linearized plasmid DNA per ,l; 4-7 unitsof T7 or T3 RNA polymerase (Pharmacia) per ,ul; 40 mMTris-HCl (pH 7.9); 6 mM MgCl2; 10 mM NaCl; 10 mMdithiothreitol; 2 mM spermidine; 250 ,uM each ATP, CTP,and UTP; 50 ILM GTP; 500 ,uM m7GpppG (New EnglandBiolabs); and 1 unit of RNase Block (Stratagene) per ,ul.

A 28K HC 42K GI ? Nia Nib CPA.

BamHI

B. Transcripts

TAATACGACTCACTATAGAAAATAAMCAAAT TATACTGTCGMC(A) CL 6T7 Promoter TVMV Sequence

DIlI BgI'1B. Transcripts

ATTAACCCTCACTAAAGGAAAAATAAAACAAAT TATACTGTCGAAC(A%6CFIG. 1. (A) Construction of a full-length cDNA copy of TVMV

RNA downstream from a T7 promoter. Cistron map of TVMV isshown at top as described by Hellmann et al. (23). Restrictionfragments of TVMV cDNA were cloned into the vectors shown.Thick arrows indicate T7 promoter sequences. The final plasmid wasnamed pXBS7 and represents a complete DNA copy of the TVMVgenome. (B) Predicted site of initiation and direction of transcriptionfrom pXBS7 (arrow). The junction of the T7 promoter and TVMVsequence is indicated.

T3.Promoter TVMV Sequence

FIG. 2. (A) Construction of a full-length cDNA copy of TVMVRNA downstream from a T3 promoter. Thick arrows indicate T3 andT7 promoter sequences as designated. The final plasmid was namedpBS1220 and represents a complete DNA copy of the TVMVgenome. (B) Predicted site of initiation and direction of transcriptionfrom pBS1220 (arrow). The junction of the T3 promoter and TVMVsequence is indicated.

&VIN IV ITC-IN We Illu lily WI1

3510 Biochemistry: Domier et al.

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Proc. Natl. Acad. Sci. USA 86 (1989) 3511

Transcription mixtures were incubated for 20 min at 370C,GTP was added to 250,uM, and the incubation was continuedfor 1 hr. In vitro transcripts were used without furthertreatment in infectivity assays.

Inoculation of Protoplasts and Leaves with in Vitro Tran-scripts. Nicotiana tabacum L. cv. Xanthi mesophyll proto-plasts were prepared and inoculated by electroporation asdescribed by Luciano et al. (25), using a Bio-Rad Gene-Pulserwith either S gg of TVMV RNA or 100 ul of in vitrotranscription reaction mixture. After incubation of the pro-toplasts for 48-60 hr, extracts were assayed for TVMVproteins by immunoblotting using rabbit antiserum preparedagainst TVMV CP.

Inoculum applied to N. tabacum L. cv. Kyl4 seedlings wasprepared by mixing 100 1l of in vitro transcription reactionmixture with 100 /.l of 6 mM sodium phosphate buffer (pH9.0) containing 1 mg of bentonite and 1 mg of Celite per ml (6).Each plant was mechanically inoculated with 20 pil of thismixture. Control seedlings were mock-inoculated or inocu-lated with 0.5 jig of TVMV RNA in 20 gl of phosphatebuffer/bentonite/Celite per plant. All plants were rinsed withwater 5 min after inoculation. Those which developed symp-toms were analyzed for accumulation of TVMV-encodedproteins by immunoblotting.

Immunoblotting. Leaf tissue was homogenized (1 g/ml) indisruption buffer [10% (vol/vol) glycerol/2.3% (wt/vol)SDS/60 mM Tris-HCl, pH 8.0/5% (vol/vol) 2-mercapto-ethanol]. The extracts were boiled for 5 min and centrifugedfor 5 min in an Eppendorf microcentrifuge. Protoplasts werecollected by centrifugation and resuspended at a concentra-tion of 4 x 106 per ml in incubation medium. Samples (20 ul)were diluted with an equal volume of disruption buffer,boiled, and centrifuged as above. Proteins from the leaf orprotoplast extracts were separated by electrophoresis in 10%polyacrylamide gels containing SDS (26) and transferred tonitrocellulose (27). Following transfer, the nitrocellulosemembrane was blocked with 5% nonfat dry milk (28) inTris-buffered saline (50 mM Tris-HCl, pH 7.5/200 mM NaCl)and incubated with antiserum against TVMV CP, CI, or HC(29) for 16 hr. The membrane was then washed with Tris-buffered saline and incubated for 1-3 hr with goat anti-rabbitIgG conjugated to alkaline phosphatase (Sigma). Immunecomplexes were detected by the method of Leary et al. (30).RNA Dot Hybridization. Samples containing 5 x 104

electroporated protoplasts were collected at 2, 24, 48, and 72hr after inoculation and frozen in liquid nitrogen. The frozenprotoplasts were lysed in 4 M guanidinium isothiocyanate(31) and the extracts were applied to nitrocellulose. The blotswere baked, prehybridized, hybridized, and washed as de-scribed by Thomas (32). A (-)-sense TVMV RNA probe wasprepared by transcription of a full-length cDNA derived frompBS1220, with [a-32P]UTP as the labeled nucleotide.

RESULTSConstruction of Full-Length cDNA Copies of the TVMV

Genome. Since the presence of 5' nonviral sequences dimin-ishes the infectivity of in vitro transcripts ofBMV cDNA (33),efforts were made to minimize the length of plasmid-derivedsequences at the 5' termini of the in vitro transcripts. Both T7and T3 RNA polymerases initiate transcription primarily atguanosine residues (34). The second and third nucleotides oftranscripts initiated by these polymerases are also guanosineresidues. As TVMV RNA begins with an adenosine residue,it was necessary to introduce guanosine residues at the 5'terminus of TVMV cDNA for effective transcription by T7and T3 RNA polymerases. For the construction of pXBS7(Fig. 1A), an oligonucleotide that introduced a single gua-nosine between the T7 promoter and the 5' terminus of theTVMV sequence was used to prime second-strand cDNA

synthesis (Fig. 1B). When this clone was linearized with SstI and transcribed, the transcripts theoretically contained asingle guanosine at the 5' terminus and a single cytidine at the3' terminus not derived from the TVMV sequence (Fig. 1B).A full-length clone containing a T7 promoter with adenosinesat positions +1, +2 and +3 was not transcribed by T7 RNApolymerase (data not shown), indicating that at least oneguanosine residue is required for transcription.

In the construction of pBS1220 (Fig. 2A), oligonucleotide-directed mutagenesis was used to remove the plasmid se-quences between the T3 promoter and the start of the TVMVsequence. The primer used in the in vitro mutagenesisreactions was a mixture of two oligonucleotide sequences.One sequence contained a guanosine residue at position +3,which conformed to the reported consensus sequence for T3promoters (34). The other contained an adenosine at position+3, which would produce a variant T3 promoter and leavetwo guanosines and one extra adenosine at the 5' termini ofthe transcripts. Clones were isolated with either a guanosineor an adenosine in position +3. Both were actively tran-scribed by T3 RNA polymerase. Since clones with twoguanosine residues produce transcripts more similar to theTVMV RNA sequence, these were used in the constructionof pBS1220. pBS1220 represents a full-length cDNA copy ofTVMV, of which nt 7%-9500 were derived from pXBS7 (Fig.1A). In addition to the two 5' nonviral guanosine residues,transcripts from pBS1220 should have a poly(A) tail of 96 nt,and a 3' nonviral cytidine residue (Fig. 2B).

Protoplast Infectivity Assays. Evidence that the transcriptswere infectious was initially obtained when TVMV CP wasdetected in extracts of tobacco mesophyll protoplasts thathad been electroporated in the presence of in vitro transcriptsof either of the full-length clones (Fig. 3). These protoplasts,however, produced much less CP than those inoculated withnative TVMV RNA. In a separate experiment, a dilutionseries of TVMV RNA indicated that the amount of CPproduced in response to 100 ,ul of transcription reactionmixture was approximately equal to that produced by 0.05 ,ugof TVMV RNA (data not shown). Since the transcriptionreactions contained -25 ,g of product RNA, the in vitrotranscripts were therefore about 500 times less infectious

R M T7 T3

95.5

55.0

43.0 --

29.0As * <-o p

18.4

FIG. 3. Detection ofTVMV CP in tobacco mesophyll protoplastsinoculated with in vitro transcription reaction mixtures. Protoplastswere electroporated with TVMV RNA (lane R), pXBS7 transcripts(lane T7), pBS1220 transcripts (lane T3), or inoculation mediumalone (lane M). Protoplast extracts were electrophoresed in a 10%topolyacrylamide gel, and the separated proteins were transferred tonitrocellulose and probed with anti-TVMV CP antibodies. Markersat left indicate positions and sizes (kDa) of standard proteinselectrophoresed in parallel.

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Proc. Natl. Acad. Sci. USA 86 (1989)

than an equivalent amount ofnative TVMV RNA. No CP wasproduced in protoplasts when m7GpppG was omitted fromthe transcription reaction. Similarly, CP was not detected inprotoplasts electroporated with linearized plasmid DNAalone (data not shown), indicating that, as has been shownwith other RNA plant viruses (5-8), the full-length cDNAwas not infectious.The accumulation of viral RNA in protoplasts inoculated

with in vitro transcripts was assayed by dot blot hybridization(Fig. 4). The positive reactions in extracts of protoplastscollected 2 hr after inoculation with transcripts were due tothe presence of residual inoculum. The hybridization signalincreased between 24 and 48 hr in transcript-inoculatedprotoplasts, indicating that replication of transcript RNA hadoccurred. DNA in protoplasts inoculated with linearizedplasmid DNA gave a low but fairly constant signal.Tobacco Seedling Infectivity Assays. In four separate ex-

periments, aliquots of in vitro transcription mixtures wereapplied by standard mechanical inoculation procedures to theleaves of small tobacco seedlings. Typical vein mottlingsymptoms appeared on an average of5.5% of the seedlings 7-10 days after inoculation (Table 1). Other seedlings wereinoculated with an amount of native RNA estimated to be 10-20% of the amount of transcript RNA applied to eachseedling; an average of 60% of these displayed symptomsafter 4-5 days.

Seedlings were also mock-inoculated or were inoculatedwith pXBS7 DNA (Table 1). These control plants weremaintained for the same period of time and in the samegrowth room as the seedlings that had been inoculated withnative or transcript RNA. At no time during these or manyother experiments involving infectivity assays with TVMV orTVMV RNA have any of the control seedlings becomeinfected. We are therefore confident that none of the tran-script-inoculated plants became infected as a result of ad-ventitious mechanical or vector-mediated inoculation withnative virus or viral RNA.As noted above, symptoms in transcript-infected seedlings

developed more slowly than did those infected with nativeviral RNA. After 3 weeks, however, the two types of plants

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Table 1. Infectivity of in vitro transcripts of clonedTVMV cDNA

Inoculum* InfectivitytNone 0/60Linearized pXBS7 0/30TVMV RNA 24/40In vitro transcripts 11/200

*Tobacco seedlings were mock-inoculated or were inoculated withlinearized pXBS7 plasmid DNA (1 jug per plant), TVMV RNA (0.5Ag per plant), or in vitro transcription reaction mixtures (20 Al perplant).

tTotal number of plants in four separate experiments that developedTVMV symptoms/total number of plants inoculated. The resultswith in vitro transcripts in the individual experiments were 3/60,2/50, 1/40, and 5/50.

were indistinguishable and had accumulated CP, HC, and CIto essentially equal levels (Fig. 5).

Infectivity of Progeny Virus. To determine whether theinitial lag in the development of symptoms in tobaccoseedlings was due to the number of infectious RNA mole-cules in the inoculum or to a difference in nucleotidesequence in the cloned cDNA, extracts of plants inoculated3 weeks previously with either in vitro transcripts or TVMVRNA were used to inoculate a second set of seedlings. Therewas no lag in the development of symptoms in plantsinoculated with sap from transcript-infected plants, indicat-ing that those RNA molecules capable of producing aninfection were not phenotypically different from viral RNA.Aphids efficiently transmitted virus from eitherTVMV RNA-or in vitro transcript-infected plants (data not shown).

DISCUSSIONWe have constructed full-length TVMV cDNA clones that,when transcribed with either bacteriophage T7 or T3 RNApolymerase, produced genomic-length RNA transcripts thatwere infectious in tobacco seedlings and mesophyll proto-plasts. Transcripts derived from an initial set ofcDNA cloneswith very short (12-nt) poly(A) tails were not infectious (datanot shown). The substitution of 3'-terminal fragments con-taining longer poly(A) tails was sufficient to produce infec-tious transcripts. The 3'-terminal fragments used to constructthese clones contained 1300 nt of coding sequence, the 3'

Anti-CP Anti-HC Anti-ClM R T7 T3 M R T7 T3 M R T7 T3

95.52 hr

_ < Cl24 hr

48hr

72 hr

55.0

S< HC

43.0 ---

S

FIG. 4. Detection of TVMV RNA in tobacco mesophyll proto-plasts inoculated with in vitro transcription reaction mixtures.Protoplasts were electroporated with pXBS7 transcripts, pBS1220transcripts, pXBS7 DNA, or inoculation medium alone and weresampled 2, 24, 48, and 72 hr thereafter. Total nucleic acid extractsfrom the protoplasts were dotted onto nitrocellulose and hybridizedto a 32P-labeled (-)-sense TVMV RNA probe. All samples wereanalyzed on the same nitrocellulose filter.

29.0 -_" A ( CP

18.4

FIG. 5. Detection of TVMV proteins in tobacco seedlingsinoculated with in vitro transcripts. Proteins in extracts of leavesinoculated with pXBS7 transcripts (T7), pBS1220 transcripts (T3), ornative TVMV RNA (R) or mock-inoculated (M) were separated in10% polyacrylamide gels, transferred to nitrocellulose, and probedwith anti-TVMV CP, HC, and CI antibodies.

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Proc. Natl. Acad. Sci. USA 86 (1989) 3513

noncoding sequence, and either a 37- or a 96-nt poly(A) tail.It is therefore possible that the lack of infectivity of theoriginal transcripts was due to a lethal mutation in one ofthese regions in the original clones. However, the presenceof a poly(A) tail of 140 nt was found to be optimal for theproduction of infectious transcripts of the comovirus cowpeamosaic virus (35). Thus, there may be a threshold length ofpoly(A) below which TVMV RNA transcripts are unstableafter introduction into plant cells.

Picornaviruses, like potyviruses, have a VPg at the 5'terminus of the encapsidated RNA. The in vitro transcriptionof poliovirus cDNA yields infectious RNA that possesses a5' m7GpppG cap in place of the VPg. This indicates that theVPg is not absolutely required for infectivity of picornaviralRNA (36). In the protoplast studies reported here, theaddition of 5' m7GpppG was required to produce infectiousin vitro transcripts from TVMV-derived cDNA. Since thegenomic organization of the picorna- and potyviruses is verysimilar (37), this result was not unexpected. Similarly, it hasbeen noted that the addition of 5' m7GpppG to in vitrotranscripts of BMV (5) and TMV (6, 7) cDNAs greatlyenhances their infectivity. It is not clear whether the capfunctions to enhance infectivity by facilitating the translationof the transcripts or by protecting the transcripts fromdegradation.The ability to produce infectious in vitro transcripts will

enable us to begin to analyze the TVMV genome genetically.Potyviruses produce a number of nonstructural proteins, thefunctions of which are not completely understood. It will nowbe possible to introduce defined alterations into the cistronsencoding the various viral proteins and to assay the effects ofthese alterations on virus replication, symptom development,cell-to-cell movement, and aphid transmissibility.

We thank John Murphy for preparation of TVMV RNA. Thiswork is supported by Grant 4E021 from the University of KentuckyTobacco and Health Research Institute and Grant 85-CRCR-1-1536from the U.S. Department of Agriculture Competitive Grants Pro-gram.

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