information systems basic core specialization clinical imaging bioinformatics public health computer...

Information SystemsInformation Systems

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Basic

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Core

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ClinicalClinical ImagingImaging BioInformaticsBioInformaticsPublic HealthPublic Health

Computer ScienceComputer Science

MethodsMethods(formal models)(formal models)

BiomedicalBiomedical

Decision MakingDecision Making

Information PresentationInformation Presentation

StatisticsStatistics

Data RepresentationData Representation

EvaluationEvaluation

Informatics Informatics Methods in Methods in

Biomedicine: Biomedicine:

Foundations of a Foundations of a ProfessionProfession


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Basic

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Core

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Basic

Basic

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Core

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ClinicalClinical

PreclinicalPreclinical

Post-docPost-doc


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Basic

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Core

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FormalFormal

Mathematical, Mathematical, technicaltechnical

•OntologyOntology•Database Database theorytheory•Signal Signal processingprocessing•Sequence Sequence analysisanalysis•Formal Formal grammarsgrammars•Process modelsProcess models•Software Software engineeringengineering

AppliedApplied

A core set of A core set of methods for methods for implementing implementing and evaluating and evaluating solutionssolutions

•Deployment Deployment methodsmethods•Implementation Implementation issuesissues•Assess impactAssess impact

EmpiricalEmpirical

Cognitive, Cognitive, behavioral, behavioral, organizationalorganizational

•Experimental Experimental designdesign•Data modelingData modeling•VisualizationVisualization•Decision Decision analysisanalysis•Project Project managementmanagement•User interfaceUser interface


Basic

Basic

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Core

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Basic

Basic

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Core

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Can apply computational techniques to Can apply computational techniques to manage data,develop software and solve manage data,develop software and solve problemsproblems

• Database SystemsDatabase Systems

• Machine LearningMachine Learning

• Programming and Problem SolvingProgramming and Problem Solving

• Advanced Software EngineeringAdvanced Software Engineering


Basic

Basic

Core

Core

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Can apply mathematical techniques to analyze Can apply mathematical techniques to analyze data and test hypothesesdata and test hypotheses

• Introduction to BiostatisticsIntroduction to Biostatistics

• Introduction to Biostatistical MethodsIntroduction to Biostatistical Methods


Basic

Basic

Core

Core

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Is conversant with concepts, terminology, Is conversant with concepts, terminology, institutions, professionals, and methods of institutions, professionals, and methods of

biomedical domainbiomedical domain

• Biochemistry and Molecular BiologyBiochemistry and Molecular Biology

• Acculturation to MedicineAcculturation to Medicine

• PhysiologyPhysiology

• EpidemiologyEpidemiology


Basic

Basic

Core

Core

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Informatics KnowledgeInformatics Knowledge

Is familiar with theories and results in Medical Is familiar with theories and results in Medical Informatics, and able to apply basic methods Informatics, and able to apply basic methods

to solve problemsto solve problems

• Methods in Medical Informatics (logic, Methods in Medical Informatics (logic, decision science, cognitive science)decision science, cognitive science)

• Introduction to Medical Informatics Introduction to Medical Informatics ApplicationsApplications


Basic

Basic

Core

Core

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Informatics MethodsInformatics Methods• LogicLogic

• Formal GrammarsFormal Grammars

• OntologyOntology

• Database theoryDatabase theory

• Decision TheoryDecision Theory

• Cognitive AnalysisCognitive Analysis

• Process ModelsProcess Models

• Measurement TheoryMeasurement Theory


Basic

Basic

Core

Core

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Basic

Basic

Core

Core

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Can analyze, develop, and apply Can analyze, develop, and apply representations of biomedical datarepresentations of biomedical data

• Representation and Coding of Medical DataRepresentation and Coding of Medical Data


Basic

Basic

Core

Core

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Can analyze, develop, deploy and manage Can analyze, develop, deploy and manage complex information systemscomplex information systems

• Health Information Systems ArchitectureHealth Information Systems Architecture

• Introduction to Information ManagementIntroduction to Information Management


Basic

Basic

Core

Core

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Information Information PresentationPresentation

Can analyze, develop, and deploy visual Can analyze, develop, and deploy visual presentations of biomedical informationpresentations of biomedical information

• User Interfaces in MedicineUser Interfaces in Medicine

• Understanding InformationUnderstanding Information


Basic

Basic

Core

Core

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Can analyze, develop, and apply formal models Can analyze, develop, and apply formal models of biomedical decision makingof biomedical decision making

• Quantitative Models for Medical Decision Quantitative Models for Medical Decision Making and Clinical SupportMaking and Clinical Support

• Cognitive Sciences and Medical InformaticsCognitive Sciences and Medical Informatics

• Social and Economic Factors in Clinical Social and Economic Factors in Clinical Decision MakingDecision Making


Basic

Basic

Core

Core

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Can analyze, plan and carry out formal Can analyze, plan and carry out formal evaluations of information systemsevaluations of information systems

• Evaluation Methods in Medical InformaticsEvaluation Methods in Medical Informatics

• Design of Medical ExperimentsDesign of Medical Experiments

• Introduction to Sociomedical Sciences Introduction to Sociomedical Sciences

Research MethodsResearch Methods


Basic

Basic

Core

Core

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Basic

Basic

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Core

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Clinical Application Clinical Application DomainDomain

• Economics of InformaticsEconomics of Informatics

• Project ManagementProject Management

• Interactive Health CommunicationsInteractive Health Communications

• Introduction to Databases and Data MiningIntroduction to Databases and Data Mining


Basic

Basic

Core

Core

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Imaging Application Imaging Application DomainDomain

• Biomedical ImagingBiomedical Imaging

• Analysis and Quantification of Medical Analysis and Quantification of Medical ImagesImages

• Wavelet ApplicationsWavelet Applications

• Computation Neural Modeling and Computation Neural Modeling and NeuroengineeringNeuroengineering


Basic

Basic

Core

Core

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Bioinformatics Bioinformatics Application DomainApplication Domain

• Intro to GenomicsIntro to Genomics

• Computation GenomicsComputation Genomics

• Sequence AnalysisSequence Analysis

• Microarrays and Regulatory NetworksMicroarrays and Regulatory Networks

• Biological DatabaseBiological Database


Basic

Basic

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Core

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Public Health Public Health Application DomainApplication Domain

• Use of Large Scale national health care data Use of Large Scale national health care data setssets

• Hospital Organization and ManagementHospital Organization and Management

• Health CommunicationsHealth Communications


Basic

Basic

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Core

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Applying Bioinformatics Knowledge to Research Areas

BiomedicalKnowledge

BiomedicalData

KnowledgeBase

InferencingSystem

DataBase

DataAcquisition

BiomedicalResearch

Planning &Data Analysis

KnowledgeAcquisition

TeachingHumanInterface

TreatmentPlanning

DiagnosisInformationRetrieval

ModelDevelopment

ImageGeneration

Real-time acquisitionImagingSpeech/language/textSpecialized input devices

Machine learningText interpretationKnowledge engineering

Basic ResearchBasic Research Informatics Informatics ChallengesChallenges ApplicationsApplications

ClinicalClinical

Coding, data structures, high performance computing

Vocabularies, automated retrieval from repositories

Distributed medical records, clinical trials, teledentistry

ImagingImaging

3-D modeling, visualization, data representation

Ontology-based ref models and classification

3-D anatomy atlases, radiological diagnosis

BioinformaticBioinformaticss

Biochips, algorithms for DNA sequencing, patient specific drugs

Linking genomic and patient data, security, ethics

Genetic-based patient records and protocols

Public HealthPublic Health

Databases, searching, data analysis theories and algorithms

Integration and validation of info, knowledge discovery

Data mining, citizen-based services


Basic

Basic

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Core

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Thanks to Thanks to

Dr. Stephen B. JohnsonDr. Stephen B. Johnson

Dr. Ted ShortliffeDr. Ted Shortliffe


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information systems basic core specialization clinical imaging bioinformatics public health computer...

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