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Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 1 Cairo University Instrumentation in Bioengineering In the framework of the undergraduate course “Instrumentation and Control Systems” Mohamed Samer, Dr. sc. agr. Associate Professor Bioresource Engineering Department of Agricultural Engineering Faculty of Agriculture, Cairo University E-Mails: [email protected] ; [email protected] Website: http://scholar.cu.edu.eg/samer/biocv

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Page 1: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 1Cairo University

Instrumentation in Bioengineering

In the framework of the undergraduate course “Instrumentation and Control Systems”

Mohamed Samer, Dr. sc. agr. Associate ProfessorBioresource EngineeringDepartment of Agricultural Engineering Faculty of Agriculture, Cairo UniversityE-Mails: [email protected]; [email protected]: http://scholar.cu.edu.eg/samer/biocv

Page 2: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 2Cairo University

Introduction

Page 3: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 3Cairo University

Instrumentation in Bioengineering are used for analyzing

waste air and wastewater, biofuels, chemicals, polymers

and bioproducts.

The bioproducts are, for example: food, feed,

pharmaceuticals, nutraceuticals, biochemicals, biopolymers

and biological materials (i.e. biomaterials).

Page 4: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 4Cairo University

Gas Chromatography (GC)

Covered in a Previous Lecture

Page 5: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 5Cairo University

High-Performance Liquid Chromatography (HPLC)

Covered in a Previous Lecture

Page 6: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 6Cairo University

Fourier-Transform Infrared Spectroscopy (FTIR)

Page 7: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 7Cairo University

Fourier-Transform Infrared Spectroscopy (FTIR) is a techniqueused to obtain an infrared spectrum of absorption, emission,photoconductivity or Raman scattering of a solid, liquid or gas.

An FTIR spectrometer simultaneously collects high-spectral-resolution data over a wide spectral range.

This confers a significant advantage over a dispersivespectrometer, which measures intensity over a narrow range ofwavelengths at a time.

The term FTIR originates from the fact that a Fourier Transform(a mathematical process) is required to convert the raw datainto the actual spectrum.

Page 8: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 8Cairo University

The Fourier Transform (FT) decomposes a function of time (asignal) into the frequencies that make it up.

Page 9: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 9Cairo University

The spectrum indicating the signature molecular of a samplecan be retrieved when infrared ray is radiated through a sample.

This is due part of the ray will be absorbed by the sample andsome is transmitted through the sample.

The usefulness of infrared spectroscopy arises because differentchemical structures (molecules) produce different spectralfingerprints.

Page 10: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 10Cairo University

FTIR Interferometer

Page 11: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 11Cairo University

Working Principle of FTIR

Page 12: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 12Cairo University

Working Principle of FTIR

Page 13: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 13Cairo University

Working Principle of FTIR

Page 14: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 14Cairo University

Source: PerkinElmer

Page 15: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 15Cairo University

Working Principle of FTIR

Source: PerkinElmer

Page 16: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 16Cairo University

Page 17: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 17Cairo University

X-Ray Diffractometer (XRD)

Page 18: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18Cairo University

X-Ray Diffraction (XRD) is a rapid analytical technique primarilyused for phase identification of a crystalline material and canprovide information on unit cell dimensions.

The analyzed material is finely ground, homogenized, andaverage bulk composition is determined.

X-Ray Diffraction (XRD) ascertains the molecular structure of acrystalline material by diffracting x-rays through the sample.

An XRD analyzer obtains interference patterns reflecting latticestructures by varying the angle of incidence of the X-Ray beam.

Page 19: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 19Cairo University

Thus, the precision, speed of rotation, and beam size of the x-rays become important parameters by which to judge products.

Benchtop XRD can be targeted for:

1. single crystal diffraction for imaging lattices;

2. powder diffraction for phase determination;

3. identifying unfamiliar substances for use in inspection,crystallography, and pharmaceutical research correlatingcrystal structures with drug efficacy.

Page 20: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 20Cairo University

X-ray diffractometers consist of three basic elements: an X-raytube, a sample holder, and an X-ray detector.

X-rays are generated in a cathode ray tube by heating a filamentto produce electrons, accelerating the electrons toward a targetby applying a voltage, and bombarding the target material withelectrons.

When electrons have sufficient energy to dislodge inner shellelectrons of the target material, characteristic X-ray spectra areproduced.

Page 21: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 21Cairo University

Workflow for solving the structure ofa molecule by X-ray crystallography

Page 22: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 22Cairo University

X-Ray Diffractometer(XRD)

Page 23: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 23Cairo University

X-Ray Diffractometer in Motion

Page 24: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 24Cairo University

X-Ray Diffractometer in Motion

Page 25: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 25Cairo University

Elemental Analyzer

Page 26: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 26Cairo University

Elemental Analysis is a process where a material sample (e.g.soil, water, wastewater, bodily fluids, minerals, chemicalcompounds) is analyzed for its elemental & isotopiccomposition.

Elemental analysis can be qualitative (determining whatelements are present), and it can be quantitative (determininghow much of each are present).

Elemental Analysis (EA) almost always refers to CHNX analysis—the determination of the mass fractions of carbon, hydrogen,nitrogen, and heteroatoms (X) (N, O, S, P, Cl, Br, I) of a sample.

Page 27: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 27Cairo University

Principle of Elemental AnalyzerSource: Thermo Scientific

Page 28: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 28Cairo University

Principle of Elemental Analyzer

TCD: Thermal Conductivity Detector

• Combustion:

CHNX + O2 ---> N2 + NOx + O2 + CO + CO2 + CH4 + X- + SOx + H2O

Page 29: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 29Cairo University

Analyzer Software

Page 30: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 30Cairo University

This information is very important to help determine thestructure of an unknown compound, as well as to help ascertainthe structure and purity of a synthesized compound.

Elemental Analyzer

Page 31: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 31Cairo University

Elemental Analyzer

Page 32: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 32Cairo University

Catalogs

Page 33: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 33Cairo University

Videos

Page 34: Instrumentation in Bioengineering Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 18 Cairo University X-Ray Diffraction (XRD) is a rapid analytical technique primarily

Dr. sc. agr. M. Samer | Instrumentation in Bioengineering | 34Cairo University

Cairo University

Thank You!