international digital curation conference demo talk labtrove digital research notebooks
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The LabTrove Digital Research NotebookTRANSCRIPT
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Research Data Management
LabTrove: A Researcher Centric Electronic Laboratory Notebook
www.labtrove.org
25 Feb 2014 IDCC 2014
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25 Feb 2014 IDCC 2014
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Intelligent Open Access to Data 25 Feb 2014 IDCC 2014
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Science is increasingly
interdisciplinary
25 Feb 2014 IDCC 2014
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StructureGate
The academics media profile!
Methods are as important as the data
25 Feb 2014 IDCC 2014
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Faraday’s laboratory notebooks are also remarkable in the amount of detail that they give about the design and setting up of experiments, interspersed with comments about their outcome and thoughts of a more philosophical kind. All are couched in plain language, with many vivid phrases of delightful spontaneity…. Peter Day, ‘The Philosopher’s Tree: A Selection of Michael Faraday’s Writings’
25 Feb 2014 IDCC 2014
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Responsible Researchers • Educa&on of researchers is cri&cal – They need to understand that they are the most important part of the chain that creates reliable value in the research record
– They are the best place people to record an accurate account
– They need to be able to do this easily and see the value to themselves in doing so
– LabTrove makes this possible – it does not impose “the best” soluOon but allows research pracOce to evolve
25 Feb 2014 IDCC 2014
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The integrity of science as a discipline rests on the ability of scien;sts to reproduce the claims of others. While none of the organic chemistry journals go to the same lengths as Organic Syntheses, where each procedure must be reproduced as described in an independent laboratory before publica;on, …….. sufficient detail so that the procedures can be reproduced and provide sufficient data to establish the structures ……. This informa;on is necessary for the review process …… to base their experiments on published work.
Methods are as important as the data
25 Feb 2014 IDCC 2014
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Infrastructures -‐ Architecture
CollaboraOon
Sharing
Reuse
CuraOon
25 Feb 2014 IDCC 2014
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Electronic Laboratory Notebooks
ELNs
Comparison with tradiOonal paper
notebooks
CommunicaOon CollaboraOon
Sharing Linking CuraOng
• Higher Quality Record • Natural linking to data
and external resources • Easier CollaboraOon • Improved planning • Improved discussions • Efficiency gain in
producOon of presentaOons/reports
• Change the nature of Professor/Student interacOons
25 Feb 2014 IDCC 2014
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1980 1990 2000 2010
CollaboraOon
SemanOcs
User focus
Web 2.0
RS/1
PNNL
Smart Tea
LabTrove
Trust in ELNs for IP compliance
Developments in ELN implementaOon and characterisOcs
Commercial offerings
25 Feb 2014 IDCC 2014
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The LabTrove story
h\p://www.labtrove.org
25 Feb 2014 IDCC 2014
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How do we communicate?
• Surprisingly difficult to explain what a process involves
• Much of the detail is assumed to be understood and not explicitly discussed
• This is where the mis-‐understandings usually arise.
If you can't describe what you are doing as a process, you don't know what you're doing. W. Edwards Deming
Growing need for the global (virtual) equivalent of the “Tea Room”
25 Feb 2014 IDCC 2014
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LabTrove: Easy Communica;on
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IDCC 2014
AutoTrove from Matlab
Computa;onal processes also blog 25 Feb 2014
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BlogMyData Project -‐ Godiva
25 Feb 2014 IDCC 2014
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25 Feb 2014 IDCC 2014
Diversity and Disability
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LabTrove Open Notebooks Mat Todd’s PZQ Project
25 Feb 2014 IDCC 2014
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25 Feb 2014 IDCC 2014
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If you have a plan then make use of it! Just like the UK COSHH safety plans are ideal basis for driving an Electronic Laboratory Notebook With a liIle extra work a plan becomes a useful way to provide context for the digital record 25 Feb 2014 IDCC 2014
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DisseminaOon
• Methods and emphasis varies with discipline – Journal vs Conference – Pure vs Applied – Research vs ApplicaOon
• Authorship & Acknowledgements – Who goes on the paper? – Who is menOoned in the press release? – Do you acknowledge the technician?
25 Feb 2014 IDCC 2014
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PublicaOon • On publicaOon make the LabTrove pages open and link from the publicaOon (direct or via datacite doi)
• Select and export LabTrove entries as staOc HTML (or XML) to archive as Journal supplementary data, which maintains the links between LabTrove records
• Provide on going research record as an acOve LabTrove site or HTML archive web site to align with RCUK data policies
• Achieve Intelligent Access (Royal Society) as the data files are linked to by LabTrove posts which explain how and why they exist and what they mean
25 Feb 2014 IDCC 2014
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ValidaOon
• Increasing the value of data • How to bring all the necessary informaOon together to enable appropriate validaOon
• Increasingly difficult & expensive to achieve • Need provenance and context • EssenOal step otherwise just a collecOon of items
25 Feb 2014 IDCC 2014
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3D Printers
Change in the whole way we design and build
Shared Space? 25 Feb 2014 IDCC 2014
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Archiving of data
• Experiments are oien repeated
– Data stored locally on a computer and can’t be found
– HandwriOng can’t be read – Laboratory notebooks lost or damaged
– Correct data not recorded first Ome round
h\p://www.ecs.soton.ac.uk/regenesis/pictures
25 Feb 2014 IDCC 2014
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Open Source -‐ Hosted Service • LabTrove is Open Source free to download • Clearly sekng up yourself incurs setup and maintenance, backup and support costs!!
• So ideal if LabTrove Service is provided as a hosted service which offers support 24/7 help
• Liberata is a Janet Broker approved provider (meets RCUK requirements)
• We are working with Liberata to provide the UK HE LabTrove Service
25 Feb 2014 IDCC 2014