introduction - sharedocs.ca file · web viewkey words: retinoblastoma, rb1 gene, bilateral,...

30
Format of the review article: - A word limit of 5,000 words; - Less than 80 references; - No strict limit to the number of tables and figures (8-10 recommended); - An unstructured abstract of ≤ 250 words; - The maximum number of authors: 6 Genetics and Molecular Diagnostics in Retinoblastoma - An Update Authors: Sameh E. Soliman, MD, 1-2 Hilary Racher, PhD, 3 Chengyue Zhang, MD , 4 Hilary Racher, PhD Heather MacDonald, 1 Brenda L. Gallie. 1,5 Affiliations: 1 Department of Ophthalmology and Vision Sciences, University of Toronto, Ontario, Canada 2 Department of Ophthalmology, Faculty of Medicine, University of Alexandria, Alexandria, Egypt. 3 Impact Genetics, Bowmanville, Ontario.

Upload: dodiep

Post on 25-Jul-2019

215 views

Category:

Documents


0 download

TRANSCRIPT

Page 1: INTRODUCTION - sharedocs.ca file · Web viewKey Words: retinoblastoma, RB1 gene, bilateral, unilateral, DNA sequencing, genetic counselling, prenatal screening. ... pedigree: F445

Format of the review article:

- A word limit of 5,000 words;

- Less than 80 references;

- No strict limit to the number of tables and figures (8-10 recommended);

- An unstructured abstract of ≤ 250 words;

- The maximum number of authors: 6

Genetics and Molecular Diagnostics in

Retinoblastoma - An Update

Authors:

Sameh E. Soliman, MD,1-2 Hilary Racher, PhD,3 Chengyue Zhang, MD,4 Hilary Racher, PhDHeather

MacDonald,1 Brenda L. Gallie.1,5

Affiliations:

1Department of Ophthalmology and Vision Sciences, University of Toronto, Ontario, Canada

2Department of Ophthalmology, Faculty of Medicine, University of Alexandria, Alexandria, Egypt.

3Impact Genetics, Bowmanville, Ontario.

4Department of Ophthalmology, Beijing Children’s Hospital, Capital Medical University, Beijing, China.

5Departments of Ophthalmology, Molecular Genetics, and Medical Biophysics, University of Toronto,

Toronto, Canada.

Corresponding author:

Brenda L. Gallie: Hospital for Sick Children, 555 University Ave, Toronto, Ontario, Canada M5G 1X8.

Telephone: +1-294-9729

Gallie Brenda, 01/04/17,
Organizing Text: Number the pages of the manuscript consecutively, beginning with the introduction as page 1. The text of an original article should not exceed 4,000 words with up to 8 images and tables and 50 references while that of a review article should not exceed 6,000 words with up to 8 images and tables and 100 references. The text of an annual review should not exceed 15,000 words with up to 200 references.
Gallie Brenda, 01/04/17,
Title page: Include on the title page (a) complete manuscript title; (b) authors’ full names, highest academic degrees, and affiliations; (c) name and address for correspondence, including fax number, telephone number and email address; (d) address for reprints if different from that of corresponding author; and (e) sources of support that require acknowledgement.
Page 3: INTRODUCTION - sharedocs.ca file · Web viewKey Words: retinoblastoma, RB1 gene, bilateral, unilateral, DNA sequencing, genetic counselling, prenatal screening. ... pedigree: F445

Disclosures:

Both SS and HR contributed equally to this review as first co-first authors.

We confirm that this manuscript has not been and will not be submitted elsewhere for publication, and all

co-authors have read the final manuscript within their respective areas of expertise and participated

sufficiently in the review to take responsibility for it and accept its conclusions.

HR is a paid employee and BG is an unpaid medical advisor at Impact Genetics. No other authors have

any financial/conflicting interests to disclose.

This paper received no specific grant from any funding agency in the public, commercial or not-for-profit

sectors.

Word Count: (/5000)

Key Words: retinoblastoma, RB1 gene, bilateral, unilateral, DNA sequencing, genetic counselling,

prenatal screening.

3

Page 4: INTRODUCTION - sharedocs.ca file · Web viewKey Words: retinoblastoma, RB1 gene, bilateral, unilateral, DNA sequencing, genetic counselling, prenatal screening. ... pedigree: F445

Unstructured abstract

Abstract: (120/250)

Retinoblastoma is an intraocular malignancy that affects one or both eyes of young children, that is

initiated by biallelic mutation of the retinoblastoma gene (RB1) in a developing retinal cell. A good

understanding of retinoblastoma genetics supports optimal care for retinoblastoma children and their

families. In this scenario the genetics trait description was conducted by the conversation between a

family with a retinoblastoma child and their attending who is mostly the ophthalmologist but can be any

member of the retinoblastoma multidisciplinary team of physicians, nurses and genetic counselors. All the

questions are true and high frequently asked by the parents. This scenario aims to try to simplify the

information around genetics for ophthalmologists to help them improve their patient and family care.

bilateral, unilateral, DNA sequencing, genetic counseling prenatal screening

4

Gallie Brenda, 01/04/17,
Review articles should emphasize new developments and areas of controversy in clinical or laboratory ophthalmology. An unstructured abstract of no more than 250 words should be submitted on a separate page.
Page 5: INTRODUCTION - sharedocs.ca file · Web viewKey Words: retinoblastoma, RB1 gene, bilateral, unilateral, DNA sequencing, genetic counselling, prenatal screening. ... pedigree: F445

4134/5000 words

94/80 references

table x cTNMH

table x risk assessment derived from impact

table or discussion for surveillance for eye and lifetime

figure: small tumors and OCT image vs large tumors without surveillance

figure: pedigree: F445 parent of origin and lp

figure: pedigree potentially siotas?

Figure: potentially update to second cancers for Ramsey?

INTRODUCTION

Retinoblastoma is the most common childhood intraocular malignancy that affects one or both eyes.

{Dimaras, 2015 #10881} Because of the strong links between clinical care and genetic causation,

{Knudson, 1971 #11106} retinoblastoma is considered the prototype of heritable cancers.{Theriault, 2014

#8591} Worldwide, about 8,000 children are newly diagnosed with retinoblastoma every year (1/16,000

live births){Seregard, 2004 #10380;Dimaras, 2015 #10881} but most have no access to knowledge of the

key role of genetics in many aspects of retinoblastoma: clinical presentation, choice of treatment

modalities and follow-up for both child and family. We now highlight the genetic etiology of

retinoblastoma in the context of individual children and families, lead by the questions commonly asked

by parents.

What is retinoblastoma?

Retinoblastoma is a cancer that arises from a developing retinal cell in babies and young children.

Retinoblastoma can affect one (unilateral) or both eyes (bilateral) and in 5% of children is associated with

5

Gallie Brenda, 01/04/17,
We have not included floolowup for the eyes OR surveillance for second cancers.
Gallie Brenda, 01/04/17,
Organizing Text: Number the pages of the manuscript consecutively, beginning with the introduction as page 1. The text of an original article should not exceed 4,000 words with up to 8 images and tables and 50 references while that of a review article should not exceed 6,000 words with up to 8 images and tables and 100 references. FOR US 5,000 WORDS AND 80 REFS
Gallie Brenda, 01/04/17,
unfinished
Gallie Brenda, 01/04/17,
Delete redundant or not so important ones
Page 6: INTRODUCTION - sharedocs.ca file · Web viewKey Words: retinoblastoma, RB1 gene, bilateral, unilateral, DNA sequencing, genetic counselling, prenatal screening. ... pedigree: F445

a midline brain tumor (trilateral).{de Jong, 2014 #10885} Without timely and effective treatment,

retinoblastoma may spread through optic nerve to the brain, or via blood particularly to bone marrow,

which will result in death.

How can this cancer show up at such a young age?

The cell of origin of retinoblastoma is most likely a developing cone photoreceptor precursor cell that has

lost both copies of the RB1 tumor suppressor gene, and remains in the inner nuclear layer of the retina,

unable to migrate to the outer retina and function normally.{Dimaras, 2015 #10881;Rootman, 2013

#11096;Xu, 2014 #9924} The susceptible cell that becomes cancer is only present in the retinas of young

children, from before birth, up to around 7 years of age. Rarely, retinoblastoma is first diagnosed in older

persons, but likely there was previously an undetected small tumor (retinoma) present from childhood,

that later became active.{Gallie, 1982 #10343;Dimaras, 2008 #13250} The mean age at presentation is 1

year in bilateral disease and 2 years in unilateral disease.

What caused retinoblastoma? How can a gene cause cancer in a baby?

No one knows what really causes the damage to the RB1 gene. Maybe a random cosmic ray passes

through Planet Earth and hits that large, important gene. In nearly 50% of patients the first RB1 gene is

damaged in most, or all, normal cells, resulting in predisposition to retinoblastoma. A retinal tumor

develops when the second RB1 gene is also damaged in a developing retinal cell.{Dimaras, 2015 #10881}

The RB1 gene on chromosome 13q14 encodes the RB protein (pRB), an important regulator of the cell

division cycle in most cell types, and the first tumor suppressor gene discovered.{Friend, 1986 #10882}

Normally, dephosphorylated pRB represses expression of the E2F gene, thereby blocking cell division.

{Nevins, 2001 #15292;Cobrinik, 2005 #15298;Sage, 2012 #7850} To resume cell division, cyclin-

dependent kinases re-phosphorylate pRB, releasing expression of E2F.{Knudsen, 2008 #15310} In many

cell types, loss of the RB1 gene is compensated by increased expression of other related proteins.

However, in susceptible cells such as retinal cone cell precursors, compensatory mechanisms are not

sufficient, cell division is uncontrolled, and cancer is initiated.{Xu, 2014 #9924}

6

Page 7: INTRODUCTION - sharedocs.ca file · Web viewKey Words: retinoblastoma, RB1 gene, bilateral, unilateral, DNA sequencing, genetic counselling, prenatal screening. ... pedigree: F445

What causes retinoblastoma to be unilateral versus bilateral?

In heritable retinoblastoma (sometimes called germline retinoblastoma), the first RB1 allele (M1) is

mutant in all cells, including germline reproductive cells, while the second allele (M2) is mutated in the

retina initiating cancer. Often M2 event in the retinal cell is loss of the normal RB1 allele and duplication

of the mutant M1 allele (LOH, loss of heterozygosity). Heritable retinoblastoma encompasses 45% of all

reported cases.{MacCarthy, 2009 #8367;Moreno, 2014 #9935;Wong, 2014 #15170} with either bilateral

(80%), unilateral (15%) or trilateral (5%) tumors.{Dimaras, 2015 #10881} Germline retinoblastoma

carries risk of second primary cancers higher than normal, most commonly osteosarcoma, fibrosarcoma

and melanoma. These persons can benefit from regular surveillance for such cancers for their lifetime.

Of non-heritable retinoblastoma, 98% have RB1 M1 and M2 arise in a retinal cell. The remaining 2%

the retinoblastoma is induced by somatic amplification of the MYCN oncogene, in the presence of normal

RB1 genes.{Rushlow, 2013 #11102}” Germline retinoblastoma carries the risk of development of second

primary cancers, most commonly osteosarcoma and fibrosarcoma due to loss of RB1 gene. This is why

these children should be kept under surveillance for the rest of their lives.

What caused these mutations? Did I cause them?

No one is to blame for the mutations causing retinoblastoma. Many environmental forces induce DNA

damage, including cosmic rays, X-rays, DNA viruses, UV irradiation and smoking. The DNA damage

may be point mutations, small and large deletions, promotor methylation shutting down RB1 expression

and rarely, chromothripsis.{Lohmann, 1999 #9272;McEvoy, 2014 #8499} The majority of RB1 mutations

arise de novo, unique to a specific patient or family. However, some recurrent mutations are found in

unrelated individuals, such as those that affect 11 sites CpG DNA sequence sites, which are hyper-

mutable and make up 22% of all RB1 mutations.{Rushlow, 2009 #10337;Richter, 2003 #11998}

When there is no family history of retinoblastoma, a de novo RB1 germline mutation may arise either

pre- or post-conception. Pre-conception mutagenesis of RB1 usually occurs during spermatogenesis,

perhaps because cell division (and opportunity for mutation) is very active during spermatogenesis, but

7

Page 8: INTRODUCTION - sharedocs.ca file · Web viewKey Words: retinoblastoma, RB1 gene, bilateral, unilateral, DNA sequencing, genetic counselling, prenatal screening. ... pedigree: F445

not during oogenesis.{Zhu, 1989 #6514;Dryja, 1997 #15586;Munier, 1998 #10955} Advanced paternal

age increases risk for retinoblastoma,{Toriello, 2008 #15506} suggesting that base substitution errors

may increase in aging men. The affected child carries the de novo RB1 mutation in every cell, typically

presenting with 4-5 tumors and bilateral retinoblastoma. In contrast, if mutagenesis occurs post-

conception, during embryogenesis, only a portion (1-50%) of cells carrying the RB1 mutation and the

person will be mosaic for the RB1 mutation. If the mutation arises during retinal development, the child

will have unilateral retinoblastoma.{Dimaras, 2015 #10881}

So, only RB1 mutation causes retinoblastoma?

There are two answers to this question: (i) RB1 mutation only causes a benign precursor to

retinoblastoma, retinoma, and other genes are modified to cause progression to cancer;{Dimaras, 2008

#13250} and (ii) 2% of retinoblastoma have normal RB1 and are caused by a different gene.

In addition to loss of RB1, specific alterations in copy number of other genes are common in RB1-/-

retinoblastoma. There are gains (4-10 copies) in oncogenes MDM4, KIF14 (1q32), MYCN (2p24), DEK

and E2F3 (6p22), and loss of the tumor suppressor gene CDH11 (16q22-24).{Corson, 2007

#9909;Theriault, 2014 #8591} Other less common genomic alterations in retinoblastoma tumors include

differential expression of specific microRNAs{Huang, 2007 #8613} and recurrent single nucleotide

variants/insertion-deletions in the genes BCOR and CREBBP.{Kooi, 2016 #14338} In comparison to the

genomic landscape of other cancers, retinoblastoma is one of the least mutated.{Kooi, 2016 #14338}”

There is a newly recognized form of retinoblastoma with normal RB1 genes. Two percent of unilateral

patients have RB1+/+MYCNA tumors, with the MYCN oncogene is amplified (28-121 instead of the normal

2 DNA copies).{Rushlow, 2013 #11102} These children are diagnosed at median age 4.5 months

compared to 24 months for non-heritable unilateral RB-/- patients, and the tumors are distinct

histologically, with advanced features at diagnosis.

8

Gallie Brenda, 01/04/17,
Hilary, please write a sentence to describe the epigenetic changes in brief.
Page 9: INTRODUCTION - sharedocs.ca file · Web viewKey Words: retinoblastoma, RB1 gene, bilateral, unilateral, DNA sequencing, genetic counselling, prenatal screening. ... pedigree: F445

Retinoma is a premalignant precursor to retinoblastoma with characteristic clinical features:

translucent white mass, reactive retinal pigment epithelial proliferation and calcific foci.{Gallie, 1982

#10343} Pathology of retinoma reveals fleurettes{Tso, 1970 #3456} that are not proliferative.{Dimaras,

2008 #13250} Comparison of adjacent normal retina, retinoma and retinoblastoma shows in retinoma loss

of both RB1 alleles and early genomic copy number changes, that are amplified further in the adjacent

retinoblastoma.{Dimaras, 2008 #13250} Many retinoblastoma have underlying elements of retinoma.

Retinoma can transform to retinoblastoma even after many years of stability.{Theodossiadis, 2005

#5578}

Could we have discovered retinoblastoma earlier?

The only way to find retinoblastoma tumor early is to look with specific expertise, which we cannot

do for every child. If we know to look because a relative had retinoblastoma, the smallest visible tumors

are round, white retinal lesions that obscure the underlying choroidal pattern.

Centrifugal growth results in small tumors being round; more extensive growth produces lobular

growth, likely related to genomic changes in single (clonal) cells, that provide a proliferative advantage.

{Murphree, 2005 #11984;Balmer, 2006 #8323} Next, tumor seeds spread out of the main tumor a result

of poor cohesive forces between tumor cells into the subretinal space, or the vitreous cavity as appearing

as dust, spheres or tumor clouds.{Munier, 2014 #11111} Advanced vitreous tumor seeds can migrate to

the anterior chamber producing a pseudo-hypopyon. Enlarging tumor can push the iris lens diaphragm

forward causing angle closure glaucoma. Advanced tumors may induce iris neovascularization. Rapid

necrosis of tumor can cause an aseptic orbital inflammatory reaction resembling orbital cellulitis,

sometimes showing central retinal artery occlusion.{Balmer, 2007 #8320;Balmer, 2006 #8323;Murphree,

2005 #11984} Untreated, retinoblastoma spreads into the optic nerve and brain, or hematogenous spread

occurs through choroid, particularly to grow in bone marrow. Direct tumor growth through the sclera can

present as orbital extension and proptosis.

9

Page 10: INTRODUCTION - sharedocs.ca file · Web viewKey Words: retinoblastoma, RB1 gene, bilateral, unilateral, DNA sequencing, genetic counselling, prenatal screening. ... pedigree: F445

The earliest signs of retinoblastoma detectable by parents are leukocorea (white pupil), either

directly or in photographs (photo-leukocorea) and strabismus when the macula is involvement by tumor.

{Balmer, 2007 #8320} In developing countries, buphthalmos and proptosis due to advanced and

extraocular disease respectively is common.{Canturk, 2010 #13461} Less common presentations include;

heterochromia irides, neovascular glaucoma, vitreous hemorrhage, hypopyon or aseptic orbital cellulitis.

{Balmer, 2007 #8320} Retinoblastoma (unilateral or bilateral) might be associated with a brain tumor in

the pineal, suprasellar or parasellar regions (Trilateral retinoblastoma){Popovic, 2007 #9156;Antoneli,

2007 #10877} with the median age of diagnsosis 17 months after retinoblastoma and before the age of 5

years. Retinoblastoma might present as 13q deletion syndrome, with facial features and various degrees

of hypotony and mental retardation.{Baud, 1999 #8118;Bojinova, 2001 #13205;Skrypnyk, 2004 #5276}

The main differential diagnosis includes Coats’ disease, persistent hyperplastic primary vitreous and

ocular toxicariasis.{Balmer, 2007 #8320}

Do all affected individuals with RB1 mutations develop retinoblastoma?

Depending on the exact RB1 mutation, most, but not all, carriers of RB1 mutation will develop

retinoblastoma and other cancers throughout life.

Each offspring of a person carrying an RB1 mutant gene has 50% risk to inherit the RB1 mutant gene

[Figure # Pedigree – full penetrance]. Nonsense and frame-shift germline mutations, which lead to absent

or truncated dysfunctional pRB, result in 90% bilateral retinoblastoma (nearly complete penetrance).

Often the second mutational event in the retinal cell is loss of the second RB1 allele (LOH, loss of

heterozygosity). For partially functional RB1 mutant alleles, reduced penetrance and expressivity is

observed, with later onset and fewer tumors{Soliman, 2016 #15159}, and some carriers never develop

retinoblastoma. Some reduced penetrance mutations reduce RB1 protein expression: (i) mutations in

exons 1 and 2,{Sanchez-Sanchez, 2007 #6108} (ii) mutations near the 3’ end of the gene in exons 24 to

27,{Bremner, 1997 #12040;Mitter, 2009 #7216} (iii) splice and intronic mutations{Zhang, 2003

#8986;Schubert, 1997 #4830;Lefevre, 2002 #4903} and (iv) missense mutations.{Scheffer, 2000

10

Page 11: INTRODUCTION - sharedocs.ca file · Web viewKey Words: retinoblastoma, RB1 gene, bilateral, unilateral, DNA sequencing, genetic counselling, prenatal screening. ... pedigree: F445

#15178;Cowell, 1998 #10958} Strangely, large deletions encompassing RB1 gene and MED1 gene also

cause reduced expressivity/penetrance, because RB1-/- cells cannot survive in the absence of MED4.

{Dehainault, 2014 #12140;Bunin, 1989 #4280} In comparison, patients with large deletions with one

breakpoint in the RB1 gene typically present with bilateral disease.{Mitter, 2011 #7339;Matsunaga, 1980

#357;Albrecht, 2005 #10898} A measure of expressivity of a mutant retinoblastoma allele is the disease-

eye-ratio (DER) (number of eyes affected with tumor divided by the total number of eyes in carriers of

the mutation).{Lohmann, 1994 #10954}

There are two specific RB1 mutations showing a parent-of-origin effect: intron 6 c.607+1G>T

substitution{Klutz, 2002 #8593;Schuler, 2005 #5551} [Figure # Pedigree – reduced penetrance family

with parent of origin….] and c.1981C>T (p.Arg661Trp).{Eloy, 2016 #12079} Both may be explained by

at differential methylation of intron 2 CpG85, which skews RB1 expression in favor of the maternal allele.

{Buiting, 2010 #7661;Kanber, 2009 #16381} When the allele is maternally inherited there is sufficient

tumor suppressor activity to prevent retinoblastoma development and 90% of carriers remain unaffected.

However, when the p.Arg661Trp allele is paternally transmitted, very little RB1 is expressed, leading

retinoblastoma in 68% of carriers.

What are the treatments and what governs the choice?

Treatment and prognosis depend on the stage of disease at initial presentation. Factors predictive of

outcomes include size, location of tumor origin, extent of subretinal fluid, presence of tumor seeds and

the presence of high risk features on pathology.{Mallipatna, 2017 #14252} Multiple staging systems have

predicted likelihood to salvage an eye without using radiation therapy, but published evidence is

confusing because significantly different versions have emerged.{Dimaras, 2015 #10881;Mallipatna,

2017 #14252} The 2017 TNMH classification is based on international consensus and evidence from an

international survey of 1728 eyes, and separates more clearly initial clinical and pathological features

relevant to outcomes, in retrospective comparison to 5 previous eye staging systems.{Mallipatna, 2017

#14252} (Table X)

11

Page 12: INTRODUCTION - sharedocs.ca file · Web viewKey Words: retinoblastoma, RB1 gene, bilateral, unilateral, DNA sequencing, genetic counselling, prenatal screening. ... pedigree: F445

Retinoblastoma is the first cancer in which staging recognizes the impact of genetic status on

outcomes: presence of a positive family history, bilateral or trilateral disease or high sensitivity positive

RB1mutation testing, is stage H1; without these features bfore testing blood, HX; and H0 for those

relatives shown to not carry the proband’s specific RB1 mutation.{Mallipatna, 2017 #14252} We propose

H0* for patients with M1 and M2 RB1 mutant alleles of the tumor not detectable in blood, but with

remaining low risk (<1%) of mosaicism.

Choice of treatment depends on the laterality of disease, tumor stage and genetic status. Focal therapy

only can control cT1a eyes, but visually threatening or large cT1b tumors and cT2 eyes need

chemotherapy (systemic or intra-arterial chemotherapy) to reduce the size of the tumor followed by

consolidation focal therapies (laser therapy or cryotherapy) as initial treatment. Enucleation of eyes with

advanced tumors in unilateral disease where the other eye is normal is a definitive cure.{Dimaras, 2015

#10881} Ancillary therapies for specific indications include plaque radiotherapy and periocular

chemotherapy. Intravitreal chemotherapy for vitreous disease has recently dramatically improved safe eye

salvage.{Munier, 2012 #8588;Munier, 2012 #8587} For persons carrying RB1 mutations, external beam

radiation therapy is rarely indicated due to the high risk of inducing later second cancers.{Dimaras, 2015

#10881}

Saving life is the priority of retinoblastoma treatment, followed by vision salvage; the least important

is eye salvage. The child’s job is to play and develop in a healthy life; the many procedures and their

complications that may span years for at best a 50% chance to save a blind eye with risk of tumor spread,

are not justified, especially when the other eye is normal.{Soliman, 2015 #10948;Soliman, 2016 #14269}

However, often missing from choices in the complex care of children with retinoblastoma are the

truly informed parents. Essentially, the doctors decide, based on very little evidence, what treatment they

“feel” is best. There exists no easy way to show the parents prospectively the true “costs” of each

treatment: the burden of invasive therapies and potential complications; the imposition of hours and days

in hospitals and feeling ill on the child, whose real job in those critical, irreplaceable years, is to play; the

12

Page 13: INTRODUCTION - sharedocs.ca file · Web viewKey Words: retinoblastoma, RB1 gene, bilateral, unilateral, DNA sequencing, genetic counselling, prenatal screening. ... pedigree: F445

true costs including time off work, uncertainties; and the burden of “false hope” in the absence of real

evidence. There are imminent solutions on the horizon, such as eCancerCare encompassing the whole

medical record for a lifetime with retinoblastoma, viewable on line by the family and patient, and the

burgeoning field of patient reported outcomes. These new attitudes and tools may empower in the future

good choices by parents for their child and family.

Is retinoblastoma lethal?

If untreated, retinoblastoma is lethal. If treated before metastasis occurs, cure is nearly 100%. Globally,

the chance for cure is even more remote, and lack of knowledge of genetics results too often in death of

many children who could have been saved if they had surveillance and definitive treatment when tumors

were small. If metastasis occurs, the treatment becomes challenging and there is around 40% chance of

mortality. Delayed diagnosis and treatment due to lack of knowledge by ophthalmologists and parents,

socioeconomic{Soliman, 2015 #10948} and cultural factors are major causes of mortality. Asia and

Africa have the highest mortality, with >70% of affected children dying of retinoblastoma, compared

with <5% in developed countries.{Chantada, 2011 #13420;Canturk, 2010 #13461} ibute to reducing

mortality from retinoblastoma.

Germline retinoblastoma carries the risk of development of second primary cancers, most commonly

leiomyosarcoma, osteosarcoma, and melanoma.{MacCarthy, 2013 #11093} When the enormous impact

of external beam irradiation was recognized after 30 years of being used on every child, it was recognized

that more children with bilateral retinoblastoma (H1) were dying of their second (third, etc) cancer than of

retinoblastoma.{Eng, 1993 #10933}

Occasionally metastatic retinoblastoma may confused with a second cancer; blue round cell tumors on

cytopathology may not differentiate from retinoblastoma, but molecular demonstration of the same RB1

mutations as the intraocular retinoblastoma will confirm metastases.{Racher, 2016 #13990}

13

Gallie Brenda, 01/04/17,
This whole nice little “editorial” does not really belong in this review of genetics…..?????
Page 14: INTRODUCTION - sharedocs.ca file · Web viewKey Words: retinoblastoma, RB1 gene, bilateral, unilateral, DNA sequencing, genetic counselling, prenatal screening. ... pedigree: F445

How can we test for retinoblastoma mutations?

If the patient is bilaterally affected, the probability of finding a germline mutation in the RB1 gene in

DNA extracted from blood is high (97% in a comprehensive RB1 laboratory). In 3% of bilateral

retinoblastoma patients, the predisposing RB1 mutation may be mosaic at a low level. Identification of

M1 and M2 RB1 mutations in DNA from tumor lead to identification of a germline mutation.{Astudillo,

2014 #10893;Rushlow, 2009 #10337;Canadian Retinoblastoma, 2009 #14251}

Similarly, to detect the 15% of unilateral patients carrying a germline mutation, optimal strategy is to

first tumor DNA, then check for those mutations in blood. If the blood is not found to carry one of the

tumor RB1 mutations, risk of germline status is reduced to <1% (Table) for parents, siblings and cousins.

{Canadian Retinoblastoma, 2009 #14251}

Quality of genetic results depends on quality of DNA. Fresh or frozen tumor samples are fine, but

formalin fixed paraffin embedded tumors generally produce highly degraded DNA. For blood genomic

whole blood in EDTA or ACD, provide high quality DNA.{Banfi, 2007 #15789}

The RB1 gene can be mutated in many ways, best identified by a series of techniques. Single

nucleotide variants (SNVs) and small insertions/deletions can be identified by DNA sequencing (Sanger

dideoxy-sequencing or next-generation sequencing (NGS) methods.{Singh, 2016 #19381;Li, 2016

#19404;Chen, 2014 #19419} The most appropriate technology depends on the clinical question being

asked. NGS may be the most effective screening strategy to investigate for an unknown de novo mutation

in an affected proband, and may have a lower limit of detection (analytic sensitivity) for mosaic

mutations.{Chen, 2014 #14457} To screen family members for a known sequencing-detectable RB1

mutation, targeted Sanger sequencing is cost and time effective.

Large RB1 deletions or duplications that span whole exons or multiple exons typically cannot be

detected by DNA sequencing. Multiplex ligation-dependent probe amplification (MLPA), quantitative

multiplex PCR (QM-PCR) or array comparative genomic hybridization (aCGH) are used identify RB1

deletions and duplications, and other genomic copy number alterations, such as MYCN amplification.

14

Page 15: INTRODUCTION - sharedocs.ca file · Web viewKey Words: retinoblastoma, RB1 gene, bilateral, unilateral, DNA sequencing, genetic counselling, prenatal screening. ... pedigree: F445

New developments in bioinformatics analysis suggest that NGS data can be interrogated for copy number

variants,{Devarajan, 2015 #9654;Li, 2016 #14646} but sensitivity is not yet optimized.

Somatic mosaicism can arise in either the presenting patient or their parent. Allele-specific PCR (AS-

PCR) has excellent sensitivity when the RB1 mutation is known,{Rushlow, 2009 #10337} and with

primers specific to the mutation can detect as low as 1% mosaicism.

The second mutational event in 70% of retinoblastoma tumors is loss of heterozygosity (LOH), a

common event associated with loss of the normal allele in tumor from individuals with an inherited

cancer predisposition syndrome.{Cavenee, 1983 #9210} Microsatellite marker analysis is also important

in identity testing and in maternal cell contamination in prenatal diagnostic tests.

Epigenetic changes can also initiate retinoblastoma development.{Ohtani-Fujita, 1993 #2258}

Hypermethylation of the RB1 promoter CpG island results in inhibition of RB1 gene transcription in 10-

12% of retinoblastoma tumors, commonly involving both alleles.{Richter, 2003 #11998;Zeschnigk, 1999

#15496} This epigenetic gene silencing event primarily occurs in somatic cells, but heritable RB1

promoter mutations and translocations disrupting RB1 regulatory sites may cause RB1 promoter

hypermethylation.{Quinonez-Silva, 2016 #12111} Occasionally hypermethylation of the RB1 promotor

is found in blood, strongly suggestion the presence of a translocation, for example to the X Chromosome.

Rarely, no RB1 mutation is identified in the coding, promoter or flanking intronic sequence in blood

from a bilateral patient. Deep intronic sequencing alterations that disrupt RB1 transcription by interfering

with correct splicing in patients with retinoblastomaare best detected by analysis of the RB1 transcript by

reverse-transcriptase PCR (RT-PCR).{Zhang, 2008 #7502;Dehainault, 2007 #5872} RNA studies also

clarify pathogenicity of intronic sequence alterations.{Zhang, 2008 #7502;Dehainault, 2007 #5872} As

NGS costs continue to decrease, whole genome sequencing (WGS) may uncover deep intronic changes.

Karyotype, fluorescent in situ hybridization (FISH) or array comparative genomic hybridization

(aCGH) of peripheral blood lymphocytes can be used to identify large deletions and rearrangements in

15

Gallie Brenda, 01/05/17,
Hilary and heather, I know we have one case at least and there was one in the literature which I can not find!Can you look?
Page 16: INTRODUCTION - sharedocs.ca file · Web viewKey Words: retinoblastoma, RB1 gene, bilateral, unilateral, DNA sequencing, genetic counselling, prenatal screening. ... pedigree: F445

patient’s suspected of 13q14 deletion syndrome.{Caselli, 2007 #15862;Mitter, 2011 #7339} In parents of

13q14 deletion patients, karyotype analysis discover balanced translocations in carriers, informing about

risk of retinoblastoma in subsequent generations.{Baud, 1999 #8118}

What is done after finding the RB1 mutation?

Family members at risk to also carry the identified RB1 mutation are offered testing on blood samples

(Table from impact…).{Canadian Retinoblastoma, 2009 #14251;Dimaras, 2015 #10881} If the mutation

is found in neither parent, a small risk of low level mosaicism still exists, leaving a low level risk for

siblings. Offspring of any family member carrying the RB1 mutation can be tested during pregnancy or

immediately after birth (see below). If the proband is mosaic for the RB1 mutation, parents and siblings of

the proband are not at risk, since mosaicism cannot be inherited. However, the children of a mosaic

proband need testing as early as possible, as their risk to inherit the predisposing RB1 mutation is up to

50%; if they do carry the mutation, they are at risk for bilateral retinoblastoma.

Can we use the known mutation to test my future children?

Prenatal genetic testing is can be performed in the course of the pregnancy. Two early procedures are

available: i) chorionic villus sampling (CVS) performed between 11-14 weeks gestation, obtaining a

sample of the placenta by either trans-vaginally or trans-abdominally; and ii) amniocentesis after 16

weeks gestation obtains amniotic fluid trans-abdominally. The procedure-associated risk of miscarriage

of CVS is 1%, of amniocentesis 0.1-0.5%. Maternal cell contamination of the sample is more frequently

with CVS,{Akolekar, 2015 #9479} and is checked for in the clinical molecular lab.

If the fetus does not carry the mutation, the pregnancy can proceed with no further intervention. If fetus

carries the familial mutation the parents have several choices. Some may decide to stop the pregnancy,

while others may know they wish continue the pregnancy regardless of test results. If the parents are

concerned of the risk of miscarriage they can consider late amniocentesis between 30-34 weeks gestation

when the major complication is early delivery rather than miscarriage.{Akolekar, 2015 #9479}. Prenatal

16

Hilary Racher, 01/01/17,
Should I use the new Skalet table instead?
Sameh Soliman, 01/01/17,
Can you write this down Hilary. I think this already available on Impacts website.
Sameh Gaballah, 01/01/17,
References Jeffrey.
Page 17: INTRODUCTION - sharedocs.ca file · Web viewKey Words: retinoblastoma, RB1 gene, bilateral, unilateral, DNA sequencing, genetic counselling, prenatal screening. ... pedigree: F445

or postnatal RB1 mutation testing will either show the baby to be “H0” (for the family RB1 mutation) or

“H1”, confirmed to carry the mutation. If the fetus has the family RB1 mutation, early pre-term delivery

achieves smaller tumors and with higher treatment success, eye preservation and visual outcome than

delivery at full term.{Soliman, 2016 #15159}

In many countries, the option for prenatal genetic testing is not available, and some parents may chose

to not do prenatal invasive testing. If the risk for retinoblastoma in the fetus is 50% it is important that

the pregnancy not go past 40 weeks.{Soliman, 2016 #15159;Canadian Retinoblastoma, 2009 #14251}

Can we plan our next pregnancy to passing on this RB1 mutation?

In some countries, preimplantation genetic diagnosis (PGD) with in vitro fertilization is an option.

{Dhanjal, 2007 #9216;Dommering, 2004 #10248;Xu, 2004 #9246;Girardet, 2003 #9219} Conceptions

are tested for the familial mutation at an early stage of development (typically 8 cells). Those that do not

carry the RB1 mutation are implanted. The procedure is costly, ranging from $10,000-$15,000 per cycle;

in some countries, there may be full or partial coverage of the costs. The full medical implications of PGD

are not yet understood; there is emerging evidence of a low risk for epigenetic changes in the conception

as a result of the procedure. It is recommended that typical prenatal testing be pursued during the course

of the pregnancy to confirm the results.{Dhanjal, 2007 #9216;Dommering, 2004 #10248;Girardet, 2003

#9219;Xu, 2004 #9246}

What is genetic counseling?

Genetic counseling is a psychosocial and educational process for patients and families to help them adapt

to the genetic risk, the genetic condition, and the process of informed decision-making.{Uhlmann, 2009

#15690;Shugar, 2016 #15715;Shugar, 2016 #15725} When genetic testing is not available or

unaffordable, genetic counseling is still very important.

Concrete knowledge of the genetic test outcomes supports informed and precise genetic counseling

and the specificity reduces the need for other possible scenarios to be discussed. Genetic testing to

17

Hilary Racher, 01/01/17,
CDN or US $?
Page 18: INTRODUCTION - sharedocs.ca file · Web viewKey Words: retinoblastoma, RB1 gene, bilateral, unilateral, DNA sequencing, genetic counselling, prenatal screening. ... pedigree: F445

support precision medicine for only those who need it (carry the RB1 mutant allele) is more cost effective

than examining all at-risk family members.{Noorani, 1996 #13637;Richter, 2003 #11998}

If we know the mutation prenatally, is there any treatment to prevent retinoblastoma from occurring?

Today there is no prevention of retinoblastoma, only treatment when the tumors are very small, even

invisible. But ……..bg to write

Are these tests available worldwide?

High sensitivity RB1 mutation testing is established in core labs mainly in high-income countries.{, 2015

#10824} In low- and middle-income countries, genetic counseling as a specialty does not exist, so many

families with retinoblastoma children do not understand the benefits of genetic testing and counseling in

retinoblastoma treatment and follow-up.{Dimaras, 2015 #10881} In many places, existing health

insurance does not cover costs of genetic testing. Given all these obstacles, there is limited application of

genetic testing and genetic counseling worldwide, overall health care costs are increased to deal with late

diagnoses, increasing economic burden on affected families. The Chinese government’s new policy to

allow families to have one more child will make the need to genetic testing and counseling even more

iimportant. A novel international collaboration between the companies Impact Genetics in Canada and

Geneseeq in China is optimizing expertise to achieve high quality RB1 testing for families.

In Egypt{Soliman, 2016 #14713} genetic testing for retinoblastoma is not available and genetic

counseling is the only way to address the issues. Ophthalmologists with insufficient training in

retinoblastoma genetics are burdened with the task. Genetic counseling was found to increase knowledge

gaps remained in translation of this knowledge into appropriate screening action.{Soliman, 2016 #14713}

Retinoblastoma genetics is a core element in care of retinoblastoma patients and their families. Action

based on knowledge of genetics in retinoblastoma improves outcomes for the eye, life and points to life

18

Sameh Gaballah, 01/01/17,
References Jeffrey.
Sameh Gaballah, 01/01/17,
Is it presumed or sure?
Sameh Gaballah, 01/01/17,
I need a hint to references from here.
Sameh Gaballah, 01/01/17,
Reference?
Sameh Gaballah, 01/01/17,
I am finding difficulty citing here Hilary. Can you please give me any hints about the papers?
Sameh Gaballah, 01/01/17,
Hilary, please organize this part
Sameh Gaballah, 01/01/17,
-?A and B pockets-Also describe the role in genomic instability (Demaris. Rushlow)
Sameh Gaballah, 01/01/17,
I think this comes after Knudson hyposthesis and before the penetrance.
Hilary Racher, 01/01/17,
Moved to RB1 mutation section
Sameh Gaballah, 01/01/17,
Hilary, Can you please write a small paragraph explaining this with citations?
Sameh Gaballah, 01/01/17,
I preferred putting this here. Open for discussion.
Sameh Gaballah, 01/01/17,
Can we delete unilateral?
Sameh Gaballah, 01/01/17,
Please Hilary, can we rephrase to a simpler sentence?
Hilary Racher, 01/01/17,
Sameh – add section on retinoma
Hilary Racher, 01/01/17,
Sameh – define true H0 (*) vs most likely H0
Sameh Soliman, 01/01/17,
Table attached
Sameh Soliman, 01/01/17,
I would recommend a figure to show clinical features. BG: NO, this will be elsewhere in the revie issue. We chould stick to genetics.BG: not sure, this is one article in a review issue where we are assigned the genetics…..
Hilary Racher, 01/01/17,
Jeffry - Build more details from the Dimaris Nature Primer paper into this paragraph
Sameh Gaballah, 01/01/17,
I would remove eye salvage because in developing countries the concept of eye salvage before mortality should be changed. I prefer to speak on mortality only as the paragraph started.
Sameh Gaballah, 01/01/17,
I still think that this is an over-statement. I don’t think this number is true? What is your reference here Jeffrey??
Sameh Soliman, 01/01/17,
I find this a common question asked. We can answer Not yet, but there is research going on to target the epigenetic changes and MYCN. If approve this question, Hilary can add a line here ?She will add the epigenetic changes previously and can add what possible mechanisms here.
Sameh Gaballah, 01/01/17,
Is it presumed or sure?
Page 19: INTRODUCTION - sharedocs.ca file · Web viewKey Words: retinoblastoma, RB1 gene, bilateral, unilateral, DNA sequencing, genetic counselling, prenatal screening. ... pedigree: F445

and treatment strategies to reduce early mortality and alleviate suffering. The whole family benefits

economically and in health, by precision in diagnosis of risk based on testing to establish who carries the

RB1 cancer-predisposing gene (H1), who does NOT carry the gene (H0), who has <1% risk to carry the

gene (H0*) and who is not tested so at unknown risk (HX). Knowedge of the test results alleviates the

psychological burden of the families regarding moving forward with their life choices regarding the

affected child and future siblings and exposure to environmental carcinogens for the whole family.

Table X:

Subretinal Fluid (RD)

No≤ 5 mm

>5 mm - ≤ 1 quadrant

> 1quadran

t

Tum

or

Tumors ≤ 3 mm and further than 1.5 mm from the disc and fovea cT1a/A cT1a/B cT2a/C cT2a/D

Tumors > 3 mm or closer than 1.5 mm to the disc and fovea cT1b/B cT1b/B cT2a/C cT2a/D

Se

edin

g Localized vitreous/ subretinal seeding cT2b/C cT2b/C cT2b/C cT2b/Ddiffuse vitreous/subretinal seeding cT2b/D

High

risk

feat

ures

Phthisis or pre-phthisis bulbi cT3a/ETumor invasion of the pars plana, ciliary body, lens, zonules, iris or anterior chamber cT3b/ERaised intraocular pressure with neovascularization and/or buphthalmos cT3c/EHyphema and/or massive vitreous hemorrhage cT3d/EAseptic orbital cellulitis cT3e/EDiffuse infiltrating retinoblastoma ??/E

Extraocular retinoblastoma cT4/??

clinical T (cT) versus International Intraocular retinoblastoma Classification (IIRC) (cT/IIRC); ?? Not

applicable ; RD Retinal detachment

19

Gallie Brenda, 01/05/17,
Sameh this is wrong!