iopener workbench: tools for rapid understanding of scientific literature cody dunne, ben...
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iOpener Workbench Tools for Rapid Understanding of Scientific Literature
Cody Dunne Ben Shneiderman Bonnie Dorr amp Judith Klavans cdunne ben bonniecsumdedu jklavansumdedu
27th Annual Human-Computer Interaction Lab SymposiumMay 27-28 2010 College Park MD
iOpener Workbench
Contribution
bull Infrastructure for rapidly summarizing scientific endeavorndash Integrate statistics visualization reference
management and automatic summarizationndash Multiple coordinated views
Use Cases
bull Learn about new fieldsbull Understand how communities formbull Analyze citation patterns within communitiesbull Easily explore amp export all papers in a
community
What we integrate
bull Potent network analysis tool ndash SocialActionndash Citation network statistics amp visualizationndash Automatic community detection amp visualization
bull Reference amp document management ndash JabRefndash Powerful reference manager with extensive features
for search grouping review annotation and export bull Document view with citation linking amp highlightbull Automatically generated summariesndash Citation text keywords abstracts
What can you do with a graph
bull Statistics lists and text is helpful butbull Visualizations show unexpected trends
clusters gaps outliersbull Data cleaning amp verificationbull ldquoInformation visualization answers questions
you didnt know you hadrdquo ndash Ben S
Importance of Survey Articles
bull Rapidly expanding disciplinesbull Large volume of scientific publicationsbull Increasing cross-disciplinary researchbull Need for accurate surveys of previous workndash Short summariesndash In-depth historical notes
bull Multiple usersndash Scientistsndash Students amp Educatorsndash Government decision makers
iOPENER
bull NSF Info Integration amp Informatics program bull Information Organization for PENning
Expositions on Research
Components
bull Bibliometric lexical link miningbull Automatic summarization techniquesbull Visualization tools for structure and content
Ongoing Work
bull Increase preprocessing of citation texts to vastly improve trimmer summary comprehension
bull Preliminary case studies with UMD student domain expertsndash Dependency parsing subset of the ACL Anthology
Network (AAN)
Coming Soon
bull Multi-dimensional in-depth long-term case studiesndash longitudinal case studies with domain experts
using their datandash close participant observation
bull Software amp generated surveys publicly available and presented to academia and wider audiences
iOpener Workbench
bull Infrastructure to aid rapid summarization of scientific literature
bull Integratesndash Statisticsndash Visualizationndash Reference managementndash Automatic summarization
iOpener Workbench Tools for Rapid Understanding of Scientific Literature
Cody Dunne Ben Shneiderman Bonnie Dorr amp Judith Klavans cdunne ben bonniecsumdedu jklavansumdedu
tangrasiumicheduclairiopener
This work has been partially supported by NSF grant iOPENER A Flexible Framework to Support Rapid Learning in Unfamiliar Research
Domains jointly awarded to UMD and UMich as IIS 0705832
Network Analysis
Reference Manager
Document amp Citation View
Summarization
Features ndash Network analysis
bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)
bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic
Features ndash Reference Manager
bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008
bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export
Document view - features
bull Citation linksbull Highlighting
Summarization - Features
bull Automatically generated summaries Citation text keywords abstracts
bull Working to substantially improve coherence amp relevance
- iOpener Workbench Tools for Rapid Understanding of Scientific
- iOpener Workbench
- Contribution
- Use Cases
- What we integrate
- What can you do with a graph
- Importance of Survey Articles
- iOPENER
- Components
- Ongoing Work
- Coming Soon
- iOpener Workbench (2)
- iOpener Workbench Tools for Rapid Understanding of Scientific (2)
- Network Analysis
- Reference Manager
- Document amp Citation View
- Summarization
- Features ndash Network analysis
- Features ndash Reference Manager
- Document view - features
- Summarization - Features
-
iOpener Workbench
Contribution
bull Infrastructure for rapidly summarizing scientific endeavorndash Integrate statistics visualization reference
management and automatic summarizationndash Multiple coordinated views
Use Cases
bull Learn about new fieldsbull Understand how communities formbull Analyze citation patterns within communitiesbull Easily explore amp export all papers in a
community
What we integrate
bull Potent network analysis tool ndash SocialActionndash Citation network statistics amp visualizationndash Automatic community detection amp visualization
bull Reference amp document management ndash JabRefndash Powerful reference manager with extensive features
for search grouping review annotation and export bull Document view with citation linking amp highlightbull Automatically generated summariesndash Citation text keywords abstracts
What can you do with a graph
bull Statistics lists and text is helpful butbull Visualizations show unexpected trends
clusters gaps outliersbull Data cleaning amp verificationbull ldquoInformation visualization answers questions
you didnt know you hadrdquo ndash Ben S
Importance of Survey Articles
bull Rapidly expanding disciplinesbull Large volume of scientific publicationsbull Increasing cross-disciplinary researchbull Need for accurate surveys of previous workndash Short summariesndash In-depth historical notes
bull Multiple usersndash Scientistsndash Students amp Educatorsndash Government decision makers
iOPENER
bull NSF Info Integration amp Informatics program bull Information Organization for PENning
Expositions on Research
Components
bull Bibliometric lexical link miningbull Automatic summarization techniquesbull Visualization tools for structure and content
Ongoing Work
bull Increase preprocessing of citation texts to vastly improve trimmer summary comprehension
bull Preliminary case studies with UMD student domain expertsndash Dependency parsing subset of the ACL Anthology
Network (AAN)
Coming Soon
bull Multi-dimensional in-depth long-term case studiesndash longitudinal case studies with domain experts
using their datandash close participant observation
bull Software amp generated surveys publicly available and presented to academia and wider audiences
iOpener Workbench
bull Infrastructure to aid rapid summarization of scientific literature
bull Integratesndash Statisticsndash Visualizationndash Reference managementndash Automatic summarization
iOpener Workbench Tools for Rapid Understanding of Scientific Literature
Cody Dunne Ben Shneiderman Bonnie Dorr amp Judith Klavans cdunne ben bonniecsumdedu jklavansumdedu
tangrasiumicheduclairiopener
This work has been partially supported by NSF grant iOPENER A Flexible Framework to Support Rapid Learning in Unfamiliar Research
Domains jointly awarded to UMD and UMich as IIS 0705832
Network Analysis
Reference Manager
Document amp Citation View
Summarization
Features ndash Network analysis
bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)
bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic
Features ndash Reference Manager
bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008
bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export
Document view - features
bull Citation linksbull Highlighting
Summarization - Features
bull Automatically generated summaries Citation text keywords abstracts
bull Working to substantially improve coherence amp relevance
- iOpener Workbench Tools for Rapid Understanding of Scientific
- iOpener Workbench
- Contribution
- Use Cases
- What we integrate
- What can you do with a graph
- Importance of Survey Articles
- iOPENER
- Components
- Ongoing Work
- Coming Soon
- iOpener Workbench (2)
- iOpener Workbench Tools for Rapid Understanding of Scientific (2)
- Network Analysis
- Reference Manager
- Document amp Citation View
- Summarization
- Features ndash Network analysis
- Features ndash Reference Manager
- Document view - features
- Summarization - Features
-
Contribution
bull Infrastructure for rapidly summarizing scientific endeavorndash Integrate statistics visualization reference
management and automatic summarizationndash Multiple coordinated views
Use Cases
bull Learn about new fieldsbull Understand how communities formbull Analyze citation patterns within communitiesbull Easily explore amp export all papers in a
community
What we integrate
bull Potent network analysis tool ndash SocialActionndash Citation network statistics amp visualizationndash Automatic community detection amp visualization
bull Reference amp document management ndash JabRefndash Powerful reference manager with extensive features
for search grouping review annotation and export bull Document view with citation linking amp highlightbull Automatically generated summariesndash Citation text keywords abstracts
What can you do with a graph
bull Statistics lists and text is helpful butbull Visualizations show unexpected trends
clusters gaps outliersbull Data cleaning amp verificationbull ldquoInformation visualization answers questions
you didnt know you hadrdquo ndash Ben S
Importance of Survey Articles
bull Rapidly expanding disciplinesbull Large volume of scientific publicationsbull Increasing cross-disciplinary researchbull Need for accurate surveys of previous workndash Short summariesndash In-depth historical notes
bull Multiple usersndash Scientistsndash Students amp Educatorsndash Government decision makers
iOPENER
bull NSF Info Integration amp Informatics program bull Information Organization for PENning
Expositions on Research
Components
bull Bibliometric lexical link miningbull Automatic summarization techniquesbull Visualization tools for structure and content
Ongoing Work
bull Increase preprocessing of citation texts to vastly improve trimmer summary comprehension
bull Preliminary case studies with UMD student domain expertsndash Dependency parsing subset of the ACL Anthology
Network (AAN)
Coming Soon
bull Multi-dimensional in-depth long-term case studiesndash longitudinal case studies with domain experts
using their datandash close participant observation
bull Software amp generated surveys publicly available and presented to academia and wider audiences
iOpener Workbench
bull Infrastructure to aid rapid summarization of scientific literature
bull Integratesndash Statisticsndash Visualizationndash Reference managementndash Automatic summarization
iOpener Workbench Tools for Rapid Understanding of Scientific Literature
Cody Dunne Ben Shneiderman Bonnie Dorr amp Judith Klavans cdunne ben bonniecsumdedu jklavansumdedu
tangrasiumicheduclairiopener
This work has been partially supported by NSF grant iOPENER A Flexible Framework to Support Rapid Learning in Unfamiliar Research
Domains jointly awarded to UMD and UMich as IIS 0705832
Network Analysis
Reference Manager
Document amp Citation View
Summarization
Features ndash Network analysis
bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)
bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic
Features ndash Reference Manager
bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008
bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export
Document view - features
bull Citation linksbull Highlighting
Summarization - Features
bull Automatically generated summaries Citation text keywords abstracts
bull Working to substantially improve coherence amp relevance
- iOpener Workbench Tools for Rapid Understanding of Scientific
- iOpener Workbench
- Contribution
- Use Cases
- What we integrate
- What can you do with a graph
- Importance of Survey Articles
- iOPENER
- Components
- Ongoing Work
- Coming Soon
- iOpener Workbench (2)
- iOpener Workbench Tools for Rapid Understanding of Scientific (2)
- Network Analysis
- Reference Manager
- Document amp Citation View
- Summarization
- Features ndash Network analysis
- Features ndash Reference Manager
- Document view - features
- Summarization - Features
-
Use Cases
bull Learn about new fieldsbull Understand how communities formbull Analyze citation patterns within communitiesbull Easily explore amp export all papers in a
community
What we integrate
bull Potent network analysis tool ndash SocialActionndash Citation network statistics amp visualizationndash Automatic community detection amp visualization
bull Reference amp document management ndash JabRefndash Powerful reference manager with extensive features
for search grouping review annotation and export bull Document view with citation linking amp highlightbull Automatically generated summariesndash Citation text keywords abstracts
What can you do with a graph
bull Statistics lists and text is helpful butbull Visualizations show unexpected trends
clusters gaps outliersbull Data cleaning amp verificationbull ldquoInformation visualization answers questions
you didnt know you hadrdquo ndash Ben S
Importance of Survey Articles
bull Rapidly expanding disciplinesbull Large volume of scientific publicationsbull Increasing cross-disciplinary researchbull Need for accurate surveys of previous workndash Short summariesndash In-depth historical notes
bull Multiple usersndash Scientistsndash Students amp Educatorsndash Government decision makers
iOPENER
bull NSF Info Integration amp Informatics program bull Information Organization for PENning
Expositions on Research
Components
bull Bibliometric lexical link miningbull Automatic summarization techniquesbull Visualization tools for structure and content
Ongoing Work
bull Increase preprocessing of citation texts to vastly improve trimmer summary comprehension
bull Preliminary case studies with UMD student domain expertsndash Dependency parsing subset of the ACL Anthology
Network (AAN)
Coming Soon
bull Multi-dimensional in-depth long-term case studiesndash longitudinal case studies with domain experts
using their datandash close participant observation
bull Software amp generated surveys publicly available and presented to academia and wider audiences
iOpener Workbench
bull Infrastructure to aid rapid summarization of scientific literature
bull Integratesndash Statisticsndash Visualizationndash Reference managementndash Automatic summarization
iOpener Workbench Tools for Rapid Understanding of Scientific Literature
Cody Dunne Ben Shneiderman Bonnie Dorr amp Judith Klavans cdunne ben bonniecsumdedu jklavansumdedu
tangrasiumicheduclairiopener
This work has been partially supported by NSF grant iOPENER A Flexible Framework to Support Rapid Learning in Unfamiliar Research
Domains jointly awarded to UMD and UMich as IIS 0705832
Network Analysis
Reference Manager
Document amp Citation View
Summarization
Features ndash Network analysis
bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)
bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic
Features ndash Reference Manager
bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008
bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export
Document view - features
bull Citation linksbull Highlighting
Summarization - Features
bull Automatically generated summaries Citation text keywords abstracts
bull Working to substantially improve coherence amp relevance
- iOpener Workbench Tools for Rapid Understanding of Scientific
- iOpener Workbench
- Contribution
- Use Cases
- What we integrate
- What can you do with a graph
- Importance of Survey Articles
- iOPENER
- Components
- Ongoing Work
- Coming Soon
- iOpener Workbench (2)
- iOpener Workbench Tools for Rapid Understanding of Scientific (2)
- Network Analysis
- Reference Manager
- Document amp Citation View
- Summarization
- Features ndash Network analysis
- Features ndash Reference Manager
- Document view - features
- Summarization - Features
-
What we integrate
bull Potent network analysis tool ndash SocialActionndash Citation network statistics amp visualizationndash Automatic community detection amp visualization
bull Reference amp document management ndash JabRefndash Powerful reference manager with extensive features
for search grouping review annotation and export bull Document view with citation linking amp highlightbull Automatically generated summariesndash Citation text keywords abstracts
What can you do with a graph
bull Statistics lists and text is helpful butbull Visualizations show unexpected trends
clusters gaps outliersbull Data cleaning amp verificationbull ldquoInformation visualization answers questions
you didnt know you hadrdquo ndash Ben S
Importance of Survey Articles
bull Rapidly expanding disciplinesbull Large volume of scientific publicationsbull Increasing cross-disciplinary researchbull Need for accurate surveys of previous workndash Short summariesndash In-depth historical notes
bull Multiple usersndash Scientistsndash Students amp Educatorsndash Government decision makers
iOPENER
bull NSF Info Integration amp Informatics program bull Information Organization for PENning
Expositions on Research
Components
bull Bibliometric lexical link miningbull Automatic summarization techniquesbull Visualization tools for structure and content
Ongoing Work
bull Increase preprocessing of citation texts to vastly improve trimmer summary comprehension
bull Preliminary case studies with UMD student domain expertsndash Dependency parsing subset of the ACL Anthology
Network (AAN)
Coming Soon
bull Multi-dimensional in-depth long-term case studiesndash longitudinal case studies with domain experts
using their datandash close participant observation
bull Software amp generated surveys publicly available and presented to academia and wider audiences
iOpener Workbench
bull Infrastructure to aid rapid summarization of scientific literature
bull Integratesndash Statisticsndash Visualizationndash Reference managementndash Automatic summarization
iOpener Workbench Tools for Rapid Understanding of Scientific Literature
Cody Dunne Ben Shneiderman Bonnie Dorr amp Judith Klavans cdunne ben bonniecsumdedu jklavansumdedu
tangrasiumicheduclairiopener
This work has been partially supported by NSF grant iOPENER A Flexible Framework to Support Rapid Learning in Unfamiliar Research
Domains jointly awarded to UMD and UMich as IIS 0705832
Network Analysis
Reference Manager
Document amp Citation View
Summarization
Features ndash Network analysis
bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)
bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic
Features ndash Reference Manager
bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008
bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export
Document view - features
bull Citation linksbull Highlighting
Summarization - Features
bull Automatically generated summaries Citation text keywords abstracts
bull Working to substantially improve coherence amp relevance
- iOpener Workbench Tools for Rapid Understanding of Scientific
- iOpener Workbench
- Contribution
- Use Cases
- What we integrate
- What can you do with a graph
- Importance of Survey Articles
- iOPENER
- Components
- Ongoing Work
- Coming Soon
- iOpener Workbench (2)
- iOpener Workbench Tools for Rapid Understanding of Scientific (2)
- Network Analysis
- Reference Manager
- Document amp Citation View
- Summarization
- Features ndash Network analysis
- Features ndash Reference Manager
- Document view - features
- Summarization - Features
-
What can you do with a graph
bull Statistics lists and text is helpful butbull Visualizations show unexpected trends
clusters gaps outliersbull Data cleaning amp verificationbull ldquoInformation visualization answers questions
you didnt know you hadrdquo ndash Ben S
Importance of Survey Articles
bull Rapidly expanding disciplinesbull Large volume of scientific publicationsbull Increasing cross-disciplinary researchbull Need for accurate surveys of previous workndash Short summariesndash In-depth historical notes
bull Multiple usersndash Scientistsndash Students amp Educatorsndash Government decision makers
iOPENER
bull NSF Info Integration amp Informatics program bull Information Organization for PENning
Expositions on Research
Components
bull Bibliometric lexical link miningbull Automatic summarization techniquesbull Visualization tools for structure and content
Ongoing Work
bull Increase preprocessing of citation texts to vastly improve trimmer summary comprehension
bull Preliminary case studies with UMD student domain expertsndash Dependency parsing subset of the ACL Anthology
Network (AAN)
Coming Soon
bull Multi-dimensional in-depth long-term case studiesndash longitudinal case studies with domain experts
using their datandash close participant observation
bull Software amp generated surveys publicly available and presented to academia and wider audiences
iOpener Workbench
bull Infrastructure to aid rapid summarization of scientific literature
bull Integratesndash Statisticsndash Visualizationndash Reference managementndash Automatic summarization
iOpener Workbench Tools for Rapid Understanding of Scientific Literature
Cody Dunne Ben Shneiderman Bonnie Dorr amp Judith Klavans cdunne ben bonniecsumdedu jklavansumdedu
tangrasiumicheduclairiopener
This work has been partially supported by NSF grant iOPENER A Flexible Framework to Support Rapid Learning in Unfamiliar Research
Domains jointly awarded to UMD and UMich as IIS 0705832
Network Analysis
Reference Manager
Document amp Citation View
Summarization
Features ndash Network analysis
bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)
bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic
Features ndash Reference Manager
bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008
bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export
Document view - features
bull Citation linksbull Highlighting
Summarization - Features
bull Automatically generated summaries Citation text keywords abstracts
bull Working to substantially improve coherence amp relevance
- iOpener Workbench Tools for Rapid Understanding of Scientific
- iOpener Workbench
- Contribution
- Use Cases
- What we integrate
- What can you do with a graph
- Importance of Survey Articles
- iOPENER
- Components
- Ongoing Work
- Coming Soon
- iOpener Workbench (2)
- iOpener Workbench Tools for Rapid Understanding of Scientific (2)
- Network Analysis
- Reference Manager
- Document amp Citation View
- Summarization
- Features ndash Network analysis
- Features ndash Reference Manager
- Document view - features
- Summarization - Features
-
Importance of Survey Articles
bull Rapidly expanding disciplinesbull Large volume of scientific publicationsbull Increasing cross-disciplinary researchbull Need for accurate surveys of previous workndash Short summariesndash In-depth historical notes
bull Multiple usersndash Scientistsndash Students amp Educatorsndash Government decision makers
iOPENER
bull NSF Info Integration amp Informatics program bull Information Organization for PENning
Expositions on Research
Components
bull Bibliometric lexical link miningbull Automatic summarization techniquesbull Visualization tools for structure and content
Ongoing Work
bull Increase preprocessing of citation texts to vastly improve trimmer summary comprehension
bull Preliminary case studies with UMD student domain expertsndash Dependency parsing subset of the ACL Anthology
Network (AAN)
Coming Soon
bull Multi-dimensional in-depth long-term case studiesndash longitudinal case studies with domain experts
using their datandash close participant observation
bull Software amp generated surveys publicly available and presented to academia and wider audiences
iOpener Workbench
bull Infrastructure to aid rapid summarization of scientific literature
bull Integratesndash Statisticsndash Visualizationndash Reference managementndash Automatic summarization
iOpener Workbench Tools for Rapid Understanding of Scientific Literature
Cody Dunne Ben Shneiderman Bonnie Dorr amp Judith Klavans cdunne ben bonniecsumdedu jklavansumdedu
tangrasiumicheduclairiopener
This work has been partially supported by NSF grant iOPENER A Flexible Framework to Support Rapid Learning in Unfamiliar Research
Domains jointly awarded to UMD and UMich as IIS 0705832
Network Analysis
Reference Manager
Document amp Citation View
Summarization
Features ndash Network analysis
bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)
bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic
Features ndash Reference Manager
bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008
bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export
Document view - features
bull Citation linksbull Highlighting
Summarization - Features
bull Automatically generated summaries Citation text keywords abstracts
bull Working to substantially improve coherence amp relevance
- iOpener Workbench Tools for Rapid Understanding of Scientific
- iOpener Workbench
- Contribution
- Use Cases
- What we integrate
- What can you do with a graph
- Importance of Survey Articles
- iOPENER
- Components
- Ongoing Work
- Coming Soon
- iOpener Workbench (2)
- iOpener Workbench Tools for Rapid Understanding of Scientific (2)
- Network Analysis
- Reference Manager
- Document amp Citation View
- Summarization
- Features ndash Network analysis
- Features ndash Reference Manager
- Document view - features
- Summarization - Features
-
iOPENER
bull NSF Info Integration amp Informatics program bull Information Organization for PENning
Expositions on Research
Components
bull Bibliometric lexical link miningbull Automatic summarization techniquesbull Visualization tools for structure and content
Ongoing Work
bull Increase preprocessing of citation texts to vastly improve trimmer summary comprehension
bull Preliminary case studies with UMD student domain expertsndash Dependency parsing subset of the ACL Anthology
Network (AAN)
Coming Soon
bull Multi-dimensional in-depth long-term case studiesndash longitudinal case studies with domain experts
using their datandash close participant observation
bull Software amp generated surveys publicly available and presented to academia and wider audiences
iOpener Workbench
bull Infrastructure to aid rapid summarization of scientific literature
bull Integratesndash Statisticsndash Visualizationndash Reference managementndash Automatic summarization
iOpener Workbench Tools for Rapid Understanding of Scientific Literature
Cody Dunne Ben Shneiderman Bonnie Dorr amp Judith Klavans cdunne ben bonniecsumdedu jklavansumdedu
tangrasiumicheduclairiopener
This work has been partially supported by NSF grant iOPENER A Flexible Framework to Support Rapid Learning in Unfamiliar Research
Domains jointly awarded to UMD and UMich as IIS 0705832
Network Analysis
Reference Manager
Document amp Citation View
Summarization
Features ndash Network analysis
bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)
bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic
Features ndash Reference Manager
bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008
bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export
Document view - features
bull Citation linksbull Highlighting
Summarization - Features
bull Automatically generated summaries Citation text keywords abstracts
bull Working to substantially improve coherence amp relevance
- iOpener Workbench Tools for Rapid Understanding of Scientific
- iOpener Workbench
- Contribution
- Use Cases
- What we integrate
- What can you do with a graph
- Importance of Survey Articles
- iOPENER
- Components
- Ongoing Work
- Coming Soon
- iOpener Workbench (2)
- iOpener Workbench Tools for Rapid Understanding of Scientific (2)
- Network Analysis
- Reference Manager
- Document amp Citation View
- Summarization
- Features ndash Network analysis
- Features ndash Reference Manager
- Document view - features
- Summarization - Features
-
Components
bull Bibliometric lexical link miningbull Automatic summarization techniquesbull Visualization tools for structure and content
Ongoing Work
bull Increase preprocessing of citation texts to vastly improve trimmer summary comprehension
bull Preliminary case studies with UMD student domain expertsndash Dependency parsing subset of the ACL Anthology
Network (AAN)
Coming Soon
bull Multi-dimensional in-depth long-term case studiesndash longitudinal case studies with domain experts
using their datandash close participant observation
bull Software amp generated surveys publicly available and presented to academia and wider audiences
iOpener Workbench
bull Infrastructure to aid rapid summarization of scientific literature
bull Integratesndash Statisticsndash Visualizationndash Reference managementndash Automatic summarization
iOpener Workbench Tools for Rapid Understanding of Scientific Literature
Cody Dunne Ben Shneiderman Bonnie Dorr amp Judith Klavans cdunne ben bonniecsumdedu jklavansumdedu
tangrasiumicheduclairiopener
This work has been partially supported by NSF grant iOPENER A Flexible Framework to Support Rapid Learning in Unfamiliar Research
Domains jointly awarded to UMD and UMich as IIS 0705832
Network Analysis
Reference Manager
Document amp Citation View
Summarization
Features ndash Network analysis
bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)
bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic
Features ndash Reference Manager
bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008
bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export
Document view - features
bull Citation linksbull Highlighting
Summarization - Features
bull Automatically generated summaries Citation text keywords abstracts
bull Working to substantially improve coherence amp relevance
- iOpener Workbench Tools for Rapid Understanding of Scientific
- iOpener Workbench
- Contribution
- Use Cases
- What we integrate
- What can you do with a graph
- Importance of Survey Articles
- iOPENER
- Components
- Ongoing Work
- Coming Soon
- iOpener Workbench (2)
- iOpener Workbench Tools for Rapid Understanding of Scientific (2)
- Network Analysis
- Reference Manager
- Document amp Citation View
- Summarization
- Features ndash Network analysis
- Features ndash Reference Manager
- Document view - features
- Summarization - Features
-
Ongoing Work
bull Increase preprocessing of citation texts to vastly improve trimmer summary comprehension
bull Preliminary case studies with UMD student domain expertsndash Dependency parsing subset of the ACL Anthology
Network (AAN)
Coming Soon
bull Multi-dimensional in-depth long-term case studiesndash longitudinal case studies with domain experts
using their datandash close participant observation
bull Software amp generated surveys publicly available and presented to academia and wider audiences
iOpener Workbench
bull Infrastructure to aid rapid summarization of scientific literature
bull Integratesndash Statisticsndash Visualizationndash Reference managementndash Automatic summarization
iOpener Workbench Tools for Rapid Understanding of Scientific Literature
Cody Dunne Ben Shneiderman Bonnie Dorr amp Judith Klavans cdunne ben bonniecsumdedu jklavansumdedu
tangrasiumicheduclairiopener
This work has been partially supported by NSF grant iOPENER A Flexible Framework to Support Rapid Learning in Unfamiliar Research
Domains jointly awarded to UMD and UMich as IIS 0705832
Network Analysis
Reference Manager
Document amp Citation View
Summarization
Features ndash Network analysis
bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)
bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic
Features ndash Reference Manager
bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008
bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export
Document view - features
bull Citation linksbull Highlighting
Summarization - Features
bull Automatically generated summaries Citation text keywords abstracts
bull Working to substantially improve coherence amp relevance
- iOpener Workbench Tools for Rapid Understanding of Scientific
- iOpener Workbench
- Contribution
- Use Cases
- What we integrate
- What can you do with a graph
- Importance of Survey Articles
- iOPENER
- Components
- Ongoing Work
- Coming Soon
- iOpener Workbench (2)
- iOpener Workbench Tools for Rapid Understanding of Scientific (2)
- Network Analysis
- Reference Manager
- Document amp Citation View
- Summarization
- Features ndash Network analysis
- Features ndash Reference Manager
- Document view - features
- Summarization - Features
-
Coming Soon
bull Multi-dimensional in-depth long-term case studiesndash longitudinal case studies with domain experts
using their datandash close participant observation
bull Software amp generated surveys publicly available and presented to academia and wider audiences
iOpener Workbench
bull Infrastructure to aid rapid summarization of scientific literature
bull Integratesndash Statisticsndash Visualizationndash Reference managementndash Automatic summarization
iOpener Workbench Tools for Rapid Understanding of Scientific Literature
Cody Dunne Ben Shneiderman Bonnie Dorr amp Judith Klavans cdunne ben bonniecsumdedu jklavansumdedu
tangrasiumicheduclairiopener
This work has been partially supported by NSF grant iOPENER A Flexible Framework to Support Rapid Learning in Unfamiliar Research
Domains jointly awarded to UMD and UMich as IIS 0705832
Network Analysis
Reference Manager
Document amp Citation View
Summarization
Features ndash Network analysis
bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)
bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic
Features ndash Reference Manager
bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008
bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export
Document view - features
bull Citation linksbull Highlighting
Summarization - Features
bull Automatically generated summaries Citation text keywords abstracts
bull Working to substantially improve coherence amp relevance
- iOpener Workbench Tools for Rapid Understanding of Scientific
- iOpener Workbench
- Contribution
- Use Cases
- What we integrate
- What can you do with a graph
- Importance of Survey Articles
- iOPENER
- Components
- Ongoing Work
- Coming Soon
- iOpener Workbench (2)
- iOpener Workbench Tools for Rapid Understanding of Scientific (2)
- Network Analysis
- Reference Manager
- Document amp Citation View
- Summarization
- Features ndash Network analysis
- Features ndash Reference Manager
- Document view - features
- Summarization - Features
-
iOpener Workbench
bull Infrastructure to aid rapid summarization of scientific literature
bull Integratesndash Statisticsndash Visualizationndash Reference managementndash Automatic summarization
iOpener Workbench Tools for Rapid Understanding of Scientific Literature
Cody Dunne Ben Shneiderman Bonnie Dorr amp Judith Klavans cdunne ben bonniecsumdedu jklavansumdedu
tangrasiumicheduclairiopener
This work has been partially supported by NSF grant iOPENER A Flexible Framework to Support Rapid Learning in Unfamiliar Research
Domains jointly awarded to UMD and UMich as IIS 0705832
Network Analysis
Reference Manager
Document amp Citation View
Summarization
Features ndash Network analysis
bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)
bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic
Features ndash Reference Manager
bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008
bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export
Document view - features
bull Citation linksbull Highlighting
Summarization - Features
bull Automatically generated summaries Citation text keywords abstracts
bull Working to substantially improve coherence amp relevance
- iOpener Workbench Tools for Rapid Understanding of Scientific
- iOpener Workbench
- Contribution
- Use Cases
- What we integrate
- What can you do with a graph
- Importance of Survey Articles
- iOPENER
- Components
- Ongoing Work
- Coming Soon
- iOpener Workbench (2)
- iOpener Workbench Tools for Rapid Understanding of Scientific (2)
- Network Analysis
- Reference Manager
- Document amp Citation View
- Summarization
- Features ndash Network analysis
- Features ndash Reference Manager
- Document view - features
- Summarization - Features
-
iOpener Workbench Tools for Rapid Understanding of Scientific Literature
Cody Dunne Ben Shneiderman Bonnie Dorr amp Judith Klavans cdunne ben bonniecsumdedu jklavansumdedu
tangrasiumicheduclairiopener
This work has been partially supported by NSF grant iOPENER A Flexible Framework to Support Rapid Learning in Unfamiliar Research
Domains jointly awarded to UMD and UMich as IIS 0705832
Network Analysis
Reference Manager
Document amp Citation View
Summarization
Features ndash Network analysis
bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)
bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic
Features ndash Reference Manager
bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008
bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export
Document view - features
bull Citation linksbull Highlighting
Summarization - Features
bull Automatically generated summaries Citation text keywords abstracts
bull Working to substantially improve coherence amp relevance
- iOpener Workbench Tools for Rapid Understanding of Scientific
- iOpener Workbench
- Contribution
- Use Cases
- What we integrate
- What can you do with a graph
- Importance of Survey Articles
- iOPENER
- Components
- Ongoing Work
- Coming Soon
- iOpener Workbench (2)
- iOpener Workbench Tools for Rapid Understanding of Scientific (2)
- Network Analysis
- Reference Manager
- Document amp Citation View
- Summarization
- Features ndash Network analysis
- Features ndash Reference Manager
- Document view - features
- Summarization - Features
-
Network Analysis
Reference Manager
Document amp Citation View
Summarization
Features ndash Network analysis
bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)
bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic
Features ndash Reference Manager
bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008
bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export
Document view - features
bull Citation linksbull Highlighting
Summarization - Features
bull Automatically generated summaries Citation text keywords abstracts
bull Working to substantially improve coherence amp relevance
- iOpener Workbench Tools for Rapid Understanding of Scientific
- iOpener Workbench
- Contribution
- Use Cases
- What we integrate
- What can you do with a graph
- Importance of Survey Articles
- iOPENER
- Components
- Ongoing Work
- Coming Soon
- iOpener Workbench (2)
- iOpener Workbench Tools for Rapid Understanding of Scientific (2)
- Network Analysis
- Reference Manager
- Document amp Citation View
- Summarization
- Features ndash Network analysis
- Features ndash Reference Manager
- Document view - features
- Summarization - Features
-
Reference Manager
Document amp Citation View
Summarization
Features ndash Network analysis
bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)
bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic
Features ndash Reference Manager
bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008
bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export
Document view - features
bull Citation linksbull Highlighting
Summarization - Features
bull Automatically generated summaries Citation text keywords abstracts
bull Working to substantially improve coherence amp relevance
- iOpener Workbench Tools for Rapid Understanding of Scientific
- iOpener Workbench
- Contribution
- Use Cases
- What we integrate
- What can you do with a graph
- Importance of Survey Articles
- iOPENER
- Components
- Ongoing Work
- Coming Soon
- iOpener Workbench (2)
- iOpener Workbench Tools for Rapid Understanding of Scientific (2)
- Network Analysis
- Reference Manager
- Document amp Citation View
- Summarization
- Features ndash Network analysis
- Features ndash Reference Manager
- Document view - features
- Summarization - Features
-
Document amp Citation View
Summarization
Features ndash Network analysis
bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)
bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic
Features ndash Reference Manager
bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008
bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export
Document view - features
bull Citation linksbull Highlighting
Summarization - Features
bull Automatically generated summaries Citation text keywords abstracts
bull Working to substantially improve coherence amp relevance
- iOpener Workbench Tools for Rapid Understanding of Scientific
- iOpener Workbench
- Contribution
- Use Cases
- What we integrate
- What can you do with a graph
- Importance of Survey Articles
- iOPENER
- Components
- Ongoing Work
- Coming Soon
- iOpener Workbench (2)
- iOpener Workbench Tools for Rapid Understanding of Scientific (2)
- Network Analysis
- Reference Manager
- Document amp Citation View
- Summarization
- Features ndash Network analysis
- Features ndash Reference Manager
- Document view - features
- Summarization - Features
-
Summarization
Features ndash Network analysis
bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)
bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic
Features ndash Reference Manager
bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008
bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export
Document view - features
bull Citation linksbull Highlighting
Summarization - Features
bull Automatically generated summaries Citation text keywords abstracts
bull Working to substantially improve coherence amp relevance
- iOpener Workbench Tools for Rapid Understanding of Scientific
- iOpener Workbench
- Contribution
- Use Cases
- What we integrate
- What can you do with a graph
- Importance of Survey Articles
- iOPENER
- Components
- Ongoing Work
- Coming Soon
- iOpener Workbench (2)
- iOpener Workbench Tools for Rapid Understanding of Scientific (2)
- Network Analysis
- Reference Manager
- Document amp Citation View
- Summarization
- Features ndash Network analysis
- Features ndash Reference Manager
- Document view - features
- Summarization - Features
-
Features ndash Network analysis
bull SocialAction (Perer Shneiderman)bull Citation network visualization ndash Force-directed placement (by linkages)
bull Scatterplots of paper attributes amp statisticsbull Statistics rank tablesbull Categorial and numerical range coloringbull Automatic community detection ndash Newman 04 fast heuristic
Features ndash Reference Manager
bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008
bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export
Document view - features
bull Citation linksbull Highlighting
Summarization - Features
bull Automatically generated summaries Citation text keywords abstracts
bull Working to substantially improve coherence amp relevance
- iOpener Workbench Tools for Rapid Understanding of Scientific
- iOpener Workbench
- Contribution
- Use Cases
- What we integrate
- What can you do with a graph
- Importance of Survey Articles
- iOPENER
- Components
- Ongoing Work
- Coming Soon
- iOpener Workbench (2)
- iOpener Workbench Tools for Rapid Understanding of Scientific (2)
- Network Analysis
- Reference Manager
- Document amp Citation View
- Summarization
- Features ndash Network analysis
- Features ndash Reference Manager
- Document view - features
- Summarization - Features
-
Features ndash Reference Manager
bull Search by field with simple regexndash abstract|keywords=nonprojective and year = 2008
bull Grouping -- automatic search results manualbull DOIURL fulltext (annotated PDF plain text)bull Metadata abstractsbull User generated reviewsbull BibTeX Word OpenOffice integrationbull HTML EndNote export
Document view - features
bull Citation linksbull Highlighting
Summarization - Features
bull Automatically generated summaries Citation text keywords abstracts
bull Working to substantially improve coherence amp relevance
- iOpener Workbench Tools for Rapid Understanding of Scientific
- iOpener Workbench
- Contribution
- Use Cases
- What we integrate
- What can you do with a graph
- Importance of Survey Articles
- iOPENER
- Components
- Ongoing Work
- Coming Soon
- iOpener Workbench (2)
- iOpener Workbench Tools for Rapid Understanding of Scientific (2)
- Network Analysis
- Reference Manager
- Document amp Citation View
- Summarization
- Features ndash Network analysis
- Features ndash Reference Manager
- Document view - features
- Summarization - Features
-
Document view - features
bull Citation linksbull Highlighting
Summarization - Features
bull Automatically generated summaries Citation text keywords abstracts
bull Working to substantially improve coherence amp relevance
- iOpener Workbench Tools for Rapid Understanding of Scientific
- iOpener Workbench
- Contribution
- Use Cases
- What we integrate
- What can you do with a graph
- Importance of Survey Articles
- iOPENER
- Components
- Ongoing Work
- Coming Soon
- iOpener Workbench (2)
- iOpener Workbench Tools for Rapid Understanding of Scientific (2)
- Network Analysis
- Reference Manager
- Document amp Citation View
- Summarization
- Features ndash Network analysis
- Features ndash Reference Manager
- Document view - features
- Summarization - Features
-
Summarization - Features
bull Automatically generated summaries Citation text keywords abstracts
bull Working to substantially improve coherence amp relevance
- iOpener Workbench Tools for Rapid Understanding of Scientific
- iOpener Workbench
- Contribution
- Use Cases
- What we integrate
- What can you do with a graph
- Importance of Survey Articles
- iOPENER
- Components
- Ongoing Work
- Coming Soon
- iOpener Workbench (2)
- iOpener Workbench Tools for Rapid Understanding of Scientific (2)
- Network Analysis
- Reference Manager
- Document amp Citation View
- Summarization
- Features ndash Network analysis
- Features ndash Reference Manager
- Document view - features
- Summarization - Features
-