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Page 1: IR SPECTROSCOPY - files.alfresco.mjh.groupfiles.alfresco.mjh.group/.../Spectroscopy_Aug2019supp.pdf · 14/08/2019  · IR spectroscopy provides a rapid nonde-structive means to perform

®®

IR SPECTROSCOPYFOR TODAY’S

SPECTROSCOPISTS

August 2019 Volume 34 Number s8 www.spectroscopyonline.com

Page 2: IR SPECTROSCOPY - files.alfresco.mjh.groupfiles.alfresco.mjh.group/.../Spectroscopy_Aug2019supp.pdf · 14/08/2019  · IR spectroscopy provides a rapid nonde-structive means to perform

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Page 4: IR SPECTROSCOPY - files.alfresco.mjh.groupfiles.alfresco.mjh.group/.../Spectroscopy_Aug2019supp.pdf · 14/08/2019  · IR spectroscopy provides a rapid nonde-structive means to perform

®®®®

4 IR Technology for Today’s Spectroscopists August 2019

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®

®®

IR SPECTROSCOPYFOR TODAY’S

SPECTROSCOPISTS

August 2019 Volume 34 Number s8 www.spectroscopyonline.com

6 IR Technology for Today’s Spectroscopists August 2019

Articles

8 Mid-IR Spectroscopy as a Primary Tool in Carbon Biogeochemistry ResearchAdrian Spence

Mid-infrared spectroscopy is applied as a primary technique to better understand the bio- and ultraviolet-transformation of soil microbial biomass. Soil microbial biomass constitutes as much as 50% organic carbon in soil organic matter, and therefore plays a crucial role in soil-atmospheric chemistry. In this study, the spatial distribution of microbial-derived organic structures on kaolinite and montmorillonite clay minerals was investigated.

18 The Application of FT-NIR and Multivariate Analysis Methods for Characterization of an Industrial Mold Purging ProcessKillian Barton, Michael McAuliffe, and Liam Lewis

Near infrared (NIR) reflection spectroscopy and multivariate analysis have been used to characterize materials relating to an injection mold barrel purging process. NIR was compared to attenuated total reflectance-mid-infrared (ATR-MIR) spectral measurements to assess whether the NIR measurement was relevant to either the surface or the bulk of the samples.

26 Native Measurement of a Biotherapeutic without Interference from Excipients Using Microfluidic Modulation SpectroscopyLibo Wang, Ioannis A. Papayannopoulos, Shannon Renn-Bingham, and Jeffrey Zonderman

A new infrared spectroscopy technique, microfluidic modulation spectroscopy (MMS), delivers reproducible protein characterization over close to four orders of magnitude in protein concentration (from 0.1 to 200 mg/mL). This technique characterizes samples from the earliest stages of development through to manufacture.

Cover image courtesy of sergeyklopotov/Adobe Stock; ursule/Adobe Stock; amenic181/Adobe Stock.

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Page 8: IR SPECTROSCOPY - files.alfresco.mjh.groupfiles.alfresco.mjh.group/.../Spectroscopy_Aug2019supp.pdf · 14/08/2019  · IR spectroscopy provides a rapid nonde-structive means to perform

8 IR Technology for Today’s Spectroscopists August 2019

Mid-IR Spectroscopy as a Primary Tool in Carbon Biogeochemistry Research

Previous studies have shown that soil microbial biomass constitutes as much as 50% organic carbon in soil organic matter, and therefore plays a crucial role in soil-atmospheric chemistry and climate. However, little is known about the fate and transformation of the magnitude of microbial components in the soil. In this study, mid-infrared (IR) spectroscopy is applied as a primary technique to better understand the bio- and ultraviolet-transformation of soil microbial biomass. The spatial distribution of microbial-derived organic structures on kaolinite and montmorillonite clay minerals was investigated to decipher which organic structures preferentially associate with the crystalline and amorphous forms of the minerals, which may be accessible to microbial heterotrophs, and which are physically protected from decomposition.

Adrian Spence

Soil organic matter (SOM) is a com-plex mixture of compounds with varied sources, compositions, and

environmental and ecological roles. Gen-erally, the biogeochemical characteristics of SOM represent an integrated signal of multiple processes, including degradation and its interaction with soil minerals and pedogenic oxides. Recently, the microbial contribution to SOM has been shown to be much larger than previously thought, and therefore its role in the carbon and nitrogen biogeochemical cycles may also be underestimated (1,2). Considering the huge amounts of carbon stored in soils, and the unprecedented pressure on land due to rapid population growth, climate change, land degradation, and other en-vironmental stressors, there is an urgent

need to better understand the degradation dynamics of SOM, as well as its interac-tions with pristine and structurally altered (weathered) clay minerals.

In soils, biological recalcitrance of organic matter (OM) can be attained through molecular structure and forma-tion of cross linkages, but organic mat-ter–mineral interactions have also been shown to play a crucial role in the preser-vation and distribution of SOM. Overall, organic matter–mineral interactions have significant implications for a number of biogeochemical processes, ranging from the formation, growth, and division of the earliest cells, to agricultural produc-tivity and other ecosystem services, such as enhancing the ability of soils to act as a natural modulator of global climate change

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10 IR Technology for Today’s Spectroscopists August 2019

(3,4). Despite these important roles and functions, molecular-level information about the mechanisms of such interactions remains poorly understood, and even less is known about the effects of micro-scale weathering of minerals on these interac-tions. Therefore, these gaps in our knowl-edge may serve to undermine our ability to predict future carbon cycling under a warming climate, and to reconstruct paleo-environmental conditions based on organic matter-derived proxies.

In this contribution, mid-infrared (IR) spectroscopy is applied as a primary tech-nique to better understand the bio- and ultraviolet-transformation of soil microbial biomass. Further, the spatial distribution of microbial-derived organic structures on kaolinite (1:1) and montmorillonite (2:1) clay minerals is investigated, in order to decipher which organic structures preferentially associate with the crystal-line and amorphous (weathered) forms of the minerals, which may be accessible to microbial heterotrophs, and which are physically protected from decomposition. IR spectroscopy provides a rapid nonde-structive means to perform molecular-level investigations on SOM and their interactions with soil minerals and pedo-genic oxides. Critically, since samples are not subjected to chemical treatment, there are no side effects of secondary reactions. Additionally, the molecular composition of the sample is determined simultane-ously, which simplifies and shortens the time required for spectral processing, in-cluding the quantitative determination of major macromolecular components (5).

Materials and MethodsMicrobial Propagations and Conditions A mixed heterotrophic soil biome was prepared in trypicase soy broth (TSB), supplemented with 0.5% (w/v) yeast extract.

Initially, 1 g of freshly collected, homoge-nized agricultural soil was added to 100 mL aliquots of sterile distilled water, and dis-persed by stirring. Aliquots (1 mL) of the initial soil suspension were used to prepare serial dilutions of 10-4 g soil suspension in a mixture of TSB–yeast extract and sterile distilled water (1:9). Finally, 1-mL aliquots from the serial dilutions were used to in-oculate 100 mL of the undiluted growth solution, and the cultures incubated at room temperature for 72 h, with shaking at 150 rpm. Dilutions were done to prevent any possible carryover of soil particles from the initial soil suspension. After incubation, the cultures were harvested by centrifuga-tion, and the cell pellets washed in ultra-pure water and freeze-dried (6,7).

Microbial Degradation Bio- and ultraviolet degradation of soil microbial biomass and biodegradation of kaolinite-microbial complex were con-ducted as described by Spence and Kelle-her (8). Biodegradation was carried out under ambient conditions for 26 weeks.

Microscale Weathering of Clay Material Microscale weathering of untreated (raw) montmorillonite (SWy-2; Source Clays Re-pository; The Clay Minerals Society) was carried out for 36 h, according to the pro-tocol described by Spence and associates (9).

Adsorption ExperimentDuplicate clay-microbial adsorption exper-iments were carried using raw kaolinite, as well as raw and acid-treated (weathered/de-graded) montmorillonite clay minerals (9).

IR AnalysisThe IR spectra of initial and degraded (bio- and ultraviolet) biomass, raw ka-olinite, raw and acid-treated montmoril-

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August 2019 IR Technology for Today’s Spectroscopists 11

lonite, and their related microbial com-plexes were acquired on a Bruker Tensor Series FT-IR spectrometer, using the KBr pressed disk technique. Thoroughly dried samples (~1 mg) were homoge-nized in 100 mg of spectroscopic-grade KBr (Sigma). Background KBr spectra were obtained and spectra ratioed to the background. Spectra were recorded by accumulating 256 scans in the 4000 to 400 cm-1 mid-IR spectral range in the absorbance mode, with a resolution of 4 cm–1. To minimize complications aris-ing from unavoidable spectral shifts, baseline correction was applied to all spectra using the automatic baseline correction method. In addition to the use of thoroughly dried samples, it was essential to analyze the disk-like pellets

immediately after preparation. This was done to minimize the adsorption of at-mospheric water by the hygroscopic KBr, hence reducing the possibility of chemi-cal exchange between the clay and KBr, which could result in a change of the crystalline structure of the mineral (10). Further, rapid analysis of the pellets was important to eliminate the suppression of key signals from the samples by KBr-adsorbed water.

Results and DiscussionFigure 1 presents the IR spectra of fresh microbial biomass (a), and that degraded under ambient (b) and ultraviolet (c) con-ditions. General peak assignments are ap-plicable to all spectra, and the character-istic functionalities of major biochemical

(a) 4000–2400 cm-1 region

Wavenumber (cm-1) Wavenumber (cm-1)

(b) 2000–400 cm-1 region

4000

3308

1656

1745

1546

1401

1242

1085

Ab

sorb

an

ce

2929

28563261

3600 3200 2800 2400 2000 1600 1200 800 400

a a

b b

c c

Figure 1: Stacked infrared spectra of (a) fresh microbial biomass; (b) microbial biomass degraded under ambient light for 26 weeks; and (c) microbial biomass degraded under ultraviolet light for 26 weeks. The spectra are presented to highlight the 4000–2400 cm-1 and the 2000–400 cm-1 spectral regions. The spectra in each box are offset and shown with similar scaling so that clear comparisons can be made.

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12 IR Technology for Today’s Spectroscopists August 2019

components are summarized in Table I. After degradation has occurred, major structural changes are observed, particu-larly the enrichment of polymethylenic-C [(CH2)n] in long-chained aliphatic struc-tures (CHx stretching bands at 3000 cm–1 to 2700 cm-1), indicating that they are selectively preserved as part of the stable carbon pool. Signals from other biochem-ical components (proteins and carbohy-drates; see Table I) are attenuated, indi-cating that they have degraded relative to aliphatics. Overall, there is no distinction between bio- and photodegradation prod-ucts. Bio- and photodegradation are pri-mary decomposition processes involved in organic matter transformation in the terrestrial environment (8).

The superimposed spectra of raw and acid-treated montmorillonite are pre-

sented in Figure 2. A band at 3626 cm-1

denotes v(OH) of structural OH groups coordinated to octahedral cations (Al–O[OH]); Al-Al-OH bending (917 cm–1), Al-Fe-OH (881 cm–1), and Al-Mg-OH (844 cm–1), suggesting that octahedral Al3+ is partially substituted by Fe2+ or Mg2+ ions (11). Two shoulders near 881 cm–1 and 844 cm–1 suggest a relatively low concentrations of Fe2+ and Mg2+ ions, respectively. After acid-treatment, the v(OH) band (3626 cm-1), the –OH bending vibrations near 917, 881, and 844 cm–1, and δ(Si–O–Al) at 526 cm–1 (12) are no longer observed, demonstrat-ing a depletion in the content of Al3+ and substituted Mg2+ and Fe2+ cations in the octahedral sheet. This is supported by the attenuation of spectral hydration peaks in the –OH stretching (3419 cm–1)

(a) 4000–2400 cm-1 region (b) 2000–400 cm-1 region

Ab

sorb

an

ce

3626

1623

1047

3419

3225 a a

b b

3900

Wavenumber (cm-1) Wavenumber (cm-1)

3500 3100 2700 1600 1200 800 400

7909

17

624

526

4631

095

Figure 2: Infrared spectra of (a) raw montmorillonite, and (b) montmorillonite samples treated with 6 mol/L of HCl for 36 h. The spectra are presented to highlight the 4000–2400 cm-1 and the 2000–400 cm-1 spectral regions.

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August 2019 IR Technology for Today’s Spectroscopists 13

and v2(H2O) bending regions 1650–1623 cm–1, and an incremental shift in the po-sition of the v2(H2O) peak from 1623 to 1620 cm–1. A shoulder near 3225 cm–1, indicating an overtone (2v2) of bend-ing mode of cation hydration water in the raw mineral, is not observed in the acid-treated clay. Microscale weather-ing of the tetrahedral (Si environment) is also observed, and is characterized by changes in both the shape and position of the Si–O stretching band (1047 cm–1), now appearing at 1095 cm–1, and the enrichment of the asymmetric band 790 cm–1. This would suggest that acid hy-drolysis (a key process in soil formation) has transformed the crystalline structure of montmorillonite to amorphous silica. All remaining bands (1095, 790, and 463

cm–1 [12]) in the acid-treated spectrum are synonymous with Si–O vibrations.

Figure 3 illustrates the interactions of microbial biomass with raw and weathered montmorillonite. Microbial interactions with raw montmorillonite is dominated by signals from aliphatic and proteinaceous components (Figure 3a; see Table I for full assignment of spec-tral peaks). The results also clearly dem-onstrate that only limited quantities of microbial-derived components (primar-ily proteins [1640 cm–1]) are adsorbed to the weathered structure. This would sug-gest that octahedral and interlayer cations present in a crystalline structure play im-portant roles in the adsorption process.

The IR spectra of raw kaolinite (a), ka-olinite–microbial complex (b), and the lat-

(a) 4000–2400 cm-1 region (b) 2000–400 cm-1 region

(A) (B)

36263430

2929

2852

3900 3500 3100 2700 1600 1200 800 400

a a

b b

Wavenumber (cm-1) Wavenumber (cm-1)

16401535

1398

10

99

88

1

79

0

62

4

46

75

26

91

4

1050

Ab

sorb

an

ce

Figure 3: Inset spectra: superimposed infrared spectra of the interactions of a mixed heterotrophic soil biome with (a) raw montmorillonite, and (b) sample treated with 6 mol/L HCl for 36 h. The spectra are presented to highlight the 4000–2400 cm-1 and the 2000–400 cm-1 spectral regions.

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14 IR Technology for Today’s Spectroscopists August 2019

ter sample degraded under ambient con-ditions for 26 weeks (c) are presented in Figure 4. Raw kaolinite exhibits four char-acteristic peaks assigned to v(OH) stretch-ing vibrations of surface OH groups (3652, 3671, and 3694 cm-1), and v(OH) vibra-tions of inner OH groups (3620 cm-1). The v(Si–O) is represented by three strong, well-resolved bands in the 1100–1000 cm-1 region. Bands at 936 and 913 cm-1 repre-sent OH-bending vibrations of the outer and inner surface OH groups of the min-eral, respectively. Additional bands near 701 and 755 cm-1 are associated with the surface OH groups. Bands due to δ(Al-Fe-OH) at 865–875 cm-1 and stretching at 3607 cm-1 are typical of Fe-bearing ka-

olinites, while the absorption bands due to Si–O–Al and Si–O–Si are observed at 544 and 473 cm-1, respectively (13). After interactions have occurred, the v(OH), δ(OH), v(SiO), and the δ(SiO) bands are now attenuated (Figure 4b and c). Further, the v(OH) band at 3671 cm-1 is no longer observed, suggesting that hydrogen bond-ing with microbial-derived components has occurred.

Conversely, the bands at 3621, 3652, and 3694 cm-1 remained unchanged, in-dicating there was no intercalation of the mineral. Signals form v(OH) in phenolic and carboxylic groups and v(N-H) of amides from major biochemical groups appear as a strong broad at 3408–3300

Wavenumber (cm-1)

4000 3600 3200 2800 400

1035

1011

544

473

431913

701

797

936

756

1545

1394

1099

1116

1657

17462856

2929

2960

3433

3671

3652

3620

3694

a

b

c

8001200160020002400

Figure 4: FT-IR absorbance spectra of (a) pure kaolinite, (b) initial kaolinite-microbial complex, and (c) the latter sample degraded under ambient conditions (4000–400 cm-1 spectral region).

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August 2019 IR Technology for Today’s Spectroscopists 15

cm-1. Microbial–mineral interactions are further evidenced by peaks at 2929 and 2856 cm-1 assigned to vas(CH2) and v(CH2) from CH2 methylene groups, re-spectively. When coupled with a weak shoulder at 2960 cm-1 (vas[C–H] of methyl groups), this would suggest a contribution from polymethylenic-C ([C-H2]n]) with a low degree of branching in the interaction process (14). Contributions from other biochemical components with roles in the interaction process, including bands at 1657 cm-1 attributed to aromatic v(C=C) bonds, v(O–C=O) of metal-coordinate carboxylates, H-bonded v(C=O) of am-ides, and amide I band in peptides and proteins. Absorption peaks of moderate to low intensity at 1545, 1425, 1394–1380, and 1235 cm-1 denotes δ(N–H) of amide II of proteins; δ(O-H) of carboxylic acids,

the CO2 stretch of carboxylates and the al-iphatic CH2 group of alkanes; δ(CH2) and δ(CH3), phenolic v(C-O) or vsym(OCO) of coordinated carboxylate groups; and v(C-O) of carboxylic acid and the v(C-N) of amides (amide III), respectively (14). A weak shoulder at 1099–1095 cm-1 corre-sponds to the C–O–O and C–O ring vi-bration of carbohydrates, most likely from bacterial cell wall components such as peptidoglycan. Note, these figures remain largely unchanged following degradation of the clay-microbial complex, suggesting that microbial-derived biomolecules are physically protected.

ConclusionsIn this study, mid-infrared (IR) spectros-copy is applied as a primary technique to better understand the bio- and ultraviolet-

Table I: Positions and assignments of adsorption bands observed in the mid-iR spectrum of soil microbial biomass (in cm–1).

Observed Wavenumber (cm–1) Band Assignment

3308ν (OH)of hydroxyl groups

ν (N—H) of amide A in proteins

3261ν (N—H) of amide B

νas(O—H) of H-bonded phenolic groups

2961 νas(C—H) of CH3 in aliphatic structures

2929 νas(C—H) of CH2 in aliphatic structures

2852 ν(C—H) of CH2 in aliphatic structures

1650–1640 ν(C=C) in aromatics, ν(C=O) in amide I

1546 δ(CH2), δ(CH3), ν(C—O), δ(N—H) in plane

1460 δ(C—H) of CH2 and C(CH3)2 in aliphatic structures

1401δ(C—H) of CH2 and CH3 in aliphatic structures

ν(C=O) of COO

1242ν(C—O) of COO

ν(C—N) of amide III

1085

ν(C—C), ν(C—O), ν(C—O—C) predominantly

from ring vibrations of carbohydrates

ν(P—O) of nucleic acids

990–500 δ(=C—H) or aromatic

ν = symmetric stretching; νas

= asymmetric stretching; δ = bending.

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16 IR Technology for Today’s Spectroscopists August 2019

transformation of soil microbial biomass. The spatial distribution of microbial-derived organic structures on kaolinite and montmorillonite clay minerals was investigated to decipher which organic structures preferentially associate with the crystalline and amorphous forms of the minerals, which may be accessible to microbial heterotrophs, and which are physically protected from decomposition.

Bio- and photodegradation produced indistinguishable results, and are both characterized by considerable enrich-ment in aliphatic components, presum-ably polymethylenic-C ([C-H2]n), and a concomitant decrease in the relative con-centrations of carbohydrate and protein structures in a clay-free environment. Re-sults also indicate that microbial-derived organic matter (OM), primarily aliphatic components, adsorbed mainly to the ex-ternal surfaces of the minerals, but also to the interlaminar region of montmorillon-ite. Similarly, aliphatic structures appear to be dominant after degradation of OM-mineral complexes had occurred. After chemical weathering of montmorillon-ite, the adsorption of microbial-derived components (in particular lipids) to the amorphous form of the mineral appears to have decreased. Based on this behavior, an immediate conclusion is that spatial co-variation of microbial-derive OM with octahedral cations in the minerals may be a primary mechanism of interaction.

References(1) R. Kindler, A. Miltner, H-H. Richnow, and

M. Kastner, Soil Biol. Biochem. 38, 2860–

2870 (2006).

(2) A.J. Simpson, M.J. Simpson, E. Smith, and

B.P. Kelleher, Environ. Sci. Technol. 41,

8070–8076 (2007).

(3) M.S. Huang, Soil Mineral-Organic

Matter-Microorganism Interactions and

Ecosystem Health: Dynamic, Mobility and

Transformation of Pollutants and Nutrients,

A. Violante, J-M. Bollag, L. Gianfreda, and P.M.

Huang, Eds. (Elsevier Science, Amsterdam,

The Netherlands, 2002), pp. 1–36.

(4) P.M. Torn, Biophysico-Chemical Processes

Involving Natural Nonliving Organic Matter

in Environmental Systems, N. Senesi, B. Xing,

and P.M. Huang, Eds. (John Wiley & Sons,

Hoboken, New Jersey, 2009), pp. 219‒272.

(5) M. Grube, J. Zagreba, E. Gromozova, and

M. Fomina, Vib. Spectrosc. 19, 301–306

(1999).

(6) D. Borrok, J.B. Fein, and C.F. Kulpa,

Cosmochim. Acta 68, 3231–3238 (2004).

(7) I.V.N Rathnayake, M. Megharaj, G.S.R.

Krishnamurti, N. Bolan, and R. Naidu,

Chemosphere 90, 1195–1200 (2013).

(8) A. Spence and B.P. Kelleher, J. Mol. Struct.

1107, 7–13 (2016).

(9) A. Spence, C. Robinson, and R.E. Hanson,

Mol. Struct. 1056–1057, 157–165 (2014).

(10) N. van Breemen and P. Buurman, Soil

Formation (Kluwer Academic Publishers,

Dordrecht, The Netherlands, 2000).

(11) J. Madejová and P. Komadel, Clays Clay

Miner. 49, 410–432 (2001).

(12) M. Pentrák, V. Bizovská, and J. Madejová,

Vib. Spectrosc. 63, 360–366 (2012).

(13) K. Tazaki, Clays Clay Miner. 53, 224–233

(2005).

(14) C.P. Marshall, E.A. Carter, S. Leuko, and E.

Javaux, Vib. Spectrosc. 41, 182–189 (2006).

Adrian Spence is with the International

Centre for Environmental and Nuclear

Sciences, at the University of the West Indies,

in Mona, Kingston, Jamaica. Direct correspon-

dence to: [email protected]

For more information on this topic, please visit our homepage at: www.spectroscopyonline.com

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ADVERTISEMENT Molecular Spectroscopy 17

TGA-FTIR as a Tool for Investigating Plastic FailuresFrank Wasacz, Thermo Fisher Scientifi c

Investigating the failure of plastic materials often requires using a variety of analytical tools to identify the mechanism and the cause of the failure. Of the many tools available, FTIR is often one of the first tools employed for root cause analysis. FTIR can offer valuable insights into many of the causes of failure from incorrect materials used in the formulation to the identification of chemical agents in contact with the failed part.

A broken cell phone case after microscopic investi-gation showed surface fractures consistent with

environmental stress cracking due to tensile stress and exposure to an incompatible chemical agent.

Experimental ConditionsSpectra were collected in the area of the fracture utilizing the built-in diamond ATR module of a Thermo Scientific Nicolet™ iS50 FTIR spectrometer. A small amount material from the failed area was analyzed by TGA-FTIR from 25 °C to 500 °C utilizing the Nicolet iS50 TGA module.

ResultsThe analysis of the ATR spectrum confirmed the correct material composition but also showed a spectral feature

not attributed to the plastic. A spectrum extracted from the weight loss event at 400 °C was analyzed using OMNIC™ Specta Multi-Component Search. Two of the components were expected breakdown components of the polymer while the third was a methyl ester. The most likely scenario that caused the failure was that the case was often in contact with hand cream and some of the excess ester in that cream penetrated into the polymer matrix, resulting in the pre-disposition for cracking.

ConclusionsThe combination of ATR and TGA-IR is a powerful tool in the identification of the mechanism and cause of failures in plastic components.

Thermo Fisher Scientifi c5225 Verona Road, Madison, WI 53711

Website: Thermofi sher.com/polymer

Figure 1: Spectrum A extracted from TGA-IR data set collected from material in the area of crack. Spectra B, C, and E are library matches from an OMNIC Specta Multi-Component Search identifying three components. Spectra B and C are both expected breakdown components from the polymer while the material identifi ed in spectrum C of methyl ester was not.

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18 IR Technology for Today’s Spectroscopists August 2019

Nylon hubs, used in the construc-tion of neurovascular catheters, may be manufactured using in-

jection molding. After repeated use, nylon residues build up in the barrel, and these must be removed to prevent contami-nation. This is accomplished by using a purging material that is fed through the injection mold barrel, removing residues as it is passed through. In doing so, the barrel becomes contaminated temporar-ily by the purge material, and this is re-moved by running several blanks of the

material that is normally injection molded using the purged barrel (1).

The industrial client for whom we car-ried out this analysis has switched from one purging material to another. They wished to determine the point at which the hubs are clear of residues associated with the barrel and the purge material. Determination of the point at which the barrel residues and purging materials are no longer present, as contamination in the molded pieces is often estimated using visual inspection alone. However,

The Application of FT-NIR and Multivariate Analysis Methods for Characterization of an Industrial Mold Purging Process

A combination of near infrared (NIR) reflection spectroscopy and multivariate analysis has been used to characterize materials relating to an injection mold barrel purging process. Reference spectra from unprocessed mold and purge materials have been compared with samples prepared after purging to esti-mate the content of residues in samples after a series of purging steps. Based on the results of principal component analysis and multivariate curve resolution, injection molded samples compare best with reference nylon after two purges of the barrel. Comparison of analysis of the results from the NIR and attenuated total reflectance-mid-infrared (ATR-MIR) spectral measurement was carried out to assess whether the NIR measurement was relevant to either the surface or the bulk of the hub samples.

Killian Barton, Michael McAuliffe, and Liam Lewis

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August 2019 IR Technology for Today’s Spectroscopists 19

this method has an inherent uncer-tainty. We present a method based on the combination of near-infrared (NIR) spectroscopy and multivariate analysis techniques that allows for the clear iden-tification of the point at which no further purging is necessary.

NIR spectroscopy is an established technique used for analyzing polymers. Absorption of NIR light by a polymer sample may occur by interaction with vibrational overtones and sum tones of chemical functional groups such as N-H, C-H, and O-H. These functional groups are common to a range of polymers, and contribute to a given polymer’s spectral fingerprint. The spectrum may be used to discriminate between materials and to measure concentrations of mixtures.

Measurement of the NIR spectrum is non-destructive, and sample preparation is generally minimal or unnecessary (2). Principal component analysis (PCA) is a multivariate analysis technique that is sensitive to changes in process conditions. The scores calculated from PCA of a data set allow for visualization of the relation-ships between the samples in a set. Clus-ters, patterns, and trends are revealed, and these are interpreted based on the context of and prior knowledge relating to the sample set (3). Multivariate curve resolu-tion (MCR) is a complementary multivar-iate analysis technique to PCA. It differs from PCA in that the information used in the analysis is not abstract. Loadings describing components calculated using PCA are abstract solutions, whereas those

(a) Purge 1 Blank 4 (b) Purge 1 Blank 5

(c) Purge 2 Blank 1 (d) Purge 2 Blank 5

(e) Purge 3 Blank 1 (f) Purge 3 Blank 5

Figure 1: Visual inspection of the sample hubs; (a) through (f) show different conditions (as indicated for each inset figure).

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20 IR Technology for Today’s Spectroscopists August 2019

calculated using MCR or inputted into an MCR model are related to the actual physical characteristics of the sample. It is often used in the spectroscopic analysis of mixtures (4).

Materials and MethodsNylon pellets, polystyrene pellets, and sample hubs were supplied by Stryker Neurovascular. Sample hubs or “blanks” were molded and collected after purging of the mold barrel. Blanks were collected from each of the five moldings after the first purge. Blanks collected after the sec-ond and third purges were taken from the first and fifth moldings.

Optical imaging of the hubs was car-ried out using an Ash Inspex inspection camera and a Leica M165 inspection microscope. NIR spectra were recorded using a Perkin Elmer Spotlight 400 fitted with a NIRA reflection NIR accessory. Each spectrum was accumulated from 32 scans at 16 cm-1 resolution. ATR-MIR spectra were recorded using a Perkin Elmer UATR accessory. Each spectrum was averaged from 16 scans at a resolu-tion of 1 cm-1.

Multivariate analysis of spectral data was carried out using Camo Unscram-bler software. Principal component analysis (PCA) was calculated using a

(a) Purge 1 Blank 4 (b) Purge 1 Blank 5

(c) Purge 2 Blank 1 (d) Purge 2 Blank 5

(e) Purge 3 Blank 1 (f) Purge 3 Blank 5

Figure 2: Imaging of the hub area measured using the NIR spectrometer. The sampling area of the NIR measurement is shown on sample (e); (a) through (f) show different conditions (as indicated for each inset figure).

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August 2019 IR Technology for Today’s Spectroscopists 21

singular value decomposition (SVD) al-gorithm. PCA was calculated using the first derivative of the NIR spectra. The derivative spectra were calculated using a Savitzky-Golay algorithm with a second order polynomial. Derivative spectra were processed using standard normal variate (SNV) normalization. Multivariate curve resolution (MCR) was calculated using an alternating least squares algorithm with a maximum number of 50 iterations. The constraints of non-negativity and closure were applied to the MCR model. The spectra of the reference polystyrene and nylon were used as pure components in an “initial guess” model. MCR was per-formed on spectra processed using SNV normalization.

Results and DiscussionInitial assessment of the hubs was carried out visually. In the case of the blanks pre-

pared after the first purge, purge residue carried over from the process is visible as cloudy material distributed heteroge-neously through the hub body. The fourth and fifth blanks are included in Figure 1 as a reference to visible hub contamina-tion after purging. The first and fifth blanks prepared after two subsequent purges showed no visible signs of purge residue carry over. With visual examina-tion alone, it is not certain whether the polystyrene used to purge the injection mold barrel is completely absent from these sets of blanks. For example, the cloudy material observed for the blanks prepared after the first purge may be at-tributed to the purge polystyrene, residues from the barrel or a combination of both.

NIR measurements were made on the blank hubs, the purge material and the nylon pellets. Figure 2 shows the part of the hub at which the NIR measurements

3.0

2.0

1.0

Nylon

P1 B5

Polystyrene

0.0

–1.0

–2.0

10000 9000 8000 7000 6000 5000 4000

–3.0

–4.0

Ab

sorb

an

ce (

SN

V)

Wavenumbers (cm–1)

–5.0

Figure 3: NIR spectra (as absorbance vs. wavenumbers) for reference materials nylon, polystyrene, and P1 B5. The spectra presented here are offset, and have been processed using standard normal variate (SNV) correction.

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SPECsupp0819 Wavelength FP Ad pr1f.indd 1 2019-08-13 2:24 PM

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22 IR Technology for Today’s Spectroscopists August 2019

35

30

25Nylon

P1 B5

Polystyrene

20

15

10

4000 3500 3000 2500 2000 1500 1000

5

0

Inte

nsi

ty (

Ab

s)

Wavenumbers (cm–1)

Scores

0.04

0.03

0.02

0.01

0

PC

-2 (

3%

)

PC-1 (95%)

–0.01

–0.02

–0.03

–0.04

–0.2 –0.1 0

Reference Materials Purge 1 Purge 2 Purge 3

0.1 0.2

Figure 4: ATR-MIR spectra (as absorbance vs. wavenumbers) for reference materials nylon, polystyrene, and P1 B5. The spectra presented here are stacked, and have been processed using standard normal variate (SNV) correction.

Figure 5: Principal component analysis (PCA) of “blank” hubs after purging and reference materials (nylon and polystyrene).

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August 2019 IR Technology for Today’s Spectroscopists 23

was made. Figure 3 shows examples of the NIR absorption spectra recorded from the hub samples. The reference spectra for the purge and hub materials have distinct peaks associated with their chemical composition that allow them to be distinguished from one another. The NIR spectrum of polystyrene exhibits ab-sorption peaks related to the first and sec-ond overtones of the aromatic C-H stretch vibration at 5945 cm-1 and 8743 cm-1, re-spectively (5). The NIR spectrum of nylon exhibits absorption peaks assigned to the amide N-H group found at 4880 cm-1 and 6752 cm-1. C-H absorption peaks relating to the first and second overtones of the stretching absorption are observed in the nylon spectrum at 5786 cm-1 and 8263 cm-1 , respectively. In the polystyrene spectrum, these peaks are observed at 5792 cm-1 and 8268 cm-1, respectively (6).

PCA of the spectral data is shown in Figure 5. The blank hubs from the first five runs after the first purge show the

largest scatter in the plot. The first blank after the first purge groups closest with the score calculated for the purge mate-rial. Scores of subsequent samples con-verge toward that of the nylon reference material. Of the blank samples, the fifth hub from the second purge shows the closest score to that of the nylon refer-ence. This is more clearly presented in Figure 6, where the scores for each sam-ple in the first principal component are presented. One can see there that 94% of the variance in x is explained by the first principal component in the PCA model, and it is interpreted as the component that differentiates between the purge residue and the nylon. This result indi-cates that the fifth blank of the second purge has the least post-purge contami-nation relative to the others measured. In the case of both the second and third purges, the fifth blank grouped more closely with the nylon reference spec-trum than the first, indicating that the

Scores

0.1

0

Po

lysty

ren

Nylo

n

P1 B

1

P1 B

2

P1 B

3

P1 B

4

P1 B

5

P2 B

1

P2 B

5

P3 B

1

P3 B

5PC

A S

core

Samples (PC-1) (95%)

–0.1

Figure 6: Scores for the hub test samples and materials from the first principal component.

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24 IR Technology for Today’s Spectroscopists August 2019

fifth blank has less contamination than the first for each purge.

MCR analysis of the spectral data was carried out in order to compare the re-sults with those obtained using the PCA (Figure 7). The trend observed agrees with those found in the results of the PCA. The blanks prepared after the first purge show the largest amount of purge material present relative to samples from subsequent purges. For the second and third purges, the first blank after purging shows a larger degree of purge residue contamination relative to the fifth.

It is assumed that the NIR beam penetrates into the bulk of the hub dur-ing measurement and, in this manner, reveals bulk properties of the sample. Evidence supporting the validity of this assumption was revealed by performing PCA on ATR spectra of the blank hub samples (Figure 4). Figure 8 shows the

scores plot calculated for ATR spectra recorded from the surface of each hub blank. The first principal component (PC 1) describes the difference between the spectral response of the nylon and the polystyrene reference materials. It accounts for 98% of the variance in the data. The first hub of the first purge is the only hub that shows any significant trending toward the polystyrene region of the scores plot. The spectral data of the remaining hubs score similar to the nylon reference for this component. This indicates that the NIR measurements have a better sensitivity to the composi-tion of the bulk of the polymer sample than the ATR measurement.

ConclusionsA combination of NIR and multivariate analysis techniques has allowed for a detailed characterization of changes in

Co

mp

on

en

t co

nce

ntr

ati

on

s

Component-1

1

0.9

0.8

0.7

0.6

0.5

0.4

0.3

0.2

0.1

Samples

P1 B

1

P1 B

2

P1 B

3

P1 B

4

P1 B

5

P2 B

1

P2 B

5

P3 B

1

P3 B

5

0

Component-2

Figure 7: Multivariate curve resolution calculated concentrations of the polystyrene and nylon in the samples hubs. Components 1 and 2 are the polystyrene and nylon, respectively.

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August 2019 IR Technology for Today’s Spectroscopists 25

material composition during a purging process. The information revealed allows for a reliable identification of the point at which the purging process is complete, and no further purging is necessary. This information is useful in the con-text of process management for routine implementation and efficiency; in par-ticular, in an industrial context where unnecessary process steps can lead to large waste in the context of annual ac-cumulation. The technique described is non-destructive, and the results are relevant to the bulk composition of the materials of interest.

References(1) D.V. Rosato and M.V. Rosato, Plastic Product

Material and Process Selection Handbook

(Elsevier Science & Technology Books, Oxford,

United Kingdom, 2004).

(2) K.A.B. Lee and S.C. Johnson, Appl. Spectrosc.

Rev. 28(3), 231–284 (1993).

(3) T. Rajalahti and O.M. Kvalheim, Int. J. Pharm.

417(1–2), 280–290 (2011).

(4) T. Azzouz and R. Tauler, Talanta 74(5), 1201–

1210 (2008).

(5) J. Workman, Jr. and L. Weyer, Practical Guide

and Spectral Atlas for Interpretive Near-Infrared

Spectroscopy (CRC Press, Boca Raton, Florida,

2nd ed., 2012).

(6) P. Taylor, and C.E. Miller, Appl. Spectrosc. Rev.

26(4), 277–339 (1991).

Killian Barton, Michael McAuliffe and

Liam Lewis are with the Centre for Advance

Photonics and Process Analysis (CAPPA), at

the Cork Institute of Technology, in Bishop-

stown, County of Cork, Ireland. Direct corre-

spondence to: [email protected]

Scores

6

5

4

3

2

1

–1

–2

–3

–4

–5

–6

–70 –60 –50 –40 –30 –20 –10

0

0

Reference Materials Purge 1 Purge 2 Purge 3

10 20 30 40 50 60 70

PC

-2 (

1%

)

PC-1 (98%)

Figure 8: Scores plot calculated for the ATR spectra recorded at the surface of selected hub samples from the first and second principal components.

For more information on this topic, please visit our homepage at: www.spectroscopyonline.com

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26 IR Technology for Today’s Spectroscopists August 2019

Elucidation of the structure−func-tion relationships that define the clinical efficacy of therapeutic bio-

logics such as monoclonal antibodies (mAbs) makes protein characterization critical to their development. Though the primary structure of proteins is relatively stable, higher order structure (HOS)—secondary, tertiary and qua-ternary—is labile, susceptible to change triggered by chemical or thermal stress.

Therefore, delivery of a drug entity to the patient with its structure intact, un-changed by manufacture or storage, re-lies on detailed protein characterization across the biopharmaceutical lifecycle. This requirement creates the need for an analytical technique that can char-acterize structure reproducibly across a broad range of concentrations, and that remains viable and reliable in the pres-ence of excipients and additives.

Native Measurement of a Biotherapeutic without Interference from Excipients Using Microfluidic Modulation SpectroscopyA defining requirement in biopharmaceutical development, formulation, and manufacturing is to elucidate and maintain the structure of the drug entity. That work relies on relevant protein characterization, a task complicated by how samples evolve through the drug development lifecycle. The require-ment to change techniques to cope with progressively more concentrated, and complex, multicomponent formulations is a major issue when it comes to comparing datasets and safeguarding structural parity. In this article, we discuss a new infrared spectroscopy technique, microfluidic modulation spectroscopy (MMS), that delivers reproducible protein characterization over close to four orders of magnitude in protein concentration, from 0.1 to 200 mg/mL. This technique can transition with the sample from the earliest stages of development through to manufacture, and present experimental data demonstrating the concentration-independent data that can be generated.

Libo Wang, Ioannis A. Papayannopoulos, Shannon Renn-Bingham, and Jeffrey Zonderman

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August 2019 IR Technology for Today’s Spectroscopists 27

Secondary structure develops from interactions between hydrogen bond donor and acceptor residues associated with repeating units in the primary pep-tide chains of the protein, and is typically characterized by Fourier transform infra-red (FT-IR) spectroscopy and far ultra-violet circular dichroism (far-UV CD). The most common element of second-ary structure is the α-helix, but β-sheet structures are also relatively prevalent, particularly within mAbs, which is one of the most widely used classes of thera-peutic proteins. β-sheet structures consist of β-strands and stretched sections of pep-tide chain, linked via hydrogen bonds (1).

With FT-IR, information relating to secondary structure is extracted from absorption spectra spanning the amide I band, resulting from the C=O stretch vibrations of peptide linkages along the protein backbone. These modes are highly sensitive to changes in secondary structure (2), with features of the amide I band correlated robustly with specific secondary structure elements; sensitivity to β-sheet structure is a particular benefit (3,4) of using the mid-IR. However, from a practical perspective, conventional FT-IR technology has some limitations, includ-ing the relatively high concentration re-quired for measurement, optimally in the range of 10–150 mg/mL, which makes the technique less viable for the earlier stages of drug development, when sample con-centration is typically low. In addition, FT-IR tends to exhibit background drift and poor repeatability, due to the com-plexities of water vapor subtraction and referencing.

The technique of circular dichroism (CD) characterizes samples on the basis of the differential absorption of left-handed and right-handed circularly polarized light that occurs when a molecule con-

tains one or more chiral chromophores. Such chromophores include the peptide bonds associated with secondary struc-ture, which give rise to a CD signal in the far-UV region (180–240 nm) that can be analyzed to determine the relative quantities of major secondary structural elements (5). Far-UV CD is well-suited to more dilute, simple solutions, operating at a relative low concentration of 0.2 mg/mL, for example, when using a cell of 1-mm pathlength. However, commercial prod-ucts are typically formulated at higher concentrations, and the presence of chiral molecules in more complex formulations is also problematic. Typically, a dialysis procedure must be performed to remove excipients in the formulation buffer that interfere with CD signals. Phosphate buff-

MicrofluidicCell

MicrofluidicController

Laser samplingspot

SampleFluid

2 mm

Sample

ReferenceFluid

Reference

Waste/Recycle

DetectorLaser

Figure 1: With MMS, rapid modulation with a matched reference stream produces highly sensitive differential IR scans, eliminating any potential interference from formulation excipients and additives; a tunable, cascade laser and optimized optical set-up enable measurement across a very wide concentration range.

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28 IR Technology for Today’s Spectroscopists August 2019

ered saline (PBS), a buffer used routinely in biological research, is well-character-ized for far-UV CD analysis, and can be used to dilute formulation components that interfere with CD measurements (5).

Switching from far-UV CD to FT-IR as samples become more complex and concentrated, through formulation and

into commercial manufacture, is one way to address the limitations of these techniques. However, this introduces the complicating factor of determining whether any conflicting observations are scientifically relevant, or simply an arti-fact of measurement or data analysis. An alternative strategy is to dilute samples

Figure 3: Buffer subtraction and concentration normalization produces absolute absorbance spectra for the mAb that can be used for detailed structural analysis.

Figure 2: In MMS, continuous modulation between the sample and reference streams produces (a) differential absorbance spectra, shown here for a dilution series; and (b) the plot of maximum diffAU against protein concentration showing strict linearity, highlighting the potential of the technique for quantification.

(a) (b)

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August 2019 IR Technology for Today’s Spectroscopists 29

to extend the application of far-UV CD. This is problematic from the perspective of data relevance, given that proteins are highly sensitive to their environment. The limitations of both of these strategies cre-ates a need for innovative spectroscopy

platforms for the direct measurement of native proteins.

An important step forward in this re-spect is the development of microfluidic modulation spectroscopy (MMS), a tech-nique that harnesses the advantages of IR

Figure 5: Higher order structure (HOS) analysis determines the quantity of specific elements of secondary structure present in the mAb, including beta sheet, beta turn, unordered structure, and alpha helix.

Figure 4: One way to highlight difference, or conversely confirming similarity, between samples is to analyze the second derivative plots, as shown.

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30 IR Technology for Today’s Spectroscopists August 2019

spectroscopy for robust measurement across a very wide dynamic range, with minimal interference from formulation excipients and additives (see Figure 1). In the MMS system, the sample solution and a matching reference stream are rapidly modulated (1–5 Hz) across the laser path to produce differential absorbance spectra

via a process of continuous autoreferenc-ing. The result is nearly drift-free scans background compensated to the buffer of interest, and of superior quality to those produced via conventional FT-IR. Con-centration limitations are also directly addressed through the use of a tunable mid-IR quantum cascade laser that gen-

Figure 7: The HOS of the mAb in the PBS dilution series is closely similar to the formulation dilution series with beta sheet and beta turn the predominant structural elements.

Figure 6: The protein concentration plot for the PBS dilution series showing (a) a very high degree of linearity; and (b) absolute absorbance spectra that are very closely matched, indicating a high degree of structural similarity in the samples.

(a) (b)

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August 2019 IR Technology for Today’s Spectroscopists 31

erates an optical beam around 100 times brighter than that used in a typical FT-IR. Run in continuous wave mode to generate a very accurate, low noise beam, this laser, in combination with a fully optimized optical configuration, delivers highly re-peatable, high sensitivity measurement over a concentration range from 0.1–200 mg/mL. The laser also enables the use of simple detectors with no requirement for nitrogen cooling.

MMS effectively shapes IR spectros-copy into an efficient tool for protein characterization from early drug devel-opment through to manufacture. The following experimental study of a mAb in clinical development demonstrates the capabilities of MMS for the measure-ment of protein samples in the presence of different buffers and across a very broad concentration range.

ExperimentalDilution series were prepared from a mAb stock sample of concentration of 157 mg/mL made up in a formulation buffer. A first dilution series was prepared by mix-

ing volumes of the stock solution with the formulation buffer to create a samples se-ries covering a concentration range from 1 to 80 mg/mL (specifically 1, 5, 10, 20, 40, and 80 mg/mL). A second dilution series was prepared in a strictly analogous way, and covering the same concentration range, by mixing samples of the stock so-lution with a PBS buffer at pH 7.4. In ad-dition, a series of samples of formulation buffer diluted in PBS buffer were prepared as matching buffers for the PBS dilution

Figure 8: Combining second derivative spectra for all of the samples in both buffers confirms the exemplary similarity of secondary structure across both dilution series.

Table I: Similarity scores for the sam-ples confirm that dilution has left the structure essentially unchanged

Conc. (mg/mL)Similarity (%) of

replicates

1 98.19 98.54

5* 99.90 99.90

10 99.73 99.69

20 99.65 99.65

40 99.61 99.62

80 99.55 ---

*Similarity (%) was calculated by comparing to the mean of 5 mg/mL sample replicates

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32 IR Technology for Today’s Spectroscopists August 2019

series. In MMS measurements, the sam-ple is modulated with a relevant buffer, so there is a need for a series of PBS diluted formulation buffer samples matched to the PBS dilution series samples.

All samples from both dilution se-ries were analyzed by MMS (AQS3pro, RedShiftBio), generating differential absorbance spectra for each sample. All samples were tested at a modulation rate of 1 Hz. The instrument automatically determines the back pressure required for optimal fluid flow through the flow cell, to enhance data quality. For samples in the 1–40 mg/mL concentration range, the applied back-pressure was 5 psi and duplicate measurements were carried out for each sample. For the most concen-trated 80 mg/mL samples, which were more viscous, higher back pressures were automatically determined (25 psi for the sample in the formulation buffer, and 10 psi for the sample in the PBS buffer). One measurement was carried out for both of these samples. The measurements made

were subject to comprehensive data anal-ysis using the instruments integral soft-ware package (AQS3delta, RedShiftBio).

Results and DiscussionAnalyzing MMS Data Analysis of the dataset for the first dilu-tion series highlights key features of the data generated by MMS, and how it can be processed to reveal information about secondary structure, and to compare samples.

Figure 2a shows the differential absor-bance spectra produced for the first dilu-tion series; the replicate measurements in-dicate the high repeatability and accuracy. A plot of the maximum diffAU value as a function of concentration (see Figure 2b) shows excellent linearity with an R2

value of 0.9997, illustrating the potential of the technique for protein quantification. Samples of unknown concentration can be accurately quantified using this plot.

With the buffer subtracted and concen-tration normalized, the absolute absorp-

Table II: Detailed HOS data for both dilution series provide further confirmation that the secondary structure of the mAb is unaltered by either dilution or buffer

Samples Conc. (mg/mL)Mean Secondary Structure Composition (%)

Beta Turn Unordered Alpha

In Formulation Buffer

1 60.19 30.50 7.73 1.58

5 61.31 29.63 7.81 1.25

10 61.10 29.22 8.70 0.98

20 61.59 28.94 8.36 1.12

40 61.61 29.40 7.73 1.26

80 61.73 28.88 8.39 1.00

In PBS Buffer

1 61.38 28.85 8.81 0.96

5 62.19 28.74 7.92 1.15

10 61.37 29.01 8.63 0.99

20 61.56 29.22 8.15 1.08

40 61.15 29.07 8.82 0.96

80 61.53 29.32 8.06 1.10

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August 2019 IR Technology for Today’s Spectroscopists 33

tion spectra for each of the samples can be compared directly (see Figure 3). The high degree of overlap in these spectra indicate that the secondary structure of the pro-tein is essentially unchanged by the dilu-tion process across the full concentration range, which is not the case for all proteins.

One way to accentuate structural dif-ferences between samples is to generate second-derivative spectra from absolute absorbance spectra, as a function of wave-number. This data processing step pro-duces the traces shown in Figure 4, which provide further evidence of the close simi-larity of the samples, particularly those in the 5 to 80 mg/mL range.

Protein similarity can also be directly compared via area of overlap (AO) plots (data not shown) which quantify the ex-tent to which the spectra for two samples are similar (see Table I). Using the average AO plot for the two 5 mg/mL samples as the reference for comparison, this analysis indicates that the 1 mg/mL samples have a similarity of 98.2 to 98.5%, while all the remaining samples, across the remainder of the concentration range, have a similar-ity in the range 99.6 to 99.9%.

Finally, because absorption at specific wavenumbers is well-correlated with specific elements of secondary structure, the relative quantities of the different ele-ments can be determined (see Figure 5). The secondary structure of the mAb is shown to consist predominantly of beta sheets (~60%) and beta turns (~30%), with a much smaller fraction of unordered structure and minimal levels of alpha-helix. Levels of each element are extremely consistent across each of the samples.

Analyzing the PBS Dilution Series The data processing steps illustrated in the preceding stage were applied to elucidate the impact of diluting the mAb stock with

PBS buffer. Figure 6 shows the protein concentration plot for the PBS dilution series alongside the absolute absorbance spectra.

These data show that dilution in the PBS has a closely comparable impact to dilution in the formulation buffer. The plot of maximum diffAU against protein concentration, for example, shows similar, comparably high linearity, exhibiting an R2 value of 0.9998. The absolute absor-bance spectra indicate that the structure of the protein is closely similar across the full concentration range, as confirmed by the HOS analysis (see Figure 7).

These results are directly useful when it comes to comparing measurements with far-UV CD with MMS, or, indeed, FT-IR. The mAb stock solution was supplied at a concentration of 157 mg/mL, which is substantially outside the measurement range for far-UV CD, and there are limita-tions with respect to diluent choice, since formulation buffer cannot be used if it contains a significant level of chromo-phores. These data confirm that dilut-ing the sample with PBS, an acceptable, well-characterized buffer for far-UV CD analysis, has no impact on the structure of the protein.

Analyzing Similarity across Both Dilution SeriesIn a final analysis, the two datasets were merged to look at similarity with respect to both concentration and buffer. Figure 8 shows the second derivative spectra for all of the samples; Table II shows the as-sociated HOS data.

These data illustrate that the secondary structure of the mAb is extremely consis-tent, regardless of concentration or buffer. When compared with the 5 mg/mL sam-ple in the formulation buffer, the similar-ity of the 1 mg/mL samples in formulation

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34 IR Technology for Today’s Spectroscopists August 2019

buffer are in the range of 98.2 to 98.5%, while those of all the other samples, in both the formulation and PBS buffer, are between 99.0 and 99.9%, indicating that the structure of the mAb is highly compa-rable across all the samples. The ability of MMS to measure across the full concen-tration range, without interference from either buffer, makes it extremely valuable for elucidating differences between data sets and for effective buffer screening. Here, the results indicate that any discrep-ancies observed between far-UV CD and MMS data are not attributable to either concentration or buffer components.

ConclusionInstrumentation developed to character-ize the secondary structure of proteins across a wide range of conditions, most especially over a broad concentration range, is particularly helpful to biophar-maceutical scientists. The development and manufacture of biopharmaceuticals calls for a detailed understanding and control of the drug entity, within the native formulation environment, and through manufacture and storage to the point of patient delivery. The use of different measurement techniques, espe-cially under different protein conditions, significantly complicates the interpreta-tion of and the analytical workflow. In particular, the comparison of datasets produced using alternative technologies can lead to discrepancies between results that cannot be attributed to the sample with any certainty.

The ability of MMS to measure with high reproducibility and repeatability, across a very wide concentration range, and to generate data unaffected by for-mulation excipients and additives, is extremely valuable within this context. This capability significantly reduces the

need to compare and transfer specifica-tions from one technique or instrument to another, thereby simplifying and nul-lifying risk in the analytical workflow, while at the same time reducing the cost associated with the purchase and ongo-ing maintenance of multiple instruments. Such flexibility makes MMS superior to alternatives such as far-UV CD and FT-IR for the essential task of characterizing the secondary structure of protein, from the earliest stages of drug delivery through to commercial biopharmaceutical manufac-ture and release testing.

References(1) https://proteinstructures.com/Structure/

Structure/secondary-sructure.html

(2) H. Fabian and W. Mantele, Handbook of

Vibrational Spectroscopy, J.M. Chalmers and

P.R. Griffiths, Eds. (John Wiley & Sons, Ltd.,

Chichester, United Kingdom, 2002), pp.

3399–3425.

(3) J.K. Koenig and D.L. Tabb, Analy tical

Applications of FTIR to Molecular and Biological

Systems, J.R. Durig, Ed. (D. Reidel, Boston,

Massachusetts, 1980), pp. 241–255.

(4) A. Dong, P. Huang, and W.S. Caughey,

Biochemistry 29(13), 3303–3308 (1990).

(5) S.M. Kelly and N.C. Price, Curr. Protein Pept.

Sci. 1(4), 349–384 (2000).

Libo Wang and Jeffrey Zonderman

are with RedShift BioAnalytics, Inc., in

Burlington, Massachusetts. Ioannis A.

Papayannopoulos and Shannon Renn-

Bingham are with Celldex Therapeutics, in

Fall River, Massachusetts. Direct correspon-

dence to: [email protected] or iap@

alum.mit.edu

For more information on this topic, please visit our homepage at: www.spectroscopyonline.com

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