issues in genetic testing: real versus not-so-real
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Issues in Genetic Testing: Real versus Not-so-Real. Roberta A Pagon, MD Principal Investigator, GeneTests Professor, Pediatrics University of Washington American Society of Human Genetics 2006 Annual Meeting. Single Gene Disorders. Mutation in one gene alters the phenotype - PowerPoint PPT PresentationTRANSCRIPT
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Issues in Genetic Testing: Real versus Not-so-Real
Roberta A Pagon, MDPrincipal Investigator, GeneTests
Professor, PediatricsUniversity of Washington
American Society of Human Genetics 2006 Annual Meeting
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Single Gene Disorders
• Mutation in one gene alters the phenotype
• Identified by:
Phenotype alone Biochemical genetic testing
▪ Analyte▪ Enzyme
• Molecular genetic (DNA) testing
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Uses of Molecular Genetic Testing
• Medical care◦ Diagnostic◦ Predictive with a treatment
• Personal decision-making◦ Predictive without a treatment◦ Carrier◦ Prenatal
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Vignettes for the classroom
You are 20 years old
Vignette 1: Your father has just been diagnosed with familial adenomatous polyposis (FAP). What does this mean for you?
Vignette 2: Your mother has just been diagnosed with Huntington disease (HD). What does this mean for you?
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• What is FAP?
• What causes it?
• What can I do about it?
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• What is Huntington disease?
• What causes it?
• What can I do about it?
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www.genetests.org
Funded by National Institutes of Health
Located atUniversity of WashingtonSeattle, WA
Information resource for healthcare providers to help integrate genetic services into patient care
The place to go for information
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GeneReviews
• Genetic disease descriptions
• Current information on genetic test use in diagnosis, management, genetic counseling
• Expert-authored, peer-reviewed
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Educational Materials
• Illustrated glossary
• Genetic counseling and testing primer
• PowerPoint presentations
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• What is FAP?
• What causes it?
• What can I do about it?
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APC-Associated Polyposis Conditions
Summary
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Summary
Disease description• Colon cancer syndrome• Polyps (precancerous growths) develop 7-36 years• Colon cancer at 34-43 years
Diagnosis/testing• 95% of patients have a mutation in APC gene
Genetic counseling• Mode of inheritance: Autosomal dominant
APC-Associated Polyposis Conditions
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FAP50% risk
20 y
You
MomDad
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Management
Molecular genetic testing: By 10-12 years of age.
Surveillance:
• Persons with an APC mutation ◦ Annual sigmoidoscopy beginning at age 12 years. ◦ Colectomy (removal of the colon) when polyps appear.
• Persons without an APC mutation◦ Routine colon cancer screening at age 50 years
APC-Associated Polyposis Conditions
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Uses of Molecular Genetic Testing
• Medical care◦ Diagnostic◦ Predictive with a treatment
• Personal decision-making◦ Predictive without a treatment◦ Carrier◦ Prenatal
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Testing Strategy for FAP
Test Dad
Mutation detected• Direct testing useful• Proceed with testing family
• Direct testing not useful • Do not proceed with testing family
No mutation detected STOP
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Testing Strategy = Science LessonTesting Strategy = Science Lesson
Most genes have 100s of disease-causing mutations
Genes have benign sequence variants (polymorphisms) which have no effect on health
Sometimes it is unclear whether a sequence variant is disease-causing or benign
The disease-causing mutation must be known before relatives at-risk can be tested
Genetic tests usually cannot detect all disease-causing mutations in a gene
Disease-causing mutations "run true" in families
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FAPYou
Uncle Aunt
GrandmaGrandpa
Indeterminant risk
BrotherBrother
50% risk
Dad Mom
Great aunts and uncles
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Testing and Genetic Counseling Strategy
Test Dad
Mutation detected• Direct testing useful• Proceed with
• Genetic counseling• Genetic testing of all at-risk relatives• Surveillance of mutation-positive relatives only
• Direct testing not useful
No mutation detected STOP
Proceed with• Genetic counseling• Surveillance of at-risk relatives
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Ethics LessonEthics Lesson
• Diagnosis of a genetic disorder has implications Diagnosis of a genetic disorder has implications for many family members.for many family members.
• Use of genetic testing has implications Use of genetic testing has implications for many family membersfor many family members
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• What is Huntington disease?
• What causes it?
• What can I do about it?
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Huntington Disease
Summary
Disease description• Progressive motor, cognitive, and psychiatric disturbances• Onset: 35 – 44 years• Death: 15 – 18 years later
Diagnosis/testing• 100% of patients have a mutation in HD gene
Genetic counseling• Mode of inheritance: Autosomal dominant
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HD50% risk
20 y
You
MomDad
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Management
• No cure
• Supportive medical care (e.g., nutrition, comfort)
• Psycho-social support for family
Huntington Disease
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Uses of Molecular Genetic Testing
• Medical care◦ Diagnostic◦ Predictive with a treatment
• Personal decision-making◦ Predictive without a treatment◦ Carrier◦ Prenatal
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Ethics LessonEthics Lesson
Why do predictive testing when no cure exists?
Personal decision-making
• Education• Employment• Life experiences• Family planning
When: > age 18 years • Informed decision
Why not test children who are < age 18 years?• Social stigma (family, education, relationships)• Deprives individual of the right to choose to know versus not know
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Testing Strategy = Science LessonTesting Strategy = Science Lesson
Many inherited conditions mimic each other; therefore, the diagnosis must be secure
before predictive testing is used.
Conclusion: Must confirm the diagnosis in an affected relative first
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HD
Indeterminant risk
50% risk
Uncle Aunt
You SisterSister
Dad Mom
GrandmaGrandpa
Great aunts and uncles
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Testing andGenetic Counseling Strategy
Test Mom
Mutation detected• Direct testing useful• Proceed with
• Genetic counseling• Genetic testing of at-risk adult relatives who choose to be tested
• Diagnosis not known
No mutation detected STOP
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Direct to Consumer Testing
• What is the disorder for which the test is being used?
• What is the test?
• What evidence links the test to the disorder?
• How is the disorder usually diagnosed?
• What are the implications of a positive test result vs a negative test result on medical management? Personal decision-making? Risks to other family members?
• Who is going to help explain the results to all the family members who need to know?
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“Personalized Medicine”
Common complex disorders: Identify
at-risk individuals in population
(e.g., colon cancer)
Single gene disorders: Clarify genetic status of at-risk relatives
(e.g., FAP)
PopulationScreening
CascadeScreening
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“Personalized Medicine”
Population screening to identify genetic predisposing risk factors in order to reduce the risk by changing: ? diet, ?behavior, ?life style, ?environmental exposures ?medications.
Vignette: You are a 40 yo biology professor. Your primary care doctor does a “colon cancer” test to define your risk of colon cancer. What are you going to do differently?
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Issues in Genetic Testing: Real versus Not-so-Real