itr 5’
DESCRIPTION
ORF codant la transposase (Tnp). ITR 5’. ITR 3’. Hsmar1:. miHsmar1 (80 pb). ccd B +. ccd B +. KanaR. KanaR. pUC ori. pUC ori. a. pDONR221-CmR -. ITR3pA. mini-Mos1. Random Integrations in the pDONR221-CmR -. lacZ’. AmpR. pUC ori. - PowerPoint PPT PresentationTRANSCRIPT
ITR 5’ ITR 3’
ORF codant la transposase (Tnp)
Hsmar1:
miHsmar1 (80 pb)
b.
Position TA locationin ccdB1170-tggctgtgTATCAGG/clone1/CCTGATAtaagggag (ccdB 3’UTR)1189-ctgacattTATCAGG/clone2/CCTGATAtattcccc (ccdB stop codon)1211-catcaggtTATCAGG/clone3/CCTGATAatggcgtt (ccdB ORF)1471-ctcttttaTATCAGG/clone4/CCTGATAggtgtaaa (ccdB ORF)1477-tataggtgTATCAGG/clone5/CCTGATAaaccttaa (ccdB ORF)
ccdB+
KanaR
pUC ori
a.
ccdB+
KanaR
pUC oripUC ori
AmpR
lacZ’
mini-Mos1pDONR221-CmR- ITR3p
A
Random Integrations in the pDONR221-CmR-
Selection of the transposition events in ccdB- by tranfecting in DH5 bacteria and
plating on LB-kanamycin petri dishes
a.1
8711357
18 13074
35 14791
52 164108
70 182126
87 199143
123456
d.3’ITR (TA)TCAGGTGTACAAGTATGAAATGTCGTTT5’ITR (TA)cCAGGTGTACAAGTAgGgAATGTCGgTT 104 107
b.1 2 3 4 5 6
Free ITR
Complexes
Probes
0.100.120.140.160.180.200.22
50 70 90 110 130 150Probe Center
Rfc.
TA 5’5’ *
Non Transferred strand Transferred strandTA 5’
5’
*
T
ATCAGGTGTACAAGTATGAAATGTCGTT
tcT
gga
tgatc
g
C
TAGTCCA
ATGTTCATACTTT
ACA
GCAAA
agA
cct
actag
ct
G+A
PEC1
SEC2
G+A
PEC1
SEC2
5’ gaactagtggatc TA TCAGGTGTACAAGTATGAAATGTCGTTTgatc 3’ (NT)3’ cttgatcacctag AT AGTCCACATGTTCATACTTTACAGCAAActag 5’ (T)
a.
b.
+
5’ nnnTAT+1C+2A+3GGTGT… 3’ (NT)3’ nnnATA+1G+2T+3CCACA… 5’ (T)
+ + + +Mos1
5’ nnnTAA+1C+2A+3GGTTG… 3’ (NT)3’ nnnATT+1G+2T+3CCAAC… 5’ (T)
*
* * * *Himar1
5’ nnnTAT+1T+2A+3GGTTG… 3’ (NT)3’ nnnATA+1A+2T+3CCAAC… 5’ (T)
* * *
* * *Hsmar1
d.
a.
b.
c.
Mobilité des Packs miHsmar1
Question caduque
Evolution du projet dans Modulome
Fabriquer un outil pour inventorier les miHsmar1 dans
les génomes de primates