kyle stern amanda romag, dr. harsh bias, dr. nicole donofrio, dr. john pelesko
DESCRIPTION
An experimental and mathematical study of M. oryzae spore germination and dispersal in the presence of host and non-host volatiles. Kyle Stern Amanda Romag, Dr. Harsh Bias, Dr. Nicole Donofrio, Dr. John Pelesko. Magnaporthe oryzae. Fungus is also known as “rice blast” disease - PowerPoint PPT PresentationTRANSCRIPT
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Kyle SternKyle SternAmanda Romag, Dr. Harsh Bias, Dr. Nicole Donofrio, Dr. John PeleskoAmanda Romag, Dr. Harsh Bias, Dr. Nicole Donofrio, Dr. John Pelesko
An experimental and mathematical An experimental and mathematical study of study of M. oryzae M. oryzae spore germinationspore germinationand dispersal in the presence of host and dispersal in the presence of host
and non-host volatilesand non-host volatiles
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Magnaporthe oryzae
• Fungus is also known as “rice blast” disease• Thought to be a potential bio-terrorism weapon
during the mid-twentieth century• Kills enough rice per year to feed over 60 million
people worldwide• Also infects barley and wheat crops
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The destructive process
• Spore lands on a leaf via dispersal through the air• Spore sticks to the leaf with sticky substance on
surface of its body• Germination begins:
• Moisture• Hard surface• Dark• Room temperature
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The destructive process• Spore begins to pump fluids from its body into the end of
the germ tube • Causes a swelling at the end of the germ tube • Appressorium develops• Pressure causes appressorium to swell• Penetration peg infiltrates the plant leaf• Fungus invades the plant• Noticeable brownish-yellow lesions in the plant leaves• Plant dies
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Normal barley leaf
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After the infection
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Volatile Compounds• Emitted from a plant in gas form• Farnesyl acetate (C17H28O2 ), a volatile of broad
bean, inhibits spread of bean rust fungus• Limonene (C10H16) – volatile of rice• Other volatiles?
– Gas chromatography/ mass spectrometry– None found yet
Limonene:
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The Two Assays• Germ tube assay
– Do volatile compounds assist in M. oryzae germ tube growth?
– Do germ tubes grow in specific directions?• Spore dispersal/sedimentation assay
– Are spores actively or passively released from their stalks?
– Do volatile compounds assist in M. oryzae spore dispersal?
– At what velocity and acceleration are spores released?– Is there a particular force causing the release?
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The Germ Tube Assay
• Volatile incorporated into water agar• Spore suspension created using
sporulating colony• Spore suspension dropped on empty plate
of plain water agar• Strip of volatile in water agar cut out and
placed in plate containing spore suspension
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The Germ Tube Assay• Plate sealed and placed in dark drawer for
24 hours• Viewed at 6.3x magnification under
dissecting microscope
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The Germ Tube Assay
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The Germ Tube Assay
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Concentration Gradient• Volatiles must diffuse into the agar where the spores
are germinating. • The concentration gradient of a compound in water
agar, C(x,t), is found via the following partial differential equation:
Solution:
SporesVolatile
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The Dispersal & Sedimentation Assay
• Empty Petri dish prepared with two sterile glass slides
• V8 agar cut in half through the diameter and placed directly on top of glass slides
• Side of V8 agar perpendicular to bottom of dish swabbed with sporulating M. oryzae
• Volatile placed in non-control plates
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• Plate left unsealed and placed in fungal growth chamber for eight to ten days
• Viewed under dissecting microscope
The Dispersal & Sedimentation Assay
M. oryzae
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The Dispersal & Sedimentation Assay
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The Dispersal & Sedimentation Assay
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Germ Tube Results
• Initial results show that germ tube growth direction is random
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Germ Tube ResultsRose Plot
N = 100
N = 45N = 27 Farnesyl Acetate Limonene
Random
M. oryzae M. oryzae
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Germ Tube ResultsRose Plot
N = 100000N = 1000
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Dispersal & Sedimentation Results
The Volume of an M. oryzae Spore
- 30 spores measured using ocular micrometer
Mean length: 26.2 μmStandard deviation: 3.585 μm
Mean width: 11.233 μmStandard deviation: 1.612 μm
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Dispersal & Sedimentation Results
The Volume of an M. oryzae Spore
- Is a spore ellipsoidal or something else?
Spore.mw
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Dispersal & Sedimentation Results
The Volume of an M. oryzae Spore
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Dispersal & Sedimentation ResultsThe Volume of an M. oryzae Spore
Let w = hV = (πlwh)/6 = 1730.98 μm3
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Dispersal & Sedimentation ResultsThe Mass of an M. oryzae Spore
m = ρVm = ρV
Let ρ = 1000 kg/mLet ρ = 1000 kg/m33, the density of water, the density of waterm = 1000 * 1.731 x 10m = 1000 * 1.731 x 10-15-15 kg kg
m = 1.731 x 10m = 1.731 x 10-12-12 kg kg
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Dispersal & Sedimentation ResultsThe mechanics of spore dispersal
Solution:
a = radius of the spore,μ = absolute viscosity of air at room temperature,K = shape factor of the ellipsoid given by:
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Time it takes a free-falling spore to reach the ground: between 70 and 110 seconds.
Terminal vertical velocity:between 56.96μm/s and 90.86μm/s downward
Velocity of a spore in freefall:
Dispersal & Sedimentation ResultsThe mechanics of spore dispersal
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Dispersal & Sedimentation ResultsDistribution of Dispersing Spores
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Dispersal & Sedimentation ResultsDistribution of Dispersing Spores
Control
N = 1340
Mean: 510.8527
Std. Dev.: 334.2456
F. Acetate
N = 68
Mean: 556.6809
Std. Dev.: 398.3656
LimoneneN = 289
Mean: 823.1248
Std. Dev.: 397.2171
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Dispersal & Sedimentation ResultsRandom Walk of a Spore
• A spore that does not avoid the block of agar will hit it and either – stick to it– bounce off of it
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Dispersal & Sedimentation ResultsRandom Walk of a Spore
• The distributions are almost identical.
Stick, N=10000 Bounce, N=10000
Simulated Distance Simulated Distance
Freq
uenc
y
Freq
uenc
y
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Conclusions
• Spores are actively released.• Some force is pushing them from their
stalks. • The presence of limonene is assisting in
the dispersal process.
• Germ tubes grow in random directions regardless of any volatiles present in the assay.
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Future Work
• GC-MS testing on rice, lima bean, and barley plants
• Determine the diffusion coefficients of the volatiles
• Determine the underlying force causing spores to disperse
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Future Work
• Direct extraction of volatiles
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The Dispersal & Sedimentation Assay• Optimize spore dispersal assay so that healthy leaves can be placed in the dish with the fungus
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References• 1 Trail, F., Gaffoor, I., Vogel, S. 2005. “Ejection mechanics and
trajectory of the ascospores of Gibberella zeae”. Fungal 42, 528-533.
• 2 Clarkson University. “Drag Force and Drag Coefficient”. <http://people.clarkson.edu/~rayb/aerosol/hydrodynamic/hydro4.htm>.
• 3 Mendgen, K., Wirsel, S., Jux, A., Hoffmann, J., Boland, W. 2006. “Volatiles modulate the development of plant pathogenic rust fungi”. Planta 224, 1353-1361.
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AcknowledgmentsThanks:
Howard Hughes Medical Institute
University of Delaware Undergraduate Research Program
University of Delaware Department of Mathematical Sciences
University of Delaware Department of Plant and Soil Sciences
Dr. Harsh Bais
Dr. Nicole Donofrio
Dr. John Pelesko
And…
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AcknowledgmentsMy awesome lab partner, Mandy, who had to put up with me.