laboratory and in situ experiments of limestone ...rinsing in sterile water, sonication to release...
TRANSCRIPT
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Laboratory and In Situ Experiments of Limestone Colonization by Aerobic Bacteria
in Karst
and
Preliminary Study of Populations of Rotifers and Crustaceans at the site of Lowest
Colonization
JCP Karst workshop AUSTIN February 2005
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Part I
BACTERIAL COLONIZATION IN KARST
JCP Karst workshop AUSTIN February 2005
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In situ investigations
Objective:
To observe the evolution of the biofilms developed on sterile stone
chips immersed in karst ground water
JCP Karst workshop AUSTIN February 2005
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Study sites
Fissured and contaminated
zones
Low permeability and
uncontaminated zone
Borehole environments
JCP Karst workshop AUSTIN February 2005
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MethodologyImmersion of rock chips
Fissured sites : at the level where the borehole crosses a main drain.Low permeability site : 15 m below the average water level.
Monthly sampling of rock chipsEnumeration and identification of the bacterial biofilm fixed on the sampled rock chips
JCP Karst workshop AUSTIN February 2005
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Rock types and immersion device
Portland limestoneLimestone marlGranite
Holes
Rock chips
Stainless steel connection
Stopper
JCP Karst workshop AUSTIN February 2005
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Bacterial analysis
Estimation of the sampled rock chip surfaceRinsing in sterile water, sonication to release and disaggregate the biofilm attachedEnumeration of the obtained suspension on R2A mediumIdentification of each colony type to the genus level
JCP Karst workshop AUSTIN February 2005
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Laboratory experiments
ObjectiveTo determine to what degree limestone is colonized
compared to colonization of PVC (known to be readily colonized by bacteria)
2 bacteria 2 media
JCP Karst workshop AUSTIN February 2005
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Materials
Supports: Portland limestone chips and PVC fragments sterilized by autoclaveMedia
Medium A is a synthetic medium designed to facilitate biofilm formation on a variety of surfacesMedium B consists of karst ground water from HV4, sterilized by filtration (0.22µm)
BacteriaE. coli ATCC 10536P. fluorescens isolated from HV4
JCP Karst workshop AUSTIN February 2005
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Methodology
In flasks: one type of support, medium (500ml), inoculum of one bacterial strain resulting in initial concentration of 1.105 CFU/mlIncubation 20°C, 3 weeks with 2 agitations dailyEvery 3 days
replacement of media by new sterile media of the same typeSampling of supports
Estimation of support surface, rinsing, sonication and enumeration of the disaggregated biofilm as described above
JCP Karst workshop AUSTIN February 2005
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ResultsIn situ experiments
Bacterial colonization of rock chips
JCP Karst workshop AUSTIN February 2005
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Statistical study
No significant differences between the different rock
types
Significant differences between
the boreholes
Contaminated boreholesJCP Karst workshop AUSTIN February 2005
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Qualitative study
JCP Karst workshop AUSTIN February 2005
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ResultsLaboratory experiments
JCP Karst workshop AUSTIN February 2005
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Conclusions
Limestone (and granite) surfaces can support bacterial colonizationKarst water environments are hostile to biofilm developmentEnteric bacterial contamination seems unlikely to be persistent once the contamination source is removed
FLUSHING ? PREDATION ?
JCP Karst workshop AUSTIN February 2005
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Part II
Preliminary study to investigate populations of rotifers and crustaceans in
Borehole LB8
JCP Karst workshop AUSTIN February 2005
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Materials and methods
Sampling of 1.5 L from the karst drain intersected by LB8Filtration of the sample (5 µm) Agitation of the membrane in a fixative and preservative solutionColoring zooplankton by adding a vital dyeMicroscopic identification of zooplankton
JCP Karst workshop AUSTIN February 2005
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« SEBA TM « Sampler
Core of water
1.5 l
JCP Karst workshop AUSTIN February 2005
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Qualitative study
Most of zooplankton were
RotifersAmphipods gammaridae (Niphargus)
Copepods and their larval step
JCP Karst workshop AUSTIN February 2005
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Rotifer lepadella
JCP Karst workshop AUSTIN February 2005
40 µm
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Amphipod Gammaridae(Niphargus)
1 cm
JCP Karst workshop AUSTIN February 2005
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CopepodKiefferiella delamarei
♂
♂♀100 µm
Nauplius
JCP Karst workshop AUSTIN February 2005
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Quantitative observations
Evolution of zooplankton from LB8
0
10
20
30
40
50
60
14/01/02 14/03/02 11/05/02 13/05/02 22/05/02 30/05/02 dates
Organismunits in 1.5 L
Rotifers Amphipods K. dellamarei Nauplius others
JCP Karst workshop AUSTIN February 2005