listofresearchproductsand achievements - labri · 178 appendix f. list of research products and...

F

List of research products andachievements

176 APPENDIX F. LIST OF RESEARCH PRODUCTS AND ACHIEVEMENTS

F.1. COMBINATORICS AND ALGORITHMS 177

F.1 Combinatorics and Algorithms

F.1.1 Scientific productionPublications

Peer-reviewed journals (international)

[RI1] Y. Afek, E. Gafni, S. Rajsbaum, R. Michel, and C. Travers, The k-simultaneous consensusproblem, Distributed Computing, 22 (2010), pp. 185–196.

[RI2] A. Akhavi, J.-F. Marckert, and A. Rouault, On the reduction of a random basis, ESAIM:Probability and Statistics, 13 (2009), pp. 437–458.

[RI3] F. Alexandre, Cortical basis of communication: local computation, coordination, attention, NeuralNetworks, 22 (2009), pp. 126–133.

[RI4] M. H. Albert, M. D. Atkinson, M. Bouvel, A. Claesson, and M. Dukes, On the inverseimage of pattern classes under bubble sort, Journal of Combinatorics, 2 (2011), pp. 231–244.

[RI5] M. H. Albert, M. D. Atkinson, M. Bouvel, N. Ruškuc, and V. Vatter, Geometric grid classesof permutations, Transactions of the American Mathematical Society, 365 (2013), pp. 5859–5881.

[RI6] L. Alecu, H. Frezza-Buet, and F. Alexandre, Can self-organization emerge through dynamicneural fields computation?, Connection Science, 23 (2011), pp. 1–31.

[RI7] D. Alistarh, S. Gilbert, R. Guerraoui, and C. Travers, Generating fast indulgent algorithms,Theory Comput. Syst., 51 (2012), pp. 404–424.

[RI8] D. Alistarh, S. Gilbert, R. Guerraoui, and C. Travers, Of choices, failures and asynchrony:The many faces of set agreement, Algorithmica, 62 (2012), pp. 595–629.

[RI9] O. Amini, F. Mazoit, N. Nisse, and S. Thomassé, Submodular partition functions, DiscreteMathematics, 309 (2009), pp. 6000–6008.

[RI10] A. O. Ardiles, C. C. Tapia-Rojas, M. Mandal, F. Alexandre, A. Kirkwood, N. C. Ine-strosa, and A. G. Palacios, Postsynaptic dysfunction is associated with spatial and object recogni-tion memory loss in a natural model of alzheimer’s disease., Proceedings of the National Academy ofSciences, 109 (2012), pp. 13835–40.

[RI11] A. Asinowski, G. Barequet, M. Bousquet-Mélou, T. Mansour, and R. Pinter, Ordersinduced by segments in floorplan partitions and (2-14-3,3-41-2)-avoiding permutations, The ElectronicJournal of Combinatorics, 20 (2013).

[RI12] H. Attiya, E. Hillel, and A. Milani, Inherent limitations on disjoint-access parallel implemen-tations of transactional memory, Theory Comput. Syst., 49 (2011), pp. 698–719.

[RI13] H. Attiya and A. Milani, Transactional scheduling for read-dominated workloads, J. Parallel Dis-trib. Comput., 72 (2012), pp. 1386–1396.

[RI14] J.-C. Aval, On the symmetry of the partition function of some square ice models, Theoretical andMathematical Physics, 161 (2009), pp. 1582–1589.

[RI15] J.-C. Aval and F. Bergeron, Co-quasi-invariant spaces for finite complex reflection groups, Jour-nal of Combinatorial Theory, Series A, 119 (2012), pp. 1432–1446.

[RI16] J.-C. Aval, N. Bergeron, and H. Li, Non-commutative combinatorial inverse systems, Interna-tional Journal of Algebra, 4 (2010), pp. 1003 – 1020.


[RI17] J.-C. Aval, A. Boussicault, M. Bouvel, and M. Silimbani, Combinatorics of non-ambiguoustrees, Advances in Applied Mathematics, 56 (2014), pp. 78–108.

[RI18] J.-C. Aval, A. Boussicault, and S. Dasse-Hartaut, Dyck tableaux, Theoretical ComputerScience, 502 (2013), pp. 195–209.

[RI19] J.-C. Aval, A. Boussicault, and P. Nadeau, Tree-like tableaux, The Electronic Journal of Com-binatorics, 20 (2013).

[RI20] J.-C. Aval, M. D’Adderio, M. Dukes, A. Hicks, and Y. Le Borgne, Statistics on parallel-ogram polyominoes and a q, t-analogue of the Narayana numbers, Journal of Combinatorial Theory,Series A, 123 (2014), pp. 271–286.

[RI21] J.-C. Aval and P. Duchon, Enumeration of alternating sign matrices of even size (quasi-)invariantunder a quarter-turn rotation, Electronic Journal of Combinatorics, 17 (2010).

[RI22] J.-C. Aval and P. Duchon, Half-turn symmetric FPLs with rare couplings and tilings of hexagons,Theoretical Computer Science, 502 (2013), pp. 143–152.

[RI23] J.-C. Aval and X. G. Viennot, The product of trees in the Loday-Ronco algebra through Catalanalternative tableaux, Seminaire Lotharingien de Combinatoire, 63 (2010).

[RI24] A. Bacher, Average site perimeter of directed animals on the two-dimensional lattices, DiscreteMathematics, 312 (2012).

[RI25] A. Bacher and M. Bousquet-Mélou, Weakly directed self-avoiding walks, Journal of Combina-torial Theory, Series A, 118 (2011), pp. 2365–2391.

[RI26] E. Bampas, D. Bilò, G. Drovandi, L. Gualà, R. Klasing, and G. Proietti, Network verifi-cation via routing table queries, Journal of Computer and System Sciences, (2014).

[RI27] O. Baudon, J. Bensmail, R. Kalinowski, A. Marczyk, J. Przybylo, and M. Wozniak, Onthe cartesian product of an arbitrarily partitionable graph and a traceable graph, Discrete Mathematicaland Theoretical Computer Science (DMTCS), 16 (2014), pp. 225–232.

[RI28] O. Baudon, J. Bensmail, J. Przybylo, and M. Wozniak, Partitioning powers of traceable orhamiltonian graphs, Theoretical Computer Science, 520 (2014).

[RI29] O. Baudon, J. Bensmail, J. Przybylo, and M. Wozniak, Partitioning powers of traceable orhamiltonian graphs, Theoritical Computer Science, 520 (2014).

[RI30] O. Baudon, J. Bensmail, and E. Sopena, An oriented version of the 1-2-3 conjecture, Discus-siones Mathematicae Graph Theory, (2014).

[RI31] O. Baudon, F. Foucaud, J. Przybylo, and M. Wozniak, On the structure of arbitrarily par-titionable graphs with given connectivity, Discrete Applied Mathematics, 162 (2014), pp. 381–385.

[RI32] O. Baudon, F. Gilbert, and M. Wozniak, Recursively arbitrarily vertex-decomposable graphs,Opuscula Mathematica, 32 (2012), pp. 689–706.

[RI33] O. Baudon, J. Przybylo, and M. Wozniak, On minimal arbitrarily partitionable graphs, Infor-mation Processing Letters, 112 (2012), pp. 697–700.

[RI34] F. Bassino, M. Bouvel, A. Pierrot, and D. Rossin, Deciding the finiteness of the number ofsimple permutations contained in a wreath-closed class is polynomial, Pure Mathematics and Applica-tions, 21 (2011), pp. 119–135.

[RI35] F. Bassino, M. Bouvel, and D. Rossin, Enumeration of pin-permutations, Electronic Journal ofCombinatorics, 18 (2011).


[RI36] F. Bazzaro and C. Gavoille, Localized and compact data-structure for comparability graphs,Discrete Mathematics, 309 (2009), pp. 3465–3484.

[RI37] N. R. Beaton, M. Bousquet-Mélou, J. de Gier, H. Duminil-Copin, and A. J. Guttmann,The critical fugacity for surface adsorption of self-avoiding walks on the honeycomb lattice is 1 +

√2,

Communications in Mathematical Physics, 326 (2014), pp. 727–754.

[RI38] L. Beaudou, P. Dorbec, P. Jha, and S. Gravier, On planarity of direct product of multipartitecomplete graphs, Discrete Mathematics, Algorithms and Applications, 1 (2009), pp. 85–104.

[RI39] L. Beaudou, S. Gravier, S. Klavzar, M. Kovse, and M. Mollard, Covering codes in sier-pinski graphs, Discrete Mathematics and Theoretical Computer Science, 12 (2010), pp. 63–74.

[RI40] O. Beaumont, N. Bonichon, L. Eyraud-Dubois, and P. Uznanski, Broadcasting on largescale heterogeneous platforms under the bounded multi-port model, IEEE Transactions on Parallel andDistributed Systems, (2013).

[RI41] O. Beaumont, L. Eyraud-Dubois, H. Rejeb, and C. Thraves-Caro, Heterogeneous resourceallocation under degree constraints, IEEE Transactions on Parallel and Distributed Systems, (2012).

[RI42] J. Bensmail, On the longest path in a recursively partitionable graph, Opuscula Mathematica, 33(2013).

[RI43] J. Bensmail, On the complexity of partitioning a graph into a few connected subgraphs, Journal ofCombinatorial Optimization, (2014).

[RI44] J.-C. Bermond, R. Klasing, N. Morales, S. Pérennes, and P. Reyes, Gathering radiomessages in the path, Discrete Mathematics, Algorithms and Applications, 5 (2013), pp. 1–28.

[RI45] O. Bernardi and N. Bonichon, Catalan’s intervals and realizers of triangulations, Journal ofCombinatorial Theory Series A, 116 (2009), pp. 55–75.

[RI46] O. Bernardi and M. Bousquet-Mélou, Counting colored planar maps: algebraicity results, Jour-nal of Combinatorial Theory, Series B, 101 (2011), pp. 315–377.

[RI47] N. Bonichon, M. Bousquet-Mélou, and E. Fusy, Baxter permutations and plane bipolar ori-entations, Seminaire Lotharingien de Combinatoire, 61A (2010).

[RI48] N. Bonichon, C. Gavoille, N. Hanusse, and L. Perkovic, Tight stretch factors for l1- andl∞-delaunay triangulations, Computational Geometry Theory and Applications, (2014).

[RI49] M. Bousquet-Mélou, The expected number of inversions after n adjacent transpositions, DiscreteMathematics and Theoretical Computer Science, 12 (2010), pp. 65–88.

[RI50] M. Bousquet-Mélou, Families of prudent self-avoiding walks, Journal of Combinatorial TheorySeries A, 117 (2010), pp. 313–344.

[RI51] M. Bousquet-Mélou, Counting permutations with no long monotone subsequence via generatingtrees and the kernel method, Journal of Algebraic Combinatorics, 33 (2011), pp. 571–608.

[RI52] M. Bousquet-Mélou, On the importance sampling of self-avoiding walks, Combinatorics, Proba-bility and Computing, (2014).

[RI53] M. Bousquet-Mélou and G. Chapuy, The vertical profile of embedded trees, The ElectronicJournal of Combinatorics, 19 (2012).

[RI54] M. Bousquet-Mélou, G. Chapuy, and L.-F. Préville-Ratelle, The representation of thesymmetric group on m-Tamari intervals, Advances in Mathematics, 247 (2013), pp. 309–342.


[RI55] M. Bousquet-Mélou, A. Claesson, M. Dukes, and S. Kitaev, (2+2)-free posets, ascent se-quences and pattern avoiding permutations, Journal of Combinatorial Theory, Series A, 117 (2010),pp. 884–909.

[RI56] M. Bousquet-Mélou, E. Fusy, and L.-F. Préville Ratelle, The number of intervals in them-Tamari lattices, The Electronic Journal of Combinatorics, 18 (2012).

[RI57] M. Bousquet-Mélou, M. Lohrey, S. Maneth, and E. Noeth, Xml compression via directedacyclic graphs, ACM Transactions on Computer Systems, (2014).

[RI58] M. Bousquet-Mélou and M. Mishna, Walks with small steps in the quarter plane, ContemporaryMathematics, 520 (2010), pp. 1–40.

[RI59] M. Bousquet-Mélou, J. Propp, and J. West, Perfect matchings for the three-term Gale-Robinson sequences, The Electronic Journal of Combinatorics, 16 (2009).

[RI60] M. Bousquet-Mélou and K. Weller, Asymptotic properties of some minor-closed classes ofgraphs, Combinatorics, Probability and Computing, (2014).

[RI61] A. Boussicault, Operations on partially ordered sets and rational identities of type A, DiscreteMathematics and Theoretical Computer Science, 15 (2013), pp. 13–32.

[RI62] A. Boussicault and V. Féray, Application of graph combinatorics to rational identities of typeA, The Electronic Journal of Combinatorics, 16 (2009).

[RI63] A. Boussicault, V. Féray, A. Lascoux, and V. Reiner, Linear extension sums as valuationsof cones, Journal of Algebraic Combinatorics, 35 (2012), pp. 573–610.

[RI64] A. Boussicault, C. Tollu, and J.-G. Luque, Hyperdeterminantal computation for the Laughlinwave function, Journal of Physics A: Mathematical and Theoretical, 42 (2009), pp. 145301.1–145301.13.

[RI65] M. Bouvel, C. Chauve, M. Mishna, and D. Rossin, Average-case analysis of perfect sorting byreversals (journal version), Discrete Mathematics, Algorithms and Applications, 03 (2011), pp. 369–392.

[RI66] M. Bouvel and L. Ferrari, On the enumeration of d-minimal permutations, Discrete Mathematicsand Theoretical Computer Science, 15 (2013), pp. 33–48.

[RI67] M. Bouvel and O. Guibert, Refined enumeration of permutations sorted with two stacks and aD8-symmetry., Annals of Combinatorics, 18 (2014), pp. 199–232.

[RI68] O. Borodin, A. Glebov, M. Montassier, and A. Raspaud, Planar graphs without 5- and 7-cycles and without adjacent triangles are 3-colorable., Journal of Combinatorial Theory, Series B, 99(2009), pp. 668–673.

[RI69] O. Borodin, A. Ivanova, M. Montassier, P. Ochem, and A. Raspaud, Vertex decompositionsof sparse graphs into an edgeless subgraph and a subgraph of maximum degree at most k, Journal ofGraph Theory, 65 (2010), pp. 83–93.

[RI70] O. Borodin, A. Ivanova, M. Montassier, and A. Raspaud, (k,1)-coloring of sparse graphs,Discrete Mathematics, 312 (2012), pp. 1128–1135.

[RI71] O. Borodin, M. Montassier, and A. Raspaud, Planar graphs without adjacent cycles of lengthat most seven are 3-colorable, Discrete Mathematics, 310 (2010), pp. 167–173.

[RI72] B. Brešar, P. Dorbec, W. Goddard, B. Hartnell, M. Henning, S. Klavzar, and D. Rall,Vizing’s conjecture: A survey and recent results, Journal of Graph Theory, 69 (2012), pp. 46–76.

[RI73] B. Brešar, F. Kardoš, J. Katrenič, and G. Semanišin, Minimum k-path vertex cover, DiscreteApplied Mathematics, 159 (2011), pp. 1189–1195.


[RI74] N. Broutin and J.-F. Marckert, Asymptotic of trees with a prescribed degree sequence and ap-plications, Random Structures and Algorithms, 44 (2014), pp. 290–316.

[RI75] Y. Bu, D. Chen, A. Raspaud, and W. Wang, Injective coloring of planar graphs, Discrete AppliedMathematics, (2009), pp. 663–672.

[RI76] Y. Bu, D. W. Cranston, M. Montassier, A. Raspaud, and W. Wang, Star coloring of sparsegraphs., Journal of Graph Theory, 62 (2009), pp. 201–219.

[RI77] Y. Bu, H. Lu, M. Montassier, A. Raspaud, W. Wang, and Y. Wang, On the 3-colorabilityof planar graphs without 4-, 7- and 9-cycles, Discrete Mathematics, 309 (2009), pp. 4596–4607.

[RI78] Y. Bu, M. Montassier, A. Raspaud, and W. Wang, On backbone coloring of graphs, Journal ofCombinatorial Optimization, 23 (2012), pp. 79–93.

[RI79] J. Chalopin, E. Godard, and Y. Métivier, Election in partially anonymous networks witharbitrary knowledge in message passing systems, Distributed Computing, 25 (2012), pp. 297–311.

[RI80] J. Chalopin and Y. Métivier, On the power of synchronization between two adjacent processes,Distributed Computing, 23 (2010), pp. 177–196.

[RI81] J. Chalopin, Y. Métivier, and T. Morsellino, Enumeration and leader election in partiallyanonymous and multi-hop broadcast networks, Fundamenta Informaticae, 120 (2012), pp. 1–27.

[RI82] G. J. Chang, P. Dorbec, H. K. Kim, A. Raspaud, H. Wang, and W. Zhao, Upper k-tupledomination in graphs, Discrete Mathematics and Theoretical Computer Science, 14 (2012), pp. 285–292.

[RI83] G. J. Chang, P. Dorbec, M. Montassier, and A. Raspaud, Generalized power domination ofgraphs, Discrete Applied Mathematics, 160 (2012), pp. 1691–1698.

[RI84] G. Chapuy, V. Féray, and E. Fusy, A simple model of trees for unicellular maps, Journal ofCombinatorial Theory, Series A, 120 (2013).

[RI85] G. Chapuy, M. Marcus, and G. Schaeffer, A bijection for rooted maps on orientable surfaces,Siam Journal on Discrete Mathematics, 33 (2009), pp. 1587–1611.

[RI86] C. Charpentier, M. Montassier, and A. Raspaud, L(p,q)-labeling of sparse graphs, Journal ofCombinatorial Optimization, (2012), pp. 001–015.

[RI87] M. Chen, M. Montassier, and A. Raspaud, Some structural properties of planar graphs andtheir applications to 3-choosability, Discrete Mathematics, 312 (2012), pp. 362–373.

[RI88] M. Chen and A. Raspaud, Planar graphs without 4, 5 and 8-cycles are acyclically 4-choosable,Electronic Notes in Discrete Mathematics, 34 (2009), pp. 659–667.

[RI89] M. Chen, A. Raspaud, and W. Wang, 8-star-choosability of a graph with maximum average degreeless than 3, Discrete Mathematics and Theoretical Computer Science, 13 (2011), pp. 97–110.

[RI90] R. Cori, Hypermaps and indecomposable permutations, European Journal of Combinatorics, 30(2009), pp. 540–541.

[RI91] R. Cori, Indecomposable permutations, hypermaps and labeled Dyck paths, Journal of CombinatorialTheory(A), 116 (2009), pp. 1326–1343.

[RI92] R. Cori, A. Ayyer, and D. Gouyou-Beauchamps, Monotone triangles and 312 pattern avoid-ance, The Electronic Journal of Combinatorics, 18 (2011).

[RI93] R. Cori, M. Marcus, and G. Schaeffer, Odd permutations are nicer than even ones, EuropeanJournal of Combinatorics, 33 (2012), pp. 1467–1478.


[RI94] R. Cori, J. M. Robson, and C. Mathieu, On the number of indecomposable permutations with agiven number of cycles, The Electronic Journal of Combinatorics, 19 (2012).

[RI95] B. Courcelle, C. Gavoille, and M. M. Kanté, Compact labelings for efficient first-order model-checking, Journal of Combinatorial Optimization, 21 (2011), pp. 19–46.

[RI96] C. Cooper, D. Ilcinkas, R. Klasing, and A. Kosowski, Derandomizing random walks inundirected graphs using locally fair exploration strategies, Distributed Computing, 24 (2011), pp. 91–99.

[RI97] C. Cooper, R. Klasing, and T. Radzik, Locating and repairing faults in a network with mobileagents, Theoretical Computer Science, 411 (2010), pp. 1638–1647.

[RI98] S. Coulonges, A. Pecher, and A. Wagler, Triangle-free strongly circular-perfect graphs, Dis-crete Mathematics, 309 (2009), pp. 3632–3643.

[RI99] S. Coulonges, A. Pêcher, and A. Wagler, Characterizing and bounding the imperfection ratiofor some classes of graphs, Mathematical Programming, Series A, 118 (2009), pp. 37–46.

[RI100] J. Czap, S. Jendrol’, and F. Kardoš, Facial parity edge colouring, Ars Mathematica Contem-poranea, 4 (2011), pp. 255–269.

[RI101] J. Czap, S. Jendrol’, and F. Kardoš, On the strong parity chromatic number, DiscussionesMathematicae Graph Theory, 31 (2011), pp. 587–600.

[RI102] J. Czap, S. Jendrol’, F. Kardoš, and J. Miškuf, Looseness of planar graphs, Graphs andCombinatorics, 27 (2011), pp. 73–85.

[RI103] J. Czap, S. Jendrol’, F. Kardoš, and R. Soták, Facial parity edge colouring of plane pseudo-graphs, Discrete Mathematics, 312 (2012), pp. 2735–2740.

[RI104] J. Czyzowicz, S. Dobrev, L. Gasieniec, D. Ilcinkas, J. Jansson, R. Klasing, I. Lig-nos, R. Martin, K. Sadakane, and W.-K. Sung, More efficient periodic traversal in anonymousundirected graphs, Theoretical Computer Science, 444 (2012).

[RI105] J. Czyzowicz, D. Ilcinkas, A. Labourel, and A. Pelc, Asynchronous deterministic rendezvousin bounded terrains, Theoretical Computer Science, 412 (2011), pp. 6926–6937.

[RI106] J. Czyzowicz, D. Ilcinkas, A. Labourel, and A. Pelc, Worst-case optimal exploration ofterrains with obstacles, Information and Computation, 225 (2013), pp. 16–28.

[RI107] J. Czyzowicz, A. Kosowski, and A. Pelc, How to meet when you forget: log-space rendezvousin arbitrary graphs, Distributed Computing, 25 (2012), pp. 165–178.

[RI108] J. Czyzowicz, A. Kosowski, and A. Pelc, Deterministic rendezvous of asynchronous bounded-memory agents in polygonal terrains, Theory of Computing Systems, 52 (2013), pp. 179–199.

[RI109] J. Czyzowicz, A. Kosowski, and A. Pelc, Time vs. space trade-offs for rendezvous in trees,Distributed Computing, (2013).

[RI110] O. Delmas, S. Gravier, M. Montassier, and A. Parreau, On two variations of identifyingcodes, Discrete Mathematics, 311 (2011), pp. 1948–1956.

[RI111] O. Delmas and A. Raspaud, Preface, Discrete Mathematics, 309 (2009), pp. 3463 – 3464.

[RI112] B. Derbel, M. Mosbah, and A. Zemmari, Sublinear fully distributed partition with applications,Theory of Computing Systems, 47 (2010), pp. 368–404.

[RI113] G. Detorakis and N. Rougier, A neural field model of the somatosensory cortex: Formation,maintenance and reorganization of ordered topographic maps, PLoS ONE, 7 (2012).


[RI114] Y. Dieng and C. Gavoille, Routage compact optimal dans les (k, r)-constellations, Technique etScience Informatiques (TSI), 30 (2011), pp. 485–513.

[RI115] P. Dorbec and S. Gravier, Paired-domination in subdivided star-free graphs, Graphs and Com-binatorics, 26 (2010), pp. 43–49.

[RI116] P. Dorbec, S. Gravier, I. Honkala, and M. Mollard, Weighted codes in lee metric, DesignsCodes and Cryptography / Designs Codes and Cryptography An International Journal, 52 (2009),pp. 209–218.

[RI117] P. Dorbec, B. Hartnell, and M. Henning, Paired versus double domination in k 1,r -freegraphs, Journal of Combinatorial Optimization, 27 (2014), pp. 688–694.

[RI118] P. Dorbec and M. Henning, Upper paired domination in claw-free graphs, Journal of Combina-torial Optimization, 22 (2011), pp. 235–251.

[RI119] P. Dorbec, M. Henning, C. Löwenstein, M. Montassier, and A. Raspaud, Generalizedpower domination in regular graphs, Siam Journal on Discrete Mathematics, 27 (2013), pp. 1559–1574.

[RI120] P. Dorbec, T. Kaiser, M. Montassier, and A. Raspaud, Limits of near-coloring of sparsegraphs, Journal of Graph Theory, 75 (2014), pp. 191–202.

[RI121] P. Dorbec and S. Klavzar, Generalized power domination: propagation radius and sierpinskigraphs, Acta Applicandae Mathematicae, (2014).

[RI122] P. Dorbec, M. Montassier, and P. Ochem, Vertex partitions of graphs into cographs and stars,Journal of Graph Theory, 75 (2013), pp. 75–90.

[RI123] M. Dolega, V. Féray, and P. Sniady, Explicit combinatorial interpretation of Kerov characterpolynomials as numbers of permutation factorizations, Advances in Mathematics, 225 (2010), pp. 81–120.

[RI124] A. Doyon, H. Gena, and A. Raspaud, Some bounds on the injective chromatic number of graphs,Discrete Mathematics, (2009).

[RI125] E. Duchene and G. Renault, Vertex nim played on graphs, Theoretical Computer Science, 516(2014), pp. 20–27.

[RI126] M. Dukes and Y. Le Borgne, Parallelogram polyominoes, the sandpile model on a completebipartite graph, and a q, t-Narayana polynomial, Journal of Combinatorial Theory, Series A, 120 (2013),pp. 816–842.

[RI127] A. El Hibaoui, Y. Métivier, J. M. Robson, N. Saheb-Djahromi, and A. Zemmari, Analysisof a randomized dynamic timetable handshake algorithm, Pure Mathematics and Applications (Algebraand Theoretical Computer Science), (2009).

[RI128] A. El Hibaoui, J. M. Robson, N. Saheb-Djahromi, and A. Zemmari, Uniform election intrees and polyominoids, Discrete Applied Mathematics, (2010), pp. 981–987.

[RI129] R. Erman, F. Kardoš, and J. Miškuf, Long cycles in fullerene graphs, Journal of MathematicalChemistry, 46 (2009), pp. 1103–1111.

[RI130] L. Esperet, S. Gravier, M. Montassier, P. Ochem, and A. Parreau, Locally identifyingcoloring of graphs, The Electronic Journal of Combinatorics, 19 (2012), p. 40.

[RI131] L. Esperet, F. Kardoš, A. King, D. Kráľ, and S. Norine, Exponentially many perfectmatchings in cubic graphs, Advances in Mathematics, 227 (2011), pp. 1646–1664.

[RI132] L. Esperet, F. Kardoš, and D. Kráľ, A superlinear bound on the number of perfect matchingsin cubic bridgeless graphs, European Journal of Combinatorics, 33 (2012), pp. 767–798.


[RI133] L. Esperet, M. Montassier, and X. Zhu, Adapted list colouring of planar graphs, Journal ofGraph Theory, 62 (2009), pp. 127–138.

[RI134] A. Fernandez Anta, A. Milani, M. A. Mosteiro, and S. Zaks, Opportunistic informationdissemination in mobile ad-hoc networks : The profit of global synchrony., Distributed Computing, 25(2012), pp. 279–296.

[RI135] J. Fix, N. P. Rougier, and F. Alexandre, A dynamic neural field approach to the covert andovert deployment of spatial attention, Cognitive Computation, 3 (2011), pp. 279–293.

[RI136] P. Flocchini, D. Ilcinkas, A. Pelc, and N. Santoro, Remembering without memory: Treeexploration by asynchronous oblivious robots, Theoretical Computer Science, 411 (2010), pp. 1583–1598.

[RI137] P. Flocchini, D. Ilcinkas, A. Pelc, and N. Santoro, How many oblivious robots can explorea line, Information Processing Letters, 111 (2011), pp. 1027–1031.

[RI138] P. Flocchini, D. Ilcinkas, A. Pelc, and N. Santoro, Computing without communicating:Ring exploration by asynchronous oblivious robots, Algorithmica, 65 (2013), pp. 562–583.

[RI139] P. Flocchini, D. Ilcinkas, and N. Santoro, Ping pong in dangerous graphs: Optimal blackhole search with pebbles, Algorithmica, 62 (2012).

[RI140] A. Fontaine, Y. Métivier, J. M. Robson, and A. Zemmari, Optimal bit complexity randomiseddistributed mis and maximal matching algorithms for anonymous rings, Information and Computation,233 (2013), pp. 32–40.

[RI141] F. Foucaud, S. Gravier, R. Naserasr, A. Parreau, and P. Valicov, Identifying codes inline graphs, Journal of Graph Theory, 73 (2013), pp. 425–448.

[RI142] F. Foucaud, E. Guerrini, M. Kovse, R. Naserasr, A. Parreau, and P. Valicov, Extremalgraphs for the identifying code problem, European Journal of Combinatorics, 32 (2011), pp. 628–638.

[RI143] F. Foucaud, R. Klasing, A. Kosowski, and A. Raspaud, On the size of identifying codes intriangle-free graphs, Discrete Applied Mathematics, 160 (2012), pp. 1532–1546.

[RI144] F. Foucaud and M. Kovse, Identifying path covers in graphs, Journal of Discrete Algorithms, 23(2013), pp. 21–34.

[RI145] F. Foucaud, R. Naserasr, and A. Parreau, Characterizing extremal digraphs for identifyingcodes and extremal cases of bondy’s theorem on induced subsets, Graphs and Combinatorics, 29 (2013),pp. 463–473.

[RI146] F. V. Fomin, F. Mazoit, and I. Todinca, Computing branchwidth via efficient triangulationsand blocks, Discrete Applied Mathematics, 157 (2009), pp. 2726–2736.

[RI147] P. Fraigniaud, C. Gavoille, D. Ilcinkas, and A. Pelc, Distributed computing with advice:information sensitivity of graph coloring, Distributed Computing, 21 (2009), pp. 395–403.

[RI148] P. Fraigniaud, C. Gavoille, A. Kosowski, E. Lebhar, and Z. Lotker, Universal augmen-tation schemes for network navigability: Overcoming the

√n-barrier, Theoretical Computer Science,

410 (2009), pp. 1970–1981.

[RI149] P. Fraigniaud, D. Ilcinkas, and A. Pelc, Communication algorithms with advice, Journal ofComputer and System Sciences, 76 (2010), pp. 222–232.

[RI150] P. Fraigniaud, S. Rajsbaum, and C. Travers, Locality and checkability in wait-free computing,Distributed Computing, 26 (2013), pp. 223–242.

[RI151] V. Féray, Stanley’s formula for characters of the symmetric group, Annals of Combinatorics, 13(2010), pp. 453–461.


[RI152] V. Féray, On complete functions in Jucys-Murphy elements, Annals of Combinatorics, 16 (2012),pp. 677–707.

[RI153] V. Féray, Partial Jucys-Murphy elements and star factorizations, European Journal of Combina-torics, 33 (2012), pp. 189–198.

[RI154] V. Féray, Asymptotic behavior of some statistics in Ewens random permutations, Electronic Journalof Probability, 18 (2013), pp. 1–32.

[RI155] V. Féray and I. P. Goulden, A multivariate hook formula for labelled trees, Journal of Combi-natorial Theory, Series A, 120 (2013), pp. 944–959.

[RI156] V. Féray and P.-L. Méliot, Asymptotics of q-Plancherel measures, Probability Theory andRelated Fields, 152 (2012), pp. 589–624.

[RI157] V. Féray and V. Reiner, P-partitions revisited, Journal of commutative algebra, 4 (2012),pp. 101–152.

[RI158] V. Féray and P. Sniady, Asymptotics of characters of symmetric groups related to Stanley char-acter formula, Annals of Mathematics, 173 (2011), pp. 887–906.

[RI159] V. Féray and P. Sniady, Zonal polynomials via Stanley’s coordinates and free cumulants, Journalof Algebra, 334 (2011), pp. 338–373.

[RI160] V. Féray and E. A. Vassilieva, Bijective enumeration of some colored permutations given by theproduct of two long cycles, Discrete Mathematics, 312 (2012), pp. 279–292.

[RI161] C. Gavoille, R. Klasing, A. Kosowski, L. Kuszner, and A. Navarra, On the complexityof distributed graph coloring with local minimality constraints, Networks, 54 (2009), pp. 12–19.

[RI162] E. Gafni, A. Mostefaoui, M. Raynal, and C. Travers, From adaptive renaming to setagreement, Theoretical Computer Science, 410 (2009), pp. 1328–1335.

[RI163] F. Gilbert, O. Baudon, and M. Wozniak, Recursively arbitrarily vertex-decomposable suns,Opuscula Mathematica, 31 (2011), pp. 533–547.

[RI164] V. Gramoli and A. Milani, Wttm 2012, the fourth workshop on the theory of transactionalmemory, SIGACT News, 43 (2012), pp. 116–122.

[RI165] S. Gravier, M. Kovse, M. Mollard, J. Moncel, and A. Parreau, New results on variantsof covering codes in sierpinski graphs, Designs, Codes and Cryptography, 69 (2013).

[RI166] A. Guignard and E. Sopena, Compound node-kayles on paths, Theoretical Computer Science,410 (2009), pp. 2033–2044.

[RI167] H. Hocquard, Graphs with maximum degree 6 are acyclically 11-colorable, Information ProcessingLetters, 111(15):748-753, 2011., Volume 111 (2011).

[RI168] H. Hocquard and M. Montassier, Every planar graph without cycles of lengths 4 to 12 isacyclically 3-choosable, Information Processing Letters, (2009).

[RI169] H. Hocquard and M. Montassier, Adjacent vertex-distinguishing edge coloring of graphs withmaximum degree δ, Journal of Combinatorial Optimization, (2012), p. 9.

[RI170] H. Hocquard, M. Montassier, A. Raspaud, and P. Valicov, On strong edge-colouring ofsubcubic graphs, Discrete Applied Mathematics, 161 (2013), pp. 2467–2479.

[RI171] H. Hocquard, P. Ochem, and P. Valicov, Strong edge-colouring and induced matchings, Infor-mation Processing Letters, 113 (2013), pp. 836–843.

[RI172] H. Hocquard and P. Valicov, Strong edge coloring of subcubic graphs, Discrete Applied Math-ematics, 159 (2011), pp. 1650–1657.


[RI173] J. Hromkovič, P. Kanarek, R. Klasing, K. Lorys, W. Unger, and H. Wagener, Onthe size of permutation networks and consequences for efficient simulation of hypercube algorithms onbounded-degree networks, Siam Journal on Discrete Mathematics, 23 (2009), pp. 1612–1645.

[RI174] D. Hudák, F. Kardoš, B. Lužar, R. Soták, and R. Škrekovski, Acyclic edge coloring ofplanar graphs with delta colors, Discrete Applied Mathematics, 160 (2012), pp. 1356–1368.

[RI175] A. Hutt and N. P. Rougier, Activity spread and breathers induced by finite transmission speedsin two-dimensional neural fields, Physical Review E: Statistical, Nonlinear, and Soft Matter Physics,82 (2010).

[RI176] D. Ilcinkas, D. R. Kowalski, and A. Pelc, Fast radio broadcasting with advice, TheoreticalComputer Science, 411 (2010), pp. 1544–1557.

[RI177] D. Ilcinkas, N. Nisse, and D. Soguet, The cost of monotonicity in distributed graph searching,Distributed Computing, 22 (2009), pp. 117–127.

[RI178] C. Johnen, Fast, silent self-stabilizing distance-k independent dominating set construction, Infor-mation Processing Letters, 114 (2014), pp. 551–555.

[RI179] C. Johnen and F. Mekhaldi, Self-stabilizing with service guarantee construction of 1-hop weight-based bounded size clusters, Journal of Parallel and Distributed Computing, 74 (2014), pp. 1900–1913.

[RI180] C. Johnen and L. H. Nguyen, Robust self-stabilizing weight-based clustering algorithm, Theoret-ical Computer Science, 410 (2009), pp. 581–594.

[RI181] C. Joncour and A. Pêcher, Consecutive ones matrices for multi-dimensional orthogonal packingproblems, Journal of Mathematical Modelling and Algorithms, 11 (2012), pp. 23–44.

[RI182] C. Joncour, A. Pêcher, and P. Valicov, Mpq-trees for the orthogonal packing problem, Journalof Mathematical Modelling and Algorithms, 11 (2012), pp. 3–22.

[RI183] F. Kardoš, Fulleroids with dihedral symmetry, Discrete Mathematics, 310 (2010), pp. 652–661.

[RI184] F. Kardoš, J. Katrenič, and I. Schiermeyer, On computing the minimum 3-path vertex coverand dissociation number of graphs, Theoretical Computer Science, 412 (2011), pp. 7009–7017.

[RI185] F. Kardoš, M. Krnc, B. Lužar, and R. Škrekovski, Cyclic 7-edge-cuts in fullerene graphs,Journal of Mathematical Chemistry, 47 (2010), pp. 771–789.

[RI186] F. Kardoš, D. Král’, and J.-S. Sereni, The last fraction of a fractional conjecture, SIAMJournal on Discrete Mathematics, 24 (2010), pp. 699–707.

[RI187] F. Kardoš, D. Kráľ, and J. Volec, Fractional colorings of cubic graphs with large girth, SiamJournal on Discrete Mathematics, 25 (2011), pp. 1454–1476.

[RI188] F. Kardoš, D. Kráľ, and J. Volec, Maximum edge-cuts in cubic graphs with large girth and inrandom cubic graphs, Random Structures and Algorithms, 41 (2012), pp. 506–520.

[RI189] F. Kardoš and J. Miškuf, Maximum vertex and face degree of oblique graphs, Discrete Mathe-matics, 309 (2009), pp. 4942–4948.

[RI190] R. Kassab and F. Alexandre, Incremental data-driven learning of a novelty detection model forone-class classification with application to high-dimensional noisy data, Machine Learning, 74 (2009),pp. 191–234.

[RI191] K. Kabyl, A. Berrachedi, and E. Sopena, A note on the cubical dimension of new classes ofbinary trees, Czechoslovak Mathematical Journal, (2014).

[RI192] O. Khorunzhiy and J.-F. Marckert, Uniform bounds for exponential moment of maximum ofa Dyck paths, Electronic Communications in Probability, 14 (2009), pp. 327–333.


[RI193] R. Klasing, A. Kosowski, and A. Navarra, Cost minimisation in wireless networks with abounded and unbounded number of interfaces, Networks, 53 (2009), pp. 266–275.

[RI194] R. Klasing, A. Kosowski, and A. Navarra, Taking advantage of symmetries: Gathering ofmany asynchronous oblivious robots on a ring, Theoretical Computer Science, 411 (2010), pp. 3235–3246.

[RI195] R. Klasing, Z. Lotker, A. Navarra, and S. Pérennes, From balls and bins to points andvertices, Algorithmic Operations Research, 4 (2009), pp. 133–143.

[RI196] W. F. Klostermeyer, G. Macgillivray, A. Raspaud, and E. Sopena, Bounds for the (m,n)-mixed chromatic number and the oriented chromatic number, Graph Theory Notes of New York, LXV(2013), pp. 10–14.

[RI197] A. Kosowski and A. Navarra, Graph decomposition for memoryless periodic exploration, Algo-rithmica, 63 (2012), pp. 26–38.

[RI198] A. Kosowski, A. Navarra, D. Pajak, and C. Pinotti, Maximum matching in multi-interfacenetworks, Theoretical Computer Science, 507 (2013), pp. 52–60.

[RI199] A. Kosowski, A. Navarra, and C. Pinotti, Synchronous black hole search in directed graphs,Theoretical Computer Science, 412 (2011), pp. 5752–5759.

[RI200] D. Kral, E. Macajova, O. Pangrac, A. Raspaud, J.-S. Sereni, and M. Skoviera, Pro-jective, affine, and abelian colorings of cubic graphs, European Journal of Combinatorics, 30 (2009),pp. 53–69.

[RI201] Y. Le Borgne, L. Lapointe, and P. Nadeau, A normalization formula for the Jack polynomialsin superspace and an identity on partitions, The Electronic Journal of Combinatorics, 16 (2009).

[RI202] L. Lyaudet, F. Mazoit, and S. Thomassé, Partitions versus sets : a case of duality, EuropeanJournal of Combinatorics, (2009), pp. 1–7.

[RI203] J.-F. Marckert, Directed animals, quadratic and rewriting systems, The Electronic Journal ofCombinatorics, 19 (2012).

[RI204] J.-F. Marckert and N. Bonichon, Asymptotics of geometrical navigation on a random set ofpoints of the plane, Advances in Applied Probability, 43 (2011), pp. 899–942.

[RI205] J.-F. Marckert and O. Khorunzhiy, Uniform bounds for the exponential moments of the max-imum of Dyck paths, Electronic Communications in Probability, 14 (2009), pp. 327–333.

[RI206] J.-F. Marckert and G. Miermont, The CRT is the scaling limit of unordered binary trees,Random Structures and Algorithms, 38 (2011), pp. 467–501.

[RI207] J.-F. Marckert, M. Reitzner, and I. Barany, Many empty triangles have a common edge,Discrete and Computational Geometry, 50 (2013), pp. 244–252.

[RI208] J.-F. Marckert, T. Selig, and Y.-B. Chan, A natural stochastic extension of the sandpilemodel on a graph, Journal of Combinatorial Theory, Series A, 120 (2013), pp. 1913–1928.

[RI209] F. Mazoit, Tree-width of hypergraphs and surface duality, Journal of Combinatorial Theory, SeriesB, 102 (2010), pp. 671–687.

[RI210] A. Maggi, C. Tape, M. Chen, D. Chao, and J. Tromp, An automated data-window selectionalgorithm for adjoint tomography, Geophysical Journal International, 178 (2009), pp. 257–281.

[RI211] R. Milley and G. Renault, Dead ends in misere play: The misere monoid of canonical numbers,Discrete Mathematics, 313 (2013), pp. 2223–2231.


[RI212] M. Montassier, P. Ossona De Mendez, A. Raspaud, and X. Zhu, Decomposing a graph intoforests, Journal of Combinatorial Theory, Series B, 102 (2012), pp. 38–52.

[RI213] M. Montassier, A. Raspaud, and X. Zhu, An upper bound on the adaptable choosability ofgraphs., European Journal of Combinatorics, 30 (2009), pp. 351–355.

[RI214] A. Montejano, P. Ochem, A. Pinlou, A. Raspaud, and E. Sopena, Homomorphisms of2-edge-colored graphs, Discrete Applied Mathematics, 158 (2010), pp. 1365–1379.

[RI215] A. Mostefaoui, M. Raynal, and C. Travers, Narrowing power vs efficiency in synchronousset agreement: Relationship, algorithms and lower bound, Theoretical Computer Science, 411 (2010),pp. 58–69.

[RI216] Y. Métivier, J. Robson, N. Saheb-Djahromi, and A. Zemmari, On the time and the bitcomplexity of distributed randomised anonymous ring colouring, Theoretical Computer Science, 502(2013), pp. 64–75.

[RI217] Y. Métivier, J. M. Robson, N. Saheb-Djahromi, and A. Zemmari, About randomised dis-tributed graph colouring and graph partition algorithms, Information and Computation, 208 (2010),pp. 1296–1304.

[RI218] Y. Métivier, J. M. Robson, N. Saheb-Djahromi, and A. Zemmari, About randomised dis-tributed graph colouring and graph partition algorithms, Information and Computation, 208 (2010),pp. 1296–1304.

[RI219] Y. Métivier, J. M. Robson, N. Saheb-Djahromi, and A. Zemmari, An optimal bit complexityrandomised distributed mis algorithm, Distributed Computing, 23 (2011), pp. 331–340.

[RI220] R. Naserasr, E. Rollova, and E. Sopena, Homomorphisms of planar signed graphs to signedprojective cubes, Discrete Mathematics and Theoretical Computer Science, 15 (2013), pp. 1–12.

[RI221] R. Naserasr, E. Rollova, and E. Sopena, Homomorphisms of signed graphs, Journal of GraphTheory, (2014).

[RI222] R. J. Nowakowski, G. Renault, E. Lamoureux, S. Mellon, and T. Miller, The game oftimber!, Journal of Combinatorial Mathematics and Combinatorial Computing, 85 (2013), pp. 213–225.

[RI223] N. Ouled Abdallah, H. Hadj Kacem, M. Mosbah, and A. Zemmari, Randomized broadcast-ing in wireless mobile sensor networks, Concurrency and Computation: Practice and Experience, 25(2013), pp. 203–217.

[RI224] F. Pakovich, C. Pech, and A. Zvonkine, Laurent polynomial moment problem : a case study,Contemporary Mathematics, 532 (2010), pp. 177–194.

[RI225] F. Pakovich and A. Zvonkine, Minimum degree of the difference of two polynomials over q, andweighted plane trees, Selecta Mathematica (New Series), (2014), pp. 1–63.

[RI226] P. R. Parvédy, M. Raynal, and C. Travers, Strongly terminating early-stopping ıt k-set agree-ment in synchronous systems with general omission failures, Theory Comput. Syst., 47 (2010), pp. 259–287.

[RI227] A. Pêcher, C. Bachoc, and A. Thiery, On the theta number of powers of cycle graphs, Com-binatorica, 33 (2013), pp. 297–317.

[RI228] A. Pêcher, G. J. Chang, M. Montassier, and A. Raspaud, Strong chromatic index of planargraphs with large girth, Discussiones Mathematicae Graph Theory, (2014).

[RI229] A. Pêcher and A. Wagler, On facets of stable set polytopes of claw-free graphs with stabilitynumber three, Discrete Mathematics, 310 (2010), pp. 493–498.


[RI230] A. Pêcher and A. Wagler, Polynomial time computability of some graph parameters for su-perclasses of perfect graphs, International Journal of Mathematics in Operational Research, 4 (2012),pp. 263–275.

[RI231] A. Pêcher and A. Wagler, Computing clique and chromatic number of circular-perfect graphsin polynomial time, Mathematical Programming A, 141 (2013), pp. 121–133.

[RI232] A. Pêcher and A. Wagler, Computing the clique number of a-perfect graphs in polynomial time,European Journal of Combinatorics, 35 (2014), pp. 449–458.

[RI233] A. Raspaud, H. Schroder, O. Sykora, L. Torok, and I. Vrto, Antibandwidth and cyclicantibandwidth of meshes and hypercubes, Discrete Mathematics, (2009), pp. 3541–3552.

[RI234] A. Raspaud and J. Wu, Game chromatic number of toroidal grids, Electronic Notes in DiscreteMathematics, 34 (2009), pp. 381–385.

[RI235] D. Renault and J.-F. Marckert, Compact convex sets of the plane and probability theory,ESAIM: Probability and Statistics, (2014), p. 34.

[RI236] N. Rougier, Higher quality 2d text rendering, Journal of Computer Graphics Techniques, 2 (2013),pp. 50–64.

[RI237] N. Rougier, Shader-based antialiased dashed stroked polylines, Journal of Computer Graphics Tech-niques, 2 (2013), pp. 91–107.

[RI238] N. Rougier and J. Fix, Dana: Distributed (asynchronous) numerical and adaptive modellingframework, Network: Computation in Neural Systems, 23 (2012), pp. 237–253.

[RI239] N. P. Rougier, Implicit and explicit representations, Neural Networks, 22 (2009), pp. 155–160.

[RI240] N. P. Rougier and Y. Boniface, Dynamic self-organising map, Neurocomputing, 74 (2011),pp. 1840–1847.

[RI241] N. P. Rougier and A. Hutt, Synchronous and asynchronous evaluation of dynamic neural fields,The Journal of Difference Equations and Applications, In press (2010).

[RI242] B. Seamone and B. Stevens, Sequence variations of the 1-2-3 conjecture and irregularity strength,Discrete Mathematics and Theoretical Computer Science, 15 (2013), pp. 15–28.

[RI243] S. Sen, L(2, 1)-labelings of some families of oriented planar graphs, Discussiones MathematicaeGraph Theory, (2014), pp. 31–48.

[RI244] E. Sopena, Upper oriented chromatic number of undirected graphs and oriented colorings of productgraphs, Discussiones Mathematicae Graph Theory, 32 (2012), pp. 517–533.

[RI245] E. Sopena, Complete oriented colourings and the oriented achromatic number, Discrete AppliedMathematics, 173 (2014), pp. 102–112.

[RI246] E. Sopena and J. Wu, Coloring the square of the cartesian product of two cycles, Discrete Math-ematics, 310 (2010), pp. 2327–2333.

[RI247] E. Sopena and J. Wu, The incidence chromatic number of toroidal grids, Discussiones Mathe-maticae Graph Theory, 33 (2013), pp. 315–327.

[RI248] W. Taouali, T. Vieville, N. P. Rougier, and F. Alexandre, No clock to rule them all,Journal of Physiology - Paris, 105 (2011), pp. 83–90.

[RI249] A. Wade, Exploration des graphes dynamiques t-intervalle-connexes, Colloque National sur laRecherche en Informatique et ses Applications (CNRIA), 5 (2013), pp. 78–85.

[RI250] A. Zvonkine, Functional composition is a generalized symmetry, Symmetry : Culture and Science,22 (2011), pp. 391–426.


Peer-reviewed journals (national)

[RN1] X. G. Viennot, Des arbres dans les étoiles, des arbres dans les grains de lumière, Tangente, (2009),pp. 44–47.

Contributed volumes (national)

[ON1] T. Le Goff, F. Dugeny, S. Scherer, C. Loudier-Malgouyres, G. Franc, A. Wyvekens,V. Malochet, C. Mouhanna, N. Comte, and M. Marcus, Les villes face à l’insécurité. Actes dela table ronde du 25 octobre 2010, IAU-IDF, 2011.

[ON2] A. Zvonkine and S. Lando, Graphes sur les surfaces et leurs applications, Centre d’éducationcontinue en mathématiques de Moscou, 2010.

Chapters in contributed volumes (international)

[CHI1] V. Andova, F. Kardoš, and R. Škrekovski, Fullerene graphs and some relevant graph invari-ants, in Topics in Chemical Graph Theory, I. Gutman, ed., University of Kragujevac and Faculty ofScience Kragujevac, 2014, pp. 39–54.

[CHI2] O. Beaumont and L. Marchal, Steady-state scheduling, in Introduction To Scheduling, Y. Robertand F. Vivien, eds., Taylor and Francis, 2009.

[CHI3] N. Bonichon, C. Gavoille, and N. Hanusse, An information-theoretic upper bound on planargraphs using well-orderly maps, in Towards an Information Theory of Complex Networks, M. Dehmer,F. Emmert-Streib, and A. Mehler, eds., Birkhäuser Boston, 2011, pp. 17–46.

[CHI4] M. Bousquet-Mélou and R. Brak, Exactly solved models of polyominoes and polygons, in Poly-gons, Polyominoes and Polycubes, Springer Berlin / Heidelberg, 2009, pp. 43–78.

[CHI5] V. Bonifaci, R. Klasing, P. Korteweg, L. Stougie, and A. Marchetti-Spaccamela, Datagathering in wireless networks, in Graphs and Algorithms in Communication Networks, A. Koster andX. Munoz, eds., Springer-Verlag, 2010, pp. 357–377.

[CHI6] I. Caragiannis, M. Flammini, C. Kaklamanis, R. Klasing, and A. Navarra, Energy con-sumption minimization in ad hoc wireless and multi-interface networks, in Graphs and Algorithms inCommunication Networks, A. Koster and X. Munoz, eds., Springer-Verlag, 2010, pp. 335–355.

[CHI7] L. Eyraud-Dubois and A. Legrand, The impact of platform models on scheduling techniques, inIntroduction to Scheduling, Y. Robert and F. Vivien, eds., Taylor and Francis, 2009.

[CHI8] C. Gavoille, B. Patt-Shamir, and C. Scheideler, Special issue: Parallelism on algorithmsand architectures (spaa ’07), in Theory of Computing Systems, Springer, 2010, pp. 809–962.

[CHI9] A. Hutt and N. P. Rougier, Numerical simulation scheme of one-and two-dimensional neuralfields involving space-dependent delays, in Neural Field Theory, P. B. Graben, S. Coombes, R. Potthast,and J. Wright, eds., Springer, 2014.

[CHI10] S. Jendrol’ and F. Kardoš, Symmetry of fulleroids, in Handbook of Nanophysics: Clusters andFullerenes, K. D. Sattler, ed., CRC Press, 2010, pp. 28–1 – 28–13.

[CHI11] A. Pêcher and A. Wagler, Beyond perfection: Computational results for superclasses, in Facetsof Combinatorial Optimization - Festschrift for Martin Grötschel, M. Jünger and G. Reinelt, eds.,Springer, 2013, pp. 133–161.

[CHI12] W. Taouali, N. Rougier, and F. Alexandre, Visual target selection emerges from a bio-inspired network topology, in Studies in Computational Intelligence, J. Kacprzyk, ed., Springer Verlag,2012.

BIBLIOGRAPHY 191

[CHI13] V. Vèque, F. Kaisser, C. Johnen, and A. Busson, Convoy: a new cluster-based routing pro-tocol for vehicular networks, in Models and algorithms for vehicular networks, H. Labiod and A. Beylot,eds., ISTE Publishing Knowledge /John Wiley and Sons Inc, 2013, pp. 91–102.

Chapters in contributed volumes (national)

[CHN1] F. Alexandre, Une approche systémique du réseau cérébral, in Les Réseaux, E. Letonturier, ed.,CNRS Editions, 2012, pp. 129–140.

[CHN2] V. Vèque, F. Kaisser, C. Johnen, and A. Busson, Convoi : un protocole de formation declusters pour les réseaux de véhicules, in Modèles et algorithmes pour les réseaux véhiculaires, H. Labiodand A. Beylot, eds., Hermès, 2013, pp. 1–15.

Editors of contributed volumes (international)

[DI1] S. Abramski, C. Gavoille, C. Kirchner, F. Meyer auf der Heide, and P. G. Spirakis,Proceedings of the 37th International Colloquium on Automata, Languages and Programming, ICALP2010, Bordeaux, France, July 6-10, 2010, Part I & II. Volume 6198 & 6199 of Lecture Notes in ComputerScience (ARCoSS), Springer, 2010.

[DI2] O. Delmas and A. Raspaud, 7th International Colloquium on Graph Theory - ICGT 05, DiscreteMathematics - Volume 309, Issue 11, Pages 3463-3732 - Elsevier B.V., 2009.

[DI3] P. Fraigniaud and C. Gavoille, Proceedings of the 30th Annual ACM Symposium on Principlesof Distributed Computing (PODC), San Jose, CA, USA, ACM Press, 2011.

[DI4] R. Klasing, Experimental Algorithms - 11th International Symposium, SEA 2012, Bordeaux, France,June 7-9, 2012. Proceedings, Springer Verlag, 2012.

[DI5] A. Kosowski and M. Yamashita, Structural Information and Communication Complexity. 18thInternational Colloquium, SIROCCO 2011, Gdańsk, Poland, June 26-29, 2011, vol. 6796, Springer,2011.

Invited conference talks (international)

[II1] F. Alexandre, Modeling thalamocortical loops, in French-Chinese workshop in Computational Neu-roscience, 2012.

[II2] F. Alexandre, A computational model of the amygdala revisits pavlovian learning, in Sino-FrenchInternational Workshop on Computational Neuroscience, 2014.

[II3] M. Bousquet-Mélou, The expected inversion number after n adjacent transpositions, in Aurora bo-realis combinatorics, 2010.

[II4] M. Bousquet-Mélou, Sur les chemins auto-évitants, in Journées MAS, (Modélisation Aléatoire etStatistique), 2010.

[II5] M. Bousquet-Mélou, Counting planar maps, coloured or uncoloured, in Surveys in combinatorics2011, vol. 392 of London Math. Soc. Lecture Note Ser, 2011, pp. 1–50.

[II6] M. Bousquet-Mélou, Enumeration with catalytic parameters (3 exposés), in Séminaire Lotharingiende Combinatoire, 2011.

[II7] M. Bousquet-Mélou, Lattice paths everywhere, in Philippe Flajolet and Analytic Combinatorics,2011.

[II8] M. Bousquet-Mélou, The Potts model on planar maps, in Stochastic analysis, 2011.

[II9] M. Bousquet-Mélou, Exactly solvable models of self-avoiding walks, in Program ’Random spatialprocesses’, Atelier ’Connections for Women’, 2012.


[II10] M. Bousquet-Mélou, Intervals in the m-Tamari lattices, in Aurora borealis combinatorics, 2012.

[II11] M. Bousquet-Mélou, The number of inversions after n adjacent transpositions, in Algorithms andPermutations, 2012.

[II12] M. Bousquet-Mélou, Philippe Flajolet, founder of analytic combinatorics, in Program ’Randomspatial processes’, Atelier ’Lattice Models and Combinatorics’, 2012.

[II13] M. Bousquet-Mélou, Asymptotic properties of some minor-closed classes of graphs, in WinterCombinatorics Meeting, 2013.

[II14] M. Bousquet-Mélou, The critical fugacity for surface adsorption of self-avoiding walks on thehoneycomb lattice is 1 +

√2, in Workshop on random polymers, 2013.

[II15] M. Bousquet-Mélou, On two-dimensional self-avoiding walks, in Formal power series and algebraiccombinatorics, 2013.

[II16] M. Bousquet-Mélou, Spanning forests in regular planar maps, in Workshop on CombinatorialPhysics, 2013.

[II17] M. Bousquet-Mélou, Two-dimensional self-avoiding walks, in Autumn school "ALEA in Europe",2013.

[II18] R. Cori, A combinatorial game on graphs allowing to visit some chapters of algebra in an elementaryway, in Colloque de Mathématiques, 2013.

[II19] R. Cori, Dyck paths and the rank in complete graphs, in Labyrinth Day, 2014.

[II20] C. Gavoille, Dynamic algorithms via forbidden-set labeling, in First International Workshop onDynamic Systems (DYNAM), 2011.

[II21] C. Gavoille, Progress and challenges for labeling schemes, in First International Workshop on Ad-vances in Distributed Graph Algorithms (ADGA), 2012.

[II22] C. Gavoille, Labeling schemes with forbidden-sets, in 20th International Colloquium on StructuralInformation & Communication Complexity (SIROCCO), vol. 8179 of Lecture Notes in Computer Sci-ence, Springer, 2013.

[II23] R. Klasing, Derandomizing random walks in undirected graphs using locally fair exploration strate-gies, in Workshop on "Dynamic Communication Networks", 2009.

[II24] R. Klasing, Cost minimization in multi-interface networks, in SNOW - 2nd Nordic Workshop on,System and Network Optimization for Wireless, 2011.

[II25] R. Klasing, Efficient exploration of anonymous undirected graphs, in IWOCA - 24th InternationalWorkshop on Combinatorial Algorithms, 2013.

[II26] R. Klasing, The multi-agent rotor-router on the ring: A deterministic alternative to parallel randomwalks, in MAC - Workshop on Distributed Computing by Mobile Robots, 2013.

[II27] R. Klasing, Tutoriel : "mobile agent computing", in ROADEF - 15ème congrès annuel de la Sociétéfrançaise de recherche opérationnelle et d’aide à la décision, 2014.

[II28] M. Montassier, The 3-color problem, in 2009 Workshop on Graph Theory, 2009.

[II29] M. Montassier, Limits of near-coloring of sparse graphs, in 2012 International Conference on GraphTheory, Combinatorics and Applications, 2012.

[II30] A. Pêcher, Circular-clique polytopes and circular-perfect graphs, in 2009 Workshop on Graph Theory,2009.


[II31] A. Pêcher, On the lovasz’s theta function of power of chordless cycles, in 2010 International Con-ference on Graph Theory, Combinatorics and Applications, 2010.

[II32] A. Pêcher, The circular chromatic number of circular-perfect graphs is polytime, in 2011 Workshopon Graph Theory, 2011.

[II33] A. Pêcher, How unique is lovasz’s theta function?,, in 2012 International Conference on GraphTheory, Combinatorics and Applications, 2012.

[II34] A. Pêcher, Interval graphs for orthogonal packing problems, in International Conference in DiscreteMathematics, 2013.

[II35] N. Rougier, Cortical plasticity: A computational approach, in 6th Workshop of the ComputationalNeuroscience Network, 2014.

[II36] E. Sopena, Homomorphisms of signed graphs, in Colourings, Independence and Domination 15thWORKSHOP ON GRAPH THEORY, 2013.

[II37] X. G. Viennot, At the crossroad of algebra, combinatorics and physics: a story of the mysterious andubiquitous sequence 1, 2, 7, 42, 429, ..., in Colloquium Mathematics CIUL, Complexo InterdisciplinarUniversidade de Lisboa, 2009.

[II38] X. G. Viennot, Combinatorial aspects of continued fractions and applications, in colloque PFAC"Philippe Flajolet and analytic combinatorics", 2011.

[II39] X. G. Viennot, The beauty of mathematics, in Conférence spéciale pour les élèves du "Pope John-PaulII College of Education" Pondicherry, 2012.

[II40] X. G. Viennot, Combinatorial operators and quadratic algebra, in Colloquium IMSc, Institute ofMathematical Science, Chennai, 2012.

[II41] X. G. Viennot, Combinatorics of orthogonal polynomials and exclusion processes in physics, inconference ICTS-TIFR "Random matrix theory and applications", 2012.

[II42] X. G. Viennot, The combinatorics of some exclusion model in physics, in Colloquium de physique,IIT Madras (Indian Institute of Technnology), 2012.

[II43] X. G. Viennot, Quadratic algebra, combinatorial physics and planar automata, in séminaire, ChennaiMathematical Institute (CMI), 2012.

[II44] X. G. Viennot, 3n, in Colloquium de Physique Théorique, TIFR (Tata Institute of FundamentalResearch) Bombay, 2013.

[II45] X. G. Viennot, Canopy of binary trees and intervals in associahedra, in Workshop "Recent trendsin Algebraic Combinatorics and Geometric Combinatorics", ICMAT, Cantoblanco Campus, 2013.

[II46] X. G. Viennot, Canopy of binary trees and intervals in associahedra, in Instituto Coloquio, de laUniversidad de Talca, 2013.

[II47] X. G. Viennot, The combinatorics of some exclusion model in physics, in colloquium université LaSpienza, 2013.

[II48] X. G. Viennot, From automata to RSK correspondance, in Journées Christophe Reutenauer, "Words,Codes and Algebraic Combinatorics", 2013.

[II49] X. G. Viennot, Quadratic algebra, combinatorial physics and planar automata, in Random Interac-tions seminar, TIFR (Tata institute of Fundamental Research) Bombay, 2013.

[II50] X. G. Viennot, The Strahler analysis of binary trees in computer science and in other sciences, inColloquium d’Informatique, IIT Bombay (Indian Institute of Mathematics), 2013.


[II51] X. G. Viennot, The Strahler analysis of binary trees in computer science and in other sciences, inComputer science seminar, TIFR (Tata Institute of Fundamental Research) Bombay, 2013.

[II52] X. G. Viennot, Trees in various sciences, in Institute Colloquium, IIT Bombay (Indian Institute ofTehnology), 2013.

[II53] X. G. Viennot, At the crossroad of algebra, combinatorics, probabilities and physics: a toy exclusionmodel, in Mathematisches Kolloquium, Universität Wien, 2014.

[II54] X. G. Viennot, Heaps of pieces and 2d lorentzian quantum gravity, in Workshop on "2D quantumgravity and statistical mechanics, Erwin Schrödinger Institute, 2014.

[II55] X. G. Viennot, Tamari lattice, m-Tamari, (a, b)-Tamari and beyond, in Enumerative Combinatorics,2014.

[II56] X. G. Viennot, C. Krattenthaler (piano), G. Duchamp (violon), and M. Pig La-gos (textes, Poèmes), Des arbres dans les étoiles, des arbres dans les grains de lumière, in Cyclede conférences "Les mathématiques: fascinantes et omniprésentes", Salon rouge, Institut français deVienne, 2014.

[II57] X. G. Viennot and M. Pig Lagos (textes, Poèmes), Árboles in la estrellas, Árboles in los granosde luz (le belleza matemática de los árboles), in "Conferencia, Musica, Poesia" au Centre Culturel, SalónAbate, Univeridad Talca, Chili, 2013.

[II58] A. Zvonkine, Fonctions de Belyi : exemples, propriétés et applications, in Journées de GéométrieAlgorithmique, 2010.

[II59] A. Zvonkine, Theory of dessins d’enfants, in Master-class: around Thurston-Grothendieck-Teichmüller theories, 2014.

Invited conference talks (national)

[IN1] M. Bousquet-Mélou, Permutations sans longue sous-suite croissante : aspects combinatoires, inALEA, 2009.

[IN2] M. Bousquet-Mélou, Chemins dans un quart de plan, in ALEA, 2011.

[IN3] M. Bousquet-Mélou, Le modèle de Potts sur les cartes planaires, in Journées de Combinatoire deBordeaux, 2012.

[IN4] M. Bousquet-Mélou, Familles de graphes à mineurs exclus : une introduction à la combinatoireénumérative et analytique, in Forum des jeunes mathématicien-ne-s, 2013.

[IN5] C. Gavoille, Oracles pour les arbres et les graphes, in 10 ans du séminaire MaMux - Mathématiques,musique et relations avec d’autres disciplines, 2011.

[IN6] N. Rougier, Le rôle des corps dans la cognition humaine, in Forum des Sciences Cognitives, 2014.

[IN7] X. G. Viennot, Au carrefour de l’algèbre, la combinatoire et la physique: une petite histoire de lamystérieuse suite 1, 2, 7, 42, 429, ..., in Colloquium Mathématiques, Université de Lyon, 2009.

[IN8] X. G. Viennot, The cellular ansatz, in Séminaire Algo, INRIA Rocquencourt, 2009.

[IN9] X. G. Viennot, Des arbres dans les étoiles, des arbres dans les grains de lumière, in Fête à Fermat,2009.

[IN10] X. G. Viennot, Des cartes, des permutations, des bijections, des fractions continues: old and new.,in Journées Robert Cori, 2009.

BIBLIOGRAPHY 195

[IN11] X. G. Viennot, Les nouvelles mathématiques combinatoires: renaissance ou révolution ?, in Con-férences de vulgarisation scientifique au Lycée de Quimper, Prépas Scientifiques Brizeux, Ouverture aumonde des sciences, 2011.

[IN12] X. G. Viennot, Physique combinatoire et algèbres quadratiques, in Colloquium de Mathématiquesde l’Université de Nice, 2011.

[IN13] X. G. Viennot, Algèbres d’opérateurs et physique combinatoire, in Colloquium de l’Institut deMathématiques de Jussieu, 2012.

[IN14] X. G. Viennot, The combinatorics of some exclusion model in physics, in Séminaire de la FédérationPhysStat-Sud/Orsay/Saclay/X, 2012.

[IN15] X. G. Viennot, La magie des tableaux de Young, in Jounées nationales de l’APMEP, 2013.

[IN16] X. G. Viennot, Les nombres de Catalan et les preuves sans mots, in Journées nationales del’APMEP, 2013.

[IN17] X. G. Viennot, Couplages dans les graphes, in Jounées jeunes chercheurs lycéens 2014, 2014.

[IN18] X. G. Viennot and G. Duchamp (violon), Des preuves sans mots, in conférence de cloture desjournées nationales de l’APMEP, 2012.

[IN19] X. G. Viennot and G. Duchamp (violon), Pavages, formules magiques et preuves sans mots, inJounée Trophées Kangourou, 2014.

[IN20] X. G. Viennot, G. Duchamp (violon), and M. Pig Lagos (textes, Poèmes), Des arbresdans les étoiles, des arbres dans les grains de lumière, in Conférence grand public à Nancy, cycle deconférences "Science et Société", 2013.

Conferences with published proceedings (international)

[CI1] S. Abbas, M. Mosbah, and A. Zemmari, A generic distributed algorithm for computing by randommobile agents, in Proceedings PRIMA, vol. 5044 of Lecture Notes in Artificial Intelligence, Springer,2009, pp. 392–397.

[CI2] I. Abraham, S. Chechik, and C. Gavoille, Fully dynamic approximate distance oracles for planargraphs via forbidden-set distance labels, in 44th Annual ACM Symposium on Theory of Computing(STOC), ACM, ed., 2012, pp. 1199–1217.

[CI3] I. Abraham, S. Chechik, C. Gavoille, and D. Peleg, Forbidden-set distance labels for graphs ofbounded doubling dimension, in 29th Annual ACM Symposium on Principles of Distributed Computing(PODC), ACM Press, 2010, pp. 192–200.

[CI4] I. Abraham and C. Gavoille, On approximate distance labels and routing schemes with affinestretch, in 25th International Symposium on Distributed Computing (DISC), vol. 6950 of LectureNotes in Computer Science (ARCoSS), Springer, 2011, pp. 404–415.

[CI5] I. Abraham, C. Gavoille, A. Gupta, O. Neiman, and K. Talwar, Cops, robbers, and threateningskeletons: Padded decomposition for minor-free graphs, in 46th Annual ACM Symposium on Theoryof Computing (STOC), ACM Press, 2014, pp. 79–88.

[CI6] C. Aguerre, T. Morsellino, and M. Mosbah, Debugging the execution of distributed algorithmsover anonymous networks, in Proceedings of the International Conference on Information Visualisation,2012, pp. 464–470.

[CI7] C. Aguerre, T. Morsellino, and M. Mosbah, Fully-distributed debugging and visualization ofdistributed systems in anonymous networks, in Proceedings of the International Conference on In-formation Visualization Theory and Applications, R. S. L. P. Richard, M. Kraus and J. Braz, eds.,INSTICC, 2012, pp. 764–767.


[CI8] F. Alexandre, Usefulness of emotions in robots, in International Society for Research on EmotionConference, 2009.

[CI9] M. Albert and M. Bousquet-Mélou, Permutations sortable by two stacks in parallel and quar-ter plane walks (conference version), in Formal power series and algebraic combinatorics 2014, 2014,pp. 51–62.

[CI10] M. H. Albert and M. Bouvel, Operators of equivalent sorting power and related wilf-equivalences,in Discrete Mathematics & Theoretical Computer Science (DMTCS), vol. AS, 2013, pp. 671–682.

[CI11] D. Alistarh, H. Attiya, R. Guerraoui, and C. Travers, Early deciding synchronous renamingin o( logf ) rounds or less, in SIROCCO, G. Even and M. M. Halldórsson, eds., vol. 7355 of LectureNotes in Computer Science, Springer, 2012, pp. 195–206.

[CI12] D. Alistarh, S. Gilbert, R. Guerraoui, and C. Travers, Of choices, failures and asynchrony:The many faces of set agreement, in ISAAC, Y. Dong, D.-Z. Du, and O. H. Ibarra, eds., vol. 5878 ofLecture Notes in Computer Science, Springer, 2009, pp. 943–953.

[CI13] D. Alistarh, S. Gilbert, R. Guerraoui, and C. Travers, Generating fast indulgent algorithms,in ICDCN, M. K. Aguilera, H. Yu, N. H. Vaidya, V. Srinivasan, and R. R. Choudhury, eds., vol. 6522of Lecture Notes in Computer Science, Springer, 2011, pp. 41–52.

[CI14] A. F. Anta, A. Milani, M. A. Mosteiro, and S. Zaks, Opportunistic information disseminationin mobile ad-hoc networks: The profit of global synchrony, in DISC, N. A. Lynch and A. A. Shvartsman,eds., vol. 6343 of Lecture Notes in Computer Science, Springer, 2010, pp. 374–388.

[CI15] I. Atsonios, O. Beaumont, N. Hanusse, and Y. Kim, On power-law distributed balls in bins andits applications to view size estimation, in ISAAC, 2011.

[CI16] H. Attiya, V. Gramoli, and A. Milani, A provably starvation-free distributed directory protocol,in SSS, S. Dolev, J. A. Cobb, M. J. Fischer, and M. Yung, eds., vol. 6366 of Lecture Notes in ComputerScience, Springer, 2010, pp. 405–419.

[CI17] H. Attiya, E. Hillel, and A. Milani, Inherent limitations on disjoint-access parallel implemen-tations of transactional memory, in SPAA, F. Meyer auf der Heide and M. A. Bender, eds., ACM,2009, pp. 69–78.

[CI18] H. Attiya and A. Milani, Transactional scheduling for read-dominated workloads, in OPODIS,T. F. Abdelzaher, M. Raynal, and N. Santoro, eds., vol. 5923 of Lecture Notes in Computer Science,Springer, 2009, pp. 3–17.

[CI19] J.-C. Aval, A. Boussicault, M. Bouvel, and M. Silimbani, Combinatorics of non-ambiguoustrees, in Discrete Mathematics & Theoretical Computer Science (DMTCS), vol. AS, 2013, pp. 49–60.

[CI20] J.-C. Aval and P. Duchon, Enumeration of alternating sign matrices of even size (quasi-)invariantunder a quarter-turn rotation, in 21th Annual International Conference on Formal Power Series andAlgebraic Combinatorics (FPSAC 2009), DMTCS proceedings, 2009.

[CI21] J.-C. Aval, Y. Le Borgne, M. D’Adderio, M. Dukes, and A. Hicks, A q, t-analogue of theNarayana numbers, in FPSAC 2013, 2013, pp. 623–634.

[CI22] J.-C. Aval, J.-C. Novelli, and J.-Y. Thibon, The # product in combinatorial Hopf algebras, in23rd International Conference on Formal Power Series and Algebraic Combinatorics, DMTCS, 2011,pp. 75–86.

[CI23] A. Bacher, Directed and multi-directed animals on the king’s lattice, in The Seventh EuropeanConference on Combinatorics, Graph Theory and Applications, vol. 16, 2013.

[CI24] A. Bacher and M. Bousquet-Mélou, Weakly directed self-avoiding walks (conference version),in Formal power series and algebraic combinatorics 2010, DMTCS Proceedings, 2010.


[CI25] E. Bampas, D. Bilò, G. Drovandi, L. Gualà, R. Klasing, and G. Proietti, Network ver-ification via routing table queries, in Proceedings of the 18th International Colloquium on StructuralInformation and Communication Complexity, vol. 6796 of Lecture Notes in Computer Science, 2011,pp. 270–281.

[CI26] E. Bampas, J. Czyzowicz, L. Gasieniec, D. Ilcinkas, and A. Labourel, Almost optimalasynchronous rendezvous in infinite multidimensional grids, in Proceedings of the 24th InternationalSymposium on Distributed Computing, vol. 6343 of Lecture Notes in Computer Science, SpringerBerlin / Heidelberg, 2010, pp. 297–311.

[CI27] E. Bampas, L. Gasieniec, N. Hanusse, D. Ilcinkas, R. Klasing, and A. Kosowski, Eulertour lock-in problem in the rotor-router model, in Proceedings of the 23rd International Symposium onDistributed Computing, vol. 5805 of Lecture Notes in Computer Science, Springer Berlin / Heidelberg,2009, pp. 421–433.

[CI28] E. Bampas, L. Gasieniec, R. Klasing, A. Kosowski, and T. Radzik, Robustness of the rotor-router mechanism, in Proceedings of the 13th International Conference on Principles of DistributedSystems, vol. 5923 of Lecture Notes in Computer Science, Springer Berlin / Heidelberg, 2009, pp. 345–358.

[CI29] M. Barjon, A. Casteigts, S. Chaumette, C. Johnen, and Y. M. Neggaz, Un algorithme detest pour la connexité temporelle des graphes dynamiques de faible densité, in ALGOTEL 2014 – 16èmesRencontres Francophones sur les Aspects Algorithmiques des Télécommunications, 2014, pp. 1–4.

[CI30] F. Bassino, M. Bouvel, A. Pierrot, C. Pivoteau, and D. Rossin, Combinatorial specificationof permutation classes, in Proceedings of FPSAC 2012 (24th International Conference on Formal PowerSeries and Algebraic Combinatorics), vol. AR, 2012, pp. 781 – 792.

[CI31] O. Beaumont, N. Bonichon, L. Courtès, X. Hanin, and E. Dolstra, Mixed data-parallelscheduling for distributed continuous integration, in Heterogeneity in Computing Workshop, in IPDPS2012, IEEE, ed., 2012.

[CI32] O. Beaumont, N. Bonichon, P. Duchon, and H. Larchevêque, Use of internet embeddingtools for heterogeneous resources aggregation, in Heterogeneity in Computing Workshop (HCW) - inIPDPS 2011, IEEE, ed., 2011, pp. 114–124.

[CI33] O. Beaumont, N. Bonichon, P. Duchon, and H. Larchevêque, Utilisation d’outils de plonge-ment d’internet pour l’agrégation de ressources hétérogènes, in Conférence : 13es Rencontres Franco-phones sur les Aspects Algorithmiques de Télécommunications (AlgoTel), P. Ducourthial, Bertrandet Felber, ed., 2011.

[CI34] O. Beaumont, N. Bonichon, L. Eyraud-Dubois, and L. Marchal, Minimizing weighted meancompletion time for malleable tasks scheduling, in IPDPS 2012, 26th IEEE International Parallel &Distributed Processing Symposium, IEEE, ed., 2012.

[CI35] O. Beaumont, N. Bonichon, L. Eyraud-Dubois, and P. Uznanski, Broadcasting on large scaleheterogeneous platforms with connectivity artifacts under the bounded multi-port model, in ICPADS2011 - 17th Internation Conference on Parallel and Distributed Systems, IEEE, ed., vol. Proceeding ofICPADS 2011, 2011, pp. 173–180.

[CI36] O. Beaumont, N. Bonichon, and H. Larchevêque, Modeling and practical evaluation of aservice location problem in large scale networks, in Internation Conference on Parallel Computing2011, 2011, p. 10.

[CI37] O. Beaumont, P. Duchon, and P. Renaud-Goud, Approximation algorithms for energy min-imization in cloud service allocation under reliability constraints, in HIgh Performance Computing,2013, p. 20.


[CI38] O. Beaumont, L. Eyraud-Dubois, and S. Kumar, Broadcasting on large scale heterogeneousplatforms under the bounded multi-port model, in 24th IEEE International Parallel and DistributedProcessing Symposium (IPDPS 2010), 2010.

[CI39] O. Beaumont, L. Eyraud-Dubois, and H. Larchevêque, Reliable service allocation in clouds,in IPDPS - 27th IEEE International Parallel & Distributed Processing Symposium, 2013.

[CI40] O. Beaumont, L. Eyraud-Dubois, P. Pesneau, and P. Renaud-Goud, Reliable service alloca-tion in clouds with memory and capacity constraints, in Resilience 2013, in conjunction with EuroPar2013, 2013.

[CI41] O. Beaumont, L. Eyraud-Dubois, H. Rejeb, and C. Thraves, Allocation of clients to multipleservers on large scale heterogeneous platforms, in The Fifteenth International Conference on Paralleland Distributed Systems (ICPADS’09), 2009.

[CI42] O. Beaumont, L. Eyraud-Dubois, H. Rejeb, and C. Thraves, Online allocation of splitableclients to multiple servers on large scale heterogeneous platforms, in AlgoTel, A. Chaintreau andC. Magnien, eds., 2009.

[CI43] O. Beaumont, L. Eyraud-Dubois, H. Rejeb, and C. Thraves, On-line allocation of clients tomultiple servers on large scale heterogeneous systems, in PDP 2010 - The 18th Euromicro InternationalConference on Parallel, Distributed and Network-Based Computing, 2010.

[CI44] O. Beaumont, L. Eyraud-Dubois, and Y. Won, Using the last-mile model as a distributedscheme for available bandwidth prediction, in EuroPar 2011, Springer, ed., 2011.

[CI45] O. Beaumont, H. Larchevêque, and L. Marchal, Non linear divisible loads: There is no freelunch, in IPDPS 2013, 27th IEEE International Parallel & Distributed Processing Symposium, 2013.

[CI46] O. Beaumont and H. Rejeb, On the importance of bandwidth control mechanisms for schedulingon large scale heterogeneous platforms, in 24th IEEE International Parallel and Distributed ProcessingSymposium (IPDPS 2010), 2010.

[CI47] O. Beaumont and A. Rosenberg, Link-heterogeneity vs. node-heterogeneity in clusters, in HIPC– International Conference on High Performance Computing, 2010, 2010.

[CI48] F. Becker, A. Kosowski, N. Nisse, I. Rapaport, and K. Suchan, Allowing each node tocommunicate only once in a distributed system: Shared whiteboard models, in ACM, 2012, p. 7.

[CI49] W. Ben Jaballah, M. Mosbah, H. Youssef, and A. Zemmari, Lightweight source authentica-tion mechanisms for group communications in wireless sensor networks, in IEEE 27th InternationalConference on Advanced Information Networking and Applications (AINA), IEEE, 2013, pp. 598–605.

[CI50] A. Benoit, H. Larchevêque, and P. Renaud-Goud, Optimal algorithms and approximationalgorithms for replica placement with distance constraints in tree networks, in Proceedings of IPDPS2012, IEEE, 2012.

[CI51] L. Blin, A. Milani, M. Potop-Butucaru, and S. Tixeuil, Exclusive perpetual ring explorationwithout chirality, in DISC 2010 - 24th International Symposium Distributed Computing, N. A. Lynchand A. A. Shvartsman, eds., vol. 6343 of Lecture Notes in Computer Science, Springer, 2010, pp. 312–327.

[CI52] N. Bonichon, C. Gavoille, N. Hanusse, and D. Ilcinkas, Connections between theta-graphs,delaunay triangulations, and orthogonal surfaces, in Proceedings of the 36th International Workshopon Graph Theoretic Concepts in Computer Science, vol. 6410 of Lecture Notes in Computer Science,Springer Berlin / Heidelberg, 2010, pp. 266–278.

[CI53] N. Bonichon, C. Gavoille, N. Hanusse, D. Ilcinkas, and L. Perkovic, Comment résumerle plan, in 12èmes Rencontres Francophones sur les Aspects Algorithmiques de Télécommunications(AlgoTel), M. G. P.-B. et Hervé Rivano, ed., 2010.


[CI54] N. Bonichon, C. Gavoille, N. Hanusse, and L. Perkovic, Plane spanners of maximum de-gree six, in Automata, Languages and Programming 37th International Colloquium, ICALP 2010,Bordeaux, France, July 6-10, 2010, Proceedings, Part I, vol. 6198, 2010, pp. 19–30.

[CI55] N. Bonichon, C. Gavoille, N. Hanusse, and L. Perkovic, The stretch factor of L1- and L∞-Delaunay triangulations, in 20th Annual European Symposium on Algorithms (ESA), vol. 7501 ofLecture Notes in Computer Science, 2012, pp. 205–216.

[CI56] N. Bonichon, I. Kanj, L. Perkovic, and G. Xia, There are plane spanners of maximum degree4 (extended abstract), in proceedings of SoCG 2014, 2014.

[CI57] D. Bonnin and C. Travers, α-register, in OPODIS, R. Baldoni, N. Nisse, and M. van Steen, eds.,vol. 8304 of Lecture Notes in Computer Science, Springer, 2013, pp. 53–67.

[CI58] M. Bousquet-Mélou, G. Chapuy, and L.-F. Préville-Ratelle, The representation of thesymmetric group on m-Tamari intervals (conference version), in FPSAC 2012, 2012, pp. 351–353.

[CI59] M. Bousquet-Mélou, A. Claesson, and M. Dukes, Unlabeled (2+2)-free posets, ascent se-quences and pattern avoiding permutations (conference version), in Formal Power Series and AlgebraicCombinatorics, 2009.

[CI60] M. Bousquet-Mélou and J. Courtiel, Spanning forests in regular planar maps (conference ver-sion), in FPSAC 2013, 2013.

[CI61] M. Bousquet-Mélou and K. Weller, Asymptotic properties of some minor-closed classes ofgraphs (conference version), in FPSAC 2013, 2013.

[CI62] A. Boussicault and V. Féray, Application of graph combinatorics to rational identities of type A(extended abstract), in DMTCS Proceedings, 21th Annual International Conference on Formal PowerSeries and Algebraic Combinatorics, 2009, pp. 231–242.

[CI63] M. Bouvel and O. Guibert, Refined enumeration of permutations sorted with two stacks and aD8-symmetry, in Proceedings of FPSAC 2012 (24th International Conference on Formal Power Seriesand Algebraic Combinatorics), vol. AR, 2012, pp. 757–768.

[CI64] M. Bouvel, M. Mishna, and C. Nicaud, Some simple varieties of trees arising in permutationanalysis (extended abstract), in Discrete Mathematics & Theoretical Computer Science (DMTCS),vol. AS, 2013, pp. 825–836.

[CI65] O. Bodini, A. Jacquot, P. Duchon, and L. R. Mutafchiev, Asymptotic analysis and randomsampling of digitally convex polyominoes, in DGCI 2013, 2013, pp. 95–106.

[CI66] F. Bonnet, A. Milani, M. Potop-Butucaru, and S. Tixeuil, Asynchronous exclusive perpetualgrid exploration without sense of direction, in OPODIS 2011 - 15th International Conference Principlesof Distributed Systems, A. F. Anta, G. Lipari, and M. Roy, eds., vol. 7109 of Lecture Notes in ComputerScience, Springer, 2011, pp. 251–265.

[CI67] Z. Bouzid, P. Sutra, and C. Travers, Anonymous agreement: The janus algorithm, in OPODIS,A. F. Anta, G. Lipari, and M. Roy, eds., vol. 7109 of Lecture Notes in Computer Science, Springer,2011, pp. 175–190.

[CI68] Z. Bouzid and C. Travers, (anti−Ωx×Σz)-based k-set agreement algorithms, in OPODIS, C. Lu,T. Masuzawa, and M. Mosbah, eds., vol. 6490 of Lecture Notes in Computer Science, Springer, 2010,pp. 189–204.

[CI69] Z. Bouzid and C. Travers, Parallel consensus is harder than set agreement in message passing,in ICDCS, IEEE, 2013, pp. 611–620.


[CI70] H.-J. Böckenhauer, R. Klasing, T. Mömke, and M. Steinová, Improved approximations fortsp with simple precedence constraints, in Proceedings of the 7th International Conference on Algo-rithms and Complexity, vol. 6078 of Lecture Notes in Computer Science, 2010, pp. 61–72.

[CI71] C. Carvajal, T. Viéville, and F. Alexandre, Impact of the konio pathway in the thalamocorticalvisual system: a modeling study, in CNS - 22nd Annual Computational Neuroscience Meeting - 2013,2013.

[CI72] J. Chalopin, S. Das, and A. Kosowski, Constructing a map of an anonymous graph: Applicationsof universal sequences, in OPODIS - 14th International Conference On Principles Of DIstributedSystems - 2010, vol. 6490 of Lecture Notes in Computer Science, Springer, 2010, pp. 119–134.

[CI73] J. Chalopin, Y. Métivier, and T. Morsellino, On snapshots and stable properties detection inanonymous fully distributed systems (extended abstract), in 19th International Colloquium on Struc-tural Information and Communication Complexity, G. Even and M. M. Halldorsson, eds., vol. 7355 ofLecture notes in computer science, Springer-Verlag, 2012, pp. 207–218.

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[CI188] S. Sen, Maximum order of a planar oclique is 15, in Lecture Notes in Computer Science, vol. 7643,2012, pp. 130–142.

[CI189] N. Shah and F. Alexandre, Cooperation between reinforcement and procedural learning in thebasal ganglia, in International Joint Conference on Neural Networks IJCNN 2011 Special Topic Neu-roscience and Neurocognition, 2011.

[CI190] N. Shah and F. Alexandre, Reinforcement learning and dimensionality reduction: a model incomputational neuroscience, in International Joint Conference on Neural Networks IJCNN 2011, 2011.

[CI191] W. Taouali, F. Alexandre, A. Hutt, and N. P. Rougier, Asynchronous evaluation as anefficient and natural way to compute neural networks, in 7th International Conference of Numeri-cal Analysis and Applied Mathematics - ICNAAM 2009, vol. 1168, pp. 554-558 of AIP ConferenceProceedings, 2009.

[CI192] W. Taouali, N. P. Rougier, and F. Alexandre, Saccades generation : from the visual inputto the superior colliculus, in International Conference on Neural Computation ICNC 2010, 2010.

[CI193] W. Taouali, N. P. Rougier, and F. Alexandre, A basic model of saccades encoding, in TheNeuroComp/KEOpS’12 workshop, 2012.

Conferences with published proceedings (national)

[CN1] F. Alexandre and N. Shah, Apprentissage par renforcement et réduction de la dimensionnalité :une approche bio-inspirée, in Conférence francophone d’Apprentissage - CAP 2011, 2011.

[CN2] D. Bonnin and C. Travers, α-registres, in ALGOTEL 2014 – 16èmes Rencontres Francophonessur les Aspects Algorithmiques des Télécommunications, 2014, pp. 1–4.

[CN3] M. Carrere and F. Alexandre, Émergence de catégories par interaction entre systèmesd’apprentissage, in Conférence Francophone sur l’Apprentissage Automatique (CAP), P. Preux andM. Tommasi, eds., 2013.

[CN4] L. Eyraud-Dubois, A. Lèbre, P. Martineau, A. Soukhal, V. T’Kindt, and D. Trystram,A server consolidation problem: Definition and model, in Proceedings of the 14th conference ROADEF,2013.


[CN5] L. Eyraud-Dubois and P. Uznanski, Bedibe: Datasets and software tools for distributed bandwidthprediction, in AlgoTel’2012 - Rencontres Francophones sur les Aspects Algorithmiques des Télécommu-nications, N. Hanusse and F. Mathieu, eds., 2012.

[CN6] E. Garnaud, N. Hanusse, S. Maabout, and N. Novelli, Calcul parallèle de dépendances, inActes de la conférence BDA (Bases de Données Avancées), 2013, pp. 1–20.

[CN7] C. Gavoille and Y. Dieng, Routage dans les réseaux cellulaires, in 10ièmes Journées Doctoralesen Informatique et Réseaux, 2009, pp. 7–12.

[CN8] N. Hanusse, S. Maabout, and R. Tofan, Algorithmes pour la sélection de vues à matérialiseravec garantie de performance, in Actes de la conférence EDA 2009, 2009, pp. 1–15.

[CN9] V. Vèque and C. Johnen, Hiérarchisation dans les réseaux ad hoc de véhicules, in Ubimob’12,R.-C. N. . a. Roose Ph., ed., Données - informatique - I.A. - IHM, CEPADUES, 2012, pp. 45–52.

Conferences without published proceedings (international)

[SI1] J.-C. Aval, A. Boussicault, and S. Dasse-Hartaut, The tree structure in staircase tableaux, inGASCOM 2012, 2012.

[SI2] O. Baudon, J. Bensmail, J. Przybylo, E. Sopena, and M. Wozniak, On the size of graphsthat can be partitioned under a given number of prescriptions, in 4th Polish Combinatorial Conference(4PCC), 2012.

[SI3] O. Baudon, F. Gilbert, and M. Wozniak, Recursively arbitrarily vertex-decomposable graphs, in8th French Combinatorial Conference, 2010.

[SI4] T. Beati, M. Carrere, and F. Alexandre, Which reinforcing signals in autonomous systems?, inThird International Symposium on Biology of Decision Making, 2013.

[SI5] O. Beaumont, L. Eyraud-Dubois, H. Rejeb, and C. Thraves, Online and offline independenttasks allocation schemes on large scale master-worker heterogeneous platforms., in 1st Workshop onNew Challenges in Distributed Systems, 2009.

[SI6] C. Carvajal, T. Viéville, and F. Alexandre, To flee or not to flee? neural field dynamics shapeinformation flows in a model of the thalamocortical visual system, in BC - Bernstein Conference - 2013,2013.

[SI7] L. Campagnola, A. Klein, C. Rossant, and N. Rougier, Vispy, a modern and interactivescientific visualisation, in Euroscipy 2013, 2013.

[SI8] F. Kaisser, C. Johnen, and V. Vèque, Étude de la formation de convois dans un réseau de véhiculessur autoroute, in CFIP 2011 - Colloque Francophone sur l Ingénierie des Protocoles, 2011.

[SI9] E. Sopena, Upper oriented chromatic number of undirected graphs and oriented colorings of productgraphs, in 8th French Combinatorial Conference 8FCC, 2010.

[SI10] E. Sopena, Cgt inspired tools for studying the game chromatic number of trees, in DIMAP Workshopon Combinatorics and Graph Theory 2011, 2011.

[SI11] W. Taouali, T. Viéville, N. P. Rougier, and F. Alexandre, On asynchronous dynamic neu-ral field computation, in Cinquième conférence plénière française de Neurosciences Computationnelles,"Neurocomp’10", 2010.

[SI12] E. Teftef, C. Carvajal, T. Viéville, and F. Alexandre, When early vision in the retinaattempts to take decisions about visual motion events : the role of konio cells, in Third InternationalSymposium on Biology of Decision Making, 2013.

BIBLIOGRAPHY 209

[SI13] A. Zvonkine, On a family of uniform dessins, cousins of Bring’s icosahedron, in Riemann surfacesand dessins d’enfants, 2010.

[SI14] A. Zvonkine, Around the icosahedron, in Conférence à l’honneur du 75ème anniversaire de AlexeiSossinsky, 2012.

[SI15] A. Zvonkine, Weighted trees, in Groups and Riemann surfaces, 2012.

Conferences without published proceedings (national)

[SN1] J. Andrieu, F. Alexandre, A. Genin, and J. San-Emeterio, Ressource fourragère en afriquesoudano-sahélienne : estimation, cartographie, et suivi par analyse de séries temporelles de ndvi noaa,in LES SATELLITES GRAND CHAMP pour le suivi de l’environnement, des ressources naturelles etdes risques, Clermont-Ferrand : France (2010), 2010.

[SN2] N. Bonichon, M. Bousquet-Mélou, and E. Fusy, Permutations de Baxter et orientations bipo-laires, in Premières Journées de Combinatoire de Bordeaux, 2009.

[SN3] M. Bousquet-Mélou, Comptage de cartes planaires coloriées, in Première journée du projet ANRA3, 2009.

[SN4] M. Bousquet-Mélou, Sada : Structures aléatoires discrètes et algorithmes, in Colloque de bilan dupremier programme Blanc de l’ANR, 2009.

[SN5] C. Carvajal, T. Viéville, and F. Alexandre, Konio pathway: An instinctive visual mecha-nism for survival and decision making?, in NeuroComp/KEOpS’12 workshop beyond the retina: fromcomputational models to outcomes in bioengineering. Focus on architecture and dynamics sustaininginformation flows in the visuomotor system., 2012.

[SN6] E. Diot and C. Gavoille, La hiérarchie des graphes k-chemin séparables, in 12e Journées Grapheset Algorithmes, 2010.

[SN7] C. Gavoille, Q. Godfroy, and L. Viennot, Spanners additifs de taille sous-quadratique pour lesgraphes orientés, in 12e Journées Graphes et Algorithmes, CIRM, ed., 2010, p. 9.

[SN8] O. Guibert and M. Bouvel, Quelques cas d’énumération de permutations triées par pile et encombinant des symétries, in Journées de Combinatoire de Bordeaux, 2013.

[SN9] A. Zvonkine, Dessiner les fonctions rationnelles (et méromorphes), in Journées Combinatoires deBordeaux ’09, 2009.

[SN10] A. Zvonkine, Deux remarques combinatoires à l’exposé de Yuri Bilu, in Journées Math-Info, 2010.

[SN11] A. Zvonkine, Existence et unicité d’objets combinatoires, in Journées Arbres, 2010.

Other publications (international)

[AI1] I. Abraham, C. Gavoille, A. Gupta, O. Neiman, and T. Kunal, Cops, robbers, and threateningskeletons: Padded decomposition for minor-free graphs, tech. rep., 2013.

[AI2] Y. Afek, E. Gafni, S. Rajsbaum, M. Raynal, and C. Travers, The k-simultaneous consensusproblem, tech. rep., 2009.

[AI3] F. Alexandre, J. Fix, N. P. Rougier, and T. Viéville, Algorithmic adjustment of neural fieldparameters, tech. rep., 2009.

[AI4] M. Albert and M. Bousquet-Mélou, Permutations sortable by two stacks in parallel and quarterplane walks, tech. rep., 2013.

[AI5] D. Alistarh, H. Attiya, R. Guerraoui, and C. Travers, Early deciding synchronous renamingin o(log f ) rounds or less, tech. rep., 2012.


[AI6] J.-C. Aval, A. Boussicault, and S. Dasse-Hartaut, The tree structure in staircase tableaux.2012.

[AI7] J.-C. Aval, M. D’Adderio, M. Dukes, and Y. Le Borgne, Two operators on sandpile configu-rations, the sandpile model on the complete bipartite graph, and a cyclic lemma. 2013.

[AI8] O. Baudon and J. Bensmail, Partitioning the cartesian product of an arbitrarily partitionable graphand a complete graph, tech. rep., 2012.

[AI9] O. Baudon, J. Bensmail, F. Foucaud, and M. Pilsniak, Structural properties of recursivelypartitionable graphs with connectivity 2. 2012.

[AI10] O. Baudon, J. Bensmail, and E. Sopena, The irregular chromatic index of trees, tech. rep., 2013.

[AI11] O. Baudon, J. Bensmail, and E. Sopena, On the complexity of determining the irregular chro-matic index of a graph, tech. rep., 2013.

[AI12] O. Baudon, J. Bensmail, and E. Sopena, Partitioning harary graphs into connected subgraphscontaining prescribed vertices. 2013.

[AI13] O. Baudon, F. Foucaud, and M. Pilsniak, A note on online and recursively arbitrarily vertex-partitionable balloons, tech. rep., 2012.

[AI14] O. Baudon, F. Foucaud, J. Przybylo, and M. Wozniak, On the structure of arbitrarily par-titionable graphs with given connectivity. 2012.

[AI15] O. Baudon, F. Gilbert, and M. Wozniak, Recursively arbitrarily vertex decomposable suns.2010.

[AI16] O. Baudon, F. Gilbert, and M. Wozniak, Recursively arbitrarily vertex-decomposable graphs.2012.

[AI17] C. Bachoc, A. Pêcher, and A. Thiery, On the theta number of powers of cycle graphs. 2011.

[AI18] O. Beaumont, L. Bobelin, H. Casanova, P.-N. Clauss, B. Donassolo, L. Eyraud-Dubois,S. Genaud, S. Hunold, A. Legrand, M. Quinson, C. Rosa, L. Schnorr, M. Stillwell,F. Suter, C. Thiery, P. Velho, J.-M. Vincent, and Y. Won, Towards scalable, accurate, andusable simulations of distributed applications and systems, tech. rep., 2011.

[AI19] O. Beaumont, M. Dojwa, P. Duchon, R. Elsässer, R. Klasing, and M. Korzeniowski,Fast generation and mixing of random graphs in peer-to-peer networks. 2011.

[AI20] O. Beaumont, L. Eyraud-Dubois, H. Rejeb, and C. Thraves, Extended version: Onlineallocation of splitable clients to multiple servers on large scale heterogeneous platforms, tech. rep., 2009.

[AI21] O. Beaumont, L. Eyraud-Dubois, H. Rejeb, and C. Thraves, Heterogeneous resource alloca-tion under degree constraints. 2011.

[AI22] O. Beaumont, L. Eyraud-Dubois, and P. Renaud-Goud, Efficient and robust allocation algo-rithms in clouds under memory constraints. 2013.

[AI23] O. Beaumont, H. Larchevêque, and L. Marchal, Non-linear divisible loads: There is no freelunch, tech. rep., 2012.

[AI24] O. Beaumont and L. Marchal, What makes affinity-based schedulers so efficient ? 2013.

[AI25] J. Bensmail, Complexity of determining the irregular chromatic index of a graph, tech. rep., 2013.

[AI26] J. Bensmail, On the path cover number of k-assignable arbitrarily partitionable graphs. 2013.

[AI27] J. Bensmail, On three polynomial kernels of sequences for arbitrarily partitionable graphs. 2013.


[AI28] J. Bensmail, The vertex-colouring a,b-edge-weighting problem is np-complete for every pair ofweights, tech. rep., 2013.

[AI29] J. Bensmail, R. Duvignau, and S. Kirgizov, The complexity of deciding whether a graph admitsan orientation with fixed weak diameter, tech. rep., 2013.

[AI30] J. Bensmail, A. Harutyunyan, H. Hocquard, and P. Valicov, Strong edge-colouring of sparseplanar graphs. 2014.

[AI31] J. Bensmail and G. Renault, Decomposing oriented graphs into 6 locally irregular oriented graphs.2013.

[AI32] A. Benoit, H. Larchevêque, and P. Renaud-Goud, Optimal algorithms and approximationalgorithms for replica placement with distance constraints in tree networks, tech. rep., 2011.

[AI33] P. Berenbrink, R. Klasing, A. Kosowski, F. Mallmann-Trenn, and P. Uznanski, Be fairand be selfish! characterizing deterministic diffusive load-balancing schemes with small discrepancy.2014.

[AI34] P. Berthomé, T. Bouvier, F. Mazoit, N. Nisse, and R. Pardo Soares, An unified fptalgorithm for width of partition functions, tech. rep., 2013.

[AI35] L. Blin, A. Milani, M. Potop-Butucaru, and S. Tixeuil, Exclusive perpetual ring explorationwithout chirality, tech. rep., 2010.

[AI36] N. Bonichon, C. Gavoille, N. Hanusse, and D. Ilcinkas, Connections between theta-graphs,delaunay triangulations, and orthogonal surfaces. 2010.

[AI37] N. Bonichon, C. Gavoille, N. Hanusse, and L. Perkovic, The stretch factor of l1- and l∞-delaunay triangulations, tech. rep., 2012.

[AI38] N. Bonichon, C. Gavoille, N. Hanusse, and L. Perkovic, The stretch factor of L1- andL∞-Delaunay triangulations. Poster at STOC, 2012.

[AI39] N. Bonichon, I. Kanj, L. Perković, and G. Xia, There are plane spanners of maximum degree4. 2014.

[AI40] D. Bonnin and C. Travers, α-register. 2013.

[AI41] M. Bousquet-Mélou, G. Chapuy, and L.-F. Préville Ratelle, Tamari lattices and parkingfunctions: proof of a conjecture of F. Bergeron, tech. rep., 2011.

[AI42] M. Bousquet-Mélou and J. Courtiel, Spanning forests in regular planar maps, tech. rep., 2013.

[AI43] F. Bonnet, A. Milani, M. Potop-Butucaru, and S. Tixeuil, Asynchronous exclusive perpetualgrid exploration without sense of direction, tech. rep., 2011.

[AI44] O. Borodin, A. Ivanova, M. Montassier, and A. Raspaud, (k, 1)-coloring of sparse graphs.Rapport de Recherche RR-1465-09 LaBRI, 2009.

[AI45] L. Bougrain, C. Saavedra, B. Payan, A. Hutt, M. Rio, and F. Alexandre, Inria’s project-team cortex : Computational neuroscience. 2010.

[AI46] Z. Bouzid, P. Sutra, and C. Travers, Anonymous agreement: The janus algorithm. 2011.

[AI47] Z. Bouzid and C. Travers, (anti−Ωx × Σz)-based k-set agreement algorithms, tech. rep., 2010.

[AI48] Z. Bouzid and C. Travers, Anonymity, failures, detectors and consensus. 2012.

[AI49] Z. Bouzid and C. Travers, Simultaneous consensus is harder than set agreement in messagepassing. 2012.


[AI50] B. Brešar, P. Dorbec, S. Klavzar, and G. Kosmrlj, Domination game: effect of edge- andvertex-removal. arXiv:1307.5378v1 [math.CO], 2013.

[AI51] C. Carvajal, T. Viéville, and F. Alexandre, Impact of the konio pathway in the thalamocorticalvisual system: a modeling study. 2013.

[AI52] C. Carvajal, T. Viéville, and F. Alexandre, A modeling study of the dynamic interplay betweenpathways in the thalamocortical visual system: The magno and koniocellular streams case. Poster of pastand ongoing thesis/research work for the autumn conference of my graduate school (APIL: Annual PhDstudents conference IAEM Lorraine), 2013.

[AI53] J. Chalopin, Y. Métivier, and T. Morsellino, Enumeration and leader election in partiallyanonymous and multi-hop broadcast networks. 2010.

[AI54] G. Chang, F. Havet, M. Montassier, and A. Raspaud, Steinberg’s conjecture and near-colorings, tech. rep., 2011.

[AI55] M. Chen, M. Montassier, and A. Raspaud, Some structural properties of planar graphs andtheir applications to 3-choosability. Rapport de Recherche RR-1455-09 LaBRI, 2009.

[AI56] R. Cori and G. Hetyei, Counting genus one partitions and permutations. 2013.

[AI57] R. Cori and Y. Le Borgne, The Riemann-Roch theorem for graphs and the rank in completegraphs. 2013.

[AI58] B. Courcelle, C. Gavoille, M. M. Kanté, and A. Twigg, Optimal labelling for connectivitychecking in planar networks with obstacles. 2009.

[AI59] J. Czyzowicz, D. Ilcinkas, A. Labourel, and A. Pelc, Asynchronous deterministic rendezvousin bounded terrains. Rapport de recherche du LaBRI : RR-1467-09, 2009.

[AI60] J. Czyzowicz, D. Ilcinkas, A. Labourel, and A. Pelc, Optimal exploration of terrains withobstacles. Rapport de recherche du LaBRI : RR-1468-09, 2009.

[AI61] J. Czyzowicz, E. Kranakis, D. Pajak, and N. Taleb, Patrolling by robots equipped with visi-bility. 2014.

[AI62] J. Czyzowicz, A. Labourel, and A. Pelc, How to meet asynchronously (almost) everywhere.2009.

[AI63] S. Das, D. Dereniowski, A. Kosowski, and P. Uznanski, Rendezvous of distance-aware mobileagents in unknown graphs. 2014.

[AI64] D. Dereniowski, R. Klasing, A. Kosowski, and L. Kuszner, Rendezvous of heterogeneousmobile agents in edge-weighted networks. 2014.

[AI65] D. Dereniowski, A. Kosowski, and D. Pajak, Distinguishing views in symmetric networks: Atight lower bound. 2013.

[AI66] G. Detorakis and N. Rougier, A computational view of area 3b of primary somatosensory cortex.2013.

[AI67] O. Devillers, P. Duchon, and R. Thomasse, A generator of random convex polygons in a disc,tech. rep., 2014.

[AI68] O. Devillers, P. Duchon, and R. Thomasse, A generator of random convex polygons in a disc.2014.

[AI69] E. Diot and C. Gavoille, Path separability of graphs. 2010.

[AI70] M. Dolega and V. Féray, On Kerov polynomials for Jack characters. 2012.


[AI71] F. Ellen, P. Fatourou, E. Kosmas, A. Milani, and C. Travers, Universal constructions thatensure disjoint-access parallelism and wait-freedom, tech. rep., 2012.

[AI72] L. Eyraud-Dubois and P. Uznanski, Point-to-point and congestion bandwidth estimation: exper-imental evaluation on planetlab. 2013.

[AI73] B. Florent, A. Kosowski, N. Nisse, I. Rapaport, and K. Suchan, Interconnection networkwith a shared whiteboard: Impact of (a)synchronicity on computing power, tech. rep., 2011.

[AI74] P. Fraigniaud, S. Rajsbaum, and C. Travers, Locality and checkability in wait-free computing,tech. rep., 2011.

[AI75] P. Fraigniaud, S. Rajsbaum, and C. Travers, On the number of opinions needed for fault-tolerant run-time monitoring in distributed systems. 2014.

[AI76] C. Gavoille, Q. Godfroy, and L. Viennot, Node-disjoint multipath spanners and their relation-ship with fault-tolerant spanners, tech. rep., 2011.

[AI77] C. Gavoille, A. Kosowski, and M. Markiewicz, What can be observed locally? round-basedmodels for quantum distributed computing. Rapport de recherche, 2009.

[AI78] E. Godard, Y. Métivier, and G. Tel, Termination detection of local computations. Rapport deRecherche RR-1466-09 LaBRI, 2009.

[AI79] R. Gorojosky and F. Alexandre, Models of hippocampus for pavlovian learning, tech. rep., 2013.

[AI80] N. Hanusse, D. Ilcinkas, A. Kosowski, and N. Nisse, How to beat the random walk when youhave a clock?, tech. rep., 2010.

[AI81] H. Hocquard and M. Montassier, Acyclic coloring of graphs with maximum degree five. Rapportde recherche RR-1450-08 LaBRI, 2010.

[AI82] H. Hocquard, M. Montassier, and A. Raspaud, A note on the acyclic 3-choosability of someplanar graphs. Rapport de Recherche RR-1463-09 LaBRI, 2009.

[AI83] C. Johnen, Fast self-stabilizing k-independent dominating set construction, tech. rep., 2013.

[AI84] C. Johnen, Memory efficient self-stabilizing k-independent dominating set construction, tech. rep.,2013.

[AI85] C. Johnen and F. Mekhaldi, From self- to self-stabilizing with service guarantee 1-hop weight-basedclustering, tech. rep., 2012.

[AI86] A. Kosowski, B. Li, N. Nisse, and K. Suchan, k-chordal graphs: from cops and robber to compactrouting via treewidth, tech. rep., 2012.

[AI87] A. Kosowski and M. Markiewicz, Lower bounds on the communication complexity of binary localquantum measurement simulation. 2013.

[AI88] A. Kosowski and D. Pajak, Does adding more agents make a difference? a case study of covertime for the rotor-router. 2014.

[AI89] F. Mazoit, A simple proof of the tree-width duality theorem, tech. rep., 2013.

[AI90] F. Mazoit, A single exponential bound for the redundant vertex theorem on surfaces. 2013.

[AI91] M. Markiewicz, A. Kosowski, T. Tylec, J. Pykacz, and C. Gavoille, Static quantum gamesrevisited, tech. rep., 2014.

[AI92] M. Montassier, A. Pêcher, A. Raspaud, and X. Zhu, Edge-partitions of sparse graphs andtheir applications to game coloring. Rapport de recherche RR-1453-09 LaBRI, 2009.


[AI93] L.-F. Préville-Ratelle and X. Viennot, An extension of Tamari lattices. 2014.

[AI94] E. Teftef, M.-J. Escobar, A. Astudillo, C. Carvajal, B. Cessac, A. Palacios,T. Viéville, and F. Alexandre, Modeling non-standard retinal in/out function using computervision variational methods, tech. rep., 2013.

[AI95] C. Travers, S. Rajsbaum, and M. Raynal, The iterated restricted immediate snapshot model,tech. rep., 2013.

[AI96] A. Zvonkine, Math from three to seven: The story of a mathematical circle for preschoolers. Unouvrage de type pédagogique publié par MSRI et AMS dans la série "MSRI Mathematical CirclesLibrary", 2011.

[AI97] A. Zvonkine, Enumeration of weighted plane trees. 2014.

Other publications (national)

[AN1] F. Alexandre, Comprendre les réseaux cérébraux, tech. rep., 2013.

[AN2] F. Alexandre, C. Carvajal, and T. Viéville, Comprendre le système le plus complexe de notreplanète ? 2013.

[AN3] J. Bensmail, Préaffectation de sommets dans les graphes arbitrairement partitionnables, tech. rep.,2011.

[AN4] C. Glacet, C. Gavoille, N. Hanusse, D. Ilcinkas, and F. Majorczyk, Simulations de routagedu schéma agmant. Rapport de contrat (final), 2011.

[AN5] J.-F. Marckert, Etude probabiliste de structures combinatoires. 2010.

[AN6] T. Morsellino and T. F. Bissyandé, Une approche métier au développement d’applications pourmilieux pervasifs. Rapport de Recherche RR-1453-11 LaBRI, 2010.

[AN7] N. Rougier, C++ crash course. 2012.

[AN8] N. Rougier, Matplotlib tutorial. 2012.

[AN9] N. Rougier, Outils et bibliothèques de visualisation. 2013.

[AN10] A. Rousseau, A. Darnaud, B. Goglin, C. Acharian, C. Leininger, C. Godin, C. Ho-lik, C. Kirchner, D. Rives, E. Darquie, E. Kerrien, F. Neyret, F. Masseglia, F. Du-four, G. Berry, G. Dowek, H. Robak, H. Xypas, I. Illina, I. Gnaedig, J. Jongwane,J. Ehrel, L. Viennot, L. Guion, L. Calderan, L. Kovacic, M. Collin, M.-A. Enard, M.-H.Comte, M. Quinson, M. Olivi, M. Giraud, M. Dorémus, M. Ogouchi, M. Droin, N. La-caux, N. Rougier, N. Roussel, P. Guitton, P. Peterlongo, R.-M. Cornus, S. Vander-meersch, S. Maheo, S. Lefebvre, S. Boldo, T. Viéville, V. Poirel, A. Chabreuil, A. Fis-cher, C. Farge, C. Vadel, I. Astic, J.-P. Dumont, L. Féjoz, P. Rambert, P. Paradinas,S. De Quatrebarbes, and S. Laurent, Médiation scientifique : une facette de nos métiers de larecherche, tech. rep., 2013.

Free software– AlgoKP, https://realopt.bordeaux.inria.fr/?page_id=161, Joncour, Pêcher, Valicov– MLV Library, http://www-igm.univ-mlv.fr/~boussica/mlv/api/French/html/index.html,A. Boussicault

– Sage-Combinat, http://wiki.sagemath.org/combinat/, A. Boussicault, V. Delecroix, ...– visidia, http://visidia.labri.fr, P. Castéran, Y. Métivier, M. Mosbah, A. Zemmari

Completed PhDs

https://realopt.bordeaux.inria.fr/?page_id=161

http://www-igm.univ-mlv.fr/~boussica/mlv/api/French/html/index.html

http://wiki.sagemath.org/combinat/

http://visidia.labri.fr


– A. Bacher (dir: M. Bousquet-Mélou), Doctorat d’Informatique, Université Bordeaux 1, “Chemins etanimaux : applications de la théorie des empilements de pièces”, October 2011

– J. Bensmail (dir: E. Sopena, O. Baudon), Doctorat d’Informatique, Université de Bordeaux, “Partitionsand decompositions of graphs”, June 2014

– C. Charpentier (dir: A. Raspaud, M. Montassier), Doctorat d’Informatique, Université de Bordeaux,“Colorations, jeux et marquages dans les graphes”, March 2014

– Y. Dieng (dir: C. Gavoille), LaBRI, U. Bordeaux, “Décomposition arborescente des graphes planaires etroutage compact”, December 2009

– E. Diot (dir: C. Gavoille), LaBRI, U. Bordeaux, “Etude structurelle et algorithmique des graphes pouvantêtre découpés par des plus courts chemins”, December 2011

– A. Fontaine (dir: A. Zemmari, P. Casteran), Doctorat d’Informatique, Université de Bordeaux, “Analyseset preuves formelles d’algorithmes distribués probabilistes”, June 2014

– F. Foucaud (dir: R. Klasing, A. Raspaud), Doctorat d’Informatique, Université Bordeaux 1, “Combinato-rial and algorithmic aspects of identifying codes in graphs”, December 2012

– C. Glacet (dir. N. Hanusse, D. Ilcinkas), Doctorat d’informatique, Université Bordeaux 1, “Algorithmesde routage, de la réduction des coûts de communication à la dynamique”, December 2013

– Q. Godfroy (dir: C. Gavoille), LaBRI, U. Bordeaux, “From spanners to multipath spanners”, November2012

– A. Guignard (dir: E. Sopena), Doctorat d’Informatique, Université Bordeaux 1, “Jeux de coloration degraphes”, December 2011

– M. A. Haddard (dir: Y. Métivier, M. Mosbah), Doctorat d’informatique, Université Bordeaux 1, “Codaged’algorithmes distribués d’agents mobiles à l’aide de calculs locaux”, December 2011

– H. Hocquard (dir: A. Raspaud, M. Montassier), “Colorations de graphes sous contraintes”, December 2011– H. Larchevêque (dir: O. Beaumont, N. Bonichon, Ph. Duchon), Doctorat d’Informatique, UniversitéBordeaux 1, “Agrégation de ressources avec contrainte de distance: applications aux plateformes de grandeéchelle”, September 2010

– F. Le Gac (dir: R. Cori, Ph. Duchon), Doctorat d’Informatique, Université Bordeaux 1, “Quelquesproblèmes d’énumération autour des matrices à signes alternants”, July 2011

– Th. Morsellino (dir: J. Chalopin, Y. Métivier), Doctorat d’informatique, Université Bordeaux 1, “Présenta-tion et étude de quelques problèmes d’algorithmique distribuée”, September 2012

– D. Pajak (dir: R. Klasing, A. Kosowski), Doctorat d’Informatique, Université de Bordeaux, “Algorithmsfor deterministic parallel graph exploration”, June 2014

– H. Rejeb (dir: O. Beaumont, L. Eyraud-Dubois), Doctorat d’Informatique, Université Bordeaux 1, “Étudedes problèmes d’ordonnancement sur des plates-formes hétérogènes en modèle multi-port”, August 2011

– G. Renault (dir: P. Dorbec, E. Sopena), Doctorat d’Informatique, Université Bordeaux 1, “Combinatorialgames on graphs”, November 2013

– S. Sen (dir: E. Sopena, A. Raspaud, A. Pêcher), “A contribution to the theory of graph homorphisms andcolorings”, March 2014

– R. Tofan (dir: N. Hanusse, S. Maabout, C. Gavoille), LaBRI, U. Bordeaux, “Bordures: de la sélection devues dans un cube de données au calcul parallèle de fréquents maximaux”, September 2010

– P. Uznanski (dir: O. Beaumont, N. Bonichon, L. Eyraud-Dubois), Doctorat d’Informatique, UniversitéBordeaux 1, “Modélisation des communications sur plates-formes à grande echelles”, October 2013

– P. Valicov (dir: A. Pêcher, M. Montassier, E. Sopena), “On packing, colouring and identification problems”,July 2013

– A.M. Wade (dir: D. Ilcinkas, R. Klasing), Doctorat d’Informatique, Université de Bordeaux, “Complexitéde l’exploration par agent mobile des graphes dynamiques”, January 2014

including cotutelle PhDs (international)– M. Chen (dir: A. Raspaud, Weifan Wang - Zhejiang Normal University, Jinhua, China), Doctoratd’Informatique, Université Bordeaux 1, “Coloration de graphes”, November 2010


– N. Roussel (dir: A. Raspaud, Xuding Zhu - Sun Yat Sen University, Kaoshiung, Taiwan), Doctoratd’Informatique, Université Bordeaux 1, “Coloration circulaire et acyclique par liste de graphes”, December2009

including cotutelle PhDs (national)– F. Mekhaldi (dir: C. Johnen, Véronique Vèque), Doctorat d’Informatique, Université Paris-Sud, “Clus-tering in mobile ad-hoc networks : design and evaluation of robust self-stabilizing protocols”, December2011

Completed habilitations– J.-C. Aval, HDR, Université Bordeaux 1, Combinatoire autour du groupe symétrique, February 2013– N. Bonichon, HDR, Université Bordeaux 1, Quelques algorithmes entre le monde des graphes et les nuagesde points, April 2013

– P. Dorbec, HDR, Université Bordeaux 1, Graphes, jeux et propagation, July 2013– N. Hanusse, HDR, Université Bordeaux 1, Navigation dans les grands graphes, November 2009– R. Klasing, HDR, Université Bordeaux 1, Algorithmic Methods for Large Communication Networks,November 2009

– A. Kosowski, HDR, Université Bordeaux 1, Efficient Algorithms for Mobile Agents in an AnonymousNetwork, September 2013

– M. Montassier, HDR, Université Bordeaux 1, On some coloring problems of Graphs, November 2010– N. P. Rougier, HDR, Université Nancy 2, Fondements Biologiques pour le calcul distribué, numérique etadaptatif, May 2011

– A. Zemmari, HDR, Université Bordeaux 1, Présentation et analyse de quelques algorithmes distribuésprobabilistes, October 2009

F.1.2 Visibility and attractivityPrizes and distinctions

Distinctions– M. Bousquet-Mélou, Silver Medal CNRS, 2014– M. Bousquet-Mélou, de Saulses de Freycinet Prize, French Academy of Sciences, 2009– V. Féray, Laureate of the Peccot Foundation, Collège de France, 2012– C. Gavoille, Nomination to the Institut Universitaire de France – IUF Junior Member, 2009– A. Kosowski has been elected member of the Young Scientist Academy of the Polish Academy of Sciences,2012-2016

– A. Kosowski, Witold Lipski Prize for Young Researchers in Computer Science, 2009– A. Zvonkine, Nomination to the Gabriel Lamé chair, Univ. Saint Petersburg, 2014

Top Citation Papers– Top Citation Paper of Theoretical Computer Science in 2010 for the period 2005-2010 (Philippe Duchon,Nicolas Hanusse): Could any graph be turned into a small-world?, Theor. Comput. Sci. 355(1): 96-103(2006)

– Bresar, Dorbec, Goddard et al., Vizing’s conjecture: a survey and recent results, Journal of Graph Theory,2012 [RI72]. This survey is the best top cited article published in Journal of Graph Theory for years2012-2013:http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291097-0118/homepage/MostCited.html

Best Papers– DISC 2011 (Corentin Travers et al.): Locality and Checkability in Wait-Free Computing [CI115]– ICALP 2013, track C (Adrian Kosowski et al.): Fast Collaborative Graph Exploration [CI94]– PODC 2010 (Adrian Kosowski et al.): How to meet when you forget: log-space rendezvous in arbitrarygraphs (presented at Best Paper Session)

http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291097-0118/homepage/MostCited.html


Editorial and organizational activities

Steering committee (international)– M. Bouvel, member of the Steering Committee of the series of Conferences Permutation Patterns, since2012

– C. Gavoille, member of the Steering Committe of the International ACM Symposium on Principles ofDistributed Computing (PODC), 2009-2011

– R. Klasing, member of the Steering Committee of the International Colloquium on Structural Informationand Communication Complexity (SIROCCO), since 2011

Journal editorial board (international)– O. Beaumont, Associate Editor, IEEE Transactions on Parallel and Distributed Systems, TPDS (sinceJune 2010)

– M. Bousquet-Mélou, Editor for Journal of Combinatorial Theory, Series A (since 2001)– M. Bousquet-Mélou, Editor for Advances in Applied Mathematics (since 2000)– M. Bousquet-Mélou, Associate Editor for the Electronic Journal of Combinatorics (since 2013)– M. Bousquet-Mélou, Editor for the Séminaire Lotharingien de Combinatoire (since 2007)– M. Bousquet-Mélou, Editor for the Annales de l’IHP D : Combinatorics, Physics and their Interactions(since 2013)

– M. Bouvel, Guest editor for the special issue of the Journal of Combinatorics dedicated to the conferencePermutation Patterns (2013)

– R. Klasing, Associate Editor for Algorithmic Operations Research (since 2007)– R. Klasing, Associate Editor for Parallel Processing Letters (since 2007)– R. Klasing, Associate Editor for Networks (since 2007)– R. Klasing, Associate Editor for Computing and Informatics (since 2008)– R. Klasing, Associate Editor for Theoretical Computer Science (since December 2009)– R. Klasing, Associate Editor for Fundamenta Informaticae (since January 2010)– R. Klasing, Associate Editor for Discrete Applied Mathematics (since February 2010)– R. Klasing, Associate Editor for Wireless Networks (since May 2010)– R. Klasing, Associate Editor for Journal of Interconnection Networks (since November 2010)– A. Kosowski, Guest editor for the special issue of Theoretical Computer Science dedicated to the conferenceSIROCCO 2011

– A. Kosowski, Guest editor for Computing and Informatics (2011)– J.-F. Marckert, Associate Editor for Annals of Applied Probability (since 2013)– Y. Métivier, Editor for RAIRO Theoretical Informatics and Applications (since 2000)– E. Sopena, Editor for Discussionnes Mathematicae Graph Theory (since 2013)– A. Zvonkine, Associate editor, Kyungpook Mathematical Journal (since 2007)

Chair of program committee (international)– O. Beaumont, ICPP 13 (vice chair Algorithms Track), Lyon, France, 2013– O. Beaumont, IPDPS 11 (vice chair Algorithms Track), Anchorage, USA, 2011– M. Bousquet-Mélou, Formal Power Series and Algebraic Combinatorics (FPSAC) 2011, Reykjavik, Iceland,co-chair

– M. Bousquet-Mélou, Analysis of Algorithms (AofA) 2014, Paris, co-chair– Ph. Duchon, GASCom conference, 2012, Bordeaux, chair– C. Gavoille, International Colloquium on Automata, Languages and Programming, ICALP 2010, Bordeaux,co-chair

– C. Gavoille, Annual ACM Symposium on Principles of Distributed Computing, PODC 2011, San Jose,USA, general chair


– D. Ilcinkas, DYNAS 2010 (2nd International Workshop on DYnamic Networks: Algorithms and Security)- cochair

– C. Johnen, Chairpersonn of “self-stabilizing” track of SSS 2011, 13th Symposium on Stabilization, Safety,and Security of Distributed Systems, Grenoble, France, 2011

– R. Klasing, Bordeaux Workshop on Identifying Codes (BWIC 2011), Bordeaux, France, 2011, chair– R. Klasing, 11th International Symposium on Experimental Algorithms (SEA 2012), Bordeaux, France,chair

– R. Klasing: SSS 2013 (Ad-hoc, sensor, robot and opportunistic networks Track), co-chair– A. Kosowski, SIROCCO 2011 (18th International Colloquium on Structural Information and Communi-cation Complexity) - cochair for organization, proceedings co-editor

– A. Kosowski, FCT 2015 (20th International Symposium on Fundamentals of Computation Theory) -cochair

– A. Raspaud, BGW2012 (Bordeaux Graph Workshop 2012), cochair– E. Sopena, BGW2012 (Bordeaux Graph Workshop 2012), cochair

Chair of program committee (national)– N. Hanusse, Algotel, 2012, La grande-motte, co-chair

Program committee (international)– F. Alexandre, program committee member of the conference for the Simulation of Adaptive Behavior, SAB2012

– F. Alexandre, program committee member of the Chilean Workshop on Pattern Recognition, CWPR 2012– F. Alexandre, program committee member of the IEEE conference for the Engineering in Medicine andBiology EMBS 2013

– J.-C. Aval, program committee member of FPSAC 2012, Formal Power Series and Algebraic Combinatorics,2012, Nagoya, Japan

– O. Beaumont, program committee member of IPDPS 2009, 2010, 2012, 2013, 2014– O. Beaumont, program committee member of SC 2014– O. Beaumont, program committee member of PODC 2010– O. Beaumont, program committee member of HIPC 2010– O. Beaumont, program committee member of ICPADS 2009– O. Beaumont, program committee member of ISCIS 2011, 2012, 2013, 2014– M. Bousquet-Mélou, SIAM Conference on Discrete Mathematics, Minneapolis, USA, June 2014– L. Eyraud-Dubois, program committee member of IPDPS 2011, 2013, 2014– L. Eyraud-Dubois, program committee member of HiPC 2013, 2014– C. Gavoille, International Workshop on Graph-Theoretic Concepts in Computer Science (WG), 2014– C. Gavoille, Annual ACM Symposium on Principles of Distributed Computing (PODC), 2014– C. Gavoille, IEEE International Parallel & Distributed Processing Symposium (IPDPS), 2014– C. Gavoille, Annual ACM Symposium on Principles of Distributed Computing (PODC), 2013– C. Gavoille, International Colloquium on Automata, Languages and Programming (ICALP), 2013– C. Gavoille, IEEE International Parallel & Distributed Processing Symposium (IPDPS), 2013– C. Gavoille, Symposium on Discrete Algorithms (SODA), 2013– C. Gavoille, International Symposium on Distributed Computing (DISC), 2012– C. Gavoille, International Symposium on Algorithms and Computation (ISAAC), 2012– C. Gavoille, International Conference on Distributed Computing and Networking (ICDCN), 2012– C. Gavoille, Annual European Symposium on Algorithms (ESA), 2011– C. Gavoille, International Conference on Principles of Distributed Systems (OPODIS), 2009– N. Hanusse, program commitee member of STACS 2011– N. Hanusse, program commitee member of Parallel Data Mining 2011


– D. Ilcinkas, program committee member of SIROCCO 2009 (16th International Colloquium on StructuralInformation and Communication Complexity)

– D. Ilcinkas, program committee member of DYNAS 2009 (1st International Workshop on DYnamic Net-works - Algorithms and Security)

– D. Ilcinkas, program committee member of DIALM-POMC 2010 (6th ACM SIGACT/SIGMOBILE Inter-national Workshop on Foundations of Mobile Computing)

– D. Ilcinkas, program committee member of DISC 2011 (25th International Symposium on DIStributedComputing)

– D. Ilcinkas, program committee member of ALGOSENSORS - Track B 2011 (7th International Symposiumon Algorithms for Sensor Systems, Wireless Ad Hoc Networks and Autonomous Mobile Entities)

– D. Ilcinkas, program committee member of FOMC 2012 (8th ACM SIGACT/SIGMOBILE InternationalWorkshop on Foundations of Mobile Computing)

– D. Ilcinkas, program committee member of OPODIS 2012 (16th International Conference On PrinciplesOf DIstributed Systems)

– D. Ilcinkas, program committee member of ADHOC-NOW 2013 (12th International Conference on AdHoc Networks and Wireless)

– D. Ilcinkas, program committee member of SIROCCO 2013 (20th International Colloquium on StructuralInformation and Communication Complexity)

– C. Johnen, program committee member of SSS 2013, 15th Symposium on Stabilization, Safety, and Securityof Distributed Systems, Osaka, Japan, November 2013

– R. Klasing, SIROCCO 2009, 16th International Colloquium on Structural Information and CommunicationComplexity, Piran, Slovenia, May 2009

– R. Klasing, MFCS 2009, 34th International Symposium on Mathematical Foundations of Computer Science,August 24-28, 2009, Novy Smokovec, High Tatras, Slovakia

– R. Klasing, ADHOC-NOW 2009, 8th International Conference on Ad hoc Networks and Wireless, Septem-ber 22-25, 2009, Murcia, Spain

– R. Klasing, OPODIS 2009, 13th International Conference on Principles of Distributed Systems, Nîmes,France, December 2009

– R. Klasing, STACS 2010, 27th International Symposium on Theoretical Aspects of Computer Science,March 4-6, 2010, Nancy, France

– R. Klasing, ALGOSENSORS 2010, 6th International Workshop on Algorithmic Aspects of Wireless SensorNetworks, July 2010, Bordeaux, France

– R. Klasing, IWOCA 2010, 21st International Workshop on Combinatorial Algorithms, July 26-28, 2010,London, United Kingdom

– R. Klasing, ADHOC-NOW 2010, 9th International Conference on Ad Hoc Networks and Wireless, August20-22, 2010, Edmonton, Canada

– R. Klasing, SIROCCO 2011, 18th International Colloquium on Structural Information and CommunicationComplexity, June 26-29, 2011, Gdansk, Poland

– R. Klasing, FOMC 2011, 7th ACM SIGACT/SIGMOBILE International Workshop on Foundations ofMobile Computing (formerly known as DIALM-POMC), June 9, 2011, San Jose, California, USA

– R. Klasing, ADHOC-NOW 2011, 10th International Conference on Ad Hoc Networks and Wireless, July18-20, 2011, Paderborn, Germany

– R. Klasing, IWOCA 2011, 22nd International Workshop on Combinatorial Algorithms, June 20-22, 2011,University of Victoria, Canada

– R. Klasing, ADHOC-NOW 2012, 11th International Conference on Ad Hoc Networks and Wireless, July9-11, 2012, Belgrade, Serbia

– R. Klasing, FOMC 2012, 8th ACM SIGACT/SIGMOBILE International Workshop on Foundations ofMobile Computing (formerly known as DIALM-POMC), July 19, 2012, Madeira, Portugal

– R. Klasing, IWOCA 2012, 23rd International Workshop on Combinatorial Algorithms, July 19-21, 2012,Kalasalingam University, Anand Nagar, Krishnankoil, Tamil Nadu, India


– R. Klasing, ALGOSENSORS 2013, 9th International Symposium on Algorithms and Experiments forSensor Systems, Wireless Networks and Distributed Robotics, September 5-6, 2013, Sophia Antipolis,France

– R. Klasing, ADHOC-NOW 2013, 12th International Conference on Ad Hoc Networks and Wireless, July8-10, 2013, Wrocław, Poland

– R. Klasing, FCT 2013, 19th International Symposium on Fundamentals of Computation Theory, Liverpool,United Kingdom, August 19-21, 2013

– R. Klasing, IWOCA 2013, 24th International Workshop on Combinatorial Algorithms, Rouen, France,July 10-12, 2013

– R. Klasing, SEA 2013, 12th International Symposium on Experimental Algorithms, June 5-7, 2013, Rome,Italy

– R. Klasing, IWOCA 2014, 25th International Workshop on Combinatorial Algorithms, October 15 - 17,2014, Minnesota, USA

– R. Klasing, ADHOC-NOW 2014, 13th International Conference on Ad Hoc Networks and Wireless, June22-27, 2014, Benidorm, Spain

– R. Klasing, WALCOM 2015, The 9th International Workshop on Algorithms and Computation, February26-28, 2015, Dhaka, Bangladesh

– A. Kosowski, programme committee member of DISC 2013 (27th International Symposium on DistributedComputing, Jerusalem, September 2013)

– A. Kosowski, programme committee member of COCOA 2013 (7th Annual International Conference onCombinatorial Optimization and Applications, Chengdu, December 2013)

– A. Kosowski, programme committee member of SSS 2013 (15th International Symposium on Stabilization,Safety, and Security of Distributed Systems, Osaka, November 2013)

– A. Kosowski, programme committee member of ADHOC-NOW 2013 (12th International Conference onAd Hoc Networks and Wireless, Wroclaw, July 2013)

– A. Kosowski, programme committee member of MFCS 2012 (37th International Symposium on Mathe-matical Foundations of Computer Science, Bratislava, August 2012)

– A. Kosowski, programme committee member of SSS 2012 (14th International Symposium on Stabilization,Safety, and Security of Distributed Systems, Toronto, September 2012)

– A. Kosowski, programme committee member of SEA 2012 (11th International Symposium on ExperimentalAlgorithms, Bordeaux, June 2012)

– A. Kosowski, programme committee member of ICDCN 2012 (13th International Conference on DistributedComputing and Networking, Hong Kong, January 2012)

– A. Kosowski, programme committee member of DISC 2011 (25th International Symposium on DistributedComputing, Rome, September 2011)

– A. Kosowski, programme committee member of SIROCCO 2011 (18th International Colloquium on Struc-tural Information and Communication Complexity, Gdańsk, June 2011)

– A. Kosowski, programme committee member of IMAGINE 2009 (International Workshop on Mobility,Algorithms, Graph Theory in Dynamic Networks, Piran, Slovenia, May 2009) – selection of invited speakers

– A. Kosowski, programme committee member of DYNAS 2009 and DYNAS 2010 (International Workshopon DYnamic Networks: Algorithms and Security)

– Y. Métivier, program committee member of SOFSEM 2015– A. Milani, program committee member of SIROCCO 2014 (21th International Colloquium on StructuralInformation and Communication Complexity)

– A. Milani, program committee member of ICDCN 2014 (15th International Conference on DistributedComputing and Networking)

– A. Milani, program committee member of OPODIS 2013 (17th International Conference on Principles ofDistributed Systems)

– A. Milani, program committee member of OPODIS 2012 (16th International Conference on Principles ofDistributed Systems)


– A. Milani, program committee member of ICDCN 2011 (12th International Conference on DistributedComputing and Networking)

– A. Milani, program committee member of CFSE 2011 (8th French Conference on Operating Systems)– A. Milani, program committee member of CSE 2011 (14th International Conference on ComputationalScience and Engineering)

– A. Pêcher, programme committee member of 9th ICGT 2014 (International Conference on Graph Theory)– A. Pêcher, programme committee member of BGW 2014 (Bordeaux Graph Workshop)– A. Pêcher, programme committee member of Roadef 2014– A. Raspaud, programme committee member of BGW 2012 (Bordeaux Graph Workshop)– A. Raspaud, programme committee member of BGW 2014 (Bordeaux Graph Workshop)– A. Raspaud, program committee member of Eurocomb’11 (European Conference on Combinatorics, GraphTheory and Applications 2011)

– A. Raspaud, program committee member of Eurocomb’13 (European Conference on Combinatorics, GraphTheory and Applications 2013)

– A. Raspaud, program committee member of COSI 2012, COSI 2013, COSI 2014 (Colloque sur l’Optimisationet les Systèmes d’Information)

– N. Rougier, International Conference on Artificial Neural Netorks (ICANN), 2014– E. Sopena, program committee member of G-COM 2011, IEEE/WIC/ACM International Workshop onGraphs and Complex Object Matching, 2011, Lyon, France

– E. Sopena, program committee member of Eurocomb’09 (European Conference on Combinatorics, GraphTheory and Applications 2009)

– E. Sopena, program committee member of Eurocomb’11 (European Conference on Combinatorics, GraphTheory and Applications 2011)

– C. Travers, program committee member of DISC 2013 (27th International Symp osium on DistributedComputing)

– C. Travers, program committee member of ICDCS 2013 (33rd International Conference on DistributedComputing Systems)

– C. Travers, program committee member of SIROCCO 2014 (21th International Colloquium on StructuralInformation and Communication Complexity)

– C. Travers, program committee member of Euro-PAR 2014 (19th International European Conference onParallel and Distributed Computing)

– A. Zvonkine, program committee member, Riemann Surfaces and Dessins d’Enfants, 2010, Castro Urdiales,Spain

Program committee (national)– F. Alexandre, program committee member of Conférence Francophone sur l’Apprentissage Automatique(CAp), 2012

– F. Alexandre, program committee member of Conférence Francophone sur l’Apprentissage Automatique(CAp), 2013

– N. Bonichon, program committee member of ALGOTEL 2012 (14èmes Rencontres Francophones sur lesAspects Algorithmiques des Télécommunications)

– C. Gavoille, Journées Doctorales en Informatiques et Réseaux (JDIR), 2010– C. Gavoille, Rencontres Francophones sur les aspects Algorithmiques des Télécommunications (AlgoTel),2010

– N. Hanusse, program commitee member of Algotel 2010, 2011– N. Hanusse, program commitee member of MARAMI 2011– D. Ilcinkas, program committee member of AlgoTel 2009 (11èmes Rencontres Francophones sur les AspectsAlgorithmiques des Télécommunications)

– D. Ilcinkas, program committee member of MARAMI 2010 (1ère Conférence sur les Modèles et l’Analysedes Réseaux : Approches Mathématiques et Informatique)


– D. Ilcinkas, program committee member of AlgoTel 2011 (13èmes Rencontres Francophones sur les AspectsAlgorithmiques des Télécommunications)

– D. Ilcinkas, program committee member of AlgoTel 2013 (15èmes Rencontres Francophones sur les AspectsAlgorithmiques des Télécommunications)

– A. Pêcher, programme committee member of Journées Graphes (2013)– A. Pêcher, programme committee member of Ecole Jeunes Chercheurs en théorie des graphes (2013)– C. Travers, program committee member of ALGOTEL 2013 (15th French symposium on ALGOrithmicaspects of TELecommunications)

– C. Travers, program committee member of ALGOTEL 2014 (16th French symposium on ALGOrithmicaspects of TELecommunications)

Chair of organizing committee (international)– Bordeaux Workshop on Identifying Codes (BWIC 2011), Bordeaux, France, 2011, R. Klasing, chair– 37th International Colloquium on Automata, Languages and Programming (ICALP 2010), July 2010,Bordeaux. (C. Gavoille was the Conference Co-Chair, R. Klasing was the Workshops Chair, N. Bonichonand L. Eyraud-Dubois were Publicity Chairs)

– 11th International Symposium on Experimental Algorithms (SEA 2012), Bordeaux, France, R. Klasing,chair

– NeuroComp, french annual meeting in computational neuroscience, Bordeaux, 2012, F. Alexandre, chair

Chair of organizing committee (national)– Robots & Corps conference, Nancy, 2012, N. Rougier, chair

Organizing committee (international)– Analysis of Algorithms 2014, Paris, M. Bousquet-Mélou– Analytic Combinatorics, in the memory of Ph. Flajolet, 2011, Paris, M. Bousquet-Mélou– Annual ACM Symposium on Principles of Distributed Computing (PODC), 2010, Zürich, C. Gavoille,treasurer

– Annual meeting of the CNRS GDR “Multi-electrodes”, Bordeaux 2013, F. Alexandre– Bordeaux Graph Workshop 18-28 November 2010, 21-24 November 2012, 19-22 November 2014 (every 2years since 2010), O. Baudon, N. Bonichon, O. Delmas, P. Dorbec, H. Hocquard, F. Kardos, R. Klasing,A. Pêcher, A. Raspaud, E. Sopena

– Bordeaux Workshop on Identifying Codes, Bordeaux, 2011, O. Delmas, P. Dorbec, F. Foucauld, R. Klasing,M. Montassier, A. Pêcher, A. Raspaud, G. Renault, É. Sopena, P. Valicov

– Enumerative Combinatorics, 2014, Oberwolfach, M. Bousquet-Mélou– European Conference on Combinatorics, Graph Theory and Applications (EuroComb2009) Bordeaux,7-11th September 2009 - Mireille Bousquet-Melou, Robert Cori, Olivier Delmas, Philippe Duchon, RalfKlasing, Mickaël Montassier, Arnaud Pêcher, André Raspaud, C. Gavoille

– GASCOM, Génération aléatoire de structures combinatoires et Journée G.X. Viennot, 2012, Bordeaux.M. Bousquet-Mélou, M. Bouvel, R. Cori, JG. Penaud, D. Renault, A. Zemmari

– Permutation Patterns 2013, Paris, M. Bouvel– SIROCCO 2011, 18th International Colloquium on Structural Information and Communication Complex-ity, Gdansk, Poland, A. Kosowski

– Toward Evolutive Routing Algorithms for scale-free/internet-like NETworks (TERA-NET), 2010, Bor-deaux, C. Gavoille

– Workshop Cycles and Colourings, Nový Smokovec, Slovakia, 9-14 September 2012, 8-13 September 2013,7-12 September 2014, F. Kardos

– 2nd Workshop TERANET 2011 (Toward Evolutive Routing Algorithms for scale-free/internet-like NET-works), Rome, Italy, September 19, 2011, D. Ilcinkas

Organizing committee (national)– Journées ALEA 2013, Cirm, Luminy, A. Boussicault, M. Bouvel, V. Féray


– Sage-Combinat Days 57, Cernay-La-Ville, A. Boussicault, Vincent Delecroix– Journées combinatoires de Bordeaux, annually since 2009, J.-C. Aval, J.-F. Marckert– Journées en l’honneur de Robert Cori, Bordeaux, 2009. M. Bousquet-Mélou, Y. Le Borgne– 8èmes Journées francophones sur les Entrepôts de Données et l’Analyse en ligne (EDA’12), Bordeaux. S.Maabout, M. Mosbah, A. Zemmari

– School of Graph Theory, St Pierre d’Oléron, 2013, P. Dorbec, A. Pêcher, É. Sopena

Research animation (international)– Young Scientists Academy of the Polish Academy of Sciences (A. Kosowski)

Research animation (national)– Conseil scientifique de l’INSMI (Institut national des sciences mathématiques et de leurs applications,CNRS) (M. Bousquet-Mélou)

– Conseil scientifique de la FSMP (Fondations des sciences mathématiques de Paris) (M. Bousquet-Mélou)– Co-Head of the “Graphs” group within the GDR Informatique Mathématique 2010-2013 (A. Pêcher)– Co-Head of the COA group within the GDR Informatique Mathématique since 2012 (C. Gavoille)– Head of the “Algorithms and Combinatorics” group within the GDR Informatique Mathématique (Sopena)– Member of the Cocor ALLISTENE alliance– Scientific Deputy of Inria Bordeaux Sud-Ouest, 2010- (O. Beaumont)

Service as expert or evaluator

Membership in expert committee (international)– Hiring committee for an assistant professor position in Mathematics, University of Geneva, 2012 (M.Bousquet-Mélou)

Membership in expert committee (national)– AERES expert for the LIGM, Marne-la-Vallée (M. Bousquet-Mélou, 2013)– AERES expert for the LIPN, Paris Nord (Ph. Duchon, 2012)– AERES expert for the LIX, Polytechnique (Y. Métivier, 2014)– AERES expert for the LITA, Metz University (N. Hanusse, 2011)– AERES expert for the LRI, Paris XI University (N. Hanusse, 2013)– AERES expert for the LIFO, Orléans, (C. Gavoille, 2010)– AERES expert for the LINA, Nantes, (C. Gavoille, 2010)– AERES expert for the PRISM, Versailles (C. Gavoille, 2013)– Expert for the National PES 27e committee (C. Gavoille, 2010-2013)– Hiring committee for an assistant professor and full professor positions in Mathematics and ComputerScience, Bordeaux, 2009, 2012 (M. Bousquet-Mélou)

– Hiring committee for an assistant professor position in Computer Science, Marne la Vallée, 2009 (M.Bousquet-Mélou)

– Hiring committee for an assistant professor position in Mathematics, University of Toulouse, 2012 (J.-F.Marckert)

– Hiring committee for an assistant professor position in Mathematics, University of Bordeaux, 2011 (J.-F.Marckert)

– Hiring committee for an assistant professor position in Computer science, University of Bordeaux, 2012(J.-F. Marckert)

– Hiring committee for an assistant professor position in Computer Science, University of Evry (R. Klasing,2010)

– Hiring committee for an assistant professor position in Mathematics, University Paris 6 (M. Bouvel, 2012)– Hiring committee for an assistant professor position in Computer Science, University Paris-Est Marne-La-Vallée (V. Féray, 2010-2012-2013)


– Hiring committee for an assistant professor position in Mathematics, University of Caen (V. Féray, 2012)– Member of recruitment committee of associated professor, University of Picardie, France (C. Johnen)– Member of the scientific committee of the CNRS PEPS program (F. Alexandre, 2012 and 2013)– Member of recruitment committee of associate professor, Université d’Aix-Marseille, France (D. Ilcinkas,2012)

– Member of “Commission Nationale PES” (E. Sopena, 2009, 2010, 2012)– Member of the Evaluation Committee of the programme “ANR DEFIS” (R. Klasing, 2009)– Member of the section 27 (Computer Science) of the National Council of Universities CNU (Y. Métivier,since 2012)

– Member of the section 27 (Computer Science) of the National Council of Universities CNU (O. Baudon,since 2012)

– Member of the section 27 (Computer Science) of the National Council of Universities CNU (N. Bonichon,since 2012)

– Member of the section 27 (Computer Science) of the National Council of Universities CNU (E. Sopena,2009-2012)

Individual expert (reviewer) (international)– Expert for the NSA Mathematical Sciences Grants Program 2013 (M. Bousquet-Mélou)– Expert Fond Recherche Quebec (F. Alexandre, 2012)– Expert Swiss National Science Foundation (SNSF) (O. Baumont, 2012)– External reviewer for NSERC/CRSNG (Canada) (P. Dorbec, 2013)– Reviewer American Mathematical Society (since 1995, Y. Métivier)– Reviewer of Application for tenure and promotion to Associate Professor, Memorial University of New-foundland, Canada (R. Klasing, 2010)

– Reviewer of Austrian Science Fund proposal, Austria (R. Klasing, 2014)– Reviewer of NSERC Discovery Grant, Canada (R. Klasing, 2010)– Reviewer of US-Israeli Binational Science Foundation (C. Gavoille, 2010)– Reviewer American Mathematical Society (since 1995, Y. Métivier)

Individual expert (reviewer) (national)– Expert ANR programme blanc (F. Alexandre, 2012)– Expert ANR programme blanc (P. Dorbec, 2013)– Expert ANR programme blanc (J.-C. Aval, 2010)– Expert ANR programme ARPEGE (O. Baumont, 2009)– Expert ANR programme ARPEGE (O. Baumont, 2010)– Expert ANR programme numériques (A. Pêcher, 2013)– Expert ANR programme Jeunes Chercheurs (R. Klasing, 2010)– Expert ANR programme Jeunes Chercheurs (A. Zvonkine, 2012)– Expert ANR programme Jeunes Chercheurs (A. Zvonkine, 2013)– Expert ANRT Cifre (A. Pêcher, 2013)– Expert Digiteo-DigiCosme proposal (R. Klasing, 2013)– Expert ITMO ‘Neurosciences, Sciences Cognitives, Neurologie, Psychiatrie (F. Alexandre, 2013)– Expert Projets Emergence, Mairie de Paris (X. Viennot, 2011)

Membership in selection board– Jury du concours d’entrée des ENS, Informatique (Ph. Duchon, 2010-2012)– Jury du concours d’entrée des ENS, Informatique (A. Pêcher, depuis 2013)– Jury IUF junior (Y. Métivier, 2014)

Membership in prize jury


– Jury member of the National Prix Specif of PhD thesis Gilles Kahn (C. Gavoille, 2011-2013)

Reviewing of PhD or habilitation (international)– O. Beaumont, report on David Clarke’s PhD thesis, University College Dublin, Ireland, 2011– M. Bousquet-Mélou, Reviewer for Nick Beaton’s PhD Thesis, Melbourne, 2012– M. Bousquet-Mélou, Reviewer for Jonas Sjöstrand’s habilitation thesis, Stockholm, 2013– R. Cori, Reviewer for Luca Ferrari tesi, Bologna 2013– R. Cori, Reviewer for Pasquale Petrullo tesi, Potenza 2011– C. Gavoille, Reviewer PhD thesis of Amine Boutiche, Université des Sciences et de la Technologie HouariBoumédiène, Algérie, 2012

– C. Gavoille, Reviewer PhD thesis of Ittai Abraham, Jerusalem University, Israel, 2009– R. Klasing, Reviewer PhD thesis Georgios Georgiadis, Chalmers University, Sweden, 2010– R. Klasing, Reviewer PhD thesis Ville Junnila, University of Turku, Finland, 2011– J.-F. Marckert, reviewer Ph.D. thesis Janine Kühn, Frankfurt, 2013– J.-F. Marckert, reviewer Ph.D. thesis Thomas Feierl, Vienna, 2009– E. Sopena, report on Rebecca Milley’s PhD thesis, Dalhousie U., Canada, 2013– X. Viennot, Reviewer for Amel Kaouche PhD thesis, UQAM, Montreal, Canada, 2009

Reviewing of habilitation (national)– M. Bousquet-Mélou, reviewer for Sylvie Corteel’s Habilitation Thesis, Paris, 2010– M. Bousquet-Mélou, reviewer for Julien Clément’s Habilitation Thesis, Caen, 2011– M. Bousquet-Mélou, reader for Charles Bordenave’s habilitation Thesis, Toulouse, 2012– Ph. Duchon, reader, HDR thesis of O. Bodini, Paris 6, 2010– C. Gavoille, reviewer for Nicolas Nisse HDR, Nice Sophia-Antipolis University, 2014– N. Hanusse, Reviewer for Jean-Loup Guillaume HDR, Paris 6, 2012– C. Johnen, reader for Lelia Blin’s habilitation Thesis, Paris, november 2011– J.-F. Marckert, reviewer HDR thesis N. Curien, Paris 6 (math.), 2013– Y. Métivier, Reviewer for Devan Sohier HDR thesis, Versailles, 2013– A. Pêcher, reader, HDR thesis of Bertrand Jouve, Toulouse 2, 2009– A. Pêcher, reader, HDR thesis of Gautier Stauffer, Bordeaux (IMB), 2011– X. Viennot, reviewer for Paul Zinn-Justin’s Habilitation Thesis, Paris, 2009

Reviewing of PhD (national)– J.-C. Aval, reviewer and jury member of Robin Langer’s PhD thesis, Université Paris-Est Marne-la-Vallée,2013

– O. Beaumont, reviewer Ph.D thesis Damien Borgetto, IRIT Toulouse, 2013– O. Beaumont, reviewer Ph.D thesis Paul Renaud Goud, ENS Lyon, 2012– O. Beaumont, reviewer Ph.D thesis The Tung Nguyen, INP Toulouse, 2011– O. Beaumont, reviewer Ph.D thesis Francois Bonnet, University of Rennes, 2010– O. Beaumont, reviewer Ph.D thesis Gilles Tredan, University of Rennes, 2009– M. Bousquet-Mélou, reviewer for Adeline Pierrot’s PhD thesis, Paris 7, 2013– M. Bousquet-Mélou, reviewer for Guillaume Chapuy’s PhD thesis, École Polytechnique, 2009– Ph. Duchon, reviewer of Julien David’s PhD thesis, Paris Est, 2010– Ph. Duchon, reviewer of N. Le Scouarnec’s PhD thesis, INSA Rennes, 2010– Ph. Duchon, reviewer of Hervé Baumann’s PhD thesis, Paris Diderot, 2012– Ph. Duchon, reviewer of O. Roussel’s PhD thesis, Paris 6, 2012– C. Gavoille, reviewer for Heger Arfaoui PhD thesis, Université Paris-Diderot, 2014– C. Gavoille, reviewer for Mikaila Toko Worou PhD thesis, Université Nice Sophia-Antipolis, 2012– C. Gavoille, reviewer for Jean-François Couturier PhD thesis, Université Paul Verlaine, Metz, 2012


– C. Gavoille, reviewer for Mathieu Chapelle PhD thesis, Université d’Orléans, 2011– C. Gavoille, reviewer for Julien Robert PhD thesis, Ecole Normale Supérieure de Lyon, 2009– C. Gavoille, reviewer for Patricio Reyes PhD thesis, Université Nice Sophia-Antipolis, 2009– N. Hanusse, reviewer of Thomas Aynaud PhD thesis, University of Paris 6, 2011– N. Hanusse, reviewer of Mauricio Soto PhD thesis, University of Paris 7, 2011– C. Johnen, reviewer of Kudireti Abdurusul’s PhD thesis, University of Reims Champagne-Ardenne, 2011– C. Johnen, reviewer of Julien Clément’s PhD thesis, University of Paris-Sud, 2010– R. Klasing, reviewer of Patricio Reyes’s PhD thesis, University of Nice, 2009– R. Klasing, reviewer for Aline Parreau’s PhD thesis, University of Grenoble, 2012– R. Klasing, reviewer for Marwane Bouznif’s PhD thesis, University of Grenoble, 2012– J.-F. Marckert, reviewer Ph.D. thesis Jérémie Bettinelli, Paris 11, 2011– J.-F. Marckert, reviewer Ph.D. thesis Laurent Ménard, Paris 6, 2009– J.-F. Marckert, reviewer Ph.D. thesis Mathieux Roux, Caen, 2011– J.-F. Marckert, reviewer Ph.D. thesis Antoine Gerbaud,Grenoble, 2010– Y. Métivier, reviewer Ph.D. thesis Hichem Kenniche, Paris 13, 2011– Y. Métivier, reviewer for A. Gaillard’s PhD thesis, Polytechnique, 2009– A. Pêcher, reviewer Ph.D. thesis Alberto Costa, Ecole Polytechnique, 2012– A. Pêcher, reviewer Ph.D. thesis Gilles Baroin, Toulouse, 2011– A. Pêcher, reviewer Ph.D. thesis Jean-Noël Martin, Belfort-Montbéliard, 2010– A. Pêcher, reviewer Ph.D. thesis Jean-Christophe Gaudin, Toulon, 2009– A. Pêcher, reviewer Ph.D. thesis N. Roussel, Bordeaux/Kaohsiung (Taiwan), 2009– E. Sopena, reviewer Valentin Borozan’s PhD thesis, Paris-Sud, 2011– E. Sopena, reviewer Julien Lemoine’s PhD thesis, Lille 1, 2011– E. Sopena, reviewer Simon Modeste’s PhD thesis, Institut J. Fourier, 2012– E. Sopena, reviewer Amin Tahraoui’s PhD thesis, Lyon 1, 2012– E. Sopena, reviewer Leonardo Sampaio Rocha’s PhD thesis, Sophia Antipolis, 2012– X. Viennot, reviewer for Matthieu Josuat-Vergès’s PhD thesis, Université Paris-Sud, 2009– X. Viennot, reviewer for Anisse Kasraoui’s PhD thesis, Université Lyon, 2009

Membership of PhD/habilitation committee (international)– E. Sopena, jury member of Urban Larsson’s PhD thesis, Chalmers University, Goteborg, Sweden, 2013– E. Sopena, jury member of Amanda Montejano’s PhD thesis, UPC, Barcelona, Spain, 2009

Membership of PhD/habilitation committee (national)– J.-C. Aval, jury member of Jean-Paul Bultel’s PhD thesis, Université Paris-Est Marne-la-Vallée, 2011– J.-C. Aval, jury member of Viviane Pons’s PhD thesis, Université Paris-Est Marne-la-Vallée, 2013– J.-C. Aval, jury member of Sandrine Dasse-Hartaut’s PhD thesis, Université Paris 7 Denis Diderot, 2014– M. Bousquet-Mélou, Jury member for Basile Morcrette’s PhD thesis, Paris 6/INRIA, 2013– M. Bousquet-Mélou, Jury member for Vincent Pilaud’s PhD thesis, Université P. et M. Curie and Univer-sidad de Cantabria, 2010

– P. Dorbec, jury member of Marwane Bouznif’s PhD thesis, Université Joseph Fourier, Grenoble, 2012– Ph. Duchon, Jury member of Jean Fromentin’s PhD thesis, Caen, 2009– Ph. Duchon, Jury member of M. Bouvel’s PhD thesis, Paris Diderot, 2009– Ph. Duchon, Jury member of Alexis Darasse’s PhD thesis, Paris 6, 2010– Ph. Duchon, jury member of Émilie Coupechoux’s PhD thesis, Paris Diderot, 2012– Ph. Duchon, jury member of Hanane Tafat Bouzid’s PhD thesis, Paris Nord, 2012– C. Gavoille, jury member of Arnaud Masmay PhD thesis, Ecole Normale Supérieure de Paris, 2014– C. Gavoille, jury member of Nicolas Delfosse PhD thesis, Université de Bordeaux, IMB, 2012


– C. Gavoille, jury member of Jean Daligault PhD thesis, 07/2011, Université de Montpellier– D. Ilcinkas, jury member of Ronan Pardo Soares’s PhD thesis, Université Nice Sophia Antipolis– C. Johnen, Jury member of Stéphane Rovedakis’s PhD thesis, University of Evry Val d’Essonne, 2010– R. Klasing, jury member for Cristiana Gomes’s PhD thesis, University of Nice, 2009– R. Klasing, jury member for Zohir Bouzid’s PhD thesis, University Paris 6, 2013– J.-F. Marckert, Jury member Ph.D. thesis Jérémie Lumbroso, Paris 6, 2012– Ph. Narbel, jury member for P. Wang’s PhD thesis, Universite Paris 6, 2012– A. Pêcher, jury member Ph.D. thesis Alberto Passuelo, Bordeaux (IMB), 2013– A. Pêcher, jury member Ph.D. thesis Pierre Aboulker, Paris, 2013– A. Pêcher, jury member Ph.D. thesis Laurent Gely, Bordeaux (IMB), 2010– A. Raspaud, Jury member Ph.D. thesis N. Roussel, Bordeaux/Kaohsiung (Taiwan), 2009– E. Sopena, jury member Simon Viennot’s PhD thesis, Lille 1, 2011– X. Viennot, Jury member for Samuele Giraudo’s PhD thesis, Université Paris-Est Marne-la-Vallée, 2011

Scientific collaborations

Projects (international)– CNRS-Cofipra (India) Associate team, F. Alexandre– CNRS-Oxford collaboration Scheme; 2012, M. Bousquet-Mélou– DYNAMO ; European COST Action ; 2005-2009– EcoSud 2013-2015, France/Argentine Clermont-Bordeaux-Rosario, A. Pêcher– Emerging Project with the University of Perugia, Italy ; 2011– EULER ; European project FP7 STREP ; 2010-2014– GraTel-2010-2013, France/Taiwan-Bordeaux-Taipei-Kaoshiung, A. Pêcher-A. Raspaud– Inria-Chile Collaboration, F. Alexandre– LIA LIRCO 2011-2014, Université de Québec à Montréal, Canada, JC. Aval– Microsoft Research SVC consulting, Montainview, USA, 2010, C. Gavoille– Multicomputing ; Programme “FitScience” (France-Israël) ; 2008-2010– PHC Polonium 2010-2011, University AGH Krakow - Pologne– PHC Proteus 2012-2013, University of Maribor, Slovenia, P. Dorbec– PHC Stefanik 2014-2015, Pavol Jozef Safarik University, Kosice, Slovakia, F.Kardos– PICS 2014-2016, GraphPar - Graph Partition LaBRI-PRiSM-U. Zielona Gora-AGH University– SERENE ; Royal Society Grant with the University of Liverpool, UK ; 2011-2013

Projects (national)– A3 ; ANR Blanc ; 2009-2012– ALADDIN ; ANR Blanc ; 2007-2011– DISPLEXITY ; ANR Blanc ; 2012-2015– DORSO ; ANR Jeunes Chercheurs ; 2011-2015– EGOS, ANR Jeunes Chercheurs ; 2012-2015– IDEA ; ANR program “défis” ; 2009-2012– MARS ; ANR Blanc ; 2007-2010– PSYCO ; ANR Jeunes Chercheurs ; 2011-2014– SONGS ; ANR INFRA ; 2012-12016– USS-SIMGRID ; ANR ; 2008-12012

Joint publications (international)– I. Abraham, Microsoft Research SVC (USA), co-publication, C. Gavoille– M. Albert; University of Otago (New-Zealand); co-publication, M. Bousquet-Mélou


– Michael H. Albert, Mike D. Atkinson, University of Otago (New Zealand), co-publication, M. Bouvel– A. Asinowski, G. Barequet, T. Mansour, R. Pinter; Technion, Haifa (Israel); co-publication, M. Bousquet-Mélou

– H. Attiya; Technion, Haifa, Israel; co-publications, A. Milani– I. Bárány, Hungarian Academy of science, and M. Reitzner, Universität Osnabrück (Germany), co-publication, J.-F. Marckert

– N. Beaton, R. Brak, J. de Gier, T. Guttmann; University of Melbourne (Australia); co-publication, M.Bousquet-Mélou

– Petra Berenbrink, Simon Fraser University, Burnaby, Canada, co-publications, R. Klasing, A. Kosowski– François Bergeron, UQAM, Montréal, Canada, co-publications, J.-C. Aval– Abdelhafid Berrachedi, Univ Algiers, Algeria, co-publications, E. Sopena– Davide Bilo, University of Sassari, Italy, co-publications, R. Klasing– Oleg Borodin, Sobolev Institute of Mathematics,Novosibirsk, Russia, co-publications, A. Raspaud– B. Bresar, Univ. Maribor, Slovenia, co-publications, P. Dorbec– Y.B. Chan, University of Brisbane (Australia), co-publication J.-F. Marckert, T. Selig– Gerard Chang, National Taiwan University (Taipei, Taiwan), co-publications “graphs and applicationsgroup”

– Gerard Chang, National Taiwan University, Taipei, Taiwan, co-publications, A. Raspaud– Cédric Chauve, Marni Mishna, Simon Fraser University (Canada), co-publication, M. Bouvel– S. Chechik, Weizmann Institute (IL), co-publication, C. Gavoille– Min Chen, Normal Zhejiang University,Jinhua, RPC, co-publications, A. Raspaud– A. Claesson, M. Dukes, S. Kitaev, University of Iceland/ of Reykjavik (Iceland) ; co-publication, M.Bousquet-Mélou

– Anders Claesson, Mark Dukes, University of Strathclyde (Scotland, UK), co-publication, M. Bouvel– Colin Cooper and Tomasz Radzik (King’s College London, UK), co-publications, D. Ilcinkas, R. Klasing,A. Kosowski

– J. Czap, Technical University of Kosice (Slovakia), co-publications, F. Kardos– Jurek Czyzowicz, Andrzej Pelc (Université du Québec, Canada), co-publications, D. Ilcinkas, R. Klasing,A. Kosowski

– Michele D’Adderio (Université Libre de Bruxelles, Belgique), co-publications, J.-C. Aval, Y. Le Borgne– Dariusz Dareniowski, Gdansk University of Technology, Poland, co-publications, R. Klasing– Yann Disser and Peter Widmayer’s group (ETH Zürich, Switzerland), co-publication, A. Kosowski– Mark Dukes ( University of Strathclyde, Glasgow, UK), co-publications, J.-C. Aval, Y. Le Borgne– H. Duminil-Copin; University of Geneva (Switzerland); co-publication, M. Bousquet-Mélou– F. Ellen; University of Toronto, Canada; co-publication, A. Milani– Robert Elsässer, University of Salzburg, Austria, co-publications, O. Beaumont– R. Erman, M. Krnc, B. Luzar, R. Skrekovski, Univ Ljubljana (Slovenia), co-publications, F. Kardos– P. Fatourou; Fondation For Research and Technology (FORTH), Crete, Greece; co-publication, A. Milani– A. Fernandez Anta, Institute IMDEA Networks, Madrid, Spain; co-publications, A. Milani– Luca Ferrari, University of Florence (Italy), co-publication, M. Bouvel– Adriano Garsia, UCSD, San Diego, California, USA, co-publications, JC. Aval– Leszek Gasieniec (University of Liverpool, UK), co-publications, D. Ilcinkas, R. Klasing, A. Kosowski– A. Ghatpande, H. Nakazato and H. Watanabe (Waseda University, Tokyo), co-publications, O. Beaumont– W. Goddard, Clemson University, South Carolina, USA, co-publication, P. Dorbec– I. Goulden ; University of Waterloo (Canada) ; co-publication, V. Féray– A. Gupta, Carmegie Mellon University (USA), co-publication, C. Gavoille– Gena Hahn, Université de Montreal , Canada, co-publications, A. Raspaud– B. Hartnell, St Mary’s Univ., Nova Scotia, Canada, co-publications, P. Dorbec


– M.A. Henning, Univ. Johannesburg, South Africa, co-publications, P. Dorbec– Gabor Hetyei, Univ Carolina, Charlotte., United States, co-publication, R. Cori– Angela Hicks (post doc at Stanford, Californie, USA), co-publications, J.-C. Aval, Y. Le Borgne– Lisa Higham, University of Calgary (Canada) , co-publication, C. Johnen– I. Honkala, Univ. Turku, Finland, co-publication, P. Dorbec– Juraj Hromkovič, ETH Zürich, Switzerland, co-publications, R. Klasing– D. Hudak, S. Jendrol, J. Katrenic, J. Miskuf, G. Semanisin, R. Sotak, Pavol Jozef Safarik University inKosice (Slovakia), co-publications, F. Kardos

– Anna Ivanova, Yakutsk State University, Yakutsk, Russia, co-publications, A. Raspaud– P.K. Jha, St. Cloud’s State Univ., Minnesota, USA, co-publication, P. Dorbec– Kamal Kabyl, Univ Béjaia, Algeria, co-publications, E. Sopena– T. Kaiser, Katedra matematiky, Plzen, Czech Republic, co-publication, P. Dorbec– Rafal Kalinowski (AGH University, Krakow Poland), co-publications, O. Baudon, J. Bensmail– D. Kral and J. Volec, University of Warwick (UK), co-publications, F. Kardos– Hye Kyung Kim, Catholic Univ. of Daegu, Kyongsan (Republic of Korea), co-publication, P. Dorbec– Sandi Klavžar, Univ. Ljubljana, Slovenia, co-publication, P. Dorbec– Miroslaw Korzeniowski, Wroclaw University of Technology, co-publications, O. Beaumont– William F. Klostermeyer, Univ North Florida, Jacksonville, USA, co-publications, A. Raspaud, E. Sopena– Gašper Košmrlj, Univ. Ljubljana, Slovenia, co-publication, P. Dorbec– Evangelos Kranakis (Carleton University, Canada), co-publications, A. Kosowski– L. Kuszner, University of Gdansk (POL), C. Gavoille– Sergei Lando (Higher School of Economics and Independent University of Moscow, Moscow, Russia),co-publication A. Zvonkine

– M. Lohrey, E. Noeth, Universität Leipzig (Germany) ; co-publication, M. Bousquet-Mélou– Z. Lotker, Ben-Gurion University (IL), C. Gavoille– Christian Löwenstein, Ulm Univ., Germany, co-publication, P. Dorbec– Edita Macajova, Comenius University, Bratislava, Slovaquie, co-publications, A. Raspaud– Gary MacGillivray, Univ Victoria, Victoria, Canada, co-publications, A. Raspaud, E. Sopena– D. Malkhi, Microsoft Research SVC (USA), co-publication, C. Gavoille– S. Maneth, University of Edimburg (Scottland) ; co-publication, M. Bousquet-Mélou– M. Markiewicz, University of Gdansk (POL), C. Gavoille– Antoni Marzyk (AGH University, Krakow Poland), co-publications, O. Baudon, J. Bensmail– George B. Mertzios, University of Durham, UK, co-publications, R. Klasing– F. Meyer auf der Heide, University of Paderborn (GER), co-publication, C. Gavoille– M. Mishna, Simon Fraser University (Canada) ; co-publication, M. Bousquet-Mélou– Tobias Mömke, KTH Royal Institute of Technology, Stockholm, Sweden and Unviersity of Saarland,Saarbrücken, Germany, co-publications, R. Klasing

– Amanda Montejano, Univ Mexico, Mexico, co-publications, E. Sopena, A. Raspaud– A. Navarra, University of Rome “Sapienza”, C. Gavoille– O. Neiman, Ben-Gurion University (IL), co-publication, C. Gavoille– Fedor Pakovich (Ben Gurion University of the Negev, Beer Sheva, Israel), deux co-publications A. Zvonkine– Adrian Palacios, University of Valparaiso (Chile), co-publication, F. Alexandre– B. Patt-Shamir, Tel-Aviv University (IL), co-publication, C. Gavoille– A. Pelc, University of Quebec (CAN), C. Gavoille– D. Peleg, Weizmann Institute (IL), C. Gavoille– Ljubomir Perkovic (DeP. University, Chicago, USA), co-publications, N. Bonichon, C. Gavoille, N. Hanusse– L. Perkovic, DePaul University (USA), co-publication, C. Gavoille


– Joseph G. Peters, Simon Fraser University, Burnaby, Canada, co-publications, R. Klasing– Monika Pilsniak (AGH University, Krakow Poland), co-publications, O. Baudon, F. Foucaud, J. Bensmail– Cristina M. Pinotti, Alfredo Navarra and Gabriele Di Stefano (University of Pisa / University of Perugia,Italy), co-publications, R. Klasing, A. Kosowski

– L.-F. Préville-Ratelle; UQAM, Montréal (Canada); co-publication, M. Bousquet-Mélou– L.-F. Préville-Ratelle; U. Talca (Chile), co-publication, X. Viennot– Guido Proietti, University of L’Aquila, Italy and CNR, Rome, Italy, co-publications, R. Klasing– J. Propp; UMass Lowell (USA); co-publication, M. Bousquet-Mélou– Jakub Przybylo (AGH University, Krakow Poland), co-publications, O. Baudon, F. Foucaud, J. Bensmail– J. Pykacz, University of Gdansk (POL), C. Gavoille– Douglas Rall, Furman’s Univ., South Carolina, USA, co-publication, P. Dorbec– Ivan Rapaport (University of Chile), co-publications, A. Kosowski– V. Reiner ; University of Minnesota (USA) ; co-publication, V. Féray– Edita Rollova, Univ West Bohemia, Plzen, Czech Republic, co-publications, E. Sopena– A. Rosenberg (University of Massachusetts Amherst), co-publications, O. Beaumont– Nik Ruskuc, University of Saint Andrews (Scotland, UK), co-publication, M. Bouvel– Thomas Sauerwald (University of Cambridge, UK and MPII Saarbrücken, Germany), co-publication, R.Klasing, A. Kosowski

– C. Scheideler, University of Paderborn (GER), co-publication, C. Gavoille– I. Schiermeyer, Tech. Univ. Freiberg (Germany), co-publication, F. Kardos– Domenico Senato, Univ Potenza, Basilicate., Italy, co-publication, R. Cori– Martin Skoviera, Comenius University, Bratislava, Slovaquie, co-publications, A. Raspaud– P. Śniady ; University of Wrocław(UK) ; co-publication, V. Féray– C. Sommer, MIT (USA), co-publication, C. Gavoille– P. Spirakis, Patras University (GRE), C. Gavoille– Karol Suchan (Universidad Adolfo Ibáñez, Chile), co-publications, A. Kosowski– K. Talwar, Microsoft Research SVC (USA), co-publication, C. Gavoille– Li-Da Tong, Sun Yat-sen University, Kaohsiung, Taiwan, co-publications, A. Raspaud– A. Twigg, Oxford University (UK), C. Gavoille– T. Tylec, University of Gdansk (POL), C. Gavoille– C. Ulcigrai, Bristol (UK) ; co-publication, V. Delecroix– Vince Vatter, University of Florida (USA), co-publication, M. Bouvel– Haichao Wang, Shanghai University of Electric Power, China, co-publication, P. Dorbec– Weifan Wang, Normal Zhejiang University, Jinhua, RPC, co-publications, A. Raspaud– K. Weller; Oxford (UK); co-publication, M. Bousquet-Mélou– J. West, Bristol (UK) ; co-publication, M. Bousquet-Mélou– Mariusz Wozniak (AGH University, Krakow Poland), co-publications, O. Baudon, F. Foucaud, J. Bensmail– Weiliang Zhao, Zhejiang Industry Polytechnic College, Shaoxing,China, co-publication, P. Dorbec– U. Wieder, Microsoft Research SVC (USA), co-publication, C. Gavoille– Xuding Zhu, Zhejiang Normal University (Jinhua, China), co-publication “graphs and applications group”

Research visitors (international)– M. Albert ; Otago University (New-Zealand) ; 2012 (1 month)– S. Alstrup, University of Copenhagen (DK), 2014 (1 week)– Petra Berenbrink, Simon Fraser University, Burnaby, Canada, 22/10-26/10/2013– F. Bergeron, Montréal, Canada. 2010 (1 month)– S. Bianchi ; Rosario University (Argentina) ; 2013 (1 month)– Davide Bilo, University of L’Aquila, Italy 30/08-15/09/2010


– A. Bogatyrev, Institute of Numerical Mathematics of the Russian Academy of Scencies, Moscow (Russia),2012 (1 month)

– J. Bose, Carleton University (CAN), 2013 (1 week)– Colin Cooper, King’s College London, UK 1 month in 2008– Jurek Czyzowicz, Université du Québec, Canada 1 month in 2010– M. d’Adderio, Max Planck Institut (Bonn, Allemagne), 2012 (1 month)– Dariusz Dareniowski, Gdansk University of Technology, Poland, 08/06 – 28/06/2012– Y. Dieng, University of Ziguinshor (SEN), 2011-2013 (2 month)– F. Ellen; University of Toronto (Canada) ; 2013 (1 month)– Robert Elsässer, University of Paderborn, Germany 31/08-12/10/2007– L.S. Ferrari, Université de Bologne (Italie), 2012 (1 month )– Leszek Gasieniec, University of Liverpool, UK 1 month in 2009– Gabor Hetyie, Univ. Carolina, Charlotte, United States, 2011 (1 month)– M. Josuat-Vergès, Vienna, Austria. 2010 (1 month)– T. Kaiser; Univ. West Bohemia, Pilsen (Czech Republic), 2010 (1 month)– Samia Kerdjoudj, USTHB , Alger, Algérie, 2014 (1 month)– Miroslaw Korzeniowski, Wroclaw University of Technology, Poland 6 months in 2012– Sandi Klavžar, Univ. Ljubljana, Slovenia, 2013 (1 month)– Miroslaw Korzeniowski, Wroclaw University of Technology, Poland 1.7.-29.7.2011– Gašper Košmrlj, Univ. Ljubljana, Slovenia, 2012-2013 (4 months)– George B. Mertzios, University of Durham, UK 17.6.-14.7.2012– M. Mishna ; Simon Fraser University (Canada) ; 2012-2013 (1 year)– Tobias Mömke, KTH Royal Institute of Technology, Stockholm, Sweden 17.7.-31.7.2011– A. Montejano, UNAM (Mexico), 2011 (1 month)– P. Nadeau, Vienne, Austria. 2010 (1 month)– F. Pakovich, Ben Gurion University of the Negev, Beer Sheva (Israel), 2010 (1 month)– F. Pakovich, Ben Gurion University of the Negev, Beer Sheva (Israel), 2014 (1 month)– L. Perkovic ; DeP. University (USA) ; 2012 (1 year)– Joseph G. Peters, Simon Fraser University, Burnaby, Canada, 24/01-24/02/2013– J. Przybylo ; AGH University (Poland) ; 2012 (15 days)– Tomasz Radzik, King’s College London, UK 1 month in 2008– A. Rattan, London, 2010 (1 month)– Thomas Sauerwald, MPI Saarbruecken, Germany 01/11-15/11/2010– I. Schiermeyer, Tech. Univ. Freiberg (Germany), 2011 (1 month)– O. Serra ; UPC Barcelona (Spain) ; 2013 (1 month)– E. Sidorowicz, U. Zielona Gora (Poland), 2011 (1 month)– B. Stevens ; Carleton University (Canada) ; 2013-2014 (1 year)– M. Wozniak ; AGH University (Poland) ; 2013 (1 month)

Research visitors (national)– N. Broutin, Inria Rocquencourt. 2010 (1 month)– É. Fusy, LIX, École polytechnique. 2011 (1 month)– P. Gambette, Institut de Mathématiques de Luminy. 2011 (1 month)– P. Méliot, Université de Marne-La-Vallée. 2011 (1 month)– Pascal Ochem; LRI; 2011 (1 week)– Petru Valicov; ENS Lyon; 2014 (1 week)

Research visits (international)


– J.-C. Aval, UQAM, Montréal, Canada, 2012 (2 weeks)– N. Bonichon, Univ. Ottawa Canada, 2013 (1 week)– M. Bousquet-Mélou, MSRI Berkeley 2012 (two weeks)– M. Bousquet-Mélou, Schrödinger Institute, Vienna 2014 (two weeks)– A. Boussicault, UQAM, Montréal, Canada, 2014 (2 weeks)– R. Cori, MSRI, Berkeley California, United States, 2012 (three weeks)– R. Cori, VIASM, Hanoi, Vietnam, 2013,(1 month)– P. Dorbec, Univ. Cochin, India, 2014 (two weeks)– V. Féray, Waterloo, 2010, (1 month)– D. Ilcinkas, Université du Québec en Outaouais, Gatineau, Canada, 2009 (1 week)– D. Ilcinkas, Université d’Ottawa, Ottawa, Canada, 2009 (1 week)– F. Kardos, University of Warwick, UK, 2014 (1 week)– F. Kardos, University of Ljubljana, Slovenia, 2014 (1 week)– J.-F. Marckert, Graz, 2009, (1 month)– F. Mazoit, University of Waterloo, 2009 (2 weeks)– F. Mazoit, University of Hamburg, 2013 (3 weeks)– A. Milani, University of Toronto, Canada, 2011 (two weeks)– A. Milani, Technion, Haifa, Israel, 2011 (two weeks)– A. Pêcher, National Sun Yat-sen University, Taiwan, 2009 (2 weeks)– A. Pêcher, National Taiwan University, Taiwan, 2011 (2*2 weeks)– A. Pêcher, Université Polytechnique de Catalogne, Spain, 2013 (1 week)– A. Pêcher, Indian Institute of Science, Bangalore, India, 2013 (1 week)– A. Raspaud, National Sun Yat-sen University, Taiwan, 2009 (2 weeks)– A. Raspaud, National Taiwan University, Taiwan, 2011 (2*2 weeks)– A. Raspaud, Normal Zhedjiang University, Jinhua, RPC 2012 (2 weeks)– A. Raspaud, Department of Mathematics, University of Illinois at Urbana Champaign, USA 2013 (2 weeks)– A. Raspaud, Department of Computer Science and Automaton, Indian Institute of Science, Bangaore,India, 2013 (2 weeks)

– N. Rougier, NII, Tokyo, Japan, 2011 (1 month)– X. Viennot, UQAM, Montreal, Canada, 2009 (1 week)– X. Viennot, Frutillar, Chile, 2009 (1 week)– X. Viennot, CMI, Chennai, India, 2010 (1 month)– X. Viennot, TIFR, Mumbai, India, 2010 (1 month)– X. Viennot, Universidad de Talca, Talca, Chile, 2010/2011 (2 months)– X. Viennot, Indian Institute of Science, Bangalore, India, 2012 (1 week)– X. Viennot, IIT Bombay, Mumbai, India, 2013 (1.5 month)– X. Viennot, TIFR, Mumbai, India, 2013 (2 weeks)– X. Viennot, Universidad de Talca, Talca, Chile, 2013/2014 (2 months)– X. Viennot, Valparaiso, Chile, 2014 (1 week)– X. Viennot, E. Schrödinger Institute, Vienna, Austria, 2014 (3 weeks)– A. Zvonkine, Ben Gurion University of the Negev, Beer Sheva, Israel, 2011 and 2014 (twice two weeks)


F.1.3 Involvement with social, economic and cultural actorsCollaborations with the industry

Industrial contracts– Alcatel-Lucent-Bell ; Compact Routing Scheme in Dynamic Networks ; 2009-2010– European project FP7 STREP ”EULER” (2010-2014)– Investissement d’Avenir SPEEDDATA (Distributed Data Mining Computing, with AT-Internet)– SIMID (Aeronautics; partners: Airbus, Dassault Aviation, Eurocopter, Equip’ aero Services, 2MoROSolutions, Vinci Consulting and the laboratories IMS and LaBRI)

General audience actions

Learned society, federation (national)– O. Baudon: Member of the Administrative Council of the Société informatique de France– E. Sopena: Member of the Administrative Council of the Société informatique de France

Scientific popularization, dissemination of scientific culture– F. Alexandre, Participation in the program “Science Publique” on the french national radio France Culture,2013

– N. Bonichon, Seminars in secondary schools for the mathematics week, 2014– M. Bousquet-Mélou, Presentation at the IREM (Institut de Recherche sur l’Enseignement des Mathéma-tiques) days, Bordeaux, May 2014

– A. Boussicault, Math.en.jeans, general audience workshops, 2013-2014– A. Boussicault, P. Dorbec, O. Guibert, Y. Le Borgne, E. Sopena: Animation of workshops MATh.en.JEANS– M. Bouvel, V. Féray, Participation in the associative projet Mat’les Vacances– P. Dorbec, Implementation of Maths à modeler, General audience workshops, 2012-2014– P. Dorbec, Math.en.jeans, General audience workshops, 2012-2014– P. Dorbec, Participation in the SIF congress, 2014– P. Dorbec et al., Animation of workshops Maths à Modeler en Aquitaine– V. Féray, Presentation at the Mathematical Park, IHP, novembre 2013– Y. Le Borgne, Café scientifique. Consulat de France à Vancouver, 2014– F. Mazoit, Math.en.jeans, General audience workshops, 2011-2012– N. Rougier, Café scientifique around robotics, Epinal, 2012– N. Rougier, Scientific movie festival, meeting with the general public, Nancy, 2012– N. Rougier, F. Alexandre, Neurosciences days (Lunéville, 2009)– N. Rougier, Participation in the project science-info-lycée– X. Viennot, Wide audience conference, with G. Duchamp violin (video) and M. Pig Lagos texts andtraduction, Olmue, Chile, December 2010

– X. Viennot, Conference at the Lycée Brizeux, Quimper, November 2011– X. Viennot, Conference at the Pope John-Paul II College of Education, Pondicherry, India, February 2012– X. Viennot, closing conference, Journées nationales de l’APMEP, with G. Duchamp violin, Metz, October2012

– X. Viennot, conference at the Lycée Victor-Louis, Talence, November 2012– X. Viennot, Wide audience conference, cycle “Science et société”, with G. Duchamp violin and M. PigLagos texts, Nancy, May 2013

– X. Viennot, Journées nationales de l’APMEP: animation of two workshops and presentation at the “soukdes maths”, with G. Duchamp violin, Marseille, October 2013

– X. Viennot, Wide audience conference, Cultural Center, Universidad de Talca„ with G. Duchamp violin(video) and M. Pig Lagos texts and traduction, Talca, Chile, December 2013


– X. Viennot, Conference for the students of Lycée Saint-Jean-Pied-de-Port, “Journées jeunes chercheurslycéens”, Université de Pau, Mars 2014

– X. Viennot, Conference for students of colleges and lycées of the national competition Kangourou, Paris,May 2014

– X. Viennot, Wide audience conference, French Institute Vienna, with G. Duchamp violin, C.Krattenthalerpiano and M. Pig Lagos texts, Vienna, June 2014

Publications for large audience– P. Dorbec, Article in Tangente éducation, 2013– N. Rougier, Production of a popular science poster explaining research in computer science, 2010– E. Sopena, Editor-in-Chief of 1024, bulletin of the ”Société informatique de France”– X. Viennot, Article dans Tangente, 2009

F.2. IMAGE AND SOUND 235

F.2 Image and Sound



[RI1] E. Abraham, A. Younus, C. Aguerre, P. Desbarats, and P. Mounaix, Refraction losses interahertz computed tomography, Optics Communications, 283 (2010), pp. 2050–2055.

[RI2] J. Allali, P. Ferraro, P. Hanna, C. Iliopoulos, and M. Robine, Toward a general frameworkfor polyphonic comparison, Fundamenta Informaticae, 97 (2009), pp. 331–346.

[RI3] L. Ammann, P. Barla, X. Granier, G. Guennebaud, and P. Reuter, Surface relief analysisfor illustrative shading, Computer Graphics Forum, 31 (2012), pp. 1481–1490.

[RI4] P. Barla, R. Vergne, and R. Fleming, Decomposing intensity gradients into information aboutshape and material, Journal of Vision, 13 (2013).

[RI5] Y. Baoguang, J. Feng, G. Guennebaud, and X. Liu, Packet-based hierarchal soft shadow map-ping, Computer Graphics Forum, 28 (2009), pp. 1121–1130.

[RI6] W. Baxter, P. Barla, and K.-I. Anjyo, Compatible embedding for 2d shape animation, IEEETransactions on Visualization and Computer Graphics, 15 (2009), pp. 867–879.

[RI7] W. Baxter, P. Barla, and K.-I. Anjyo, N-way morphing for 2d animation, Computer Animationand Virtual Worlds, 20 (2009).

[RI8] F. Berthaut, M. Desainte-Catherine, and M. Hachet, Interacting with 3d reactive widgets formusical performance, Journal of New Music Research, 40 (2011), pp. 253–263.

[RI9] J. Blanco-Rivero, M.-A. Aller, J. Arias, M. Ferrer, and G. Balfagón, Long-term portalhypertension increases the vasodilator response to acetylcholine in rat aorta. role of prostaglandin i2,Clinical Science, 117 (2009), pp. 365–374.

[RI10] S. Boyé, P. Barla, and G. Guennebaud, A vectorial solver for free-form vector gradient, ACMTransaction on Graphics, (2012).

[RI11] S. Boyé, G. Guennebaud, and C. Schlick, Least squares subdivision surfaces, Computer Graph-ics Forum (Proceedings of Pacific Graphics 2010), 29 (2010).

[RI12] L. Bonnet, F. Lotte, and A. Lécuyer, Two brains, one game: Design and evaluation of amulti-user bci video game based on motor imagery, IEEE Transactions on Computational Intelligenceand AI in games, 5 (2013), pp. 185–198.

[RI13] J. Boukhobza and P. Olivier, An efficient hierarchical dual cache system for nand flash memo-ries, International Journal of Digital Information and Wireless Communications (IJDIWC), 1 (2011),pp. 175–194.

[RI14] J. Boukhobza, P. Olivier, and S. Rubini, A scalable and highly configurable cache-aware hybridflash translation layer, Computers, 3 (2014), pp. 36–57.

[RI15] N. Brodu, F. Lotte, and A. Lécuyer, Exploring two novel features for eeg-based brain-computerinterfaces: Multifractal cumulants and predictive complexity, Neurocomputing, 79 (2012), pp. 87–94.

[RI16] A. Bugeau, M. Bertalmio, V. Caselles, and G. Sapiro, A comprehensive framework for imageinpainting, IEEE Transactions on Image Processing, (2010), pp. 2634 – 2645.


[RI17] A. Bugeau and P. Pérez, Detection and segmentation of moving objects in complex scenes, Com-puter Vision and Image Understanding, (2009).

[RI18] A. Bugeau, V.-T. Ta, and N. Papadakis, Variational exemplar-based image colorization, IEEETransactions on Image Processing, (2013).

[RI19] P. Bénard, A. Bousseau, and J. Thollot, State-of-the-art report on temporal coherence forstylized animations, Computer Graphics Forum, 30 (2011), pp. 2367–2386.

[RI20] P. Bénard, F. Cole, M. Kass, I. Mordatch, J. Hegarty, M. S. Senn, K. Fleischer,D. Pesare, and K. Breeden, Stylizing animation by example, ACM Transactions on Graphics, 32(2013), pp. 119:1–119:12.

[RI21] P. Bénard, A. Hertzmann, and M. Kass, Computing smooth surface contours with accuratetopology, ACM Transactions on Graphics, 33 (2014).

[RI22] P. Bénard, A. Lagae, P. Vangorp, S. Lefebvre, G. Drettakis, and J. Thollot, A dynamicnoise primitive for coherent stylization, Computer Graphics Forum, 29 (2010), pp. 1497–1506.

[RI23] F. Canezin, G. Guennebaud, and L. Barthe, Adequate inner bound for geometric modeling withcompact field function, Computer & Graphics (proceedings of SMI 2013), 37 (2013), pp. 565–573.

[RI24] J. Chen, G. Guennebaud, P. Barla, and X. Granier, Non-oriented mls gradient fields, Com-puter Graphics Forum, (2013).

[RI25] S. J.-S. Chen, I. Reinertsen, P. Coupé, C. X. B. Yan, L. Mercier, D. R. Del Maestro,and D. L. Collins, Validation of a hybrid doppler ultrasound vessel-based registration algorithm forneurosurgery., International Journal of Computer Assisted Radiology and Surgery, 7 (2012), pp. 667–85.

[RI26] P. Coupé, S. Eskildsen, J. Manjon, V. Fonov, J. Pruessner, M. Allard, and L. Collins,Scoring by nonlocal image patch estimator for early detection of alzheimer’s disease, Neuroimage:Clinical, 1 (2012), pp. 141–152.

[RI27] P. Coupé, S. F. Eskildsen, J. V. Manjón, V. Fonov, and D. L. Collins, Simultaneoussegmentation and grading of hippocampus for patient classification with alzheimer’s disease., Medicalimage computing and computer-assisted intervention : MICCAI ... International Conference on MedicalImage Computing and Computer-Assisted Intervention, 14 (2011), pp. 149–57.

[RI28] P. Coupé, S. F. Eskildsen, J. V. Manjón, V. Fonov, and D. L. Collins, Simultaneous seg-mentation and grading of anatomical structures for patient’s classification: application to alzheimer’sdisease., NeuroImage, 59 (2012), pp. 3736–47.

[RI29] P. Coupé, P. Hellier, C. Kervrann, and C. Barillot, Nonlocal means-based speckle filteringfor ultrasound images., IEEE Transactions on Image Processing, 18 (2009), pp. 2221–9.

[RI30] P. Coupé, P. Hellier, X. Morandi, and C. Barillot, 3d rigid registration of intraoperativeultrasound and preoperative mr brain images based on hyperechogenic structures, International Journalof Biomedical Imaging, (2011), p. 53131.

[RI31] P. Coupé, J. V. Manjon, E. Gedamu, D. Arnold, M. Robles, and L. Collins, An object-based method for rician noise estimation in mr images., Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing andComputer-Assisted Intervention, 12 (2009), pp. 601–8.

[RI32] P. Coupé, J. Manjón, V. Fonov, J. Pruessner, M. Robles, and D. L. Collins, Patch-basedsegmentation using expert priors: Application to hippocampus and ventricle segmentation., NeuroIm-age, 54 (2011), pp. 940–954.


[RI33] P. Coupé, J. Manjón, E. Gedamu, D. Arnold, M. Robles, and D. L. Collins, Robust riciannoise estimation for mr images., Medical Image Analysis, 14 (2010), pp. 483–93.

[RI34] P. Coupé, J. Manjón, M. Robles, and L. Collins, Adaptive multiresolution non-local meansfilter for 3d mr image denoising, IET Image Processing, (2011).

[RI35] P. Coupé, J. V. Manjón, M. Chamberland, M. Descoteaux, and B. Hiba, Collaborativepatch-based super-resolution for diffusion-weighted images., NeuroImage, (2013).

[RI36] P. Coupé, M. Munz, J. V. Manjón, E. S. Ruthazer, and D. Louis Collins, A candle for adeeper in vivo insight., Med Image Anal, 16 (2012), pp. 849–64.

[RI37] A. Cohé and M. Hachet, Beyond the mouse: Understanding user gestures for manipulating 3dobjects from touchscreen inputs, Computers and Graphics, (2012).

[RI38] E. Darles, B. Crespin, D. Ghazanfarpour, and J.-C. Gonzato, A survey of ocean simulationand rendering techniques in computer graphics, Computer Graphics Forum, 30 (2011), pp. 43–60.

[RI39] B. De Araujo, G. Casiez, J. Jorge, and M. Hachet, Mockup builder: 3d modeling on andabove the surface, computer & graphics, 37 (2013), pp. 165–178.

[RI40] W. B. De Haas, M. Robine, P. Hanna, R. Veltkamp, and F. Wiering, Comparing approachesto the similarity of musical chord sequences, Lecture Notes in Computer Science – Exploring MusicContent, 6684 (2011), pp. 242–258.

[RI41] S. Eskildsen, P. Coupé, V. Fonov, J. Manjón, K. Leung, N. Guizard, S. Wassef, L. R.Ostergaard, and D. L. Collins, Beast: brain extraction based on nonlocal segmentation technique.,NeuroImage, 59 (2012), pp. 2362–73.

[RI42] S. Eskildsen, P. Coupé, D. García-Lorenzo, V. Fonov, J. C. Pruessner, and D. L.Collins, Prediction of alzheimer’s disease in subjects with mild cognitive impairment from the adnicohort using patterns of cortical thinning., NeuroImage, (2012).

[RI43] D. Fourer and S. Marchand, Informed spectral analysis: audio signal parameters estimationusing side information, EURASIP Journal on Advances in Signal Processing, Informed Acoustic SourceSeparation (2013), p. 2013:178.

[RI44] A. Fornés, V. C. Kieu, M. Visani, N. Journet, and D. Anjan, The icdar/grec 2013 musicscores competition: Staff removal, Lecture notes in computer science, (2014), pp. 1–16.

[RI45] F.-X. Féron, Les variations dans la vibration: vibratos, trémolos et trilles dans la trilogie - les troisstades de l’homme (1956-1965) pour violoncelle seul de giacinto scelsi, Filigrane, (2012).

[RI46] K. Gerdes, L. Clémént, and R. Marlet, A grammar correction algorithm, Lecture notes incomputer science, 5591 (2011), pp. 47–63.

[RI47] S. Gorlow and S. Marchand, Informed audio source separation using linearly constrained spatialfilters, IEEE Transactions on Audio, Speech and Language Processing, 21 (2013), pp. 3–13.

[RI48] S. Gorlow and J. Reiss, Model-based inversion of dynamic range compression, IEEE Transactionson Audio, Speech and Language Processing, 21 (2013), pp. 1434–1444.

[RI49] J. P. Guillet, B. Recur, L. Frederique, B. Bousquet, L. Canioni, I. Manek-Hönninger,P. Desbarats, and P. Mounaix, Review of terahertz tomography techniques, Journal of Infrared,Millimeter, and Terahertz Waves, 35 (2014), pp. 382–411.

[RI50] M. Hachet, J.-B. De La Rivière, J. Laviole, A. Cohé, and S. Cursan, Touch-based interfacesfor interacting with 3d content in public exhibitions, IEEE Computer Graphics and Applications, 33(2013), pp. 80–85.


[RI51] C. Haegelen, P. Coupé, V. Fonov, N. Guizard, P. Jannin, X. Morandi, and D. L. Collins,Automated segmentation of basal ganglia and deep brain structures in mri of parkinson’s disease, In-ternational Journal of Computer Assisted Radiology and Surgery, 8 (2013), pp. 99–110.

[RI52] P. Hellier, P. Coupé, X. Morandi, and D. L. Collins, An automatic geometrical and statisticalmethod to detect acoustic shadows in intraoperative ultrasound brain images, Medical Image Analysis,14 (2010), pp. 195–204.

[RI53] S. Hu, P. Coupé, J. Pruessner, and L. Collins, Appearance-based modeling for segmentationof hippocampus and amygdala using multi-contrast mr imaging., NeuroImage, 58 (2011), pp. 549–59.

[RI54] S. Hu, P. Coupé, J. C. Pruessner, and D. L. Collins, Nonlocal regularization for activeappearance model: Application to medial temporal lobe segmentation., Human Brain Mapping, (2012).

[RI55] S. Hu, J. C. Pruessner, P. Coupé, and D. L. Collins, Volumetric analysis of medial temporallobe structures in brain development from childhood to adolescence., NeuroImage, 74C (2013), pp. 276–287.

[RI56] J. E. Huggins, C. Guger, B. Allison, C. W. Anderson, A. Batista, A.-M. Brouwer,C. Brunner, R. Chavarriaga, M. Fried-Oken, A. Gunduz, D. Gupta, A. Kübler, R. Leeb,F. Lotte, L. E. Miller, G. Muller-Putz, T. Rutkowski, M. Tangermann, and D. E.Thompson, Workshops of the fifth international brain-computer interface meeting: Defining the future,Brain-Computer Interfaces, 1 (2014), pp. 27–49.

[RI57] O. Hugues, J.-M. Cieutat, and P. Guitton, Real-time infinite horizon tracking with data fusionfor augmented reality in a maritime operations context., Springer Virtual Reality, 17 (2013), p. 10.

[RI58] C. Kaes and H. Nicolas, Compressed domain indexing of scalable h.264/svc streams, Signal Pro-cessing Image Communication, 24, special issue: Scalable coded media beyond compression (2009),pp. 484–498.

[RI59] C. Kaes and H. Nicolas, Efficient video copy detection: Sequence matching in the h.264 compresseddomain, Journal of Communication and Computer, Vol. 8 (2011).

[RI60] S. Karaman, J. Benois-Pineau, V. Dovgalecs, R. Mégret, J. Pinquier, R. André-Obrecht, Y. Gaëstel, and J.-F. Dartigues, Hierarchical hidden markov model in detecting ac-tivities of daily living in wearable videos for studies of dementia, Multimedia Tools and Applications,69 (2014), pp. 743–771.

[RI61] P. Krämer, J. Benois-Pineau, and J.-P. Domenger, Local object-based super-resolution mo-saicing from low-resolution video, Signal Processing, 91 (2011), pp. 1771–1780.

[RI62] S. Li, G. Guennebaud, B. Yang, and J. Feng, Predicted virtual soft shadow maps with highquality filtering, Computer Graphics Forum, 30 (2011).

[RI63] Y. Liu and X. Granier, Online tracking of outdoor lighting variations for augmented reality withmoving cameras, IEEE Transactions on Visualization and Computer Graphics, 18 (2012), pp. 573–580.

[RI64] F. Lotte, Les interfaces cerveau-ordinateur: Conception et utilisation en réalité virtuelle, RevueTechnique et Science Informatiques, 31 (2012), pp. 289–310.

[RI65] F. Lotte and C. Guan, Regularizing common spatial patterns to improve bci designs: Unifiedtheory and new algorithms, IEEE Transactions on Biomedical Engineering, 58 (2011), pp. 355–362.

[RI66] F. Lotte, F. Larrue, and C. Mühl, Flaws in current human training protocols for sponta-neous brain-computer interfaces: lessons learned from instructional design, Frontiers in Human Neu-rosciences, 7 (2013).


[RI67] F. Lotte, A. Lécuyer, and B. Arnaldi, Furia: An inverse solution based feature extractionalgorithm using fuzzy set theory for brain-computer interfaces, IEEE Transactions on Signal Processing,57 (2009), pp. 3253–3263.

[RI68] F. Lotte, A. Van Langhenhove, F. Lamarche, T. Ernest, Y. Renard, B. Arnaldi, andA. Lécuyer, Exploring large virtual environments by thoughts using a brain-computer interface basedon motor imagery and high-level commands, Presence: Teleoperators and Virtual Environments /Presence Teleoperators and Virtual Environments, 19 (2010), pp. 54–70.

[RI69] H. Lu, R. Pacanowski, and X. Granier, Second-order approximation for variance reduction inmultiple importance sampling, Computer Graphics Forum, 32 (2013), pp. 131–136.

[RI70] S. Marchand, B. Mansencal, and L. Girin, Interactive music with active audio cds, Lecturenotes in computer science, 6684 (2011), pp. 31–50.

[RI71] J. Manjón, P. Coupé, A. Buades, V. Fonov, D. Louis Collins, and M. Robles, Non-localmri upsampling., Medical Image Analysis, 14 (2010), pp. 784–92.

[RI72] J. Manjón, P. Coupé, A. Buades, D. Louis Collins, and M. Robles, New methods for mridenoising based on sparseness and self-similarity., Medical Image Analysis, 16 (2012), pp. 18–27.

[RI73] J. Manjón, P. Coupé, L. Concha, A. Buades, L. Collins, and R. Montserrat, Diffusionweighted image denoising using overcomplete local pca, PlosOne, 8 (2013).

[RI74] J. Manjón, P. Coupé, L. Martí-Bonmatí, D. L. Collins, and M. Robles, Adaptive non-localmeans denoising of mr images with spatially varying noise levels., Journal of Magnetic ResonanceImaging, 31 (2010), pp. 192–203.

[RI75] J. V. Manjón, P. Coupé, A. Buades, D. L. Collins, and M. Robles, Mri superresolution usingself-similarity and image priors., International Journal of Biomedical Imaging, 2010 (2010), p. 425891.

[RI76] N. Mellado, P. Barla, G. Guennebaud, P. Reuter, and C. Schlick, Growing least squaresfor the continuous analysis of manifolds in scale-space, Computer Graphics Forum, (2012).

[RI77] C. Merlo and N. Couture, A user-centered approach for a tabletop-based collaborative designenvironment, Strojniški vestnik - Journal of Mechanical Engineering, 56 (2010), pp. 754–764.

[RI78] C. Morand, J. Benois-Pineau, J.-P. Domenger, J. Zepeda, E. Kijak, and C. Guillemot,Scalable object-based video retrieval in hd video databases, Eurasip Journal on Signal Processing: ImageCommunication, accepted (2010).

[RI79] C. Mühl, C. Jeunet, and F. Lotte, Eeg-based workload estimation across affective contexts,Frontiers in Neurosciences section Neuroprosthetics, 8 (2014).

[RI80] H. Nicolas, M. Koubàa, and C. Ben Amar, Collusion, mpeg-4 compression and frame droppingresistant video watermarking, MULTIMEDIA TOOLS AND APPLICATIONS journal, Special issueon Intelligent Interactive Multimedia Systems and Services (2011).

[RI81] P. Olivier and J. Boukhobza, A hardware time manager implementation for the xenomai real-time kernel of embedded linux, ACM SIGBED Review 9(2) 38-42, 9 (2012), pp. 38–42.

[RI82] P. Olivier and J. Boukhobza, Un système de cache hiérarchique pour les e/s présentant desmotifs séquentiels pour les mémoires flash nand, Technique et Science Informatiques (TSI), 32 (2013),pp. 203–228.

[RI83] P. Olivier, J. Boukhobza, and E. Senn, On benchmarking embedded linux flash file systems,ACM SIGBED Review 9(2) 43-47, 9 (2012), pp. 43–47.

[RI84] P. Olivier, J. Boukhobza, and E. Senn, Flashmon v2: monitoring raw nand flash memory i/orequests on embedded linux, ACM SIGBED Review - Special Issue on the 3rd Embedded OperatingSystem Workshop (EWiLi 2013), 11 (2014), pp. 38–43.


[RI85] A. Orzan, A. Bousseau, P. Barla, H. Winnemöller, J. Thollot, and D. Salesin, Diffusioncurves: A vector representation for smooth-shaded images, Communications of the ACM, 56 (2013),pp. 101–108.

[RI86] C. Oztireli, G. Guennebaud, and M. Gross, Feature preserving point set surfaces based onnon-linear kernel regression, Computer Graphics Forum, 28 (2009), pp. 493–501.

[RI87] R. Pacanowski, X. Granier, C. Schlick, and P. Pierre, Volumetric vector-based representationfor indirect illumination caching, Journal of Computer Science and Technology (JCST), 25 (2010),pp. 925–932.

[RI88] R. Pacanowski, O. Salazar-Celis, C. Schlick, X. Granier, P. Pierre, and C. Annie,Rational brdf, IEEE Transactions on Visualization and Computer Graphics, 18 (2012), pp. 1824–1835.

[RI89] F. Palhano Xavier De Fontes, G. Andrade Barroso, P. Coupé, and P. Hellier, Realtime ultrasound image denoising, Journal of Real-Time Image Processing, (2010).

[RI90] O. Palie, P. Michel, J. F. Menard, C. Rousseau, E. Rio, M.-E. Meyer, K. Jalali,S. Bardet, C. M. M’Vondo, P. Olivier, G. Faure, E. Itti, C. Diana, C. Houzard,F. Mornex, F. Di Fiore, and P. Vera, The predictive value of treatment response using fdg-petperformed at day 21 of chemo-radiotherapy in patients with oesophageal squamous cell carcinoma. aprospective, multicentre study (rtep3)., European Journal of Nuclear Medicine and Molecular Imaging,40 (2013), pp. 1345–55.

[RI91] N. Papadakis, A. Baeza, A. Bugeau, P. Gargallo I Piracés, O. D’Hondt, V. Caselles,X. Armangué, I. Rius, and S. Sagàs, Virtual camera synthesis for soccer game replays, Journal ofVirtual Reality and Broadcasting, 9(2012) (2013).

[RI92] N. Papadakis and A. Bugeau, Tracking with occlusions via graph cuts, IEEE Transactions onPattern Analysis and Machine Intelligence, 33 (2011), pp. 144–157.

[RI93] N. Papadakis, A. Bugeau, and V. Caselles, Image editing with spatiogram transfer, IEEETransactions on Image Processing, 21 (2012), pp. 2513 – 2522.

[RI94] F. Pierre, J.-F. Aujol, A. Bugeau, N. Papadakis, and V.-T. Ta, Exemplar-based colorizationin rgb color space, Internationnal Conference on Image Processing, (2014).

[RI95] V. Rabeux, N. Journet, A. Vialard, and J.-P. Domenger, Quality evaluation of degradeddocument images for binarization result prediction, International Journal on Document Analysis andRecognition (IJDAR), (2013), pp. 1–13.

[RI96] B. Raymond, G. Guennebaud, P. Barla, R. Pacanowski, and X. Granier, Optimizing brdforientations for the manipulation of anisotropic highlights, Computer Graphics Forum, (2014).

[RI97] P. Reuter, G. Riviere, N. Couture, S. Mahut, and L. Espinasse, Archeotui - driving virtualreassemblies with tangible 3d interaction, Journal on Computing and Cultural Heritage (JOCCH 2010),3 (2010), pp. 1–13.

[RI98] B. Recur, P. Desbarats, and J.-P. Domenger, Noise robust mojette reconstructions for missingwedge effect attenuation, Journal of Multimedia Processing and Technologies, 1 (2010), pp. 208–227.

[RI99] B. Recur, J. P. Guillet, L. Bassel, C. Fragnol, I. Manek-Hönninger, J.-C. Delagnes,W. Benharbone, P. Desbarats, J.-P. Domenger, and P. Mounaix, Terahertz radiation fortomographic inspection, Optical Engineering, 51 (2012), pp. 091609–1 – 091609–7.

[RI100] B. Recur, J.-P. Guillet, I. Manek-Hönninger, J.-C. Delagnes, W. Benharbone,P. Desbarats, J.-P. Domenger, L. Canioni, and P. Mounaix, Propagation beam considera-tion for 3d thz computed tomography, Optics Express, 20 (2012), pp. 5817–5829.


[RI101] B. Recur, A. Younus, S. Salort, P. Mounaix, B. Chassagne, P. Desbarats, J.-P.Caumes, and E. Abraham, Investigation on reconstruction methods applied to 3d terahertz com-puted tomography, Optics Express, 19 (2011), pp. 5105–5117.

[RI102] Y. Renard, F. Lotte, G. Gibert, M. Congedo, E. Maby, V. Delannoy, O. Bertrand,and A. Lécuyer, Openvibe: An open-source software platform to design, test and use brain-computerinterfaces in real and virtual environments, Presence: Teleoperators and Virtual Environments / Pres-ence Teleoperators and Virtual Environments, 19 (2010), pp. 35–53.

[RI103] B. Ridel, P. Reuter, J. Laviole, N. Mellado, N. Couture, and X. Granier, The revealingflashlight: Interactive spatial augmented reality for detail exploration of cultural heritage artifacts,Journal on Computing and Cultural Heritage, (2014).

[RI104] G. Riviere, N. Couture, and F. Jurado, Tangible user interfaces for geosciences, SEG Tech-nical Program Expanded Abstracts, 28 (2009), pp. 1137–1141.

[RI105] G. Riviere, N. Couture, and P. Reuter, The activation of modality in virtual objects assembly,Journal on Multimodal User Interfaces (JMUI 2010), 3 (2010), pp. 189–196.

[RI106] S. Roujol, J. Benois-Pineau, B. De Senneville, M. Ries, B. Quesson, and C. Moonen,Robust real time constrained estimation of respiratory motion interventional mri on mobile organs,IEEE Transactions on Information Technology in Biomedicine, 16 (2012), pp. 365 – 374.

[RI107] V. Roullier, O. Lezoray, V.-T. Ta, and A. Elmoataz, Multi-resolution graph-based anal-ysis of histopathological whole slide images: application to mitotic cell extraction and visualization,Computerized Medical Imaging and Graphics, 35 (2011), pp. 603–615.

[RI108] H. Sauzéon, P. Arvind Pala, F. Larrue, G. Wallet, M. Déjos, X. Zheng, P. Guitton,and B. N’Kaoua, The use of virtual reality for episodic memory assessment: effects of active navi-gation., Experimental Psychology, 59 (2011), pp. 99–108.

[RI109] R. Sicre and H. Nicolas, Shopping behaviour analysis in videos, International Journal on Graph-ics, Vision and Image Processing, 09 (2009), pp. 27–35.

[RI110] C. Sutour, C. Deledalle, and J.-F. Aujol, Adaptive regularization of the nl-means: Applica-tion to image and video denoising, IEEE Transactions on Image Processing, (2014).

[RI111] C. Sutour, C.-A. Deledalle, and J.-F. Aujol, Adaptive regularization of the nl-means : Ap-plication to image and video denoising, IEEE Transactions on Image Processing, (2014).

[RI112] D. Szolgay, J. Benois-Pineau, R. Mégret, Y. Gaëstel, and J.-F. Dartigues, Detectionof moving foreground objects in videos with strong camera motion, Pattern Analysis and Applications,14 (2011), pp. 311–328.

[RI113] V.-T. Ta, A. Elmoataz, and O. Lezoray, Nonlocal pdes-based morphology on weighted graphsfor image and data processing, IEEE Transactions on Image Processing, 26 (2011), pp. 1504–1516.

[RI114] N. Takouachet, N. Couture, P. Reuter, P. Joyot, G. Riviere, and N. Verdon, Tangibleuser interfaces for physically-based deformation: design principles and first prototype, The VisualComputer, Volume 28 (2012), pp. 799–808.

[RI115] S. Thureau, P. Chaumet Riffaud, R. Modzelewski, P. Fernandez, L. Tessonnier,L. Vervueren, F. Cachin, A. Berriolo-Riedinger, P. Olivier, H. Kolesnikov-Gauthier,O. Blagosklonov, B. Bridji, A. Devillers, L. Collombier, F. Courbon, E. Gremillet,C. Houzard, J.-M. Caignon, J. Roux, N. Aide, I. Brenot-Rossi, K. Doyeux, B. Dubray,and P. Vera, Interobserver agreement of qualitative analysis and tumor delineation of fmiso and fltpet-images in lung cancer., Journal of Nuclear Medicine, 54 (2013), pp. 1543–50.


[RI116] T. Tong, R. Wolz, P. Coupé, J. V. Hajnal, and D. Rueckert, Segmentation of mr im-ages via discriminative dictionary learning and sparse coding: Application to hippocampus labeling.,NeuroImage, (2013).

[RI117] R. Vaillant, L. Barthe, G. Guennebaud, M.-P. Cani, D. Rohmer, B. Wyvill,O. Gourmel, and M. Paulin, Implicit skinning: Real-time skin deformation with contact modeling,ACM Transactions on Graphics, 32 (2013).

[RI118] J. B. Van Erp, F. Lotte, and M. Tangermann, Brain-computer interfaces: Beyond medicalapplications, Computer -IEEE Computer Society-, 45 (2012), pp. 26–34.

[RI119] R. Vergne, P. Barla, R. Fleming, and X. Granier, Surface flows for image-based shadingdesign, ACM Transactions on Graphics, 31 (2012), pp. 94:1–94:9.

[RI120] R. Vergne, R. Pacanowski, P. Barla, X. Granier, and C. Schlick, Light warping forenhanced surface depiction, ACM Transaction on Graphics (Proceedings of SIGGRAPH 2009), 28(2009).

[RI121] R. Vergne, R. Pacanowski, P. Barla, X. Granier, and C. Schlick, Improving shape de-piction under arbitrary rendering, IEEE Transactions on Visualization and Computer Graphics, 17(2011), pp. 1071 – 1081.

[RI122] R. Vergne, D. Vanderhaeghe, J. Chen, P. Barla, X. Granier, and C. Schlick, Implicitbrushes for stylized line-based rendering, Computer Graphics Forum, 30 (2011), pp. 513–522.

[RI123] R. Vieux, J. Benois-Pineau, J.-P. Domenger, and A. Braquelaire, Segmentation-basedmulti-class semantic object detection, Multimedia Tools and Applications, (2011), pp. 1 – 22.

[RI124] F. Vincent, L. Barthe, G. Guennebaud, and M. Paulin, Soft textured shadow volume, Com-puter Graphics Forum, 28 (2009), pp. 1111–1120.

[RI125] M. Wolff, N. Couture, R. Mollard, and A. Clay, Développement d’une plateformed’évaluation personnalisable et adaptable pour l’étude du comportement émotionnel en situation demultisollicitations., Travail humain, 75 (2012), pp. 253–277.

[RI126] A. Younus, P. Desbarats, S. Bosio, E. Abraham, J.-C. Delagnes, and P. Mounaix, Tera-hertz dielectric characterisation of photopolymer resin used for fabrication of 3d thz imaging phantoms,Electronic Letters, 45 (2009), pp. 702–703.


[RN1] O. Augereau, N. Journet, and J.-P. Domenger, Reconnaissance et extraction de documents.une application industrielle à la détection de documents semi-structurés, Document numérique, 16 (2013),pp. 91–118.

[RN2] L. Clément, Zeugme sémantique, Revue de Sémantique et de Pragmatique, (2010), pp. 231–247.

[RN3] M. Desainte-Catherine, P. Hanna, M. Robine, and J.-L. Rouas, Labri. modélisation du son,de la parole et de la musique, Revue des Sciences et Technologies de l’Information, 32 (2013), pp. 515–518.

[RN4] R. Synave, S. Gueorguieva, and P. Desbarats, Calcul du chemin géodésique linéaire sur desmaillages triangulaires, Revue Electronique Francophone d’Informatique Graphique, 5 (2011), pp. 1–15.

[RN5] R. Vaillant, L. Barthe, G. Guennebaud, M.-P. Cani, D. Rohmer, and B. Wyvill, Défor-mation de la peau d’un personnage avec prise en compte des contacts, Revue Electronique Francophoned’Informatique Graphique, 6 (2012), pp. 37–49.

Contributed volumes (international)

[OI1] J. Benois-Pineau, F. Precioso, and M. Cord, Visual Indexing and Retrieval, Springer, 2012.

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[OI2] P. Fuchs, G. Moreau, and P. Guitton, Virtual Reality: Concepts and Technologies, Editor "CRC Press ", 2011.

[OI3] B. Ionescu, J. Benois-Pineau, T. Piatrik, and G. Quénot, Fusion in Computer Vision: Un-derstanding Complex Visual Content, Springer international publishing, 2014.


[ON1] H. Coqueugniot, P. Desbarats, and B. Dutailly, Anthropologie - du virtuel au réel :l’impression 3D., Editions Confluences, 2010.

[ON2] H. Coqueugniot and B. Dutailly, Anthropologie - Imagerie médicale et 3D., Editions Conflu-ences, 2010.


[CHI1] J. Allali, P. Ferraro, P. Hanna, and M. Robine, Polyphonic alignment algorithms for sym-bolic music retrieval, in Auditory Display, S. Ystad, M. Aramaki, R. Kronland-Martinet, and K. Jensen,eds., Springer Verlag Berlin, 2010, pp. 466–482.

[CHI2] P. Barla and A. Bousseau, Gradient art: Creation and vectorization, in Image and Video basedArtistic Stylization, P. R. John Colomosse, ed., Springer, 2012.

[CHI3] J. Benois-Pineau, S. Anthoine, C. Morand, J.-P. Domenger, E. Debreuve, W. BelHaj Ali, and P. Piro, Scalable indexing of hd video, in High-Quality Visual Experience, M. K. M.Mrak, Marta; Grgic, ed., Springer, 2010, pp. 497–524.

[CHI4] J. Benois-Pineau and B. Augereau, Motion estimation in color image sequences, in Digital ColorImaging, L. M. Christine Fernandez-Maloigne, Frederic Robert-Ignacio, ed., Willey, 2012, p. 368.

[CHI5] J. Benois-Pineau, A. Bugeau, S. Karaman, and R. Mégret, Spatial and multi-resolutioncontext in visual indexing, in Visual Indexing and Retrieval, Springer, ed., Springer, 2012.

[CHI6] J. Benois-Pineau, B. Lovell, and R. Andrews, Motion estimation in colour image sequences,in Advanced Color Image Processing and Analysis, C. Fernandez-Maloigne, ed., Springer, 2013, pp. 377– 395.

[CHI7] H. Boujut, A. Bugeau, and J. Benois-Pineau, Visual search for objects in a complex visualcontext: what we wish to see, in Semantic Multimedia Analysis and Processing, P. M. Evaggelos Spyrou,Dimitris Iakovidis, ed., CRC Press, 2014.

[CHI8] P. Bénard, J. Thollot, and J. Collomosse, Temporally coherent video stylization, in Image andVideo-based Artistic Stylisation, P. Rosin and J. Collomosse, eds., vol. 42, Springer, 2012, pp. 257–284.

[CHI9] A. Clay, E. Delord, N. Couture, and G. Domenger, Augmenting a ballet dance show usingthe dancer’s emotion: Conducting joint research in dance and computer science, in Arts and Technology,Springer Berlin Heidelberg, 2010, pp. 148–156.

[CHI10] N. Couture, G. Riviere, and P. Reuter, Tangible interaction in mixed reality systems, inMIXER - The Engineering of Mixed Reality Systems, G. P. Dubois E. and N. L., eds., Springer-Verlag,2010, pp. 101–120.

[CHI11] A. Elmoataz, O. Lezoray, V.-T. Ta, and S. Bougleux, Partial difference equations on graphsfor local and nonlocal image processing, in Image Processing and Analysis with Graphs: Theory andPractice, O. Lézoray and L. Grady, eds., CRC Press / Taylor & Francis, 2012.

[CHI12] P. Ferraro, M. Robine, J. Allali, P. Hanna, and R. Thomas, Detection of near-duplicatemusical documents from a multi-level comparison of tonal information, in Information Extraction fromthe Internet, iconcept press, 2011, pp. 129–143.


[CHI13] G. Gagneré, R. Ronfard, and M. Desainte-Catherine, La simulation du travail théâtral etsa " notation " informatique, in Notation du travail théâtral, du manuscript au numérique, M. Martinez,S. Proust, and M. Pouget, eds., Lansman, 2012.

[CHI14] O. Hugues, J.-M. Cieutat, and P. Guitton, Gis and augmented reality : State of the art andissues, in Handbook of Augmented Reality, B. Furht, ed., Springer, 2011, p. 850.

[CHI15] F. Lotte, J. Faller, C. Guger, Y. Renard, G. Pfurtscheller, A. Lécuyer, and R. Leeb,Combining bci with virtual reality: Towards new applications and improved bci, in Towards PracticalBrain-Computer Interfaces:, B. Z. Allison, S. Dunne, R. Leeb, J. D. R. Millán, and A. Nijholt, eds.,Springer, 2013.

[CHI16] P. Olivier, J. Boukhobza, and E. Senn, Flash based storage in embedded systems, in EmbeddedComputing Systems: Applications, Optimization, and Advanced Design, IGI Global, 2013.

[CHI17] M. Toro, A. Allombert, and M. Desainte-Catherine, Modeling temporal constraints for asystem of interactive scores, in Constraint Programming in Music, Wiley, 2011, pp. 1–23.

[CHI18] Y. Zhou, J. Benois-Pineau, and H. Nicolas, A multi-resolution particle filter tracking witha dual consistency check for model update in a multi-camera environment, in Analysis, Retrieval andDelivery of Multimedia Contents, Springer, ed., -, 2011.


[DI1] D. Coyle, J. Principe, F. Lotte, and A. Nijholt, Guest Editorial: Brain/Neuronal-ComputerGame Interfaces and Interaction, IEEE, 2013.

[DI2] M. Hachet and M. Dellepiane, "Interacting with the past" - Special Issue of Journal on Computingand Cultural Heritage, vol. 7, ACM, 2014.

[DI3] M. Hachet, K. Kiyokawa, and J. Laviola, Proceedings of 3DUI 2010 - IEEE Symposium on 3DUser Interfaces, IEEE, 2010.

[DI4] M. Hachet and E. Kruijff, IEEE Transactions on Visualization and Computer Graphics (vol.16, no. 1), Jan/Feb 2010. Guest Editor’s: Special Section on the ACM Symposium on Virtual RealitySoftware and Technology, IEEE, 2010.

[DI5] J. Laviola, M. Hachet, and M. Billinghurst, Proceedings of 3DUI 2011, IEEE Symposium on3D User Interfaces, IEEE, 2011.

Editors of contributed volumes (national)

[DN1] F. Lambert, C. Bassac, and L. Clément, Revue de Sémantique et de Pragmatique numéro 24,Presses Universitaires d’Orléans, 2010.


[II1] E. Baldisser, J.-M. Cieutat, and P. Guitton, Apports de la réalité augmentée à la gestion deréseaux et de mobiliers urbains, in 8èmes journées de l’Association Française de Réalité Virtuelle, Aug-mentée, Mixte et d’Intéraction 3D, 2013.

[II2] J. Benois-Pineau, Indexing of compressed video: Methods, challenges, applications, in Image Pro-cessing Theory Tools and Applications (IPTA), 2010 2nd International Conference on, IEEE, 2010,pp. 3–4.

[II3] V. C. Kieu, J.-P. Domenger, R. Mullot, N. Journet, and M. Visani, A character degradationmodel for grayscale ancient document images, in 21st International Conference on Pattern Recognition(ICPR), 2012.

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[II4] V. C. Kieu, A. Fornés, M. Visani, N. Journet, and D. Anjan, The icdar/grec 2013 music scorescompetition on staff removal, in 10th IAPR International Workshop on Graphics Recognition, 2013.

[II5] V. C. Kieu, N. Journet, M. Visani, R. Mullot, and J.-P. Domenger, Semi-synthetic documentimage generation using texture mapping on scanned 3d document shapes, in The Twelfth InternationalConference on Document Analysis and Recognition, 2013.

[II6] V. C. Kieu, M. Maroua, V. Rabeux, N. Journet, and M. Visani, Génération d’images semi-synthétiques de documents anciens à des fins d’évaluation de performances et d’apprentissage, in Col-loque International Francophone sur l’Écrit et le Document 2014 (CIFED), 2014.

[II7] V. C. Kieu, M. Visani, N. Journet, R. Mullot, and J.-P. Domenger, An efficient parametriza-tion of character degradation model for semi-synthetic image generation, in 2nd International Workshopon Historical Document Imaging and Processing, 2013.

[II8] M. Visani, V. C. Kieu, A. Fornés, and N. Journet, The icdar 2013 music scores competition:Staff removal, in The Twelfth International Conference on Document Analysis and Recognition, 2013.

[II9] Y. Zhou, J. Benois-Pineau, and H. Nicolas, Multi-object particle filter tracking with automaticevent analysis, in First ACM ARTEMIS2010 International Workshop on Analysis and Retrieval ofTracked Events and Motion in Imagery Streams, 2010.

[II10] Y. Zhou, J. Benois-Pineau, and H. Nicolas, A multi-resolution particle filter tracking with a dualconsistency check for model update in a multi-camera environment, in 11th International Workshop onImage Analysis for Multimedia Interactive Services, 2010.

[II11] Y. Zhou, B. Mansencal, and J. Benois-Pineau, A multi-object particle filter tracking with a dualconsistency check: Application to mid-level concept detection in videos, in 8th International Workshopon Content-Based Multimedia Indexing, 2010.


[IN1] A. Clay, G. Domenger, and N. Couture, Conférence dansée : recherche conjointe en art etscience, in Séminaires pédagogiques de l’IUFM de Bordeaux : Conférence Dansée, recherche conjointeen art et science, 2011.

[IN2] N. Mellado, P. Reuter, and F. Berthaut, Analyse de l’influence des systèmes de visualisa-tion immersif sur l’assemblage virtuel de fragments en archéologie, in AFRV 2009 - 4ème Journées del’Association Française de Réalité Virtuelle, 2009.

[IN3] N. Mellado, P. Reuter, and C. Schlick, Assemblage d’objets 3d semi-automatique basé géométrieen archéologie, in Actes des 22èmes Journées de l’Association Française d’Informatique Graphique(AFIG), 2009.

[IN4] Y. Ren, Bag-of-bags of words : Irregular graph pyramids vs spatial pyramid matching for imageretrieval, in École Jeunes Chercheurs en Informatique Mathématique 2014, 2014.


[CI1] J. Aceituno, J. Castet, M. Desainte-Catherine, and M. Hachet, Improvised interfaces forreal-time musical applications, in Tangible, embedded and embodied interaction (TEI), 2012.

[CI2] A. Allombert, R. Marczak, M. Desainte-Catherine, P. Baltazar, and L. Garnier, Vi-rage : Designing an interactive intermedia sequencer from users requirements and the background, inProceedings of the International Computer Music Conference 2010, New-York, USA, 2010, pp. 1–1.

[CI3] B. Aubert-Broche, V. Fonov, D. García-Lorenzo, A. Mouiha, N. Guizard, P. Coupé,S. Eskildsen, and L. Collins, A new framework for analyzing structural volume changes of lon-gitudinal brain mri data, in Spatio-temporal Image Analysis for Longitudinal and Time-Series ImageData, vol. 7570 of LNCS, 2012, pp. 50–62.


[CI4] O. Augereau, N. Journet, and J.-P. Domenger, Reconnaissance et extraction de piècesd’identité, in Actes du douzième Colloque International Francophone sur l’Écrit et le Document, 2012,pp. 179–194.

[CI5] O. Augereau, N. Journet, and J.-P. Domenger, Semi-structured document image matching andrecognition, in Document Recognition and Retrieval XX, 2013, pp. 1–12.

[CI6] O. Augereau, N. Journet, and D. Jean Philippe, Document images indexing with relevancefeedback : an application to industrial context, in ICDAR, 2011, pp. 1190–1194.

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[SI1] A. Clay, N. Couture, and L. Nigay, Towards an architecture model for emotion recognition ininteractive systems: Application to a ballet dance show, in Proceedings of WinVR’09, the ASME/AFM2009 World Conference on Innovative Virtual Reality - World Conference on Innovative Virtual Reality(WinVR’09), 2009, pp. 19–24.

[SI2] A. Clay, N. Couture, M. Real, J.-B. De La RiviÈre, and G. Domenger, The care project :a success story, in Articulture : Workshop sur les industries créatives, 2011.

[SI3] C. Clouchoux, P. Coupé, J. Manjón, N. Guizard, M. Bouyssi-Kobar, M. Lefebvre,A. Du Plessis, A. Evans, and C. Limperopoulos, A novel approach for high-resolution imagereconstruction for in-vivo fetal brain mri, in Organization for Human Brain Mapping 2010 AnnualMeeting, 2010.

[SI4] P. Coupé, V. Fonov, J. Manjón, and L. Collins, Template construction using a patch-basedrobust estimator, in Organization for Human Brain Mapping 2010 Annual Meeting, 2010.

[SI5] N. Couture and G. Riviere, The activation of modality in virtual objects assembly, in Workshopon the Challenges of Engineering Multimodal Interaction: Methods, Tools, Evaluation (OI’09), 2009.

[SI6] C. Coutrix, G. Riviere, K. Borgiel, J. Castet, N. Couture, U. Brygg, G. Jens, P. Reuter,N. Takouachet, C. Kolski, S. Lepreux, J. Legardeur, S. Kubicki, Y. Jansen, and A. Boua-did, Methods for designing tangible ui: A first comparative case study, in Seventh International Confer-ence on Tangible, Embedded and Embodied Interaction, 2013.

[SI7] B. Delezoide, F. Precioso, P.-H. Gosselin, M. Redi, B. Merialdo, L. Granjon, D. Pel-lerin, M. Rombaut, H. Jégou, R. Vieux, B. Mansencal, J. Benois-Pineau, S. Ayache,B. Safadi, F. Thollard, G. Quénot, H. Bredin, M. Cord, A. Benoit, P. Lambert, T. Strat,J. Razik, S. Paris, and H. Glotin, Irim at trecvid 2011: Semantic indexing and instance search, inTRECVID 2011 - TREC Video Retrieval Evaluation Online, 2011, p. 12p.

[SI8] B. Dutailly, H. Coqueugniot, P. Desbarats, S. Gueorguieva, and R. Synave, From vir-tuality to reality: contributions of 3d printing, in 37th Annual CAA Conference: “Making HistoryInteractive", 2009.

[SI9] O. Dutour, H. Coqueugniot, P. Desbarats, and G. Palfi, Application of 3d imaging techniquesto paleopathology., in 18th European Meeting of the Paleopathology Association, 2010.

[SI10] S. Eskildsen, P. Coupé, V. Fonov, L. R. Ostergaard, and L. Collins, Effect of non-localmeans denoising on cortical segmentation accuracy with face, in Organization for Human Brain Mapping2011 Annual Meeting, 2011.

[SI11] S. Eskildsen, J. Manjón, P. Coupé, V. Fonov, and L. Collins, Superresolution improves mricortical segmentation with face, in Organization for Human Brain Mapping, 2012.

[SI12] V. Fonov, P. Coupé, M. Styner, and L. Collins, Automatic lateral ventricle segmentation ininfant population with high risk of autism, in Organization for Human Brain Mapping, 2012.

[SI13] C. Gaser and P. Coupé, Impact of non-local means filtering on brain tissue segmentation, inOrganization for Human Brain Mapping 2010 Annual Meeting, 2010.

[SI14] S. Gorlow and S. Marchand, On the informed source separation approach for interactive remixingin stereo, in 134th Audio Engineering Society (AES) Convention, 2013.

[SI15] N. Guizard, P. Coupé, V. Fonov, D. Arnold, and L. Collins, Robust fusion of jacobian mapsfor deformation-based morphometry, in Organization for Human Brain Mapping 2011 Annual Meeting,2011.

[SI16] P. Guyomarc’H, H. Coqueugniot, B. Dutailly, and C. Couture, The anatomical placementof the human eyeball in the orbit – new metric data and guidelines proposal for facial identification., inThe 79th annual meeting of the American Association of Physical Anthropologists, 2010.


[SI17] C. Haegelen, N. Guizard, P. Coupé, F. Lalys, P. Jannin, X. Morandi, and D. L. Collins,Validation of basal ganglia segmentation on a 3t mri template, in Human Brain Mapping, 2011.

[SI18] O. Hugues, J.-M. Cieutat, V. Pilnière, and P. Guitton, Sig maritime augmenté (sigma) unsystème enactif de réalité augmentée, in 12e Conférence Internationale en Ergonomie et InformatiqueAvancée (Ergo’IA 2010), 2010, pp. 1–3.

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[SN1] A. Clay, G. Domenger, and N. Couture, Conférence dansée : Recherche conjointe en art etscience, in L’informatique Affective au service de l’Art, 2011.

[SN2] A. Clay, J.-C. Lombardo, N. Couture, and J. Conan, Peinture numérique 3d bi-manuelle:un paradigme d’interaction pour la réalité augmentée en spectacle vivant, in Journées de l’AssociationFrançaise de Réalité Virtuelle, 2012.

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[SN7] P. Guyomarc’H, H. Coqueugniot, B. Dutailly, and C. Couture, Élaboration et exploitabil-ité d’une collection anthropologique numérique de référence., in 1835èmes Journées de la Sociétéd’Anthropologie de Paris, 2010.

[SN8] P.-L. Henaux, P. Hellier, P. Jannin, P. Coupé, C. Haegelen, S. Diabara, andX. Morandi, Evaluation de la précision d’une méthode de recalage automatique échographie 3d intra-opératoire - irm pré-opératoire en neurochirurgie, in Congrès de la Société de Neurochirurgie de LangueFrançaise, 2009.

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[AI1] O. Augereau, N. Journet, A. Vialard, and J.-P. Domenger, Improving classification of anindustrial document image database by combining visual and textual features. 2014.

[AI2] O. Ben Ahmed, J. Benois-Pineau, M. Allard, C. Ben Amar, and G. Catheline, Classificationof alzheimer’s disease subjects from mri using hippocampal visual features. 2014.

[AI3] F. Berthaut, M. Desainte-Catherine, J. Bages I. Rubi, and D. Fober, Atelier: Quellesinterfaces pour combiner l’ écriture et la manipulation dynamique du temps dans les systèmes musicauxinteractifs ? 2013.

[AI4] H. Boujut, J. Benois-Pineau, T. Ahmed, O. Hadar, and P. Bonnet, Nr video quality metricwith visual saliency from h.264 code stream in lossy network channels. 2012.

[AI5] H. Boujut, A. Bugeau, and J. Benois-Pineau, Visual search for objects in a complex visualcontext: what we wish to see. 2013.

[AI6] H. Boujut, V. Buso, and J. Benois-Pineau, Objective prediction of visual saliency maps in ego-centric videos for content-action interpretation. 2013.

[AI7] A. Bugeau, V.-T. Ta, and N. Papadakis, Variational exemplar-based image colorization. 2013.

[AI8] N. Couture, The first tangible interaction studio, ERCIM News, Image Understanding, (2013), p. 53.

[AI9] P. Desbarats, S. Gueorguieva, R. Synave, H. Coqueugniot, and B. Dutailly, Strasbourgjuvenile collection: Computer assisted anthropology for the anterior fontanelle reconstruction and sizeevaluation. Rapport de recherche RR-1454-09 LaBRI, 2009.

[AI10] S. Gorlow, Reverse audio engineering for active listening and other applications, PhD thesis, Uni-versité Sciences et Technologies - Bordeaux I, 2013.

[AI11] I. González-Díaz, H. Boujut, V. Buso, J. Benois-Pineau, and J.-P. Domenger, Saliency-based object recognition in video. 2013.

[AI12] X. Granier, Nouvelles représentations pour une synthèse d’images plus dirigée vers l’utilisateur,PhD thesis, Université Sciences et Technologies - Bordeaux I, 2009.

[AI13] M. Hachet, Interfaces utilisateur 3D, des terminaux mobiles aux environnements virtuels immersifs,PhD thesis, Université Sciences et Technologies - Bordeaux I, 2010.

[AI14] J. Hadim, R. Pacanowski, X. Granier, and C. Schlick, Flat bidirectional texture functions,tech. rep., 2009.

[AI15] I. Ihrke, X. Granier, G. Guennebaud, L. Jacques, and B. Goldluecke, An introduction tooptimization techniques in computer graphics. 2014.

[AI16] C. Jeunet, C. Mühl, and F. Lotte, Conception et validation d’un protocole pour induire du stresset le mesurer dans des signaux physiologiques. 2013.

[AI17] S. Karaman, J. Benois-Pineau, and R. Mégret, Nested graph words for object recognition, tech.rep., 2011.

[AI18] S. Knödel, M. Hachet, and P. Guitton, Interactive generation and modification of cutawayillustrations for polygonal models. 2009.


[AI19] J. Laviole, Interaction en Réalité Augmentée Spatiale pour le Dessin Physique, PhD thesis, Univer-sité Sciences et Technologies - Bordeaux I, 2013.

[AI20] F. Lotte, A. Lécuyer, and C. Guan, Towards a fully interpretable eeg-based bci system. 2010.

[AI21] H. Lu, Échantillonnage d’importance des sources de lumière réalistes, PhD thesis, Université Scienceset Technologies - Bordeaux I, 2014.

[AI22] J. V. Manjon, P. Coupé, A. Buades, D. L. Collins, and M. Robles, Mri superresolutionusing self similarity and image priors. 2010.

[AI23] N. Mellado, Analyse des objets 3D a plusieurs échelles: application à l’assemblage de formes, PhDthesis, Université Sciences et Technologies - Bordeaux I, 2012.

[AI24] R. Pacanowski, X. Granier, C. Schlick, and P. Poulin, Volumetric vector-based representa-tion for indirect illumination caching, tech. rep., 2009.

[AI25] F. Pierre, J.-F. Aujol, A. Bugeau, and V.-T. Ta, Hue constrained image colorization in thergb space. 2014.

[AI26] B. Raymond, G. Guennebaud, P. Barla, R. Pacanowski, and X. Granier, Understandinganisotropic highlights for interactive appearance editing. 2013.

[AI27] Y. Ren, A. Bugeau, and J. Benois-Pineau, Bag-of-bags of words model over irregular graphpartitions for image retrieval, tech. rep., 2013.

[AI28] Y. Ren, A. Bugeau, and J. Benois-Pineau, Visual object retrieval by graph features, tech. rep.,2013.

[AI29] Y. Ren, A. Bugeau, and J. Benois-Pineau, Bag-of-bags of words : Irregular graph pyramids vsspatial pyramid matching for image retrieval, tech. rep., 2014.

[AI30] P. Reuter, N. Mellado, X. Granier, I. Hairy, R. Vergnieux, and N. Couture, Semi-automatic 3d acquisition and reassembly of cultural heritage: The search project, ERCIM News, ICTfor Cultural Heritage, (2011), pp. 12–13.

[AI31] G. Riviere and N. Couture, Cinquième atelier du gt interaction tangible. 2013.

[AI32] D. Vanderhaeghe, R. Vergne, P. Barla, and W. Baxter, Bidirectional appearance distribu-tion function for stylized shading, tech. rep., 2010.

[AI33] C. J. Zubiaga Peña, L. Belcour, P. Barla, and X. Granier, Transfer and manipulation ofappearance from the image of a sphere. 2013.


[AN1] P. Baltazar, A. Allombert, R. Marczak, J.-M. Couturier, M. Roy, A. Sèdes, andM. Desainte-Catherine, Virage : Une réflexion pluridisciplinaire autour du temps dans la créationnumérique. 2009.

[AN2] S. Boyé, Représentation hybride pour la modélisation géométrique interactive, PhD thesis, UniversitéSciences et Technologies - Bordeaux I, 2012.

[AN3] S. Boyé, P. Barla, and G. Guennebaud, Interview 3dvf - recherche : Free-form vector gradients.2012.

[AN4] P. Bénard, Stylisation temporellement cohérente d’animations 3D basée sur des textures, PhD thesis,Université Sciences et Technologies - Bordeaux I, 2011.

[AN5] P. Bénard, A. Bousseau, V. Boyer, J. Thollot, and D. Vanderhaeghe, Cours : Renduexpressif. 2010.

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[AN6] A. Clay, G. Domenger, N. Couture, J.-B. De La RiviÈre, and M. Desainte-Catherine,Spectacle augmenté : le projet care, un processus de recherche. Spectacle au casino de biarritz, mise enscène du processus de recherche du projet ANR CARE et démonstration des technologies développéesau cours du projet., 2011.

[AN7] D. Fourer, Approche informée pour l’analyse du son et de la musique, PhD thesis, Université Scienceset Technologies - Bordeaux I, 2013.

[AN8] D. Fourer, Approche informée pour l’analyse du son et de la musique, PhD thesis, Université Scienceset Technologies - Bordeaux I, 2013.

[AN9] P. Guitton, Agir avec doigté en trois dimensions. 2010.

[AN10] M. Hachet, Quand la réalité virtuelle rencontre les surfaces tactiles. 2013.

[AN11] M. Hachet and C. Castro, Arrêtez de regarder la 3d, prenez-en le contrôle ! 2013.

[AN12] M. Hachet and B. Martin, Interaction hommes-machines : une histoire de 30 ans. 2013.

[AN13] F. Lotte, Grâce au numérique, on peut lire dans les pensées. 2013.

[AN14] V. Rabeux, Évaluation de la qualité des documents anciens numérisés, PhD thesis, UniversitéSciences et Technologies - Bordeaux I, 2013.

[AN15] G. Rivérieux, P. Guitton, C. Kirchner, M. Medves, M. Jacques, A. Monteil, andL. Romary, Episciences iam : un projet entre rupture et continuité. 2014.


[AN17] R. Vergne, P. Barla, X. Granier, and R. Fleming, Interview 3dvf: Retour sur surface flows(siggraph 2012). 2012.

Patents (international)

[BI1] J.-B. De La RiviÈre, C. Christophe, M. Hachet, B. Bossavit, and G. Casiez, System forcolocating a touch screen and a virtual object, and device for manipulating virtual objects implementingsuch a system. patent n WO2012172044A1, 2012.

[BI2] B. Martin, P. Hanna, V. T. Ta, M. Desainte-Catherine, J. Allali, M. Robine, andP. Ferraro, Exemplar based assignment of large missing audio parts using string matching on tonalfeatures. patent n US61/547,854., 2011.

Patents (national)

[BN1] M. Hachet, J.-B. De La RiviÈre, B. Bossavit, and G. Casiez, Système de colocalisation d’unécran tactile et d’un objet virtuel et dispositif pour la manipulation d’objets virtuels mettant en œuvre untel système. patent n 1155341, 2011.

Patents


– Système de colocalisation d’un écran tactile et d’un objet virtuel et dispositif pour la manipulation d’objetsvirtuels mettant en oeuvre un tel système. Martin Hachet ; J.-B. De La Rivière; Benoît Bossavit; GeryCasiez. France, 1155341. Jun. 2011

– Système d’affichage de données caractérisant l’activité cérébrale d’un individu, procédé et programmed’ordinateur associé, Lécuyer A., Mercier-Granady J., Lotte F., Marchal M., French patent application13/63180, INRIA, December 2013

– Simultaneous segmentation and grading of structures for state determination. Collins L., Coupé P.; Pub-lication No. WO/2013/037070. International Application No. PCT/CA2012/050644. McGill University.

– A Process for Assigning Audio Data in Missing Audio Parts of a Music Piece and Device for Performingthe Same. Allali J., Desainte-Catherine M., Ferraro P., Hanna P., Martin B., Matthias ROBINE, Ta V.-T.Université Bordeaux 1, institut polytechnique de Bordeaux 2013, WO/2013057680

– Procédé de modélisation d’une pièce formée de tissus osseux. Coqueugniot H., Desbarats P., Dutailly B.,Dutour O. Université de Bordeaux, Université Aix-Marseille. BR39066/EP/vh (France).

Registered software– Navidget, https://team.inria.fr/potioc/fr/scientific-subjects/navidget-for-easy-3d-camera-positioning-from-2d-inputs/

– OpenViBE, http://http://openvibe.inria.fr/– Eigen, http://eigen.tuxfamily.org/– PFScalibration, http://pfstools.sourceforge.net/index.html– SmithDR, http://smithdr.labri.fr/– Corpus ICOS, http://www.openvideo.org,– Corpus Video Quality, Qualinet– BirdSong, 2012– Musical Structure Analysis, 2012– Neko3D, 2012– CityBird, 2014

Other software– PatateLib, http://patate.gforge.inria.fr/html/– ALTALib, http://alta.gforge.inria.fr/– HDRSee, http://mhdrviewer.gforge.inria.fr/– LIBa2ri, http://liba2ri.free.fr/– MMASS– MAgIS– AMORSS– BEaST– volBain– MRIdenoisingPackage– DWIdenoisingPackage– LPCA– SNIPE– CANDLE– CLASR

Completed PhDs– Aurélie Cohé, 2009-2012– Florent Berthaut, 2007-2010– Fabrice Dècle, 2006-2009– Sebastian Knoedel, 2006-2009


– Jérôme Baril, 2005-2010– Julien Hadim, 2005-2009– Romain Pacanowski, 2005-2009– Rémi Synave, 2006-2009– Romain Vergne, 2007-2010– Yann Savoye, 2008-2012– Simon Boyé, 2009-2012– Nicolas Mellado, 2009-2012– Jéremy Lavoile, 2010-2013– Richard Moussa, 2009-2012– Vincent Rabbeux, 2009-2012

including cotutelle PhDs (international)– Camille Jeunet, Université de Bristol, 2013-2016– Jiazhou Chen, 2009-2012

including cotutelle PhDs (national)– Cuong Kieu Van, Université de La Rochelle, 2011-2014

Completed habilitations– Xavier Granier, 2009– Pascal Desbarats, 2010– Martin Hachet, 2010– Ivo Ihrke, 2012– Marie Beurton-Aimar, 2014

F.2.2 Visibility and attractivityEditorial and organizational activities

Steering committee (international)– ASSMBM, 2007-– CBMI, 2012– IPTA, 2012– GCH, 2014– IEEE 3DUI, 2014

Steering committee (national)– TSI, 2012-

Program committee (international)– Eurographics, 2008, 2009, 2011, 2014– Graphics Interface, 2009– IEEE 3DUI, 2009, 2010– CBMI 2009 - 2014– IEEE SMI, 2009, 2010– ISVC, 2009, 2010, 2011– Web3D, 2009, 2010, 2011, 2012, 2013– ACM NPAR, 2010, 2011– ACM Siggraph, Asia, 2010– Graphics Interface, 2010


– CBTV, 2010– Eurographics - CulturalHeritage, 2011– Eurographics - STAR, 2011– Eurographics, 2011– ICMI, 2011– MASmms - ECAL - 2011– PRN, 2011-2014– IEEE SCI, 2011– IEEE VR, 2011, 2013– 3DCHI, 2012– Grand challenge on BCI at ICMI, 2012– ECAI, 2012– ICISP, 2012, 2014– ICMI, 2012– IPTA, 2012– MMM 2012, 2014– Siggraph Asia Tech. Brief & Posters 2012 and 2013– ACII, 2013– CVPR, 2013, 2014– IEEE ICCV, 2013– ICCP, 2013,2014– ICMR’2013– CCD, 2013– BMVC, 2013– 3DPVT, 2013– EGSR, 2013– IEEE SCI, 2013– Pacific Graphics, 2013– HPG, 2013– WSCG, 2013– BCI, 2014– ELS, 2014– Expressive, 2014– ECCV, 2014– GCH 2014– CCD, 2014– IEEE ICIP, 2014– SUI, 2014– SPIE Photonics Asia, 2014– Siggraph Asia E-Tech, 2014

Program committee (national)– Journées de l’Association Française d’Informatique Graphique, 2009, 2010– Reconnaissance de Formes et Intelligence Artificielle, 2012, 2014– GRETSI 2013, 2014

Presidence of program committee (international)– IEEE CAD Graphics, Yellow Mountain, 2009


– IEEE 3DUI, Symposium on 3D User Interfaces, 2010 and 2011– ECCV, Workshop Information Fusion for Computer Vision, 2012– TIS, Tangible Interaction Studio, 2013Presidence of program committee (national)– UBIMOB, 2012– ERGOIA, 2014Organizing committee (conferences, seminaries, schools...) (international)– Joint Virtual Reality Conference, Poster co-chair, 2009– Joint Virtual Reality Conference, Demonstration co-chair, 2010– ACM MM, Video Track co-chair, 2010– PRISM ITN workshop, 2013– Cross-Cultural research on Speech Communication and Second Language learning processing, 2013– Imaging New Modalities workshop, 2013– Context-based Spoken Japanese Language, 2014Organizing committee (conferences, seminaries, schools...) (national)– Workshop on MAS in biology, 2008-2010– Sino-French Workshop, Huangshan (China), 2009– JST-CNRS Workshop, Bordeaux, 2009– IHM, Nice, 2011-2014– Neurocomp 2011 autumn school on Brain-Computer Interfaces– ErgoIHM, Biarritz, 2012– CIFED, 2012– Document workshop, 2012– Signal-Image seminaries, 2012-2014– JBAMI, 2014Presidence of organizing committee (international)– Workshop Information Fusion in Computer Vision (ECCV), 2012– MIRH (ACM MM), 2013Presidence of organizing committee (national)– IHM, 2013Journal editorial board (international)– Journal on Multimodal User Interfaces, Springer– Engineering of Mixed Reality Systems, Human-Computer Interaction Series, Springer– Signal Processing: Image Communication, Elsevier– Multimedia Tools and Applications, SpringerJournal editorial board (national)– Technique et Science Informatiques (TSI), Lavoisier– Technique et Science Informatiques (TSI), Special Issue on Ambiant Informatics, Lavoisier, 2012.Research animation (international)Research animation (national)– Member of board of French Association on Virtual Reality (AFVR),2012-– Member of board of Institute of Optics Graduate School (IOGS),2013-– Member of board of French Association on Human-Computer Interface (AFIHM), 2013-– Member of workgroup 4.6 CSAME, GDR I3, CNRS, 2005-2010– Creation and animation of the TANGINT/FR workgroup, AFIHM, 2011-– Member of Living Lab workgroup, AFIHM, 2011-2013– GDR - STIC Santé, Resp. Theme A– GDR - ISIS, Resp. Theme B



Presidence of expert committee (international)

Presidence of expert committee (national)– Member of Steering Committee of ANR ContInt program, 2010-2013– Member of MNEN experts group for the Computer and Digital Sciences program, 2010-2011

Membership in expert committee (international)– expertise de dossiers pour la promotion au grade de professeur aux universités de ’Auckland ( NZ) et BeerSheva (Israel).

Membership in expert committee (national)– Member of Legal and Ethical Risks Expert Committee of INRIA, 2012-– Member of ANR CONTINT evaluation committee, 2011, 2013, 2014– Member of AERES evaluation committee, 2010, 2014

Individual expert (reviewer) (international)– Expert for EACE (European Commission), 2011-2013– Expert for European Commission, 2012-– Expert for CHIST-ERA, ICT, european program, 2013– Expert for National Science and Engineering Council of Canada, 2013– Expert for United States-Isreal Binational Science Foundation, 2013– Expert for Hasler Foundation (Bern, Suisse), 2013– Expert for the Quebec Research Found - Nature and Technology (FRQNT), 2013– Expert for Israel Science Foundation, 2014– Expert for A*STAR joint council Organization, Singapore 2014

Individual expert (reviewer) (national)– Expert for ANR, EMCO, 2009, 2011– Expert for ANR, Generic and JCJC, 2009-2013– Expert for ANR, CONTINT, 2010– Expert for Finances ministry, 2011-2014– Expert for ARSLA, 2012– Expert for DIGITEO, 2014– Expert for PEPS CNRS-Inria-Inserm, 2012,2013– Expert for Inria associate team program– Scientific expert for CIFRE No 2012/0827– Scientific expert for CIFRE No 2013/0813

Presidence of selection board– Presidence of selection board for IR0 Inria, 2013

Membership in selection board– Member of selection board for IE Inria, 2009– Member of selection board for CR2 Inria, 2010, 2012-2013– Member of selection board for CR1 Inria, 2010-2012– Member of selection board for DR Inria, 2014– Member of selection board for CR CNRS, 2012, 2013, 2014– Member of selection board for assistant professor, Univ. Rennes, 2011– Member of selection board for assistant professor, Univ. Bordeaux, 2013, 2014– Member of selection board for IR CNRS/Univ. Toulouse, 2009– Member of selection board for IR INRA


Membership in prize jury– Member of jury for ANR Prize, 2013– Member of jury for Inria/Académie des Sciences Prize, 2012-– Member of jury for Best poster award, International BCI conference, Graz, Austria, 2011– Member of jury for Best poster award, BBCI workshop on Neurotechnologies, Berlin, Germany, 2012– Member of jury for Best demonstration and best paper awards, IHM, 2013– Member of jury for PhD AFIA Prize, 2014

Reviewing of PhD or habilitation (international)– S. Carrino, University of Fribourg, Switzerland, 2014– D. Devlaminck, Ghent University, Belgium, 2011– F. J. Velasco Alvarez, Malaga University, Spain, 2012– J. M. Antelis, University of Zaragoza, Spain, 2013– M. K. Goel, EPFL, Switzerland, 2013– M. Duvinage, University of Mons, Belgium, 2014– I. Gonzalez-Diaz, Univ. de Madrid, 2011

Reviewing of PhD or habilitation (national)– X. Granier, University of Bordeaux, 2009– L. Barthe, University of Toulouse, 2011– R. Chaines, University of Lyon, 2011– I. Ihrke, University of Bordeaux, 2012– F. Precioso, ENSEA, 2010– P. Bertolino, Grenoble, 2012– J.-F. Omhover, Lab CPI - Paris, 2014– C. de Rousier, University of Grenoble, 2011– U. Zaldivar, Versailles, LR , 2009– B. Micoud , Lyon, LIRIS, 2009– R. Lerbour , Rennes, IRISA, 2009– T. Stein, Grenoble, LIG, 2010– A. Rahajaniaina, Toulouse, IRIT, 2010– M. Veit, Strasbourg, LSIIT, 2010– N. Esnault, Rennes, IRISA, 2011– P.E. Landes, Grenoble, LIG, 2011– R. Morin, Toulouse, IRIT, 2011– S. Kubicki, Valenciennes, LAMIH, 2011– P. Thebault, Paris, ENSAM, 2013– L. Bennes , Belfort, 2013– F. Delomier , Lyon, Ecole Centrale, 2013– E. Sorita, Bordeaux 2, 2013– E. Chapoulie, Nice , 2014– J. Gilliot, University of Lille, 2014– M. Haydard, University of Evry Val d’Essonne, 2011– A. Letienne, Inst Galilée, 2010– B. Luvison, Univ. Cl-Ferrand, 2010– Y. Li, Eurecom, 2012– C. Zhu, ECL, 2012– Z. Kuala, University of Nantes, 2013


– M. Redi, Eurecom, 2013– S.T. Strat, LIstic, 2013– D.-Ph. Vo, Telecom Paris Tech, 2014– A. Aissaoui, 2014

Membership of PhD/habilitation committee (international)– Boris Reuderink, Twente University, the Netherlands, 2011– Daniel Szolgay, UPPK University, Budapest, Hungary, 2011

Membership of PhD/habilitation committee (national)– X. Granier, Bordeaux, LaBRI, 2009– F. Ababsa, Ivry, IBISC, 2010– T. Boubekeur, Orsay, Mines Paristech, 2012– T. Duval, Rennes, IRISA, 2012– I. Ircke, Bordeaux, LaBRI, 2012– J.M. Cieutat, Bidart, ESTIA, 2013– B. Raffin, Grenoble, LIG, 2009– G. Moreau, Nantes, ECN, 2009– A. Lécuyer, Rennes, IRISA, 2010– C. Essert, Strasbourg, LSIIT, 2011– E. Klinger, Bordeaux 2, Sciences Co, 2013– F. Dècle, Univ. Bordeaux, 2009– S. Knoedel, Univ. Bordeaux, 2009– G. Rivière, Bidart, ESTIA,2009– R. Pacanowski, Univ. Bordeaux, LaBRI, 2009– A. Clay, Bidart, ESTIA, 2009– G. Wallet, Univ. Bordeaux, LSC, 2009– J. Glisse, Univ. Jussieu Paris 6, 2009– J. Baril, Univ. Bordeaux, LaBRI, 2010– M. Charbonneau, Univ. Bordeaux, LSC, 2010– Z. Drey, Univ. Bordeaux, LaBRI, 2010– I. Zendjebil, Univ. Ivry, IBISC, 2010– F. Berthaut, Univ. Bordeaux, LaBRI, 2010– L. Aguerreche, INSA Rennes, 2010– R. Skowronski, Bidart, ESTIA, 2011– O. Hugues, Bidart, ESTIA, 2011– S. Videau, INSA Toulouse, 2011– S. Tripodi, Univ. Brest, 2011– F. Larrue, Univ. Bordeaux 2, 2011– A. Martinet, Univ. Lille 1, 2011– S. Hilaire, INSA Rennes, 2011– L. Georges, INSA Rennes, 2012– A. Cohé, Univ. Bordeaux, 2012– C. Fleury, Univ. Rennes, IRISA, 2012– S. He, Nantes, Ecole Centrale, 2012– M. Dejos, Univ. Bordeaux 2, Sciences Co, 2012– N. Mellado, Univ. Bordeaux 1, LaBRI, 2012– A. Cohé, Univ. Bordeaux 1, LaBRI, 2012


– A. Bursiuc, Mines ParisTech, 2012– A. Bernhardt, Grenoble, 2013– V. Todoroff, ONERA Toulouse, 2013– A.-A. Oumarou, Univ. Rennes, 2013– J. Laviole, Univ. Bordeaux 1, LaBRI, 2013– P. Arvin-Pala, Univ. Bordeaux 2, 2013– R. Trachel, Univ. Nice-Sophia Antipolis, 2014– A. Newson, Telecom Paritech & Technicolor Research Rennes, 2014– E. Chapoulie, Univ. Nice-Sophia Antipolis, 2014


Projects (international)– X-media, Demcare, DOTNAC FP7 European projects– V-MusT.net, FP7 NoE, “Virtual Museum Transnational Network”– PhDs co-supervision, Univ. PKKU, Budapest, Hongrie– PhDs co-supervisions, Univ. de Sfax, Tunisie– PhDs co-supervision, Univ. de Bristol, UK– Ph.D co-supervision, McGill University, Canada– Collaboration with Univ. of Shieffeld– Collaboration with Univ. of Ljubliana– Collaboration with ITI-CERTH (Greece)– Collaboration with DCU (Ireland)– Collaboration with LTU (Sweden)– Collaboration with Lomonosov University (Moscow)– JST - CNRS Project, CNRS, “Improving the VR experience”, LSSIIT & Bunraku - IRISA & TokyoUniversity & Keio University & Osaka University, 2008-2011

– Associated Team: Bird, INRIA-DREI, “Interactions between Real and Virtual Worlds”, Bunraku - IRISA& State Key Labo of CAD&CG, 2008-2011,

Projects (national)– ALTA, ANR, “Analysis of Light Transport and Applications”, 2011-2015– PEPII - Institut Jacques Monod, 2010-2012– ANR -Tomatoflux - INRA, 2007-2010– ANR, GREYC,Caen– ANR, LORIA, Nancy– ANR, Artémis, Paris– ANR Digicoc, BNF, Paris– ANR Digicoc, Gest-form, Bordeaux– ANR Digicoc, L3I Univ. La Rochelle– ANR Digicoc, LITIS Univ. Rouen– ANR Digicoc LI Univ.Tours– ANR Digidoc, Arkhênum– ANONYMA et ACORSEN projects, TELEM (Université Bordeaux Montaigne), Bordeaux, 2013-– IPB Project, IMS, 2012– IPB Project, IMB, 2012– ANR, SeARCH, 2009-2013– ANR DIADEMS, 2012-2015


– ANR DREAM– FUI SIMC 2000, 2011-2014– ANR Instinct, 2009-2012– PIA Villes transparentes, 2012-2014– ANR Partge, 2007-2010– ANR DALIA, 2007-2010– ANR Icos-HD,2006-2010– ANR IMMED, 2010-2014– ANR TACIT, 2011-2015– Aquitaine Council ACORSENS, 2013-2016– PEPS IDEX/CNRS ANONYMA, 2013-2014– Idex Project SEDUCTION, 2014-2015– Idex Project TRAIL HR-DTI ANR-10-LABX-57, 2013-2016

Joint publications (international)– University of Bristol– Université of Lisboa– University of Weimar– Brooks University, Oxford– M. Nakano, UNAM, Mexico– O. Hadar, Ben Gurion Nagev University– B. Lovell, Queensland University,– C. Ben Amar, Sfax University– V. Caselles, Pompeu Fabra University, Barcelona, Spain– G. Facciolo, Pompeu Fabra University, Barcelona, Spain– P. Gargallo, Barcelona Media, Barcelona, Spain– A. Hervieu, Barcelona Media, Barcelona, Spain– J. V. Manjon, Universitat Politècnica de València, Valencia, Spain– L. Martí-Bonmatí, Hospital Quirón Valencia, Valencia, Spain– M. Robles, Universitat Politècnica de València, Valencia, Spain– R. Sadek, Pompeu Fabra University, Barcelona, Spain– L. Concha, Institute of Neurobiology, National Autonomous University of Mexico, Querétaro, México– K. Leung, University College of London, London, UK– D. Rueckert, Imperial College London, London, UK– J. V. Halnal, King’s College London, London, UK– R. Ostergaard, University of Aalborg, Aalborg, Denmark– J.-S. F. Eskildsen, Aarhus University, Aarhus, Denmark– D. L. Collins, McGill University, Montreal, Canada– D. Arnold, McGill University, Montreal, Canada– V. Fonov, McGill University, Montreal, Canada– E. Ruthazer, McGill University, Montreal, Canada– B. Aubert-Broche, McGill University, Montreal, Canada– S. Stifani, McGill University, Montreal, Canada– N. Stifani, McGill University, Montreal, Canada– J. C. Pruessner, Douglas Mental Health University, Montreal, Canada– R. Del Maestro, Brain Tumour Research Centre, Montreal, Canada– M. Descoteaux, SCIL, Sherbrook, Canada– I. Reinertsen, The Foundation for Scientific and Industrial Research, Norway


– M. Styner, UNC Chapel Hill, US– A. Buades, Université Paris Descartes, Paris, France

Joint publications (national)– BNF, Paris, France– UMR619 Biologie du Fruit INRA bordeaux– P. Hellier, INSERM: U746 – CNRS : UMR6074 – INRIA – Univ. Rennes 1, Rennes, France– X. Morandi, INSERM: U746 – CNRS : UMR6074 – INRIA – Univ. Rennes 1, Rennes, France– C. Barillot, INSERM: U746 – CNRS : UMR6074 – INRIA – Univ. Rennes 1, Rennes, France– C. Haegelen, INSERM: U746 – CNRS : UMR6074 – INRIA – Univ. Rennes 1, Rennes, France– P. Jannin, INSERM: U746 – CNRS : UMR6074 – INRIA – Univ. Rennes 1, Rennes, France– D. Garcia-Lorenzo, L’Institut du Cerveau et de la Moelle Épinière, Paris, France– M. Allard, INCIA, Bordeaux, France– G. Catheline, INCIA, Bordeaux, France– B. Hiba, RMSB, Bordeaux, France– O. Periot, INCIA, Bordeaux, France– J-F. Aujol, IMB, Bordeaux, France– N. Papadakis, IMB, Bordeaux, France– O. Lézoray, Univ. Caen, France– A. Elmoataz, Univ. Caen, France– X. Desquesne, Univ. Caen, France– M. Hidane, Univ. Caen, France– V. Roullier, Univ. Caen, France– S. Bougleux, Univ. Caen, France– R. Mégret, IMS, Bordeaux, France– H. Coqueugniot, PACEA, Bordeaux, France– O. Dutour, PACEA, Bordeaux, France– P. Mounaix, LOMA, Bordeaux, France

Other collaborations (international)

Other collaborations (national)– IMB, Bordeaux– Lysic, Univ. Bretagne Occidentale, Brest– IBISC, Univ. Evry.– BiO3P INRA, Rennes– V. Lespinet-Najib, IMS, Bordeaux, France– C.-A. Deledalle, IMB, Bordeaux, France– C. Dossal, IMB, Bordeaux, France– P. Arias, Pompeu Fabra University, Barcelona, Spain

Research visitors (international)– Dr. Zhang Hongxin, State Key Lab of CAD & CG - Zhejiang University, China– Vincent Oria, NJIT, USA– O. Hadar, Ben Gurian Nagev University, Israel– P. Arias, Pompeu Fabra University, Barcelona, Spain– J. V. Manjon, Universitat Politècnica de València, Valencia, Spain– D. L. Collins, McGill University, Montreal, Canada

Research visitors (national)


– A. Newson, Telecom Paritech & Technicolor Research, Rennes, France

Research visits (international)– Veszprem University, Hungary– NJIT, USA– Carnegie Melon, USA– Klagenfurt University Austria,– Sussex University, UK– Sfax University, Tunisia– Imperial College London, UK– University of Valencia, Spain– Children’s National Medical Center, Washington, USA– MacGill University, Canada

Research visits (national)– Technicolor Research, Rennes, France


Industrial contracts– Telespazio (Contract– Audemath (CIFRE)– Adasis (CIFREx2)– Mirane (CIFRE)– Widmee (ADERA)– gestform (CIFRE)

Contributions to professional journals and overview publications– Les réseaux biochimiques", Systemics Biology Standards,Chapter 7– Visual information Indexing and Retrieval, Springer, 2013– Information Fusion in Computer vision, Springer, 2014

Reports for decision makers– Report for the Bretagne Regional Council– Report for Montpellier Regional Council

Contributions to standards

Collaborations outside of universities– Audemath– Mirane– Adasis– Widmee– VisionScope– INA– Technicolor Research– GE France

Start-ups– SIMBALS



Learned society, federation (international) Learned society, federation (national) Scientific pop-

ularization, dissemination of scientific culture– Bordeaux, Fête de la science, "Immersive Music", 2009– Bordeaux, LaBRI - Multimedia Thursdays, "Immersive Live-looping", 2010– Basque County, TEDx, "L’interaction tangible", 2010– Paris, Palais de la Découverte, "Un chercheur, une manip", 2011– Paris, Cité des Sciences - "Utiliser son activité cérébrale pour contrôler un ordinateur : le point sur lesinterfaces cerveau-ordinateur", "Les Machines peuvent-elles imiter le cerveau humain ?" conference, 2011

– Bordeaux, Fête de la science, "Navidget", 2011– Bordeaux, Cap-Sciences, "Numériquement votre", 2011– Talence, Inria Uni-thé ou café, "Quand le cerveau prend la main", 2011– Toulouse, Déjeuner sur Web, "Les Interfaces cerveau-ordinateur", 2011– Bruxelles, Musée Royal, "Du Nil à Alexandrie. Histoires d’eaux" exposition, 2012– Bordeaux, "Ad Arenas" exposition, display of the 3D print of Palais Gallien, 2012– Bordeaux, Fête de la Science, “Devenez les Indiana Jones de la 3D”, 2012– Gotheborg (Sweden), Science Festival, "Mind-Shooter », 2012– Amsterdam, Allard Pierson Museum, "Eternal Egypt" exposition, 2013– Basque Country,TedX, "l’archéologue du futur", 2013– Paris, Cité des Sciences, "Utiliser son cerveau pour contrôler une machine", 2013– Talence, Nuit des chercheurs, "Demonstration d’interfaces cerveau-ordinateur", 2013– Bordeaux, Cap-Sciences, Cervorama exposition, "Le cerveau au commandes", 2013– Bordeaux, "Interfaces cerveau-ordinateur et homme augmenté" exposition, "Neurotechnologies: vers unhomme augmenté?" conference, 2013

– Télématin, France 3, IMMED and Demcare projects, November 2 2013– The Devil Is In The Details: Predicting Alzheimer’s, ZoomerMag, Sept 2013

Publications for large audience– P. Guitton, "Ces surfaces qui nous entourent", Interstices, 2009– P. Guitton, "Une bonne interface, c’est une interface conviviale", Interstices, 2010– N. Couture. "La Réalité augmenté" ,"La gazette" d’Audiens, page 15, 2010– P. Reuter, N. Mellado, X. Granier, I. Hairy, R. Vergnieux, N. Couture, "Semi-automatic 3D Acquisitionand Reassembly of Cultural Heritage: The SeARCH Project". ERCIM News 86 : 12-13, 2011

– F. Dufour, M. Hachet, G. Giraudon, P. Guitton, T. Vieville, "Comment utiliser le 3.0 pour que notre MINFsoit ubiquitaire, participatif et attractif ?", Vers un musée de l’informatique et de la société numérique,Paris, I. Astic editor, 2012

– M. Hachet, B. Martin, "Interaction Hommes-Machines : une histoire de 30 ans" Inriality, 2013– M. Hachet, C. Castro, "Arrêtez de regarder la 3D, prenez-en le contrôle !" Inriality, 2013– M. Hachet, "Quand la réalité virtuelle rencontre les surfaces tactiles", Interstices, 2013– F. Lotte, "Idée reçue : Grâce au numérique, on peut lire dans les pensées", Interstices, 2013– Interview, France Inter, ANR SeARCH, 2012– 2 Interviews for 3dvf.fr website, 2012– Le Monde and Science Magazine, Articles on ANR SeARCH project, 2012– New Scientist, FotoIntern, Gizmodo, articles on KaleidoCam project, 2013– Computational Plenoptic Imaging, DAGM tutorial, organizer, 2013– Computational Fabrication and Display of Material Appearance, EG STAR, 2013– Optimization Techniques in Computer Graphics, EG Tutorial, organizer, 2014


F.2.4 Master, predoc and postdoc researchers– Joao-Pedro Berti-Ligabo, master internship, 2014– Dennis Wobrock, master internship, 2014– Morgane Sueur, master internship, 2014– Julia Schumacher, master internship, 2014– Jean Bui-Quang, master internship, 2014– Damien Clergeuad, master internship, 2014– Aurélien Appriou, master internship, 2014– Camille Jeunet, master internship, 2013– Leonard Pommerau, master internship, 2013– Pierre-Marie Plans, master internship, 2013– Thomas Hume, master internship, 2012– Jonathan Aceituno, master internship, 2011– Arash Kian, master internship, 2009– Olivier Augerau, master internship, 2009– Samuel Hurel, master internship, 2009– Flavio Bertini, master internship, 2014– Asier Marzo, master internship, 2014– Nicelleta Caramia, master internship, 2013– Jacek Jankowski, master internship, 2012-2014– Florian Larrue, master internship, 2012-2013– Christian Mühl, master internship, 2013-2014– Nicolas Mellado, master internship, 2009– Simon Boyé, master internship, 2009– Evans Bohl, master internship, 2011– Boris Raymond, master internship, 2012– Loïs Mignard-Debise, master internship, 2013– Georges Nader master internship, ,2013– Brett Ridel, master internship, 2013– Michael Morgan, master internship, 2013– Thao. Nguyen, master internship, 2013– Hien Tran The, master internship, 2012– Navailles Jean Paul, master internship, 2011– Tung. Nguyen, master internship, 2009– Hai Minh N., master internship, 2009– S Lorian, master internship, 2001– S. Chassagnes, master internship– J. Hitier, master internship– F. Ben Messaoud, master internship– S. Lorient, master internship– M. Flocard, master internship– X. Pan, master internship– S. Saint-Jean, master internship– R. Giraud, master internship– G. Motyl, master internship– Lucas Ammann, postdoc, 2010-2011


– Hichem Barki, postdoc, 2011-2012– Ramon Hegedüs, postdoc, 2013-2014,– L. Paulhac, postdoc, 2011-2012– M. Mizotin, postdoc– I. Gonzales - Diaz, postdoc– G. Sargent, postdoc

F.3. FORMAL METHODS 283

F.3 Formal Methods



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[RI5] J. Almeida, J.-C. Costa, and M. Zeitoun, Closures of regular languages for profinite topologies,Semigroup Forum, (2014), pp. 1–21.

[RI6] J. Almeida, J.-C. Costa, and M. Zeitoun, Iterated periodicity over finite aperiodic semigroups,European Journal of Combinatorics, 37 (2014), pp. 115–149.

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[AI38] D. Janin, Walking automata in the free inverse monoid, tech. rep., 2012.

[AI39] R. Moot, Hybrid type-logical grammars, first-order linear logic and the descriptive inadequacy oflambda grammars, tech. rep., 2014.

[AI40] M. Moortgat and R. Moot, Proof nets for the Lambek-Grishin calculus. 2011.

[AI41] A. Muscholl and I. Walukiewicz, Distributed synthesis for acyclic architectures. 2014.

[AI42] O. L. Nguena Timo, A decidable timed mu-calculus for event-recording automata. 2009.

[AI43] O. L. Nguena Timo, The logic WTmu. 2009.

[AI44] O. L. Nguena Timo, Synthèse pour une Logique Temps-Réel Faible, PhD thesis, Université Scienceset Technologies - Bordeaux I, 2009.

[AI45] O. L. Nguena Timo, H. Marchand, and A. Rollet, Automatic test generation for data-flowreactive systems modeled by variable driven timed automata. 2010.

[AI46] O. L. Nguena Timo and P.-A. Reynier, On characteristic formulae for event-recording automata.2009.

[AI47] Y. Oualhadj, P.-A. Reynier, and O. Sankur, Probabilistic robust timed games, tech. rep., 2014.

[AI48] T. Place, Decidable characterizations for tree logics, PhD thesis, ENS Cachan, 2010.

[AI49] C. Retoré, On the system F as a glue language for natural-language compositional-semantics. 2011.


[AI50] C. Retoré, A type theoretical framework for natural language semantics: the Montagovian generativelexicon, tech. rep., 2013.

[AI51] S. Salvati, Minimalist grammars in the light of logic, tech. rep., 2011.

[AI52] S. Salvati and I. Walukiewicz, Krivine machines and higher-order schemes, tech. rep., 2011.

[AI53] S. Salvati and I. Walukiewicz, Recursive schemes, Krivine machines, and collapsible pushdownautomata, tech. rep., 2012.

[AI54] B. Srivathsan and I. Walukiewicz, An alternate proof of statman’s finite completeness theorem.2010.

[AI55] L. van Rooijen and M. Zeitoun, The separation problem for regular languages by piecewise testablelanguages. 2013.


[AN1] R. Bernard, Analyses de sûreté de fonctionnement multi-systèmes, PhD thesis, Université Scienceset Technologies - Bordeaux I, 2009.

[AN2] P. Bourreau, Jeux de typage et analyse de lambda-grammaires non-contextuelles, PhD thesis, Uni-versité Sciences et Technologies - Bordeaux I, 2012.

[AN3] L. Braud, The structure of orders in the pushdown hierarchy, PhD thesis, Université Paris-Est, 2010.

[AN4] E. Garnaud, Dépendances fonctionnelles : extraction et exploitation, PhD thesis, Université Scienceset Technologies - Bordeaux I, 2013.

[AN5] H. Gimbert and Y. Oualhadj, Automates probabilistes: problèmes décidables et indécidables.Rapport de Recherche RR-1464-09 LaBRI, 2009.

[AN6] F. Kuntz, Une approche basée modèle pour l’optimisation du monitoring de systèmes avioniques rel-ativement à leurs performances de diagnostic, PhD thesis, Université Sciences et Technologies - BordeauxI, 2013.

[AN7] O. Ly and L. Goubin, Sûreté de fonctionnement et sécurité des algorithmes cryptographiques, Multi-system & Internet Security Cookbook (MISC), 42 (2009), p. 6.

[AN8] B. Mery, Modélisation de la Sémantique Lexicale dans le cadre de la théorie des types, PhD thesis,Université Sciences et Technologies - Bordeaux I, 2011.

[AN9] Y. Oualhadj, Le problème de la valeur dans les jeux stochastiques, PhD thesis, Université Scienceset Technologies - Bordeaux I, 2012.

Other software– AltaRica, http://altarica.labri.fr/wp/– Autograph, http://dept-info.labri.u-bordeaux.fr/ idurand/autograph/– Autowrite, http://dept-info.labri.fr/ idurand/autowrite/– Glucose, http://www.labri.fr/perso/lsimon/glucose/– GRAIL, http://www.labri.fr/perso/moot/grail.html– Insight, http://insight.labri.fr/trac– Rhoban, http://rhoban.labri.fr/pub/– Vaucanson, http://www.vaucanson-project.org/– TaPAS/Faster, http://tapas.labri.fr/trac/wiki/FASTer– TChecker, http://www.labri.fr/perso/herbrete/tchecker/– Visidia, http://visidia.labri.fr//html/home.html


– XLFG, http://www.xlfg.org/

Completed PhDs– Philippe Andouard: Outils d’aide à la recherche de vulnérabilité dans l’implantation d’applications em-barquées sur carte à puce (2006 - 2009, CIFRE SERMA, O. Ly, M. Mosbah).

– Asma Ben Zakour: Extraction des utilisations typiques à partir de données hétérogènes historisées en vued’optimiser la maintenance d’une flotte de véhicules (2009 - 2012. CIFRE 2Moro, S. Maabout, M. Mosbah,M. Sistiaga).

– Romain Bernard: Analyses de sûreté de fonctionnement multi-systèmes (2006–2009, CIFRE AIRBUS, P.Bieber, A. Griffault, M. Zeitoun).

– Pierre Bourreau: Jeux de typage et analyse de lambda-grammaires non-contextuelles (2007-2012, CordiS,Ch. Retoré S. Salvati)

– Fares Chucri : Exploiting Model Structure in CEGAR Verification Method (2007 - 2012, A. Griffault, G.Sutre, I. Walukiewicz).

– Vincent Filou: Une étude formelle de la théorie des calculs locaux à l’aide de l’assistant de preuve Coq(2009-2012, M. Mosbah et P. Castéran).

– Eve Garnaud: Dépendances fonctionnelles : extraction et exploitation (2010 - 2013, S. Maabout, M.Mosbah).

– Hédi Hamdi: Vérification de politiques de sécurité dans un système distribué (2004 - 2009, Cotutelle Tunis,A. Bouhoula, M. Mosbah).

– Alexander Heussner : Vers la Vérification de Propriétés de Sureté pour des Systèmes Infinis Communicants: Décidabilité & Raffinement des Abstractions (2008-2011, A. Muscholl, G. Sutre et J. Leroux).

– Fabien Kuntz : Une approche basée modèle pour l’optimisation du monitoring de systèmes avioniquesrelativement à leurs performances de diagnostic (2009-2013, CIFRE, A. Griffault, S. Gaudan, C. Sannino,A. Muscholl).

– Anais Lefeuvre: Sémantique des temps du français: une formalisation compositionnelle (2009-2014, C.Rétoré, M. Gaio)

– Bruno Mery : Une modélisation de la sémantique lexicale dans le cadre de la théorie des types (2006-2011Ch. Bassac, Ch. Retoré)

– Omer Landry Nguena Timo: Controller synthesis of weak real-time systems (2003-2009, A. Arnold, I.Walukiewicz)

– Youssouf Oualhadj : Algorithmique des jeux à information imparfaite (2009-2012, H.Gimbert, A. Muscholl).– Noemie-Fleur Sandillon-Rezer: Apprentissage de grammaires catégorielles : Transducteurs d’arbres etclustering pour induction de grammaires catégorielles (2010-2013, C. Rétoré, R. Moot)

– B. Srivathsan: Abstractions for Timed Automata (2009-2012, F. Herbreteau, I. Walukiewicz).– Céline Thuillet: Evaluation de composants cryptographiques dans la PMR (2008 - 2011, CIFRE EADS,O. Ly, M. Mosbah).

– Mohamed Tounsi: Preuves des algorithmes distribués par raffinement (2009-2012, M. Mosbah).– The Quang Tran: Unfolding Concurrent Well-Structured Transition Systems (2004-2009, F. Herbreteau,G. Sutre, I. Walukiewicz).

including cotutelle PhDs (international)– Wafa Ben Jaballah: Etude d’algorithmes distribués dans des réseaux mobiles (2011-2014, cotutelle, M.Mosbah. H. Youssef).

– Alessandro Facchini: A study on the expressive power of some fragments of the modal mu-calculus (2007-2010, cotutelle Université de Lausanne, J. Duparc, I. Walukiewicz).

– Monia Loulou: Approche Formelle pour la Spécification la Vérification et le Déploiement des Politiques deSécurité Dynamiques dans les Systèmes à base d’Agents Mobiles (2006-2010, cotutelle U. Sfax, M. Jmaiel,M. Mosbah).

Completed habilitations– Jérôme Leroux, Presburger Counter Machines, 2012– Olivier Ly, Un parcours de recherche des méthodes formelles aux robots humanoïdes, 2012



Steering committee (international)– FICS (Fixpoints in Computer Science): I. Walukiewicz (2009- )– FOSSACS (Foundations of Software Science and Computation Structures): I. Walukiewicz (2011- )– GAGTA (Geometrical and Asymptotic Group Theory and Applications), P. Weil (2011-2015)– GAMES (ESF Research Networking Programme): I. Walukiewicz (2008-2013)– Highlights of Logic, Games and Automata: H. Gimbert (2013 - )– ICGT (International Conference on Graph Transformations): M. Mosbah (2009 - 2014)– Logical Aspects of Computational Linguistics: Ch. Retoré (2011- )– STACS (Symposium on Theor. Aspects of Computer Science): A. Muscholl (2008-2014), co-president2012-2014

– STACS (Symposium on Theor. Aspects of Computer Science): P. Weil (2005-2011), co-president 2008-2011

Steering committee (national)– EPIT (Ecole de Printemps d’Informatique Théorique): A. Muscholl (2009-2015)– JFLA (Journées Francophones des Langages Applicatifs): P. Castéran (2008-2014)

Program committee (international)– ACL’10 (Association for Computational Linguistics): C. Retoré– AFL’11 (Automata and Formal Languages): P. Weil– AISS’14 (Algorithmics of Infinite State Systems), satellite workshop of CSL/LICS 2014: S. Salvati– AMIL’10 Advances in Modal Logic: I. Walukiewicz– ATVA’11 (12th International Symposium on Automated verification) : J.Leroux– CAI 2013 (Algebraic Informatics) : B. Courcelle– CIAA’13 (18th International Conference on Implementation and Application of Automata): S. Lombardy– CIAA’09 (14th International Conference on Implementation and Application of Automata): A. Muscholl– CSLP’12 (International Workshop Constraint Solving and Language Processing): C. Retoré– CSLP’12 (International Workshop on Contraint Solving and Language Processing): S. Salvati– CSLP’14 (8th Constraint Solving and Language Processing): C. Retoré– CSLP’14 (8th International Workshop on Contraint Solving and Language Processing): S. Salvati– CSL/LICS’14 (Computer Science Logic/Symposium on Logic in Computer Science: I. Walukiewicz– CSR’12 (International Computer Science Symposium in Russia): A. Muscholl– CSR’11 (International Computer Science Symposium in Russia): I. Walukiewicz– DLT’11 (Developments on Language Theory): A. Muscholl– DLT’09 (Developments on Language Theory): G. Sénizergues– FARM’14 (Workshop on Functional Art, Music, Modeling and Design): D. Janin– FCT’09 (International Symposium on Fundamentals of Computation Theory): I. Walukiewicz– FG’11 (Formal Grammar): C. Retoré– FG’12 (Formal Grammar): C. Retoré– FG’13 (Formal Grammar): C. Retoré– FG’14 (Formal Grammar): C. Retoré– FoSSaCS’11 (International Conference on Foundations of Software Science and Computation Structures):I. Walukiewicz

– FSTTCS’12 (IARCS Annual Conference on Foundations of Software Technology and Theoretical ComputerScience): A. Muscholl


– FSTTCS’09 (IARCS Annual Conference on Foundations of Software Technology and Theoretical ComputerScience): A. Muscholl

– GandALF’12 (3rd International Symposium on Games, Automata, Logics and Formal Verification): G.Puppis

– GandALF’12 (3rd International Symposium on Games, Automata, Logics and Formal Verification): A.Muscholl

– International Conference on Geometric, Combinatorial and Dynamic Aspects of Semigroup and GroupTheory: P. Weil

– Highlights’14 (Highlights on Logic, Games and Automata): A. Muscholl– Highlights’13 (Highlights on Logic, Games and Automata): A. Muscholl– ICALP’12 (Int. Colloquium on Languages, Automata and Programming): I. Walukiewicz– ICALP’11 (Int. Colloquium on Languages, Automata and Programming): A. Muscholl– ICALP’09 (Int. Colloquium on Languages, Automata and Programming): A. Muscholl– ICDT’12 (International Conference on Database Theory): A. Muscholl– ICTSS’11 (23rd IFIP Int. Conference on Testing Software and Systems): A. Rollet– LACL’14 (8th International Conference on Logical Aspects of Computational Linguistics): C. Retoré– LACL’14 (8th International Conference on Logical Aspects of Computational Linguistics): S. Salvati– LACL’12 (7th International Conference on Logical Aspects of Computational Linguistics): S. Salvati– LACL’12 (7th International Conference Logical Aspects of Computational Linguistics): C. Retoré– LACL’11 (6th International Conference Logical Aspects of Computational Linguistics): C. Retoré– LATA’11 (6th International Conference on Language and Automata Theory and Applications) : P. Weil– LATA’13 (7th International Conference on Language and Automata Theory and Applications) : S. Lom-bardy

– LICS’13 (IEEE Symposium on Logic in Computer Science): A. Muscholl– LICS’11 (IEEE Symposium on Logic in Computer Science): I. Walukiewicz– LICS’10 (IEEE Symposium on Logic in Computer Science): A. Muscholl– MFCS’09 (Mathematical Foundations of Computer Science): A. Muscholl– MOL’13 (Mathematics of Language): S. Salvati– MOL’12 (Mathematics of Language): S. Salvati– PODS’14 (ACM SIGMOD-SIGACT-SIGART Symposium on Principles of Database Systems): G. Puppis– RP’11: (5th international workshop on reachability problems): J.Leroux– RP’12: (6th international workshop on reachability problems) : J.Leroux– RP’13: (7th international workshop on reachability problems) : J.Leroux– RTA-TLCA’14 (Joint 25th International Conference on Rewriting Techniques and Applications and 12thInternational Conference on Typed Lambda Calculi and Applications): S. Salvati

– SOFSEM’13 (International Conference on Current Trends in Theory and Practice of Computer Science):I. Walukiewicz

– SOFSEM’09 ((International Conference on Current Trends in Theory and Practice of Computer Science):I. Walukiewicz

– STACS’13 (Symposium on Theor. Aspects of Computer Science): M. Zeitoun– STACS’12 (Symposium on Theor. Aspects of Computer Science): I. Walukiewicz– TACAS’10 (International Conference on Tools and Algorithms for the Construction and Analysis of Sys-tems): A. Muscholl

– TAG’12 (11th International Workshop on Tree Adjoing Grammars and Related Formalisms): S. Salvati– TCS’14, IFIP Theoretical Computer Science: G. Sénizergues– TCS’12, IFIP Theoretical Computer Science: I. Walukiewicz– TIME’14 (21st International Symposium on Temporal Representation and Reasoning): G. Puppis– TTNLS’14 (Type theory and natural language semantics): C. Retoré


– WoLLIC’13 (20th Workshop on Logic, Language, Information and Computation): G. Puppis– WoLLIC’12 (19th Workshop on Logic, Language, Information and Computation): S. Salvati

Program committee (national)– TALN’09 Traitement Automatique du Langage Naturel: C. Retoré– TALN’11 Traitement Automatique du Langage Naturel: C. Retoré– TALN’12 Traitement Automatique du Langage Naturel: C. Retoré– TALN’13 Traitement Automatique du Langage Naturel: C. Retoré– TALN’14 Traitement Automatique du Langage Naturel: C. Retoré

Presidence of program committee (international)– ESSLII’09, 21st European Summer School in Logic, Language and Information: C. Rétoré– GCM’14, Fifth International Workshop on Graph Computation Models: M. Mosbah– FoSSaCS’14, 17th International Conference on Foundations of Software Science and Computation Struc-tures: A. Muscholl

– GandALF’13, 4th International Symposium on Games, Automata, Logics and Formal Verification: G.Puppis, T. Villa

– SOFSEM’10, 36th International Conference on Current Trends in Theory and Practice of ComputerScience: A. Muscholl, D. Peleg

Organizing committee (conferences, seminaries, schools...) (international)– EPIT’11, GAMES-Spring school, Carcans-Maubuisson, May 23-27, 2011 (H. Gimbert)– MBSAW’12, Model-Based Safety Assessment Workshop, Bordeaux (G. Point)– Workshop Automata, Concurrency and Timed Systems (ACTS), Chennai, 2009 (P. Weil)– Workshop en l’honneur de Bruno Courcelle, June 18-20, 2012, Bordeaux (P. Castéran, M. Mosbah, G.Sénizergues)

Presidence of organizing committee (international)– ACG@10 ten years of Abstract Categorial Grammars, Bordeaux, 2011 (S. Salvati)– Workshop on Automata, Logic, Formal Languages and Algebra (ALFA), satellite workshop of ICALP’13,Riga (P. Weil)

– Workshop en l’honneur de Bruno Courcelle, June 18-20, 2012, Bordeaux (A. Muscholl)– EPIT’11, GAMES-Spring school, Carcans-Maubuisson, May 23-27, 2011 (I. Walukiewicz)– Final open conference of ANR project FREC, CIRM Marseille, 2014 (G. Sénizergues)– Fifth International Workshop on Graph Computation Models (GCM) 2014 (M. Mosbah)– LCS’10, workshop "Logic, categories, semantics", Bordeaux (C. Retoré)– MBSAW’12, Model-Based Safety Assessment Workshop, Bordeaux (A. Griffault)– OPODIS (International Conference on Principles of Distributed Systems) 2010, Tunisia (M. Mosbah)– RP’12, 6th International workshop on Reachability Problems, September 17-19, 2012, Bordeaux (J. Leroux)– Shonan Summer School on the Coq Proof Assistant, Japan, 2014 (P. Castéran)

Journal editorial board (international)– Discrete Mathematics and Theoretical Computer Science, A. Muscholl (2001 - )– Discrete Mathematics and Theoretical Computer Science, P. Weil (1996-)– Fundamenta Informaticae, I. Walukiewicz (2008- )– Groups, Complexity and Cryptography, P. Weil (2007-)– Information and Computation, B. Courcelle (until 2013)– Information and Computation, G. Sénizergues (2013–)– Information and Processing Letters, A. Muscholl (2008- )– Journal of Logics and their applications, C. Retoré (2014-)– Leibniz International Proceedings in Informatics, P. Weil, president (2009-2015)


– Logical Methods in Computer Science, B. Courcelle (2005- )– RAIRO- Theoretical Informatics and Applications, P. Weil (2008-)

Journal editorial board (national)– La Gazette des mathématiciens, C. Rétoré, (2008-)’– Technique et Science Informatiques, A. Griffault (2008-2012)– Traitement automatique des langues, C. Rétoré, editor-in-chief (2004-2009)

Research animation (international)– IFIP WG2.2 Formal description of programming concepts: I. Walukiewicz (president)

Research animation (national)– GDR GPL “Génie de la Programmation et du Logiciel” : P. Castéran, co-head of GT “Langages TYpeset Preuves”

– GDR IM “Informatique-Mathématique” : A. Muscholl, co-head of GT “Automata, Logic, Games andAlgebra”


Presidence of expert committee (national)– AERES evaluation LIX 2013 (Weil, president)

Membership in expert committee (national)– AERES evaluation IBISC (H. Gimbert)– AERES evaluation Ecole doctorale Marseille 2011 (M. Mosbah)– AERES evaluation SAMOVAR 2013 (M. Mosbah)– AERES evaluation LIP6 (C. Retoré)– AERES evaluation LORIA, 2012 (M. Zeitoun)– Member of CNU section 27, 2011-2015 (M. Mosbah)– Hiring committee for an assistant professor, U. Paris Diderot, 2010 (H. Gimbert)– Hiring committee for an assistant professor (chaire), U. Paul Sabatier Toulouse, 2011 (A. Griffault)– Hiring committee for an assistant professor, IPB Bordeaux, 2011 (A. Griffault)– Hiring committee for an assistant professor, IRIT ENSEEIHT, 2012 (A. Griffault)– Hiring committee for an assistant professor, U. Bordeaux 1, 2012 (A. Griffault)– 2 hiring committees for assistant professors, IPB Bordeaux, 2010 (F. Herbréteau)– Hiring committee for an assistant professor, U. Aix-en-Provence, 2012, (J. Leroux)– Hiring committee for an assistant professor, U. Bordeaux 1, 2011 (J. Leroux)– Hiring committee for an assistant professor, U. Paris Diderot, 2010 (J. Leroux)– Hiring committee for a full professor, U. de Lorraine, 2009 (M. Mosbah)– Hiring committee for a full professor, IPB Bordeaux, 2012, 2013 (M. Mosbah)– Hiring committee for an assistant professor, IPB Bordeaux, 2010 (M. Mosbah)– Hiring committee for a full professor, INP Toulouse, 2012 (M. Mosbah)– Hiring committee for an assistant professor, U. Paris Diderot, 2010 (A. Muscholl)– Hiring committee for an assistant professor (chaire), U. Bordeaux, 2009 (A. Muscholl)– Hiring committee for a research assistant INRIA, INRIA Bordeaux, 2009 (A. Muscholl)– Hiring committee for an assistant professor, IUT U. Bordeaux 1, 2011 (A. Muscholl)– Hiring committee for a full professor, U. Paris 13 (C. Retoré)– Hiring committee for an assistant professor, U. Paris Sud, 2013, 2014 (A. Rollet)– Hiring committee for an assistant professor, U. Toulouse 3, 2010 (A. Rollet)– Hiring committee for an assistant professor, U. Versailles Saint Quentin, 2009 (A. Rollet)


– Hiring committee for an assistant professor, IUT U. Bordeaux 1, 2013 (M. Zeitoun)– Hiring committee for an assistant professor, U. Bordeaux 1, 2012 (M. Zeitoun)– Hiring committee for a full professor, U. Rennes 1, 2010 (M. Zeitoun)

Individual expert (reviewer)– Evaluation ANR 2011 (A. Griffault)– Evaluation ANR Blanc (C. Retoré)– Evaluation ANR Contint (C. Retoré)– Evaluation ANR Masses de Données (C. Retoré)– Evaluation ANR Blanc 2012 (P. Weil)– Evaluation ANR Blanc 2011 (P. Weil)– Evaluation ANR Blanc 2010 (P. Weil)

Individual expert (reviewer), international– Evaluation OTKA (Hungarian Scientific Research Fund), 2013 (S. Lombardy)– Evaluation FWF (Autriche), 2012 (M. Mosbah)– Evaluation Israel Science Foundation, 2010 (A. Muscholl)– Evaluation Netherlands Organisation for Scientific Research (NWO), 2009 (A. Muscholl)– Evaluation DFG, Allemagne, 2013 (A. Muscholl)– Evaluation CONICYT (Chili), 2013 (P. Weil)– Evaluation FSF (Suisse), 2009 (P. Weil)– Evaluation OTKA (Hungarian Scientific Research Fund), 2009 (P. Weil)– Evaluation NSA (USA), 2009 (P. Weil)– Evaluation NSERC (Canada), 2012 (P. Weil)

Membership in selection board– Jury d’admission CR INS2I, 2012 (P. Weil)– Jury d’admission CR INS2I, 2011 (P. Weil)– Jury d’admission DR CNRS, 2011 (P. Weil)

Membership in prize jury– Evaluation IBM prize (Belgique), 2010 (J. Leroux)– EATCS Fellows Committee, 2014-2017 (A. Muscholl, president 2014)– Prize Board of Witold Lipski Prize (I. Walukiewicz)– Evaluation PhD prize GDR GPL 2012 (M. Mosbah)– Evaluation PhD prize GDR GPL 2013 (M. Mosbah)

Reviewing of PhD or habilitation (international)– Thomas Brazdil, HDR Masaryk University, Brno, 2012 (Walukiewicz)– Tomasz Jurdzinski, HDR Wroclaw University, 2009 (Walukiewicz)– Manfred Kufleitner, HDR Universität Stuttgart, 2013 (Weil)– Christof Löding, HDR RTWH Aachen, 2009 (Walukiewicz)

– Nizar Ben Neji, Tunis 2012 (Mosbah)– Prakash Chandrasekaran, CMI Chennai, 2009 (Muscholl)– Gaëlle Fontaine, Amsterdam University, 2010 (Walukiewicz)– Sonia Gaied, Tunis, 2013 (Mosbah)– Amaldaev Manuel, CMI Chennai, 2011 (Muscholl)

Reviewing of PhD or habilitation (national)– Anne Bouillard, HDR ENS Paris 2014 (Lombardy)– Thomas Colcombet, HDR LIAFA, 2014 (Walukiewicz)


– Laurent Doyen, HDR ENS Cachan, 2012 (Walukiewicz)– Thierry Géraud, HDR U. Paris Est, 2012 (Lombardy)– Mathieu Lafourcade, HDR Université Montpellier 2, 2012 (Retoré)– Malika More, HDR LAIC-LIMOS, 2009 (Muscholl)– Myriam Quatrini, HDR I2M Aix-Marseille Université, 2014 (Retoré)

– Nabil Ajam, Rennes, 2010 (Mosbah)– Bertrand Boisvert, Université Toulouse 3, 2013 (Retoré)– Florent Bouchy, ENS Cachan, 2009 (Zeitoun)– Romain Brenguier, ENS Cachan, 2012 (Gimbert)– Romain Brenguier, ENS Cachan, 2012 (Muscholl)– Simon Clavière, U. Versailles, 2012 (Mosbah)– Aiswarya Cyriac, ENS Cachan, 2014 (Muscholl)– Axel Haddad, LIAFA, 2013 (Walukiewicz)– Loic Jezéquel, U. Rennes 1, 2012 (Zeitoun)– Loic Kervajan, Université de Provence, 2011 (Retoré)– Fatma Krichen, U. Toulouse, 2013 (Mosbah)– Denis Kupenberg, LIAFA, 2012 (Walukiewicz)– Benjamin Monmège, ENS Cachan 2013 (Lombardy)– Christophe Onambele, Université Paris 8, 2012 (Retoré)– Florent Pompigne, Université de Lorraine, 2013 (Retoré)– Johan Segura Université Montpellier 2, 2012 (Retoré)– Lilia Sfaxi, Grenoble, 2012 (Mosbah)– Nathalie Sznajder, ENS Cachan, 2009 (Walukiewicz)– Camille Vacher, ENS Cachan, 2010 (Walukiewicz)

Membership of PhD/habilitation committee (international)– Alexandre Decan, Université de Mons, Belgique, 2013 (Gauwin)– Marc Ducobu, Université de Mons, Belgique, 2013 (Gauwin)– Alessandro Facchini, U. Lausanne, 2010 (Zeitoun)– Julien Brusten, Université de Liège, 2011 (Leroux)– Jean-François Degbomont, Université de Liège, 2013 (Leroux)

Membership of PhD/habilitation committee (national)– Dominique Archambault, HDR Université Paris 6, 2010 (Retoré)– Nicolas Bedon, HDR Université Paris-Est Marne-la-Vallée, 2010 (Weil)– Anas Abou Elkalam, HDR ENSEEIHT Toulouse, 2009 (Mosbah)– Pascal Desbarats, HDR Bordeaux I, 2010 (Mosbah)– Annie Foret, HDR Université Rennes 1, 2012 (Retoré)– Peter Habermehl, HDR LIAFA, 2009 (Muscholl)– Jérôme Leroux, HDR Bordeaux, 2012 (Muscholl)– Nicolas Markey, HDR ENS Cachan, 2011 (Muscholl)– Cyril Nicaud, HDR Université Paris-Est Marne-la-Vallée, 2010 (Weil)– Macha Nikolski, HDR Université Bordeaux-1, 2009 (Weil)– Lutz Strassburger, HDR Université Paris 7, 2011 (Retoré)– Tayssir Touili, HDR LIAFA, 2009 (Muscholl)– Assalé Adjé, LIX, 2011 (Leroux)– Pierre-Yves Angrand, Telecom ParisTech 2012 (Lombardy)– Rodrigo Assar Cuevas, Université Bordeaux-1, 2011 (A. Griffault)


– Florent Avellaneda, Université de Marseille, 2013 (Leroux)– Paul Bédaride, Université Nancy 1, 2010 (Retoré)– Johann Brault-Baron, Caen, 2013 (Courcelle)– Florent Bouchy, ENS Cachan, 2009 (Leroux)– Pierre Bourhis, INRIA Saclay, 2011 (Muscholl)– Antoine Durand-Gasselin, LIAFA, 2013 (Walukiewicz)– Quentin Enard, Bordeaux I, 2013 (Mosbah)– Mathieu Jamai, Lille, 2013 (Mosbah)– Fabien Kuntz, Bordeaux I, 2013 (Mosbah)– Samir Medjiah, Bordeaux I, 2012 (Mosbah)– O. L. Nguena Timo, U. Bordeaux 1, 2009 (Zeitoun)– Youssouf Oualhadj, U. Bordeaux 1, 2012 (Zeitoun)– Thomas Place, ENS Cachan, 2010 (Zeitoun)– Thomas Place, ENS Cachan, 2010 (Walukiewicz)– Vincent Rabeu, Bordeaux I, 2013 (Mosbah)– Guillaume Rivière, Université Bordeaux-1, 2009 (Weil)– Arnaud Sallabery, Université Bordeaux 1, 2011 (Retoré)– Peter Schrammel, Université de Grenoble, 2012 (Leroux)– Jan Stoecker, INP Grenoble, 2009 (A. Griffault)– A. Sundararaman, ENS Cachan, 2010 (Zeitoun)– Nathalie Sznajder, ENS Cachan, 2009 (Zeitoun)– Wiem Tounsi, Télécom Bretagne, Rennes, 2014, (Mosbah)


Projects (international)– AVeRTS Franco-Indian ICST project, with IIT Bombay, Chennai Mathematical Institute, INRIA Rennes,2014-2018. (F. Herbréteau, I. Walukiewicz)

– GAMES (Games for Design and Verification), ESF Research Networking Programme, 2008-2013. Partners:Vienna University of Technology, Austria; Université Libre de Bruxelles, Belgium; Helsinki Universityof Technology, Finland; RWTH Aachen University, Germany; University of Udine, Italy; University ofLuxembourg, Luxembourg; CWI and University of Amsterdam, The Netherlands; Warsaw University,Poland; Uppsala University, Sweden; EPFL Lausanne, Switzerland; Oxford University, United Kingdom

– LIA Informel (INdo-French FORmal MEthods Lab), CNRS, ENS Cachan, U. Bordeaux, Chennai Math-ematical Institute (CMI), Institute of Mathematical Sciences (IMSc, Chennai) and Indian Institute ofSciences (IISc, Bangalore).

– PHC France-Italy (GALILEE) with University of Padova - Italy “Sécurité de protocoles distribués”, 2014.(M. Mosbah)

– SAFE, Safe Automotive soFtware architEcture, UE project, 2011–2014. (A. Griffault)– Royal Society grant with University of Liverpool “Specification and Verification of Infinite-State Systems:Focus on Data”. 2011-2013. (J. Leroux)

– VAUCANSON2 (Développement de la plateforme Vaucanson), ANR blanc international with Taiwan,2011-2014. (S. Lombardy)

Projects (national)– ANR BINCOA, Symbolic Methods for BINary Code Analysis, ANR ARPEGE, 2009-2012. (A. Vincent)– ANR ExStream, Extensions of stream processing, ANR JCJC, 2014-2018. (O. Gauwin)– ANR FREC, Frontiers of recognizability, ANR BLANC, 2010-2014. (P. Weil)


– ANR Impex, Intégration des sémantiques implicite et explicite dans les développements de systèmes discretsfondés sur la preuve, ANR INSE, 2013-2015. (P. Castéran)

– ANR INEDIT, Interactivité dans l’écriture du temps, ANR CONTINT, 2012-2015. (D. Janin)– ANR LOCI, Locativity and interactivity in logic, linguistics and theoretical computer science), ANR Blanc,2010-2014. (Ch. Rétoré)

– ANR POLYMNIE, Parsing and synthesis with abstract categorial grammars: from lexicon to discourse,ANR CONTINT, 2012-2015. (Ch. Rétoré)

– ANR REACHARD, Taming Hard Reachability Problems for Counter Systems, ANR Blanc (SIMI 2),2011-2014. (J. Leroux)

– ANR Stoch-MC, Modèles stochastiques: passage à l’échelle pour le Model Checking, ANR Blanc, 2014-2018. (H. Gimbert)

– ANR VACSIM, Validation de la commande des systèmes critiques par couplage simulation et méthodesd’analyse formelle, ANR INS 2011-2015. (A. Rollet)

– CoLan PEPS Humanités, Mathématiques, Informatique Complexité et Langage : une étude formelle etexpérimentale des mécanismes de compréhension, 2013-2014. (Ch. Rétoré)

– MARSHAL, FUI project (Fonds Unique Interministériel), 2012-2014. (E. Fleury)– Synthesis of Stream Processors, PEPS CNRS, 2013-2015. (O. Gauwin)– Stochastic Games for Verification, PEPS 2011-2013. (H. Gimbert)

Joint publications (international)– Michele Abrusci, Roma Italy (Retore)– Jorge Almeida, Porto (Zeitoun)– Michael Benedikt, Oxford (Puppis)– Achim Blumensath, Darmstadt (Courcelle)– Bernard Boigelot, Liège (Leroux, Herbreteau)– Mikolaj Bojanczyk, Warsaw U. (Muscholl, Walukiewicz, Place)– Thomas Brihaye, Mons (Gimbert)– Véronique Bruyère, Mons (Gimbert, Gauwin)– Krishnendu Chatterjee, IST Austria (Gimbert)– Lorenzo Clemente, Bruxelles (Herbreteau, Sutre)– Mauro Conti, Padova (Mosbah)– José Carlos Costa, U. Minho (Zeitoun)– Alfredo Costa, U.Coimbra Portugal (Zeitoun)– Volker Diekert, Stuttgart (Muscholl, Weil)– Joost Engelfriet, Leiden U. (Courcelle)– Zoltan Esik, Szeged Hungary (Weil)– Emmanuel Filliot, Bruxelles (Gauwin)– Makoto Kanazawa, NII Tokyo (Salvati)– Daniel Kirsten, Berlin (Lombardy)– Gregory M. Kobele, U. Chicago (Salvati)– Daniel Kroening, Oxford (Leroux)– Manfred Kufleitner, Stuttgart (Weil)– Kim G. Larsen, Aalborg, Denmark (Rollet)– Christof Loeding, Aachen Germany (Walukiewicz)– Angelo Montanari, Udine Italy (Puppis)– Michael Moortgat, Utrecht, Netherlands (Moot)– Damian Niwinski, Warsaw U. (Walukiewicz)– Pawel Parys, Warsaw U. (Walukiewicz)


– M. Praveen, CMI Chennai (Sutre, Leroux)– Sven Schewe, U. Liverpool (Muscholl)– Thomas Schwentick, Dortmund (Muscholl)– Helmut Seidl, Munich (Leroux, Muscholl)– Frederic Servais, Bruxelles (Gauwin)– Pedro Silva, Porto (Weil)– B. Srivathsan, CMI Chennai India (Walukiewicz, Herbreteau)– Howard Straubing, Boston (Walukiewicz)– Zhilin Wu, Academy of Sciences, China (Muscholl, Ly)– Habib Youssef, Sousse Tunisia (Mosbah)

Joint publications (national)– S. Abiteboul, LSV Cachan (Muscholl)– A. Akhavi, Greyc Caen (Lombardy)– M. Amblard, LORIA Nancy (Retore)– G. Audemard, CRIL Lens (Simon)– S. Bardin, CEA Paris (Leroux, Vincent, Ly)– F. Bassino, LIPN Paris-Nord (Weil)– M.P. Béal, LIGM, Paris-Est (Lombardy)– N. Bertrand, IRISA Rennes (Gimbert)– B. Bollig, LSV Cachan (Zeitoun)– P. Bourhis, LIFL Lille (Muscholl, Puppis)– A. Carayol, LIGM Paris-Est (Walukiewicz)– O. Carton, LIAFA, Paris (Lombardy, Puppis)– J.M. Champarnaud, LITIS Rouen (Lombardy)– Th. Colcombet, LIAFA, Paris (Lombardy, Puppis)– J.M. Couvreur, LIFO Orléans (Weil)– Y. Falcone, LIG Grenoble (Rollet)– A. Finkel, LSV Cachan (Leroux, Zeitoun)– P. Gastin, LSV Cachan (Zeitoun)– B. Genest, IRISA Rennes (Gimbert, Muscholl, Walukiewicz)– L. Goubin, PRISM Versailles (Ly)– F. Horn, LIAFA Paris (Gimbert)– T. Jerron, IRISA Rennes (Rollet)– M. Kanté, LIMOS Clermont-Ferrand (Courcelle)– I. Klimann, LIAFA Paris (Lombardy)– J. Mairesse, LIAFA Paris (Lombardy)– D. Mery, LORIA Nancy (Mosbah)– C. Nicaud, LIGM Paris-Est (Weil)– J. Niehren LIFL, Lille (Gauwin)– D. Perrin, LIGM, Paris-Est (Lombardy)– M. Picantin, LIAFA Paris (Lombardy)– S. Pogodalla, INRIA Nancy (Retore)– D. Poitrenaud, LIP6, Paris (Weil)– O. Ponsini, I3S, Nice (Rollet)– P.A. Reynier LIF Marseille (Gauwin)– J. Sakarovitch, ENST Paris (Lombardy)– S. Salva, LIMOS Clermont-Ferrand (Rollet)


– L. Segoufin, LSV Cachan (Place, Muscholl)– J.M. Talbot, LIF Marseille (Gauwin)– S. Tison LIFL, Lille (Gauwin)– W. Zielonka, LIAFA Paris (Gimbert)

Research visitors (international)– Bharat Adsul, IIT Bombay (6 weeks, jun-jul 2013)– Jorge Almeida, Porto (6 months, feb-aug 2012)– Namit Chaturvedi, RWTH Aachen (1 week, mar 2014)– José Carlos Costa, U. Minho (1 week, apr 2012)– Alfredo Costa, U. Coimbra (1 week, jun 2012)– Volker Diekert, Stuttgart (1 month, mar 2011)– Makoto Kanazawa, NII Tokyo (1 month, apr/sep 2011)– Gregory M. Kobele, U. Chicago (1 month, apr-may 2012)– Manfred Kufleitner, U. Stuttgart (1 week, sep 2013)– Salvatore La Torre, U. Salerno (1 month, may-jun 2014)– Zhaohui Luo, University of London (1 month, nov/dec 2011)– Amaldev Manuel, postdoc LIAFA (3 months, oct-dec 2012)– Alexei Miasnikov, Stevens Institute of Technology, Hoboken, jan 2011– Sven Schewe, U. Liverpool (1 month, sep 2012, jan 2013)– Srivathsan, CMI Chennai (2 weeks, jun 2014)– Zhilin Wu, Academy of Sciences, China (may-jul 2012)

Research visits (international)– Castéran : Tsinghua U., Suzhou, ECNU Shanghai, China - (2009,2010,2011,2012)– Gimbert : Mons U., Belgium 2011– Gimbert : IPAL, Singapour 2013– Herbreteau : IIT Bombay, India 2011– Herbreteau : Liège, Belgium 2011– Janin : York U., UK 2012– Janin : Herriot Watt University, UK 2013– Janin : Yale University, USA 2013– Janin : Bristol University, UK 2013– Janin : Darmstadt University, Germany 2012, 2013– Leroux : Liverpool U., UK, 2013– Muscholl : Warsaw University, Poland 2012– Puppis : Oxford U, UK, 2012– Retore : Verona, Italy 2010– Salvati : Tokyo, Japan 2009, 2010, 2011, 2012– Walukiewicz : Warsaw University, Poland 2012– Weil : IIT Delhi, India 2007-2009– Weil : Stevens Inst. of Technology, Hoboken, USA 2009, 2010– Weil : U. Fribourg, Switzerland 2009– Weil : U. Stuttgart, Germany 2011– Weil : CMI Chennai, India 2012, 2013, 2014– Zeitoun : Porto, Portugal 2013


Invited talks– ASL’14, 2014 (S. Salvati)– ATVA’13, Hanoi, Vietnam: J. Leroux (talk and tutorial)– ATVA’10, Singapore (I. Walukiewicz)– AutoMathA 2009, Conference of the AutoMathA programme, Liege, Belgium (I. Walukiewicz)– Barcelona Week-end in Group Theory, Barcelona, 2014 (P. Weil)– On the Posterity of Büchi (Logic and Automata) Swiss Society for Logic and Philosophy, Annual Meeting,Lausanne 2011 (I. Walukiewicz)

– CAI’09, Thessaloniki, Greece (B. Courcelle)– CONCUR’10, Paris (A. Muscholl)– Conference on Geometric and Asymptotic Group Theory and Applications, Hoboken, 2009 (P. Weil)– Conference on Geometric and Combinatorial Methods in Group Theory and Semigroup Theory, Lincoln,2009 (P. Weil)

– Conference on Geometric and Asymptotic Group Theory and Applications, Montréal, 2010 (P. Weil)– Conference on Automorphisms of free groups, Barcelona, 2012 (P. Weil)– Conference on Geometric and Asymptotic Group Theory and Applications, New York, 2013 (P. Weil)– Conference on Semigroups, Algebras and Operator Theory, Kochi, 2014 (P. Weil)– CSR’14, Moscow, Russia (I. Walukiewicz)– DIMAP workshop on Algorithmic Graph Theory, Warwick, 2009 (B. Courcelle)– Durham workshop on graphs and application, 2013 (B. Courcelle)– ESSLLI’09, Bordeaux (B. Courcelle)– EuroComb’09, Bordeaux (B. Courcelle)– EWM summerschool, Leiden, the Netherlands, 2011 (A. Muscholl)– Formal grammar 19th, Tübingen, 2014 (C. Retoré)– FSTTCS’10, Chennai, India (B. Courcelle)– GAMES’12 Napoli, Italy (H. Gimbert)– GAMES’12, Napoli, Italy (A. Muscholl)– Winter GAMES School 2013, Champéry, Switzerland (I. Walukiewicz, tutorial)– Winter GAMES School 2013, Champéry, Switzerland (A. Muscholl, tutorial)– GASSICS’11 (H. Gimbert)– GPMFV’10 (H. Gimbert)– GROW’11, Daejon, Korea (B. Courcelle)– GROW’13, Santorini, Greece (B. Courcelle)– Groups in Galway, Galway, 2013 (P. Weil)– Highlights’13, Paris (J. Leroux, tutorial)– Highlights of AutoMathA 2010 conference of the programme ESF AutoMathA, Vienna, Austria (I.Walukiewicz)

– Higher Order Schemes, Paris, 2010 (G. Sénizergues)– IHP trimester on Semantics of proofs and certified mathematics 2014 (S. Salvati)– 7th workshop on Lambda Calculus and Formal Grammars, Bordeaux, 2009 (G. Sénizergues)– LATA’09, Tarragona, Spain (B. Courcelle)– LATA’10, Trier, Germany (A. Muscholl)– LATA’11, Tarragona, Spain (J. Leroux)– MCFG+ 2010 (S. Salvati)– MCFG+2 2011 (S. Salvati)– MFCS’12, Bratislava, Slovakia (I. Walukiewicz)– Thirteenth NBSAN meeting, November 2012, York, UK (D. Janin)


– PAVAS’11, Cachan, France (J. Leroux, tutorial)– Reachability Problems 2011, Genova, Italy (B. Courcelle)– Reachability Problems 2012, Bordeaux (I. Walukiewicz)– Joint SAMS-AMS Conference, Special Session on Combinatorial and Computational Group Theory andApplications, Port Elizabeth, 2011 (P. Weil)

– SOFSEM’14, Nový Smokovec, High Tatras, Slovakia (D. Janin)– Sri K. Lakshaman Memorial Distinguished Lecture, Chennai Mathematical Institute, 2014 (P. Weil)– Journée «Théorie des Jeux et Informatique», Paris, 2009 (I. Walukiewicz)– TU Dresden PhD Programme QuantLA, spring school, 2013 (A. Muscholl, tutorial)– VPT@CAV’13, Saint Petersburg, Russia (J. Leroux)– WoLLIC’12, Buenos Aires, Argentina (A. Muscholl)– WoLLIC’09, Tokyo, Japan (S. Salvati)– Workshop on Automata, Logic, Formal languages, and Algebra 2013, Riga (M. Zeitoun)


Industrial contracts– Contract with Thales Avionics Toulouse “Modèles AltaRica et algorithmes pour le diagnostic”, may 2010– apr 2011.

– Collaboration with VITIROVER SAS, France within the EU project VVINNER (Vineyard Vigilant &INNovative Ecological Rover), 2012-2015

Collaborations outside of universities– Collaboration with ClearSy Safety Critical Systems Engineering within the ANR project RIMEL (ANR“Sécurité et Informatique”, 2007 - 2010)

– Collaboration with EDF R&D, Dassault Systèmes within the ANR project Vacsim (ANR INS 2011-2015)

Start-ups– Rhoban System S.A.S: since jan 2012. Ingénierie conseil en Robotique


Learned society, federation (national)– Member of scientific council of SIF (Muscholl)

Scientific popularization, dissemination of scientific culture– “Fête de la science” oct 2010, several scientific presentations for highschools (LLI team)– Forum des métiers, collège Alain Fournier, Bordeaux (Weil, 2013)– International exhibition EXPO 2012, Yeosu Korea 2012, French pavillon (Gimbert, Ly)– Introduction to Computer Science for highschools “Initiation à l’informatique”, with Institut Régional deRecherche sur l’Enseignement des Mathématiques, 2010-2014 (Rétoré)

– Organization of a short visit of LaBRI by a group of students of ENS Cachan, and coordination of scientificpresentations of members of LaBRI 2013 (Place, Zeitoun)

– Participation at “Des enseignants dans les laboratoires”, CNRS and Rectorat de Bordeaux, 2014 (Weil,Zeitoun)

– Participation at the exhibition “Mathissimes” (Gimbert, jan 2012)– Presentation of research employments (métiers de la recherche), ENSEIRB-Matmeca (Weil, 2013 and 2014)– Presentations for colleges (classes de 6ème, 4ème), 2013 “Maths à modeler” (Zeitoun)– Presentations for highschools (classes de 1ère S) and introduction to Computer Science (Zeitoun)


– Presentations at the forum “Maths en jeans”, apr 2014 (Zeitoun)– Presentation for primary schools (CP/CE1), Ecole Martinon Gradignan, 2014 (Muscholl)– RIEL: Teaching research in Computer Science for undergraduates (Dicky, Zeitoun, 2012 et 2013)– Robot presentation “Ergo-robots” at the mathematics exhibition “Mathématiques, un dépaysement soudain”,Fondation Cartier, 2011 (Gimbert, Ly)

– Robocup 2014, Bresil (Gimbert, Ly)– Scientific animation for general audience at Cap Science Bordeaux about game theory (Gimbert, Oualhadjdec 2009)

– Seminar “Unithé ou café”, INRIA Bordeaux Sud-Ouest “Un peu de nuance dans une logique de brutes: laquestion du sens en linguistique informatique”, 2010 (Rétoré)

– Seminar “Parler et comprendre : processus cognitifs et modèles informatiques de la faculté langage”proposée par l’Asco et club cognitique, Bordeaux, Université Bordeaux 2 Victor Ségalen, 2010 (Rétoré)

Publications for large audience– Alain Finkel, Jérôme Leroux: Neue, einfache Algorithmen für Petrinetze. Informatik Spektrum 37(3):229-236 (2014)

– Edition of write-ups of “Leçons de Mathématiques d’Aujourd’hui” published by Cassini (Sénizergues)

F.3.4 Master, predoc and postdoc researchers– S. Agrawal : undergraduate internship , 2009 (Zeitoun, Leroux, Vincent)– R. Bonnin, master internship 2012 (Gimbert)– P. Brunet, master internship ENS Cachan, 2009 (Clément, Retoré)– R. Cheval, master internship ENS Cachan 2012 (Gimbert)– Aakash Deshpande, internship IIT Bombay, 2014 (Herbreteau, Walukiewicz)– Etienne Dubourg, master internship 2012 (Sénizergues)– R. Duvignau, master internship 2012 (Muscholl, Gauwin)– R. Duvignau, master internship M1, 2011 (Gimbert, Muscholl)– Michael Färber, master internship & master thesis Innsbruck, 2013 (Sénizergues, Cezary Kaliszyk)– Julien Ferté, master internship, MPRI Paris 7, 2009 (Sénizergues)– T. Godin, master internship 2014 (Gimbert, Muscholl)– Vipul Harsh, internship IIT Bombay, 2013 (Leroux, Sutre)– E. Kelmendi, master internship 2013 (Gimbert)– E. Kien, master internship ENS Cachan, 2010 (Retoré, Salvati)– J. Kirman, master internship 2010 (Clément, Salvati)– O. Lacroix, master internship 2011 (Retoré)– Kevin Laverny, master internship 2013 (Herbreteau, Walukiewicz)– J. Ledent, internship undergraduate ENS Lyon, 2013 (Muscholl, Salvati)– Umang Mathur, internship IIT Bombay, 2013 (Herbreteau, Walukiewicz)– Y. Oualhadj, master internship 2010 (Gimbert)– J. Pautrizel, master internship 2013 (Muscholl, Gauwin)– C. Pennarun, master internship M1, 2013 (Muscholl, Salvati)– V. Pennelle, master internship 2011 (Leroux, Sutre)– Prajwal A N, internship IIT Bombay, 2012 (Herbreteau, Walukiewicz)– Cédric Ramassamy, master internship 2009 (Rollet)– T. Rocher, master internship 2014 (Muscholl, Salvati)– Noemie Sandillon-Rezer, master internship 2011 (Sénizergues, Moot)– Siddharth K., internship CMI Chennai, 2012 (Muscholl, Gimbert)


– Aditya Tiwari, internship IIT Bombay, 2011 (Herbreteau, Walukiewicz)– Sukriti Bhattacharya, postdoc (2013, Fleury), 12 months– Laurent Braud, postdoc (2011-2012, Salvati, Sénizergues), 12 months– Lorenzo Clemente, postdoc (2011-2013, Herbreteau, Sutre, Walukiewicz), 24 months– Julien Ferté, ATER 2012, 6 months– Omer Nguena-Timo, postdoc (2009-2011, 2012-2013, Rollet), 24 months– Fabio Pasquali, postdoc (2014, Retoré), 12 months– Manjunatha Praveen, postdoc (2013, Leroux, Sutre), 12 months– Patrick Totzke, postdoc (2014, Leroux, Sutre), 8 months– Zhilin Wu, postdoc (2009, Muscholl), 12 months

F.4. MABIOVIS 325

F.4 Models and Algorithms for Bio-informatics and InformationVisualisation



[RI1] J. Allali, C. Chauve, P. Ferraro, and A.-L. Gaillard, Efficient chaining of seeds in orderedtrees, Journal of Discrete Algorithms, (2012).


[RI3] J. Allali, C. Saule, C. Chauve, Y. D’Aubenton-Carafa, A. Denise, C. Drevet,P. Ferraro, D. Gautheret, C. Herrbach, F. Leclerc, A. De Monte, A. Ouangraoua,M.-F. Sagot, M. Termier, C. Thermes, and H. Touzet, Brasero: A resource for benchmarkingrna secondary structure comparison algorithms, Advances in Bioinformatics, 2012 (2012), p. 5 pages.

[RI4] P. Almeida, C. Gonçalves, S. Teixeira, D. Libkind, M. Bontrager, I. Masneuf-Pomarède,W. Albertin, P. Durrens, D. J. Sherman, P. Marullo, C. Todd Hittinger, P. Gonçalves,and J. P. Sampaio, A gondwanan imprint on global diversity and domestication of wine and cideryeast saccharomyces uvarum., Nature Communications, 5 (2014), p. 4044.

[RI5] D. Archambault, T. Munzner, and D. Auber, Tugging graphs faster: Efficiently modifying path-preserving hierarchies for browsing paths, IEEE Transactions on Visualization and Computer Graphics,(2010).

[RI6] D. Archambault, H. Purchase, and B. Pinaud, Animation, small multiples, and the effectof mental map preservation in dynamic graphs, IEEE Transactions on Visualization and ComputerGraphics, 17 (2011), pp. 539–552.

[RI7] R. Assar, A. V. Leisewitz, A. Garcia, N. C. Inestrosa, M. A. Montecino, and D. J.Sherman, Reusing and composing models of cell fate regulation of human bone precursor cells., BioSys-tems, 108 (2012), pp. 63–72.

[RI8] R. Assar, M. A. Montecino, A. Maass, and D. J. Sherman, Modeling acclimatization by hybridsystems: Condition changes alter biological system behavior models., BioSystems, (2014).

[RI9] R. Assar and D. J. Sherman, Implementing biological hybrid systems: Allowing composition andavoiding stiffness, Applied Mathematics and Computation, (2013).

[RI10] D. Auber, C. Huet, A. Lambert, B. Renoust, A. Sallaberry, and A. Saulnier, Gospermap:Using a gosper curve for laying out hierarchical data, IEEE Transactions on Visualization and ComputerGraphics, 19 (2013), pp. 1820 – 1832.

[RI11] G. Blin, P. Bonizzoni, R. Dondi, R. Rizzi, and F. Sikora, Complexity insights of the minimumduplication problem, Journal of Theoretical Computer Science (TCS), ? (2014), p. 29 pp.

[RI12] G. Blin, P. Bonizzoni, R. Dondi, and F. Sikora, On the parameterized complexity of the repeti-tion free longest common subsequence problem, Information Processing Letters, 112 (2012), pp. 272–276.

[RI13] G. Blin, M. Crochemore, S. Hamel, and S. Vialette, Median of an odd number of permuta-tions, Pure Mathematics and Applications, 21 (2011), pp. 161 – 175.

[RI14] G. Blin, A. Denise, S. Dulucq, C. Herrbach, and H. Touzet, Alignments of rna structures.,IEEE/ACM Transactions on Computational Biology and Bioinformatics, 7 (2010), pp. 309–322.


[RI15] G. Blin, D. C. Faye, and J. Stoye, Finding nested common intervals efficiently, Journal ofComputational Biology, 17 (2010), pp. 1183–1194.

[RI16] G. Blin, D. Nury, S. Stefanovic, T. Neri, O. Guillevic, B. Brinon, V. Bellamy,C. Rücker-Martin, P. Barbry, A. Bel, L. Bonnevie, P. Bruneval, C. Cowan, J. Pouly,S. Mitalipov, E. Gouadon, P. Binder, A. Hagège, M. Desnos, P. Menasché, J.-F. Re-naud, and M. Pucéat, A purified population of multipotent cardiovascular progenitors derived fromprimate pluripotent stem cells engrafts in postmyocardial infarcted nonhuman primates., J Clin Invest,120 (2010), pp. 1125–39.

[RI17] G. Blin, R. Rizzi, F. Sikora, and S. Vialette, Minimum mosaic inference of a set of recombi-nants, International Journal of Foundations of Computer Science, 24 (2013), pp. 51–66.

[RI18] G. Blin, R. Rizzi, and S. Vialette, A faster algorithm for finding minimum tucker submatrices,Theory of Computing Systems, 51 (2012), pp. 270–281.

[RI19] G. Blin, F. Sikora, and S. Vialette, Querying graphs in protein-protein interactions networksusing feedback vertex set, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 7(2010), pp. 628–635.

[RI20] E. Bon, A. Delaherche, E. Bilhere, A. De Daruvar, A. Lonvaud-Funel, and C. Le Mar-rec, Oenococcus oeni genome plasticity is associated with fitness, Applied and Environmental Microbi-ology, 75 (2009), pp. 2079–90.

[RI21] F. Boudon, C. Preuksakarn, P. Ferraro, J. Diener, P. Nacry, E. Nikinmaa, andC. Godin, Quantitative assessment of automatic reconstructions of branching systems obtained fromlaser scanning., Annals of Botany, (2014).

[RI22] J. Bourbeillon, S. Orchard, I. Benhar, C. Borrebaeck, A. De Daruvar, S. Dübel,R. Frank, F. Gibson, D. Gloriam, N. Haslam, T. Hiltker, I. Humphrey-Smith, M. Hust,D. Juncker, M. Koegl, Z. Konthur, B. Korn, S. Krobitsch, S. Muyldermans, P.-A. Ny-gren, S. Palcy, B. Polic, H. Rodriguez, A. Sawyer, M. Schlapshy, M. Snyder, O. Sto-evesandt, M. J. Taussig, M. Templin, M. Uhlen, S. Van Der Maarel, C. Wingren, H. Her-mjakob, and D. J. Sherman, Minimum information about a protein affinity reagent (miapar)., NatureBiotechnology, 28 (2010), pp. 650–3.

[RI23] A. B. Canelas, N. Harrison, A. Fazio, J. Zhang, J.-P. Pitkänen, J. Van Den Brink,B. M. Bakker, L. Bogner, J. Bouwman, J. I. Castrillo, A. Cankorur, P. Chumnan-puen, P. Daran-Lapujade, D. Dikicioglu, K. Van Eunen, J. C. Ewald, J. J. Heijnen,B. Kirdar, I. Mattila, F. I. C. Mensonides, A. Niebel, M. Penttilä, J. T. Pronk,M. Reuss, L. Salusjärvi, U. Sauer, D. J. Sherman, M. Siemann-Herzberg, H. Westerhoff,J. De Winde, D. Petranovic, S. G. Oliver, C. T. Workman, N. Zamboni, and J. Nielsen, In-tegrated multilaboratory systems biology reveals differences in protein metabolism between two referenceyeast strains., Nature Communications, 1 (2010), p. 145.

[RI24] M. Courtot, N. Juty, C. Knüpfer, D. Waltemath, A. Zhukova, A. Dräger, M. Dumon-tier, A. Finney, M. Golebiewski, J. Hastings, S. Hoops, S. Keating, D. B. Kell, S. Kerrien,J. Lawson, A. Lister, J. Lu, R. Machne, P. Mendes, M. Pocock, N. Rodriguez, A. Vil-leger, D. J. Wilkinson, S. Wimalaratne, C. Laibe, M. Hucka, and N. Le Novère, Controlledvocabularies and semantics in systems biology., Molecular Systems Biology, 7 (2011), p. 543.

[RI25] L. Despons, P. Baret, L. Frangeul, V. Louis, P. Durrens, and J.-L. Souciet, Genome-wide computational prediction of tandem gene arrays: application in yeasts., BMC Genomics, 11 (2010),p. 56.

[RI26] E. Dordet-Frisoni, E. Baranowski, A. Barré, A. Blanchard, M. Breton, C. Couture,V. Dupuy, P. Gaurivaud, D. Jacob, C. Lemaitre, L. Manso-Silván, M. Nikolski, L.-X.Nouvel, F. Poumarat, P. Sirand-Pugnet, P. Thébault, S. Theil, F. Thiaucourt, C. Citti,

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and F. Tardy, Draft genome sequences of mycoplasma auris and mycoplasma yeatsii, two species ofthe ear canal of caprinae, Genome Announcements, 1 (2013).

[RI27] P. Durrens, T. Martin, and D. J. Sherman, The génolevures database, Comptes Rendus del’Académie des Sciences, Série Biologies, 334 (2011), pp. 585–589.

[RI28] C. Ducruet, C. Rozenblat, and F. Zaidi, Ports in multi-level maritime networks: Evidencefrom the atlantic (1996-2006), Journal of Transport Geography, 18 (2010), pp. 508–518.

[RI29] C. Ducruet and F. Zaidi, Maritime constellations: A complex network approach to shipping andports, Maritime Policy and Management, 39 (2012), pp. 151–168.

[RI30] V. Dupuy, L. Manso-Silván, V. Barbe, P. Thebault, E. Dordet-Frisoni, C. Citti,F. Poumarat, A. Blanchard, M. Breton, P. Sirand-Pugnet, and F. Thiaucourt, Evolu-tionary history of contagious bovine pleuropneumonia using next generation sequencing of mycoplasmamycoides subsp. mycoides "small colony"., PLoS ONE, 7 (2012).

[RI31] V. Dupuy, P. Sirand-Pugnet, E. Baranowski, A. Barré, M. Breton, C. Couture,E. Dordet-Frisoni, P. Gaurivaud, D. Jacob, C. Lemaitre, L. Manso-Silván, M. Nikolski,L.-X. Nouvel, F. Poumarat, F. Tardy, P. Thébault, S. Theil, C. Citti, A. Blanchard,and F. Thiaucourt, Complete genome sequence of mycoplasma putrefaciens strain 9231, one of theagents of contagious agalactia in goats, Genome Announcements, 1 (2013).

[RI32] J. Durand, C. Bodénès, E. Chancerel, J.-M. Frigerio, G. Vendramin, F. Sebastiani,A. Buonamici, O. Gailing, H.-P. Koelewijn, F. Villani, C. Mattioni, M. Cherubini, P. G.Goicoechea, A. Herrán, Z. Ikaran, C. Cabané, S. Ueno, F. Alberto, P.-Y. Dumoulin,E. Guichoux, A. De Daruvar, A. Kremer, and C. Plomion, A fast and cost-effective approachto develop and map est-ssr markers: oak as a case study., BMC Genomics, 11 (2010), p. 570.

[RI33] W. Dyrka, M. M. Bartuzel, and M. Kotulska, Optimization of 3d poisson-nernst-planckmodel for fast evaluation of diverse protein channels, Proteins: Structure, Function, and Bioinformatics,(2013).

[RI34] W. Dyrka, J.-C. Nebel, and M. Kotulska, Probabilistic grammatical model for helix-helix con-tact site classification, Algorithms for Molecular Biology, 8 (2013), p. 31.

[RI35] F. El Gharniti, M. Dols-Lafargue, E. Bon, O. Claisse, C. Miot-Sertier, A. Lonvaud-Funel, and C. Le Marrec, Is30 elements are mediators of genetic diversity in oenococcus oeni.,International Journal of Food Microbiology, 158 (2012), pp. 14–22.

[RI36] A. Enache-Angoulvant, J. Guitard, F. Grenouillet, T. Martin, P. Durrens, C. Fair-head, and C. Hennequin, Rapid discrimination between candida glabrata, candida nivariensis, andcandida bracarensis by use of a singleplex pcr, Journal of Clinical Microbiology, 49 (2011), pp. 3375–3379.

[RI37] D. C. Faye, O. Curé, and G. Blin, A survey of rdf storage approaches, Revue Africaine de laRecherche en Informatique et Mathématiques Appliquées, 15 (2012).

[RI38] H. Ferry-Dumazet, L. Gil, C. Deborde, A. Moing, S. Bernillon, D. Rolin, M. Nikolski,A. De Daruvar, and D. Jacob, Mery-b: a web knowledgebase for the storage, visualization, analysisand annotation of plant nmr metabolomic profiles., BMC Plant Biology, 11 (2011), p. 104.

[RI39] T. Gabaldón, T. Martin, M. Marcet-Houben, P. Durrens, M. Bolotin-Fukuhara,O. Lespinet, S. Arnaise, S. Boisnard, G. Aguileta, R. Atanasova, C. Bouchier,A. Couloux, S. Creno, J. Almeida Cruz, H. Devillers, A. Enache-Angoulvant, J. Gui-tard, L. Jaouen, L. Ma, C. Marck, C. Neuvéglise, E. Pelletier, A. Pinard, J. Poulain,J. Recoquillay, E. Westhof, P. Wincker, B. Dujon, C. Hennequin, and C. Fairhead, Com-parative genomics of emerging pathogens in the candida glabrata clade., BMC Genomics, 14 (2013),p. 623.




[RI42] V. Garcia, R. Stevens, L. Gil, L. Gilbert, N. Gest, J. Petit, M. Faurobert, M. Mau-court, C. Deborde, A. Moing, J.-L. Poessel, D. Jacob, J.-P. Bouchet, J.-L. Giraudel,B. Gouble, D. Page, M. Alhagdow, C. Massot, H. Gautier, M. Lemaire-Chamley,A. De Daruvar, D. Rolin, B. Usadel, M. Lahaye, M. Causse, P. Baldet, and C. Rothan,An integrative genomics approach for deciphering the complex interactions between ascorbate metabolismand fruit growth and composition in tomato., Comptes Rendus Biologies, 332 (2009), pp. 1007–21.


[RI44] A. Ghozlane, F. Bringaud, H. Soueidan, I. Dutour, F. Jourdan, and P. Thebault, Fluxanalysis of the trypanosoma brucei glycolysis based on a multi-objective criteria bioinformatic approach,advances in bioinfromatics, 2012, in press. international conference with published acts, Advances inBioinformatics, 2012 (2012), pp. 16 pages, Article ID 159423.

[RI45] F. Gilbert, P. Simonetto, F. Zaidi, F. Jourdan, and R. Bourqui, Communities and hierar-chical structures in dynamic social networks: analysis and visualization, Social Network Analysis andMining, 1 (2011), pp. 85–95.

[RI46] D. E. Gloriam, S. Orchard, D. Bertinetti, E. Björling, E. Bongcam-Rudloff, C. A. K.Borrebaeck, J. Bourbeillon, A. R. M. Bradbury, A. De Daruvar, S. Dübel, R. Frank,T. J. Gibson, L. Gold, N. Haslam, F. W. Herberg, T. Hiltke, J. D. Hoheisel, S. Ker-rien, M. Koegl, Z. Konthur, B. Korn, U. Landegren, L. Montecchi-Palazzi, S. Palcy,H. Rodriguez, S. Schweinsberg, V. Sievert, O. Stoevesandt, M. J. Taussig, M. Ueffing,M. Uhlén, S. Van Der Maarel, C. Wingren, P. Woollard, D. J. Sherman, and H. Her-mjakob, A community standard format for the representation of protein affinity reagents., Mol CellProteomics, 9 (2010), pp. 1–10.

[RI47] C. Godin and P. Ferraro, Quantifying the degree of self-nestedness of trees. application to thestructural analysis of plants, IEEE TCBB, 7 (2010), pp. 688–703.

[RI48] C. Godin and P. Ferraro, Quantifying the degree of self-nestedness of trees: application to thestructural analysis of plants, IEEE/ACM Transactions on Computational Biology and Bioinformatics(TCBB), 7 (2010), pp. 688–703.

[RI49] C. Herrbach, A. Denise, and S. Dulucq, Average complexity of the jiang-wang-zhang pairwisetree alignment algorithm and of a rna secondary structure alignment algorithm, Theoretical ComputerScience, 411 (2010), pp. 2423–2432.

[RI50] G. Jean and M. Nikolski, Sydig: uncovering synteny in distant genomes, Int. J. of BioinformaticsResearch and Applications, (2011), pp. 43–62.

[RI51] G. Jean, D. J. Sherman, and M. Nikolski, Mining the semantics of genome super-blocks to inferancestral architectures, Journal of Computational Biology, 16 (2009), pp. 1267–1284.

[RI52] G. Kunze, C. Gaillardin, M. Czernicka, P. Durrens, T. Martin, E. Böer, T. Gabaldón,J. Cruz, E. Talla, C. Marck, A. Goffeau, V. Barbe, P. Baret, K. Baronian, S. Beier,C. Bleykasten, R. Bode, S. Casaregola, L. Despons, C. Fairhead, M. Giersberg, P. Gier-ski, U. Hähnel, A. Hartmann, D. Jankowska, C. Jubin, P. Jung, I. Lafontaine, V. Leh-Louis, M. Lemaire, M. Marcet-Houben, M. Mascher, G. Morel, G.-F. Richard, J. Riechen,C. Sacerdot, A. Sarkar, G. Savel, J. Schacherer, D. Sherman, N. Stein, M.-L. Straub,A. Thierry, A. Trautwein-Schult, B. Vacherie, E. Westhof, S. Worch, B. Dujon, J.-L. Souciet, P. Wincker, U. Scholz, and C. Neuvéglise, The complete genome of blastobotrys

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(arxula) adeninivorans ls3 - a yeast of biotechnological interest., Biotechnology for Biofuels, 7 (2014),p. 66.

[RI53] A. Lambert, R. Bourqui, and D. Auber, Winding roads: Routing edges into bundles, ComputerGraphics Forum, 29 (2010), pp. 853–862.

[RI54] A. Lambert, J. Dubois, and R. Bourqui, Pathway preserving representation of metabolic net-works, Computer Graphics Forum, 30 (2011), pp. 1021 – 1030.

[RI55] C. Lemaitre, A. Barré, C. Citti, F. Tardy, F. Thiaucourt, P. Sirand-Pugnet, andP. Thébault, A novel substitution matrix fitted to the compositional bias in mollicutes improves theprediction of homologous relationships, BMC Bioinformatics, 12 (2011), p. 457.

[RI56] N. Loira, T. Dulermo, J.-M. Nicaud, and D. Sherman, A genome-scale metabolic model ofthe lipid-accumulating yeast yarrowia lipolytica, BMC Systems Biology, 6 (2012), p. 35.

[RI57] V. L. Louis, L. Despons, A. Friedrich, T. Martin, P. Durrens, S. Casarégola, C. Neu-véglise, C. Fairhead, C. Marck, J. A. Cruz, M.-L. Straub, V. Kugler, C. Sacerdot,Z. Uzunov, A. Thierry, S. Weiss, C. Bleykasten, J. De Montigny, N. Jacques, P. Jung,M. Lemaire, S. Mallet, G. Morel, G.-F. Richard, A. Sarkar, G. Savel, J. Schacherer, M.-L. Seret, E. Talla, G. Samson, C. Jubin, J. Poulain, B. Vacherie, V. Barbe, E. Pelletier,D. J. Sherman, E. Westhof, J. Weissenbach, P. V. Baret, P. Wincker, C. Gaillardin,B. Dujon, and J.-L. Souciet, Pichia sorbitophila, an interspecies yeast hybrid, reveals early steps ofgenome resolution after polyploidization., G3 (Bethesda), 2 (2012), pp. 299–311.

[RI58] A. Mancheron, R. Uricaru, and E. Rivals, An alternative approach to multiple genome com-parison, Nucleic Acids Research, 39 (2011).

[RI59] L. Manso-Silván, F. Tardy, E. Baranowski, A. Barré, A. Blanchard, M. Breton,C. Couture, C. Citti, E. Dordet-Frisoni, V. Dupuy, P. Gaurivaud, D. Jacob, C. Lemaitre,M. Nikolski, L.-X. Nouvel, F. Poumarat, P. Thébault, S. Theil, F. Thiaucourt, andP. Sirand-Pugnet, Draft genome sequences of mycoplasma alkalescens, mycoplasma arginini, andmycoplasma bovigenitalium, three species with equivocal pathogenic status for cattle, Genome Announce-ments, 1 (2013).

[RI60] G. Melançon and C. Reutenauer, On a class of lyndon words extending christoffel words andrelated to a multidimensional continued fraction algorithm, Journal of Integer Sequences, 16 (2014),p. 13.19.17.

[RI61] M. Nikolski, D. Alonso-Alemany, A. Barré, S. Beretta, P. Bonizzoni, and G. Va-liente, Further steps in tango: improved taxonomic assignment in metagenomics, Bioinformatics,(2013), p. 10.1093/bioinformatics/btt256.

[RI62] C. Ordonez, S. Maabout, D. S. Matusevich, and W. Cabrera, Extending er models tocapture database transformations to build data sets for data mining, Data and Knowledge Engineering,89 (2013), pp. 38–54.

[RI63] A. Ouangraoua and P. Ferraro, A constrained edit distance algorithm between semi-orderedtrees, Theoretical Computer Science, 410 (2009), pp. 837–846.

[RI64] A. Ouangraoua and P. Ferraro, A new constrained edit distance between quotiented orderedtrees, Journal of Discrete Algorithms, 7 (2009), pp. 78–89.

[RI65] C. Payen, G. Fischer, C. Marck, C. Proux, D. J. Sherman, J.-Y. Coppée, M. Johnston,B. Dujon, and C. Neuvéglise, Unusual composition of a yeast chromosome arm is associated withits delayed replication., Genome Researchearch, (2009).


[RI66] S. Pereyre, P. Sirand-Pugnet, L. Beven, A. Charron, H. Renaudin, A. Barré, P. Ave-naud, D. Jacob, A. Couloux, V. Barbe, A. De Daruvar, A. Blanchard, and C. Bébéar,Life on arginine for mycoplasma hominis: clues from its minimal genome and comparison with otherhuman urogenital mycoplasmas., PLoS Genetics, 5 (2009).

[RI67] B. Pinaud, G. Melançon, and J. Dubois, Porgy: A visual graph rewriting environment forcomplex systems, Computer Graphics Forum, 31 (2012), pp. 1265–1274.

[RI68] F. Queyroi, Optimizing a hierarchical community structure of a complex network, Advances inKnowledge Discovery and Management, 4 (2014), pp. 3–14.

[RI69] F. Queyroi, M. Delest, J.-M. Fédou, and G. Melançon, Assessing the quality of multilevelgraph clustering, Data Mining and Knowledge Discovery, 28 (2014), pp. 1107–1128.

[RI70] E. Rivals, A. Mancheron, and R. Uricaru, Reliable bacterial genome comparison tools, ERCIMNews, 82 (2010), pp. 017–018.

[RI71] A. Romano, H. Trip, H. Campbell-Sills, O. Bouchez, D. Sherman, J. S. Lolkema, andP. M. Lucas, Genome sequence of lactobacillus saerimneri 30a (formerly lactobacillus sp. strain 30a),a reference lactic acid bacterium strain producing biogenic amines., Genome Announcements, 1 (2013).

[RI72] G. Sacomoto, J. Kielbassa, R. Chikhi, R. Uricaru, P. Antoniou, M.-F. Sagot, P. Pe-terlongo, and V. Lacroix, Kissplice: de-novo calling alternative splicing events from rna-seq data,BMC Bioinformatics, 13 (2012).

[RI73] A. Sallaberry, F. Zaidi, and G. Melançon, Model for generating artificial social networkshaving community structures with small world and scale free properties, Social Network Analysis andMining, 3 (2013).

[RI74] S.-A. Sansone, P. Rocca-Serra, D. Field, E. Maguire, C. Taylor, O. Hofmann, H. Fang,S. Neumann, W. Tong, L. Amaral-Zettler, K. Begley, T. Booth, L. Bougueleret,G. Burns, B. Chapman, T. Clark, L.-A. Coleman, J. Copeland, S. Das, A. De Daruvar,P. De Matos, I. Dix, S. Edmunds, C. T. Evelo, M. J. Forster, P. Gaudet, J. Gilbert,C. Goble, J. L. Griffin, D. Jacob, J. Kleinjans, L. Harland, K. Haug, H. Hermjakob,S. J. Ho Sui, A. Laederach, S. Liang, S. Marshall, A. Mcgrath, E. Merrill, D. Reilly,M. Roux, C. E. Shamu, C. A. Shang, C. Steinbeck, A. Trefethen, B. Williams-Jones,K. Wolstencroft, I. Xenarios, and W. Hide, Toward interoperable bioscience data., Nature Ge-netics, 44 (2012), pp. 121–6.

[RI75] A. Sarkar, M. Nikolski, and P. Durrens, The family based variability in protein family expan-sion., International Journal of Bioinformatics Research and Applications, 9 (2013), pp. 121–33.

[RI76] A. Sarkar, H. Soueidan, and M. Nikolski, Identification of conserved gene clusters in multiplegenomes based on synteny and homology, BMC Bioinformatics, 12 (2011).

[RI77] D. J. Sherman, Minimum information requirements : neither bandits in the attic nor bats in thebelfry, New Biotechnology, 25 (2009), pp. 173–4.

[RI78] D. J. Sherman, T. Martin, M. Nikolski, C. Cayla, J.-L. Souciet, and P. Durrens, Genole-vures: protein families and synteny among complete hemiascomycetous yeast proteomes and genomes.,Nucleic Acids Research, (2009).

[RI79] P. Simonetto, D. Archambault, D. Auber, and R. Bourqui, Impred: An improved force-directed algorithm that prevents nodes from crossing edges, Computer Graphics Forum, 30 (2011).

[RI80] P. Simonetto, D. Auber, and D. Archambault, Fully automatic visualisation of overlappingsets, Computer Graphics Forum, 28 (2009), pp. 967–974.

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[RI82] H. Soueidan, F. Maurier, A. Groppi, P. Sirand-Pugnet, F. Tardy, C. Citti, V. Dupuy,and M. Nikolski, Finishing bacterial genome assemblies with mix, BMC Bioinformatics, (2013).

[RI83] F. Tardy, E. Baranowski, X. Nouvel, V. Mick, L. Manso-Silvan, F. Thiaucourt,P. Thébault, M. Breton, P. Sirand-Pugnet, A. Blanchard, A. Garnier, P. Gibert,Y. Game, F. Poumarat, and C. Citti, Emergence of atypical mycoplasma agalactiae strains har-boring a new prophage and associated with an alpine wild ungulate mortality episode, Applied andEnvironmental Microbiology, 78 (2012), pp. 4659–4668.

[RI84] S. Ueno, G. Le Provost, V. Léger, C. Klopp, C. Noirot, J.-M. Frigerio, F. Salin,J. Salse, M. Abrouk, F. Murat, O. Brendel, J. Derory, P. Abadie, P. Léger, C. Cabane,A. Barré, A. De Daruvar, A. Couloux, P. Wincker, M.-P. Reviron, A. Kremer, andC. Plomion, Bioinformatic analysis of ests collected by sanger and pyrosequencing methods for akeystone forest tree species: oak., BMC Genomics, 11 (2010), p. 650.

[RI85] R. Uricaru, A. Mancheron, and E. Rivals, Novel definition and algorithm for chaining frag-ments with proportional overlaps, Journal of Computational Biology, 18 (2011), pp. 1141–1154.

[RI86] D. Waltemath, R. Adams, D. A. Beard, F. T. Bergmann, U. S. Bhalla, R. Britten,V. Chelliah, M. T. Cooling, J. Cooper, E. J. Crampin, A. Garny, S. Hoops, M. Hucka,P. Hunter, E. Klipp, C. Laibe, A. K. Miller, I. Moraru, D. Nickerson, P. Nielsen,M. Nikolski, S. Sahle, H. M. Sauro, H. Schmidt, J. L. Snoep, D. Tolle, O. Wolken-hauer, and N. Le Novère, Minimum information about a simulation experiment (miase), PLoSComputational Biology, 7 (2011).

[RI87] F. Zaidi, P. Simonetto, R. Bourqui, F. Gilbert, and F. Jourdan, Communities and hierar-chical structures in dynamic social networks: analysis and visualization, Social Network Analysis andMining, 1 (2011), pp. 83–95.

[RI88] A. Zhukova, R. Adams, C. Laibe, and N. Le Novère, Libkisao: a java library for queryingkisao, BMC Research Notes, 5 (2012), p. 520.

[RI89] A. Zhukova and D. J. Sherman, Knowledge-based generalization of metabolic models, Journal ofComputational Biology, (2014).

[RI90] A. Zhukova and D. J. Sherman, Knowledge-based generalization of metabolic networks: a practicalstudy, Journal of Bioinformatics and Computational Biology, 12(2) (2014).

[RI91] A. Zimmer, C. Durand, N. Loira, P. Durrens, D. J. Sherman, and P. Marullo, Qtldissection of lag phase in wine fermentation reveals a new translocation responsible for saccharomycescerevisiae adaptation to sulfite., PLoS ONE, 9 (2014).


[RN1] R. Bourqui, P. Simonetto, and F. Jourdan, Un algorithme stable de décompositionpour l’analyse des réseaux sociaux dynamiques, REVUE DES NOUVELLES TECHNOLOGIES DEL’INFORMATION, (2009), pp. 337–348.




[CHI2] A. Ben Zakour, S. Maabout, M. Mosbah, and M. Sistiaga, Relaxing time granularity formining frequent sequences, in Advances in Knowledge Discovery and Management, F. G. B. P. . G. V.. D. A. Zighed, ed., Springer International Publishing, 2014, pp. 53–76.

[CHI3] G. Blin, M. Crochemore, and S. Vialette, Algorithmic aspects of arc-annotated sequences, inAlgorithms in Computational Molecular Biology: Techniques, Approaches and Applications, Z. A. Y.Elloumi Mourad, ed., Wiley, 2011, pp. 113–126.

[CHI4] R. Bourqui, P. Simonetto, and F. Jourdan, A stable decomposition algorithm for dynamicalsocial network analysis, in Advances in Knowledge Discovery and Management, D. A. Z. Fabrice Guillet,Gilbert Ritschard and H. Briand, eds., Springer, 2010, pp. 167–178.


[CHI6] A. Lambert, R. Bourqui, and D. Auber, Graph visualization for geography, in Methods forMultilevel Analysis and Visualisation of Geographical Networks, Springer, 2013, pp. 81–102.

[CHI7] G. Melançon and C. Rozenblat, Structural analysis of networks, in Methods for MultilevelAnalysis and Visualisation of Geographical Networks, Springer, 2013, pp. 69–80.

[CHI8] C. Rozenblat and G. Melançon, A small world perspective on urban systems, in Handbook ofTheoretical and Quantitative Geography, C. M. François Bavaud, ed., Université de Lausanne, Facultédes Géosciences et de l’Environnement, 2009, pp. 431–457.

[CHI9] C. Rozenblat and G. Melançon, A small world perspective on urban systems, in Methods forMultilevel Analysis and Visualisation of Geographical Networks, Springer, 2013, pp. 19–32.

[CHI10] C. Rozenblat, G. Melançon, R. Bourqui, and D. Auber, Comparing multilevel clusteringmethods on weighted graphs: The case of worldwide air passenger traffic 2000-2004, in Methods forMultilevel Analysis and Visualisation of Geographical Networks, Springer, 2013, pp. 141–154.


[CHN1] P. Durrens, Phylogénie moléculaire des champignons, in Mycologie médicale, C. Ripert, ed.,Lavoisier, 2013, pp. 49–54.

[CHN2] G. Melançon and C. Douy, La visualisation d’information au service de la veille concurrentielle,de la fouille d’information et de la supervision de systèmes complexes, in La sécurité globale : Réalité,enjeux et perspectives, W. Akmouche, ed., SEE (Société des électriciens et des électroniciens), CNRSEditions, 2009, pp. 263–271.


[DI1] A. Cuzzocrea and S. Maabout, Proceedings of the third MEDI international conference, Springer,2013.

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[DN1] Y. Lechevallier, G. Melançon, and B. Pinaud, Extraction et Gestion des Connaissances,EGC2012, vol. RNTI-E-23, Hermann, 2012.

[DN2] S. Maabout, Numéro spécial de la revue RNTI (Revue des Nouvelles Technologies de l’Information),Hermann, 2012.


[II1] G. Blin, Mistreat: Motion simulator in proton-therapy treatment, in The Workshop on Bioinformaticsand Stringology 2014 (BioS 2014), 2014.

[II2] P. Durrens, The génolevures database, in 10th anniversary of Génolevures, P. B. Dujon, ed., 2010.

[II3] M. Fernandez, H. Kirchner, I. Mackie, and B. Pinaud, Visual modelling of complex systems:Towards an abstract machine for porgy, in Lecture Notes in Computer Science, vol. 8493, Springer, 2014.

[II4] P. Lucas, E. Bon, V. Renouf, M. Dols-Lafargue, C. Le Marrec, and A. Lonvaud-Funel,Oenococcus oeni genomic adaptation to the wine environment, in SGM-Society for General MicrobiologyAutumn 2009 Meeting, 2009.

[II5] D. J. Sherman, Methods for understanding function and history in small eukaryote genomes, inColloquium LIX, M. Régnier, ed., inria, 2010.

[II6] D. J. Sherman, Taming the complexity of ’n-ary’ relations in comparative genomics, in 9th Interna-tional Conference on Genome Biology and Bioinformatics, M. Borodovsky, ed., 2013.

[II7] D. J. Sherman and N. Golenetskaya, Addressing scaling-out challenges for comparative genomics,in Moscow Conference on Computational Molecular Biology, 2011.

[II8] D. J. Sherman, N. Loira, and N. Golenetskaya, High-performance comparative annotation, inBioinformatics after next-generation sequencing, V. Makeev and G. Kucherov, eds., inria, 2010.

[II9] P. Thebault, A multi-objective heuristic integrating biological data for flux analysis in metabolicnetworks, in Open Source Software for Systems, Pathways, Interactions and Networks (SPIN-OSS) retreatbeing held at the Wellcome Trust Genome Campus, EBI, 2012.


[IN1] R. Assar, H. Soueidan, and D. J. Sherman, Hierarchical study of guyton circulatory model, inLes Journées Ouvertes en Biologie, Informatique et Mathématiques JOBIM 2009, I. R. Eric Rivals, ed.,Eric Rivals, Irena Rusu, 2009.

[IN2] D. J. Sherman, Two examples of evolutionary algorithms in reconstructing genome evolution, inWorkshop on Evolutionary Algorithms - Challenges in Theory and Practice, inria, 2010.


[CI1] J. Abello and F. Queyroi, Fixed points of graph peeling, in 2013 IEEE/ACM International Con-ference on Advances in Social Networks Analysis and Mining, 2013.


[CI2] A. Adamaszek, G. Blin, and A. Popa, Approximation and hardness results for the maximum edgesin transitive closure problem, in 25th International Workshop on Combinatorial Algorithms, 2014, p. 10pp.

[CI3] J. Allali, P. Antoniou, P. Ferraro, C. Iliopoulos, and S. Michalakopoulos, Overlayproblems for music and combinatorics, in Proceedings of the 15th International Conference on AuditoryDisplay, M. Aramaki, R. Kronland-Martinet, S. Ystad, and K. Jensen, eds., 2009, pp. 138–143.

[CI4] J. Allali, P. Antoniou, P. Ferraro, C. Iliopoulos, and S. Michalakopoulos, Combinatorialdetection of arrhytmia, in BIOSIGNALS 2010, 2010, pp. 180–187.

[CI5] J. Allali, C. Chauve, P. Ferraro, and A.-L. Gaillard, Efficient chaining of seeds in orderedtrees, in Proceeedings of the 21st International Workshop on Combinatorial Algorithms, 2010.

[CI6] O. Andrei, M. Fernandez, H. Kirchner, G. Melançon, O. Namet, and B. Pinaud, Porgy:Strategy-driven interactive transformation of graphs, in 6th International Workshop on Computing withTerms and Graphs (TERMGRAPH 2011), R. Echahed, ed., vol. 48, 2011, pp. 54–68.

[CI7] P. Antoniou, J. Allali, C. Iliopoulos, and P. Ferraro, Validation and decomposition ofpartially occluded images with holes, in Proceedings of the Prague Strincology Conference, 2009, pp. 129–136.

[CI8] D. Archambault, T. Munzner, and D. Auber, Tuggraph: Path-preserving hierarchies for brows-ing proximity and paths in graphs, in IEEE Pacific Visualization Symposium, 2009, pp. 113–121.

[CI9] D. Archambault, H. Purchase, and B. Pinaud, The readability of path-preserving clusterings ofgraphs, in Eurovis 2010, 12th annual Eurographics/IEEE Symposium on Visualization, G. Melançon,T. Munzner, and D. Weiskopf, eds., vol. 29(3) of Eurographics/ IEEE-VGTC Symposium on Visualiza-tion 2010, WILEY, 2010, pp. 1173–1182.

[CI10] D. Archambault, H. Purchase, and B. Pinaud, Difference map readability for dynamic graphs,in 18th International Symposium on Graph Drawing, U. Brandes and S. Cornelsen, eds., vol. 6502 ofLNCS, Springer, 2011, pp. 50–61.

[CI11] R. Assar, M. A. Montecino, and D. J. Sherman, Stochastic modeling of complex systems andsystems biology: From stochastic transition systems to hybrid systems, in XII Latin American Congressof Probability and Mathematical Statistics, 2012.

[CI12] R. Assar, F. Vargas, and D. J. Sherman, Reconciling competing models: a case study of winefermentation kinetics, in Algebraic and Numeric Biology 2010, K. Horimoto, M. Nakatsui, and N. Popov,eds., vol. 6479 of Lecture Notes in Computer Science, Springer, 2012, pp. 68–83.

[CI13] A. Benzakour, S. Maabout, M. Mosbah, and M. Sistiaga, Time constraints extension onfrequent sequential patterns, in Proceedings of KDIR conference, SciTePress, ed., 2010, pp. 281–287.

[CI14] A. Benzakour, S. Maabout, M. Mosbah, and M. Sistiaga, Uncertainty interval temporalsequences extraction, in Proceedings of the 6th Int. Conf. on Information Systems, Technology andManagement (ICISTM), no. 285 in Com. Comp. Info. Science (CCIS), Springer, 2012, pp. 259–270.

[CI15] G. Blin, P. Bonizzoni, R. Dondi, R. Rizzi, and F. Sikora, Complexity insights of the minimumduplication problem, in 38th International Conference on Current Trends in Theory and Practice ofComputer Science (SOFSEM 2012), Springer, ed., vol. 7147 of Lecture Notes in Computer Science,2012, pp. 153–164.

[CI16] G. Blin, L. Bulteau, M. Jiang, P. J. Tejada, and S. Vialette, Hardness of longest commonsubsequence for sequences with bounded run-lengths, in 23rd Annual Symposium on Combinatorial Pat-tern Matching (CPM’12), J. Kärkkäinen and J. Stoye, eds., vol. 7354 of Lecture Notes in ComputerScience, Springer-Verlag, 2012, pp. 138–148.

F.4. MABIOVIS 335

[CI17] G. Blin, G. Fertin, H. Mohamed-Babou, I. Rusu, F. Sikora, and S. Vialette, Algorithmicaspects of heterogeneous biological networks comparison, in Proceedings of the 5th International Confer-ence on Combinatorial Optimization and Applications, vol. 6831 of Lecture Notes in Computer Science,Springer, 2011, pp. 272–286.

[CI18] G. Blin, G. Fertin, F. Sikora, and S. Vialette, The exemplar breakpoint distance for non-trivialgenomes cannot be approximated, in Proceedings of the 3rd Workshop on Algorithms and Computation,D. S. and U. R, eds., vol. 5431 of Lecture Notes in Computer Science, Springer-Verlag, 2009, pp. 357–368.

[CI19] G. Blin, S. Hamel, and S. Vialette, Comparing rna structures with biologically relevant oper-ations cannot be done without strong combinatorial restrictions, in 4th Workshop on Algorithms andComputation (WALCOM’10), R. M. S. and F. S., eds., vol. 5942 of Lecture Notes in Computer Science,Springer-Verlag, 2010, pp. 149–160.

[CI20] G. Blin, M. Jiang, and S. Vialette, The longest common subsequence problem with crossing-free arc-annotated sequences, in 19th edition of the International Symposium on String Processing andInformation Retrieval (SPIRE 2012), L. C.-B. et al., ed., vol. 7608 of LNCS, Springer, Heidelberg, 2012.

[CI21] G. Blin, P. Morel, R. Rizzi, and S. Vialette, Towards unlocking the full potential of multileafcollimators, in 40th International Conference on Current Trends in Theory and Practice of ComputerScience (SOFSEM), Lecture Notes in Computer Science, 2014, p. 13 pp.

[CI22] G. Blin, R. Rizzi, F. Sikora, and S. Vialette, Minimum mosaic inference of a set of recombi-nants, in 17th Computing: the Australasian Theory Symposium (CATS’11), P. Alex and V. Taso, eds.,vol. 119 of CRPIT, ACS, 2011, pp. 23–30.

[CI23] G. Blin, R. Rizzi, and S. Vialette, A faster algorithm for finding minimum tucker submatrices,in 6th Computability in Europe (CiE’10), vol. 6158 of Lecture Notes in Computer Science, Springer,2010, pp. 69–77.

[CI24] G. Blin, R. Rizzi, and S. Vialette, A polynomial-time algorithm for finding minimal conflictingsets, in 6th International Computer Science Symposium in Russia (CSR’11), vol. 6651 of Lecture Notesin Computer Science, 2011, pp. 373–384.

[CI25] G. Blin, F. Sikora, and S. Vialette, Querying protein-protein interaction networks, in 5thInternational Symposium on Bioinformatics Research and Applications (ISBRA’09), M. Ion, N. Giri,and Z. Yanqing, eds., vol. 5542 of LNBI, Springer-Verlag, 2009, pp. 52–62.

[CI26] G. Blin, F. Sikora, and S. Vialette, Gramofone: a cytoscape plugin for querying motifs withouttopology in protein-protein interactions networks, in 2nd International Conference on Bioinformaticsand Computational Biology (BICoB’10), H. Al-Mubaid, ed., International Society for Computers andtheir Applications (ISCA), 2010, p. 38–43.

[CI27] G. Blin and J. Stoye, Finding nested common intervals efficiently, in 7th RECOMB SatelliteWorkshop on Comparative Genomics (RECOMB-CG’09), C. F. D. and M. István, eds., vol. 5817 ofLecture Notes in Bioinformatics, Springer-Verlag, 2009, pp. 59–69.

[CI28] L. Bourgeade, C. Chauve, and J. Allali, Chaining sequence/structure seeds for computing rnasimilarity, in Lecture Notes in Bioinformatics (LNBI), 2014.

[CI29] L. Bourgeade, T. Martin, and E. Bon, Pseudoe: A computational method to detect psi-genesand explore pseudome dynamics in wine bacteria from the oenococcus genus., in Proccedings of JOBIM2012- 13ème Journées Ouvertes en Biologie, Informatique et Mathématiques, D. T. François Cost, ed.,SFBI, INRIA, 2012, pp. 435–436.

[CI30] R. Bourqui and D. Auber, Large quasi-tree drawing: A neighborhood based approach, in Proc. ofthe 13th International Conference on Information Visualisation, 2009, pp. 653–660.


[CI31] R. Bourqui, F. Gilbert, P. Simonetto, F. Zaidi, U. Sharan, and F. Jourdan, Detectingstructural changes and command hierarchies in dynamic social networks, in Proc. of the 2009 Int. Conf.on Advances in Social Network Analysis and Data Mining, 2009, pp. 83–88.

[CI32] R. Bourqui, H. Purchase, and F. Jourdan, Domain specific vs generic network visualization:an evaluation with metabolic networks, in Proceedings of the twelfth Australasian Conference on UserInterface, 2011, pp. 9–18.

[CI33] R. Bourqui and M. Westenberg, Visualizing temporal dynamics at the genomic and metaboliclevel, in Proc. of the 13th International Conference on Information Visualisation, 2009, pp. 317–322.

[CI34] F. Boudon, C. Preuksakarn, P. Ferraro, J. Diener, E. Nikinmaa, and C. Godin, Quanti-tative assessment of automatic reconstructions of branching systems, in 7th International Conference onFunctional-Structural Plant Models, R. Sievänen, E. Nikinmaa, C. Godin, A. Lintunen, and P. Nygren,eds., 2013, pp. 64–66.


[CI36] O. Curé, G. Blin, D. Revuz, and D. C. Faye, Waterfowl: a compact, self-indexed and inference-enabled rdf store, in 11th European Semantic Web Conference (ESWC’14), LNCS, ed., 2014, p. 15pp.

[CI37] O. Curé, D. C. Faye, and G. Blin, Towards a better insight of rdf triples ontology-guided storagesystem abilities, in 6th International Workshop on Scalable Semantic Web Knowledge Base Systems(SSWS’10), 2010, p. 10pp.

[CI38] J. Dubois, L. Cottret, A. Ghozlane, D. Auber, F. Bringaud, P. Thebault, F. Jourdan,and R. Bourqui, Systrip: a visual environment for the investigation of time-series data in the contextof metabolic networks, in Proceedings of the 16th International Conference on Information Visualization(IV’12), 2012, p. 4771a204.

[CI39] J. Dubois, A. Ghozlane, P. Thebault, I. Dutour, and R. Bourqui, Genome-wide detectionof srna targets with rnav, in Proceedings of the 3rd Symposium on Biological Data Visualization, 2013,pp. 81 – 88.

[CI40] F. El Gharniti, C. Miot-Sertier, M. Dols-Lafargue, E. Bon, A. Lonvaud-Funel, andC. Le Marrec-Le Henaff, Les is30 contribuent à la diversité génétique chez les oenococcus oeni., in17ème Colloque International du Club des Bactéries Lactiques, 2010.

[CI41] C. Fairhead, T. Gabaldón, T. Martin, P. Durrens, O. Lespinet, C. Hennequin,M. Bolotin-Fukuhara, and P. Wincker, Comparative genomics of the nakaseomyces clade: Can-dida glabrata and enew merging pathogens, in Comparative Genomics of Eukaryotic Microorganisms„2011.

[CI42] D. Faye, O. Curé, G. Blin, and C. Thiam, Rdf triples management in rostore, in Actes deIC2011, 2012, pp. 755–770.




F.4. MABIOVIS 337

[CI46] M. Fernandez, H. Kirchner, and B. Pinaud, Strategic port graph rewriting: An interactivemodelling and analysis framework, in Electronic Proceedings in Theoretical Computer Science (EPTCS),A. L. L. Dragan Bošnački, Stefan Edelkamp and A. Wijs, eds., vol. 159, 2014, pp. 15–29.


[CI48] E. Garnaud, S. Maabout, and M. Mosbah, Using functional dependencies for reducing the sizeof a data cube, in Proccedings of the 7th International Symposium on Foundations of Information andKnowledge Systems (FOIKS), Springer, ed., LNCS 7153, 2012, pp. 145–164.

[CI49] A.-L. Gaillard, P. Ferraro, F. Boudon, and C. Godin, Lossy compression of plant architec-tures, in Proceedings of the 6th International Workshop on Functional-Structural Plant Models, 2010,pp. 10–13.

[CI50] A.-L. Gaillard, P. Ferraro, F. Boudon, and C. Godin, Lossy compression of tree architec-tures, in 6th International Workshop on Functional-Structural Plant Models, T. DeJong and D. Da Silva,eds., 2010, pp. 12–15.

[CI51] R. Giot and R. Cherrier, Predicting bikeshare system usage up to one day ahead, in IEEE Sympo-sium Series in Computational Intelligence 2014 (SSCI 2014). Workshop on Computational Intelligencein Vehicles and Transportation Systems (CIVTS 2014), 2014, pp. 1–8.

[CI52] F. Gilbert and D. Auber, From databases to graph visualization, in Information Visualization,2010, p. 128.

[CI53] F. Gilbert and D. Auber, Import automatique et interactif de données dans les systèmes devisualisations, in 11ème Conférence Internationale Francophone sur l’Extraction et la Gestion des Con-naissances EGC 2011, 2011.

[CI54] A. Gouliemakis, J. Bridier, A. Barré, O. Claisse, D. Sherman, P. Durrens, A. Lonvaud-Funel, and E. Bon, How does oenococcus oeni adapt to its environment? a pangenomic oligonucleotidemicroarray for analysis o. oeni gene expression under wine shock., in oeno2011, Actes de Colloques du9ème symposium international d’oenologie de Bordeaux, P. L. A. L. G. d. R. P. T. Univ. BordeauxSegalen (P. Darriet, L. Geny, ed., Dunod, Paris, 2012, pp. 358–363.




[CI58] N. Hanusse, S. Maabout, and R. Tofan, Matérialisation partielle des cubes de données, in Actesdes 25èmes journées "Bases de Données Avancées" BDA’09, 2009, pp. 1–20.



[CI61] T. Hume, H. Soueidan, M. Nikolski, and G. Blin, Algorithmic progress on the cross-speciesconserved active modules detection problem, in 41st International Conference on Current Trends inTheory and Practice of Computer Science, 2015, p. 12pp.


[CI62] P.-Y. Koenig, F. Zaidi, and D. Archambault, Interactive searching and visualization of patternsin attributed graphs., in Proceedings of Graphics Interface, 2010, pp. 113–120.

[CI63] A. Lambert, D. Auber, and G. Mélançon, Living flows: enhanced exploration of edge-bundledgraphs based on gpu-intensive edge rendering, in Proceedings of the 14th International Conference onInformation Visualization (IV’10), 2010, pp. 523–530.

[CI64] A. Lambert, R. Bourqui, and D. Auber, 3d edge bundling for geographical data visualization, inProceedings of the 14th International Conference on Information Visualization (IV’10), 2010, pp. 329–335.

[CI65] A. Lambert, F. Queyroi, and R. Bourqui, Visualizing patterns in node-link diagrams, in Pro-ceedings of the 16th International Conference on Information Visualisation (IV’12), 2012, pp. 48–53.

[CI66] B. Martin, D. Brown, P. Hanna, and P. Ferraro, Blast for audio sequences alignment: afast scalable cover identification, in Proceedings of the 13th International Society for Music InformationRetrieval Conference, 2012.




[CI70] T. Martin and P. Durrens, Génolevures : Policy for automated annotation of genome sequences,in Levures, Modèles et Outils IX, 2010.

[CI71] T. Martin and P. Durrens, Génolevures: Policy for automated annotation of genome sequences,in JOBIM 2011, 2011.

[CI72] T. Martin and P. Durrens, Feedback in the management of genomic data in the gdr génolevures,in ICY2012 13th International Congress on Yeasts, 2012.

[CI73] T. Martin, M. Nikolski, D. J. Sherman, J.-L. Souciet, and P. Durrens, The génolevuresonline database, in Second German/ French/European/ Meeting Yeast and Filamentous Fungi, 2009.

[CI74] T. Martin, D. J. Sherman, M. Nikolski, J.-L. Souciet, and P. Durrens, The génolevureswebsite comparative genomic studies on hemiascomycetous yeasts, in Comparative Genomics of Eukary-otic Microorganisms 2009, 2009.

[CI75] K. Musumbu, M. Diouf, and S. Maabout, Business rules generation methods by merging modeldriven architecture and web semantics, in Proceedings of 2010 IEEE International Conference On Soft-ware Engineering and Service Sciences, L. Wenzheng, ed., vol. IEEE of IEEE, IEEE, 2010, pp. 33–36.

[CI76] M. Nadal and G. Melançon, One graph, multiple drawings, in 2013 17th International ConferenceInformation Visualisation (IV), 2013, pp. 416 – 421.

[CI77] B. Pinaud and P. Kuntz, Gvsr: an on-line guide for choosing a graph visualization software, in18th International Symposium on Graph Drawing, U. Brandes and S. Cornelsen, eds., vol. 6502 ofLNCS, Springer, 2011, pp. 400–401.

[CI78] C. Preuksakarn, F. Boudon, P. Ferraro, J.-B. Durand, E. Nikinmaa, and C. Godin,Reconstructing plant architecture from 3d laser scanner data, in Proceedings of the 6th InternationalWorkshop on Functional-Structural Plant Models, 2010, pp. 12–17.

F.4. MABIOVIS 339

[CI79] B. Renoust, G. Melançon, and M.-L. Viaud, Assessing group cohesion in homophily networks,in Proceedings of the 2013 IEEE/ACM International Conference on Advances in Social Networks Anal-ysis and Mining, 2013, pp. 149–155.

[CI80] B. Renoust, G. Melançon, and M.-L. Viaud, Measuring group cohesion in document collections,in Web Intelligence (WI) and Intelligent Agent Technologies (IAT), 2013 IEEE/WIC/ACM InternationalJoint Conferences on (Volume:1 ), 2013, pp. 373 – 380.


[CI82] A. Sallaberry, F. Zaidi, C. Pich, and G. Melançon, Interactive visualization and navigationof web search results revealing community structures and bridges, in Proceedings of Graphics Interface,2010, pp. 105–112.

[CI83] A. Sarkar, M. Nikolski, and U. Maulik, Spectral clustering on neighborhood kernels with modi-fied symmetry for remote homology detection, in EAIT ’11 Proceedings of the 2011 Second InternationalConference on Emerging Applications of Information Technology, 2011, pp. 269–272.

[CI84] P. Simonetto and D. Auber, An heuristic for the construction of intersection graphs, in Informa-tion Visualization, 2009, pp. 673–678.

[CI85] P. Simonetto, P.-Y. Koenig, F. Zaidi, D. Archambault, F. Gilbert, T. T. Phan Quang,M. Mathiaut, A. Lambert, J. Dubois, R. Sicre, M. Brulin, R. Vieux, and G. Melançon,Solving the traffic and flitter challenges with tulip, in Proceedings of IEEE Symposium on Vast 2009,2009, pp. 247–248.

[CI86] H. Soueidan, G. Sutre, and M. Nikolski, Qualitative transition systems for the abstraction andcomparison of transient behavior in parametrized dynamic models, in Proc. 7th Int. Conf. on Compu-tational Methods in Systems Biology (CMSB’09), Bologna, Italy, Aug.-Sep. 2009, 21, ed., vol. 5688 ofLecture notes in BioInformatics, Springer Verlag, 2009, pp. 313–327.

[CI87] S. Ueno, G. Le Provost, V. Léger, C. Klopp, C. Noirot, J.-M. Frigerio, F. Salin,J. Salse, M. Abrouk, F. Murat, O. Brendel, P. Abadie, P. Léger, C. Cabane, A. Barré,A. De Daruvar, A. Couloux, P. Wincker, M.-P. Reviron, A. Kremer, and C. Plomion,Bioinformatic analysis of sanger and 454 ests in oak, in Forest ecosystem genomics and adaptation.Book of abstracts, Biodiversity International, 2010, p. 73.

[CI88] R. Uricaru, A. Mancheron, and E. Rivals, Novel definition and algorithm for chaining frag-ments with proportional overlaps, in RECOMB’10: Comparative Genomics, E. Tannier, ed., vol. 6398of LNCS, Springer-Verlag, 2010, pp. 161–172.

[CI89] N. Vyahhi, A. Goëffon, D. J. Sherman, and M. Nikolski, Swarming along the evolutionarybranches sheds light on genome rearrangement scenarios, in ACM SIGEVO Conference on Genetic andevolutionary computation, F. Rothlauf, ed., ACM, 2009.

[CI90] X. Yang, F. Sikora, G. Blin, S. Hamel, R. Rizzi, and S. Aluru, An algorithmic view on multi-related-segments: a new unifying model for approximate common interval, in Theory and Applications ofModels of Computation, S. B. C. Manindra Agrawal and A. Li, eds., vol. 7287 of LNCS, Springer-Verlag,2012, pp. 319–329.

[CI91] F. Zaidi and G. Melançon, Evaluating the quality of clustering algorithms using cluster pathlengths, in 10th Industrial Conference, ICDM, vol. 6171/2010, Springer, 2010, pp. 42–56.

[CI92] F. Zaidi and G. Melançon, Identifying the presence of communities in complex networks throughtopological decomposition and component densities, in EGC 2010, Extraction et Gestion de Connaissance,vol. E-19, RNTI, 2010, pp. 163–174.


[CI93] F. Zaidi and G. Melançon, Organization of information for the web using hierarchical fuzzyclustering algorithm based on co-occurrence networks, in WI-IAT ’10, vol. 1, 2010, pp. 421–424.

[CI94] F. Zaidi and G. Melançon, Topological decomposition and heuristics for high speed clustering ofcomplex networks, in Extraction et Gestion de Connaissance, 2012, Hermann, ed., vol. RNTI-E-23, 2012,pp. 447–458.

[CI95] F. Zaidi, A. Sallaberry, and G. Melançon, Revealing hidden community structures and iden-tifying bridges in complex networks: An application to analyzing contents of web pages for browsing, inProceedings of the 2009 IEEE/WIC/ACM International Conference on Web Intelligence and IntelligentAgent Technology, vol. 1, 2009, pp. 198–205.

[CI96] A. Zhukova and D. J. Sherman, Knowledge-based zooming for metabolic models, in JOBIM, 2013.


[CN1] R. Assar, A. Garcia, and D. J. Sherman, Modeling stochastic switched systems with biorica, inJournées Ouvertes en Biologie, Informatique et Mathématiques JOBIM 2011, 2011, pp. 297–304.

[CN2] D. Auber, P. Mary, M. Mathiaut, J. Dubois, A. Lambert, D. Archambault, R. Bourqui,B. Pinaud, M. Delest, and G. Melançon, Tulip: a scalable graph visualization framework, inExtraction et Gestion des Connaissances (EGC) 2010, S. B. Yahia and J.-M. Petit, eds., vol. RNTIE-19, RNTI, 2010, pp. 623–624.

[CN3] A. Ben Zakour, S. Maabout, M. Mosbah, and M. Sistiaga, Relaxing Time Granularity forMining Frequent Sequences, in Advances in Knowledge Discovery and Management, F. G. B. P. . G.V. . D. A. Zighed, ed., Studies in Computational Intelligence, Springer International Publishing, 2014,pp. 53–76.

[CN4] A. Benzakour, S. Maabout, M. Mosbah, and M. Sistiaga, Extraction de séquences fréquentesavec intervalles d’incertitude, in Actes de la 12e Conférence Internationale Francophone sur l’Extractionet la Gestion de Connaissance (EGC), RNTI (Revue des nouvelles technologies de l’information), Her-mann, 2012, p. 12 pages.


[CN6] E. Bon, A. Delaherche, E. Bilhere, C. Miot-Sertier, P. Durrens, A. De Daruvar,A. Lonvaud-Funel, and C. Le Marrec, Oenococcus oeni genome plasticity associated with adapta-tion to wine, an extreme ecological niche, in JOBIM-10èmes Journées Ouvertes en Biologie, Informatiqueet Mathématiques, E. Rivals and I. Rusu, eds., 2009, pp. 121–122.

[CN7] E. Bon, C. Miot-Sertier, M. Dols-Lafargue, G. Morel, A. Lonvaud-Funel, andC. Le Marrec, A 24 kb-genomic island contributing to oenococcus oeni adaptation to wine can excisefrom the chromosome, in 16th CBL-Club des Bactéries Lactiques Meeting, 2009.

[CN8] L. Bourgeade, T. Martin, A. Goulielmakis, A. Lonvaud-Funel, P. Lucas, and E. Bon,Cracking the pseudome code: Inside the "silent" psi-genes language to reconstruct oenococcus oeni evo-lutionary adaptation to wine, in Proceedings of the 18th CBL-Club des Bactéries Lactiques Meeting,U. C. VetAgroSup, ed., 2012.

[CN9] J. Dubois, L. Cottret, A. Ghozlane, D. Auber, F. Bringaud, P. Thébault, F. Jourdan,and R. Bourqui, Visualization of time-series data in the context of metabolic networks with systripsoftware, in Proceedings of Journées Ouvertes Biologie Informatique Mathématiques, 2013.

[CN10] J. Dubois, A. Ghozlane, P. Thébault, I. Dutour, and R. Bourqui, A visualization approachto analyse bacterial srna-mediated regulatory networks, in Proceedings of Journées Ouvertes BiologieInformatique Mathématiques, 2013.

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[CN13] E. Garnaud, S. Maabout, and M. Mosbah, Dépendances fonctionnelles et matérialisationpartielle des cubes de données, in Actes des 7èmes journées francophones sur les Entrepôts de Donnéeset Analyse en ligne, RNTI (Revue des Nouvelles Technologies de l’Information), Hermann, 2011.

[CN14] R. Giot, M. Descoteaux, and C. Charrier, Classification de phénomènes de diffusion de l’eaude données d’irm de diffusion, in GRETSI 2013, 2013.


[CN16] T. Martin and P. Durrens, Génolevures : Politique d’annotation automatique des génomes delevures (yaga), in 10e rencontre Levures Modèles & Outils, 2012.

[CN17] T. Martin, D. J. Sherman, and P. Durrens, Génolevures, knowledge base and annotationof hemiascomycete yeast genomes, in Journée Ouvertes Biologie Informatique Mathématiques, JOBIM2010, 2010.

[CN18] T. Martin, D. J. Sherman, M. Nikolski, J.-L. Souciet, and P. Durrens, Base de donnéesgénolevures : génomique comparative des hemiascomycetes, in Journée Ouvertes Biologie InformatiqueMathématiques, JOBIM 2009, E. Rivals and I. Rusu, eds., 2009, pp. 181–182.

[CN19] M. Nadal and G. Melançon, Dessin de graphe assisté par un algorithme génétique, in 9ème édi-tion de la conférence MAnifestation des JEunes Chercheurs en Sciences et Technologies de l’Informationet de la Communication - MajecSTIC 2012 (2012), A. Etien, ed., 2012.

[CN20] F. Queyroi, Validation et optimisation d’une décomposition hiérarchique de graphes, in 12e Con-férence Internationale Francophone sur l’Extraction et la Gestion des Connaissances, 2012.

[CN21] B. Renoust, G. Melançon, and M.-L. Viaud, Mesurer l’intrication sémantique dans une col-lection de documents, in EGC Atelier Fouille de Grands Graphes, 2013, pp. 18–29.

[CN22] B. Renoust, M.-L. Viaud, and G. Melançon, Mesure de cohérence dans la découverte et lavisualisation d’évènements médiatiques, in Seconde conférence sur les Modèles et l’Analyse des Réseaux:Approches Mathématiques et Informatique (Marami), 2011, p. 4.

[CN23] R. RIEKE, M. Zhdanova, J. Repp, R. Giot, and C. Gaber, Verhaltensanalyse zur erken-nung von missbrauch mobiler geldtransferdienste, in GI Sicherheit 2014, S. Katzenbeisser, V. Lotz, andE. Weippl, eds., vol. P-228, GI, 2014, pp. 271–282.

[CN24] R. Uricaru, C. Michotey, L. Noé, H. Chiapello, and E. Rivals, Improved sensitivity and re-liability of anchor based genome alignment, in JOBIM’09 : Journées Ouvertes en Biologie, Informatiqueet Mathématiques, E. Rivals and I. Rusu, eds., 2009, pp. 31–36.


[SI1] A. Barré, C. Lemaitre, P. Thebault, A. De Daruvar, A. Blanchard, and P. Sirand-Pugnet, Molligen 3.0, evolution of a database dedicated to the comparative genomics of mollicutes, inCongress of the International Organization for Mycoplasmology ; 2010/07/11-16 ; Chianciano Terme(ITA). IOM congress 2010., 2010.

[SI2] L. Beven, C. Citti, P. Sirand-Pugnet, D. Marie-Pierre, P. Thebault, E. Sagné, C. Sail-lard, A. Barré, S. Claverol, A. De Daruvar, J. Renaudin, and A. Blanchard, Shaping thesurface proteome of minimal bacteria, in Congress of the International Organization for Mycoplasmology; 2010/07/11-16 ; Chianciano Terme (ITA). IOM congress 2010, 2010.


[SI3] G. Blin, P. Bonizzoni, R. Dondi, and F. Sikora, On the parameterized complexity of the repetitionfree longest common subsequence problem, in International Workshop on Approximation, Parameterizedand EXact algorithms (APEX’13), A. et al., ed., 2013, p. 3 pp.

[SI4] G. Blin, M. Crochemore, S. Hamel, and S. Vialette, Finding the median of three permutationsunder the kendall-tau distance, in 7th annual international conference on Permutation Patterns, U. degliStudi di Firenze, ed., 2009, p. 6.

[SI5] A. Ghozlane, F. Bringaud, F. Jourdan, and P. Thebault,Metaboflux : a method to analyze fluxdistribution in metabolic networks, in Workshop Metabolomics2010, AmsterdamRAI, the Netherlands,2010.

[SI6] N. Golenetskaya and D. J. Sherman, Assessing ”last mile” tools for affinity binder databases, in5th ESF Workshop on Affinity Proteomics: Ligand Binders against the Human Proteome, 2011.

[SI7] N. Golenetskaya and D. J. Sherman, Rethinking global analyses and algorithms for comparativegenomics in a functional mapreduce style, in SeqBio 2011, 2011.

[SI8] T. Hume, H. Soueidan, V. F. Wong Jun Tai, A. Vekris, K. Petry, and M. Nikolski, Efficientmapping of short peptides on whole proteome database for biomarker discovery, in JOBIM 2013, 2013.

[SI9] A. Lambert and D. Auber, Graph analysis and visualization with tulip-python, in EuroSciPy 2012- 5th European meeting on Python in Science, 2012.

[SI10] N. Loira and D. J. Sherman, Genome-scale metabolic reconstruction of the eukaryote cell factoryyarrowia lipolytica, in 11th International Conference on Systems Biology, 2010.

[SI11] A. Mancheron, R. Uricaru, and E. Rivals, Ehrlichia ruminantium genome segmentations re-veal novel homologous genes, in ISCB Africa ASBCB Joint Conference on Bioinformatics of InfectiousDiseases, 2009.

[SI12] B. Pinaud, J. Dubois, and G. Melançon, Porgy: Interactive and visual reasoning with graphrewriting systems, in Conf. on Visual Analytics Science and Technology (VAST), 2011 IEEE (PosterAbstract), 2011, pp. 293–294.

[SI13] B. Pinaud and G. Melançon, Porgy : réécriture et visualisation de graphes dynamiques, in Extrac-tion et Gestion des Connaissances (EGC 2010), 8e Atelier Visualisation et Extraction de Connaissances,2010.

[SI14] D. J. Sherman, N. Golenetskaya, T. Martin, and P. Durrens, Comparative annotation andscaling-out challenges for paraphyletic strategies, in EMBO Symposium on Comparative Genomics ofEukaryotic Microorganisms: Understanding the Complexity of Diversity, 2011.

[SI15] A. Zhukova and D. J. Sherman, Knowledge-based generalization of metabolic networks: An appli-cational study, in Moscow Conference on Computational Molecular Biology, 2013.

[SI16] A. Zhukova and D. J. Sherman, What is the optimal representation of a generalized metabolicmodel using sbml and sbgn?, in COMBINE 2013, 2013.


[SN1] A. Ghozlane, J. Dubois, I. Dutour, R. Bourqui, M. Breton, and P. Thebault, irna: Inte-grative pipeline for genome-wide detection of srna targets, in "Autour des ARNs non codant" - Rencontrebioinformatique 2012, 2012.

[SN2] T. Martin and P. Durrens, Un polymorphisme suspect, in Unithé ou Café, 2011.

[SN3] G. Melançon, M. Noirhomme-Fraiture, and B. Pinaud, Évaluation des interfaces visuelles, inAtelier Visualisation d’informations, interaction et fouille de données - Conférence Extraction et Gestiondes Connaissances 2013 (EGC’2013), 2013.

BIBLIOGRAPHY 343

[SN4] B. Pinaud, Porgy : un environnement interactif et visuel pour la simulation de systèmes complexesbasé sur tulip et sur la réécriture de graphes, in Journée Réseaux Dynamiques, 2012.

[SN5] B. Pinaud, Analyse de graphes dynamiques issus d’un processus de réécriture de graphes, in IHM2013, Groupe de travail "Visualisation d’information, Interaction, et Fouille de données", 2013.


[AI1] D. Auber, D. Archambault, R. Bourqui, A. Lambert, M. Mathiaut, P. Mary, M. Delest,J. Dubois, and G. Melançon, The tulip 3 framework: A scalable software library for informationvisualization applications based on relational data, tech. rep., 2012.

[AI2] G. Blin, Combinatorial Objects in Bio-Algorithmics: Related problems and complexities, PhD thesis,Université Sciences et Technologies - Bordeaux I, 2012.

[AI3] A. Garcia and D. J. Sherman, Mixed-formalism hierarchical modeling and simulation with biorica.2010.

[AI4] C. Godin and P. Ferraro, Quantifying the degree of self-nestedness of trees. application to thestructural analysis of plants, tech. rep., 2009.

[AI5] A. Mancheron, R. Uricaru, and E. Rivals, A novel approach for comparative genomics & an-notation transfer. 2010.

[AI6] G. Melançon, B. Renoust, and M.-L. Viaud, Mesurer la cohésion sémantique dans les corpusde documents, tech. rep., 2012.

[AI7] M. Nadal and G. Melançon, Reusable genomes : Welcome to the green genetic algorithm world,tech. rep., 2013.

[AI8] B. Olivier, E. Lutton, P.-H. Wuillemin, C. Baudrit, M. Sicard, B. Pinaud, and N. Per-rot, Modeling an agrifood industrial process using cooperative coevolution algorithms, tech. rep., 2009.

[AI9] F. Queyroi and Y. Chiricota, Visualization-based communities discovering in commuting networks: a case study, tech. rep., 2011.

[AI10] G. A. T. Sacomoto, J. Kielbassa, P. Antoniou, R. Chikhi, R. Uricaru, M.-F. Sagot,P. Peterlongo, and V. Lacroix, kissplice, détection d’évènements d’épissages alternatifs dans lesdonnées rna-seq, tech. rep., 2011.

[AI11] D. J. Sherman and N. Golenetskaya, Databases and ontologies for affinity binders. Overviewof advances in defining ontologies and building knowledge bases for affinity binders, over the four yearsof the ProteomeBinders project. Presented at the Affinomics/ProteomeBinders workshop at the MøllerCenter, Churchill College, Cambridge University., 2010.

[AI12] D. J. Sherman and N. Loira, Reconstruction and validation of the genome-scale metabolic modelof yarrowia lipolytica inl750. JOBIM 2010 Poster, 2010.

[AI13] P. Simonetto, Diagrammes d’Euler pour la visualisation de communautés et d’ensembleschevauchants, PhD thesis, Université Sciences et Technologies - Bordeaux I, 2011.

[AI14] F. Zaidi, Analyse, Structure et Organisation des Réseaux Complexes, PhD thesis, Université Scienceset Technologies - Bordeaux I, 2010.

[AI15] F. Zaidi, A. Sallaberry, and G. Melançon, Generating artificial social networks with smallworld and scale free properties, tech. rep., 2012.

[AI16] A. Zhukova, Metabolic model generalization. 2013.


[AI17] A. Zhukova and D. J. Sherman, Biological knowledge, problem detecting, model refinement anddiagnostics. Poster at Joint EMBL-EBI-Wellcome Trust Course: In silico Systems Biology 23-27 April2012, 2012.


[AN1] W. Dyrka, F. Thirion, J.-C. Nebel, and M. Kotulska, Probabilistic context-free grammars forclassification of helix-helix contact sites and recognition of amyloidogenic peptides. 2013.

[AN2] P.-Y. Koenig, Visualisation d’information : paradigmes de navigation multi-echelle et approches"focus+contexte", PhD thesis, Université Sciences et Technologies - Bordeaux I, 2009.

[AN3] A. Lambert, Visualisation interactive de graphes : élaboration et optimisation d’algorithmes à coûtscomputationnels élevés, PhD thesis, Université Sciences et Technologies - Bordeaux I, 2012.

[AN4] M. Nadal, Assistance à l’utilisateur novice dans le cadre du dessin de graphe à l’aide de méthodesd’apprentissage, PhD thesis, Université Sciences et Technologies - Bordeaux I, 2013.

[AN5] B. Pinaud, J. Dubois, and G. Melançon, Porgy : une plate-forme visuelle et interactive pour laréécriture de graphes : présentation lors de la journée visu 2012. 2012.

[AN6] F. Queyroi, Partitionnement de grands graphes : mesures, algorithmes et visualisation, PhD thesis,Université Sciences et Technologies - Bordeaux I, 2013.

[AN7] B. Renoust, M.-L. Viaud, and G. Melançon, Cohérence d’évènements médiatiques, tech. rep.,2011.



Patents– J. Allali, Dépôt de brevet: PCT/IB/2012/055673, Titre : A PROCESS FOR ASSIGNING AUDIO DATAIN MISSING AUDIO PARTS OF A MUSIC PIECE AND DEVICE FOR PERFORMING THE SAME

Registered software– Visualization Platform, Tulip 3.3.0, Deposit APP: IDDN FR 001 180009 000 S P 2010 000 10000.– SNP detection software, Kissnp2, Deposit APP: IDDN FR 001 320004 000 S A 2013 000 31235

Other software– Plateforme de visualisation Tulip 4.X, environ 27000 téléchargements depuis août 2012 et 500000 lignesde code

– rNAV 2.0, http://rnav.labri.fr

Completed PhDs– Alexis Clay (20%), 7 décembre 2009, titre “The emotion Branch, a conceptual model for integratingmultimodal emotion recognition in interactive software: application to movement and augmented dance”,Post-doctorant estia actuellement– Guillaume Rivière (20%), 9 septembre 2009, titre “Interaction Tangible sur Table Interactive : applicationaux géosciences”, actuellement Enseignant chercheur permanent ESTIA

– Pierre-Yves Koenig, 12 novembre 2009, titre “Visualisation d’information : paradigmes de navigationmulti-echelle et approches “focus+contexte”.

Université Montpellier II, actuellement ingénieur SSII sur la région de Toulouse.

F.4. MABIOVIS 345

– Hayssam Soueidan, 4 décembre 2009, titre ”Discrete Event Modeling and Analysis for Systems BiologyModels”; actuellement postdoctorant à SIRIC, Bordeaux

– Faraz Zaidi, 15 novembre 2010, titre “Analyse, Structure et Organisation des Réseaux Complexes”, actuelle-ment Associate Professor au PAF KIET, Pakistan.

– Radu Tofan, 2010, titre “Bordures : de la sélection de vues dans un cube de données au calcul parallèle defréquents maximaux”, passage dans une université roumaine comme assistant professeur, puis actuellementingénieur dans une entreprise en Roumanie.

– Arnaud Sallaberry, Visualisation d’information : de la théorie sémiotique à des exemples pratiques baséssur la représentation de graphes et d’hypergraphes. Université Sciences et Technologies - Bordeaux I(18/10/2011), actuellement MCF Université Montpellier 3.

– Paolo Simonetto, 2011, titre “Visualisation of Overlapping Sets and Clusters with Euler Diagrams”,actuellement dans l’industrie en Italie.

– Rodrigo Assar Cuevas, 21 octobre 2011, titre “Modeling and simulation of Hybrid Systems and Cellfactory applications”, actuellement chercheur contractuel à l’Universitad Andres Bello, Santiago (Chili),actuellement Assistant Professor, Instituto de Ciencias Biomédicas (ICBM), University of Chile, Chile

– Anne-Laure Gaillard, 30 novembre 2011 , titre “Identification de motifs au sein des structures biologiquesarborescentes”, Ingénieur en Technologie de l’Information, Logica, CGI de Bordeaux, (Aquitaine)

– Anasuar Sarkar, 15 décembre 2011, titre ””, actuellement ingénieur in Government College of Engineeringand Leather Technology, Kolkata, India

– Nicolas Loira, janvier 2012, titre “Scaffold-based Reconstruction of Genome-Scale Metabolic Models”;actuellement Researcher FONDECYT Fellowship, Centro de Modelamiento Matemático (CMM), Univer-sity of Chile, Chile

– Frédéric Gilbert, mars 2012, titre “Modèles et méthodes pour l’analyse et la visualisation de donnéesmultidimensionnelles dynamiques”, Actuellement industriel à Bordeaux

– Asma Ben Zakour, 6 juillet 2012, titre “Extraction des utilisations typiques à partir de données hétérogènesen vue d’optimiser la maintenance d’une flotte de véhicules”, actuellement Ingénieur de Recherche chezAc2Mo à Bidart

– Amine Ghozlane, 20 novembre 2012, titre “Développements de méthodes bioinformatiques dédiées à laprédiction et l’analyse des réseaux métaboliques et des ARNs non codant”, actuellement post-doctorant àl’INRA à Paris

– Antoine Lambert, 12 décembre 2012, “Visualisation interactive de graphes : élaboration et optimisationd’algorithmes à coûts computationnels élevés”, actuellement ingénieur de recherche chez Thalès à Paris

– Benjamin Martin, 12 décembre 2012, “Analyse de structures répétitives dans les séquences musicales”,actuellement ingénieur de recherche chez SIMBALS

– Natalia Golenetskaya, septembre 2013, titre “Addressing scaling challenges in comparative genomics”;actuellement Business Analyst, eBay Inc., Switzerland

– Francois Queyroi, octobre 2013, titre ” Mesures et algorithmes de fragmentation multi-échelle de grandsensembles de données”; actuellement Post-doc au LIP6, Univ. Paris 6 et Chargé de recherche CNRS àcompter du 1/10/14

– Eve Garnaud, 12 Novembre 2013, “Dépendances fonctionnelles: Extraction et exploitation”.– Benjamin Renoust, décembre 2013, “Analyse et visualisation de l’intrication d’arêtes dans les réseauxmultiplex”, actuellement sans emploi. A partir de septembre 2014, Post-doc Japon, UMI Japon France

– Maurin Nadal, décembre 2013, “Assistance à l’utilisateur novice dans le cadre du dessin de graphes à l’aidede méthodes d’apprentissage”, actuellement Ingénieur R&D, société Yseop, Lyon

including cotutelle PhDs (international)

including cotutelle PhDs (national)

Completed habilitations– Macha Nikolski, 6th october 2009 (Université Bordeaux I), title “From Genomic to Functional Models”.– David Auber, 7th december 2012, (Université Bordeaux I), title “Visualisation de graphes”



Steering committee (international)

Steering committee (national)– B. Pinaud, G. Melançon : EGC (Extraction et Gestion de Connaissances) (depuis 2012)– B. Pinaud : membre du bureau de la société savante EGC (depuis 2013)

Program committee (international)– G. Melançon, program committee of Graph Drawing 2012– G. Melançon, program committee of ACM CIKM 2011– G. Melançon, program committee of Eurovis 2009, 2011– G. Melançon, program committee of IEEE PacificVis 2009 2010– G. Melançon, program committee of IEEE Infovis (2009-2013)– G. Melançon, program committee of IEEE VAST 2011-2013– S. Maabout, program committee of DaWaK 2013, 2014– G. Melançon, program committee of INTERACT 2011 2013– G. Melançon, program committee of ISVC 2009 2010– G. Melançon, program committee of IV 2009, 2012, 2013– G. Melançon, program committee of ACM KDD 2011– S. Maabout, program committee of DOLAP 2013– R. Uricaru, program committee of Recomb CG 2013– M. Nikolski, program committee of Recomb CG 2011,2013,2014– M. Nikolski, program committee of Recomb WABI 2012

Program committee (national)– G. Melançon, Members of the third Comité mixte franco-américain de la coopération en science ettechnologie (MENRT)

– R. Bourqui, Members of the third Comité mixte franco-américain de la coopération en science et tech-nologie (MENRT)

– M. Nikolski, program committee of JOBIM’13– P. Thébault, program committee of JOBIM’13– S. Maabout, BDA (2009, 10, 11, 13, 14)– S. Maabout, EDA (2010, 11, 12, 13, 14)– G. Melançon, B. Pinaud EGC 2012 2013 2014– G. Melançon, IHM 2009, 2011.– R. Giot, RFIA, 2014.– R. Uricaru, SeqBio 2013– S. Maabout, program committee chair of MEDI 2013– M. Nikolski, program committee chair of RECOMB-CG 2013

Presidence of program committee (international)– G. Melançon, program committee co-chair, Eurovis 2010

Presidence of program committee (national)– S. Maabout, program committee chair d’EDA 2012

Organizing committee (conferences, seminaries, schools...) (international)– D. Auber, R. Bourqui, G. Melançon, B. Pinaud, Graph Drawing 2013– M. Nikolski et R. Bourqui, BioNetVis Spécial session dans ISMB-ECCB 2013 BERLIN

F.4. MABIOVIS 347

– G. Melançon, Eurovis 2010, http://eurovis2010.labri.fr/– M. Nikolski, Recomb-CG 2013, Lyon, France– M. Nikolski, Workshop on Next Generation Sequencing Technologies, Zvenigorod, Russie, 2010– S. Maabout, FOIKS 2014, http://2014.foiks.org– R. Giot, RaSIEM 2013

Organizing committee (conferences, seminaries, schools...) (national)– G. Melançon and B. Pinaud, Extraction et Gestion de connaissances EGC 2012, http://egc2012.labri.fr– S. Maabout, EDA 2012– T. Martin, Journées GrisBi (Grille, Support pour la Bioinformatique) 2011– S. Maabout, Comité scientifique pour l’organisation de l’école d’été “Masses de Données Distribuées” 2014,http://webdam.inria.fr/SummerSchool-2014/

Presidence of organizing committee (international)

Presidence of organizing committee (national)

Journal editorial board (international)– B. Pinaud, co-editor, proceedings of EGC 2012, 2013– P. Durrens, Journal ISRN Computational Biology, 2012– D. Sherman, Journal Computational and Mathematical Methods in Medicine, 2010– M. Delest, editor 1994-2013, The Electronic Journal of Combinatorics– G. Melançon, editor since 2008, Revue I3 (Cépaduès)– G. Melançon, T. Munzner, D. Weiskopf, invited editors, special issue of Computer Graphics Forum –international proceedings of EuroVis 2010

Journal editorial board (national)– B. Pinaud et G. Melançon, invited editor, national journal RNTI from the conference EGC 2012– S. Maabout,invited editor, national journal RNTI from the confrence EDA 2012– B. Pinaud : special issue « visualisation de grandes masses de données » of the journal TSI (Technique etScience Informatique). 2014 (numéro 33/4 ou 33/5)

Research animation (international)

Research animation (national)– Comité de pilotage de l’Institut Francais de Bioinformatique (IFB)– Groupe de travail “Visualisation” (GDR IGRV)– Groupe de travail VIF Visualisation Interactive et Fouille (EGC / AFIHM)



Presidence of expert committee (national)

Membership in expert committee (international)– D. Auber, Netherlands Organisation for Scientific Research (2011): Innovational Research– D. Auber, Incentives Scheme , ANR (2009): International Non-Thematic

Membership in expert committee (national)– A. de Daruvar, pour la section recherche de l’AERES, évaluation de l’Unité de Recherches en GénomiqueInfo (URGI, UR1164) , 2014

– A. de Daruvar, pour la section établissement de l’AERES, évaluation de l’École Normale Supérieure deCachan , 2014


– M. Delest, Déléguée scientifique AERES, 2009-2012– M. Delest, Déléguée scientifique AERES cordinatrice des STIC, 2012-– M. Delest, Membre du comité ANR retour Pos-doc 2011-2013– G. Melançon, Membre comité d’évaluation mi-parcours laboratoire ERIC, Université Lyon 2, 2013– G. Melançon, Membre jury ANR CONTINT 2010– G. Melançon, Membre nommé de la section CNU 27 Informatique 2007 2011– S. Maabout, Membre élu du bureau de la section 27 du CNU (2011-2014)– P. Durrens, Manager éditorial pour la base Génolevures, 2009-– M. Nikolski, Membre du Bioinformatics Steering Comittee du SIRIC (Sites de Recherche Intégrée sur leCancer), BRIO

– P. Durrens, Expert en Génomique auprès du Fonds de la Recherche Scientifique-FNRS, Belgique– T. Martin, Membre du comité de pilotage et du comité technique de GRISBIGrille pour la bioinformatique,GIS IBISA, 2008-2010, Lyon France

– S. Maabout, Expertises pour le compte des DRRT-Aquitaine, Ile-de-France, Centre et pour le ministèrede l’enseignement supérieur et de recherche pour des dossiers de Crédit-Impôt-Recherche

– M. Nikolski, Expertises pour le compte de l’Offensive Sciences RMT (Union Européenne), 2011-2012– M. Nikolski, Expertises auprès de l’ANR pour les projets ANR PDOC, 2012– P. Thébault, Expertises auprès de l’ANR pour les projets ANR PDOC, 2013– G. Melançon, Expertise ANR Blanc 2010, CSOSG 2010, SIMI2 2011– M. Nikolski, Expertises de dossiers auprès de EFS (Etablissement Francais du Sang), 2012– Expertises pour le compte de l’ANRT pour des dossiers de bourse CIFRE– G. Melançon, Expertise régionale Digiteo (Paris) 2010, INRA/Pays de la Loire 2010 )– G. Melançon, Expertise NWO (Pays-Bas) 2010– G. Melançon, Jury évaluation mi-parcours laboratoire ERIC Lyon 2013– B. Pinaud, Expertise un dossier de thèse pour l’institut des systèmes complexes Paris Ile-de-France, appelà projets 2014, http://www.iscpif.fr/AAP2014

– S. Maabout, Expertise pour l’ANR (2014)

Individual expert (reviewer) (international)– Agence A3ES (Portugal), 2013 (M. Delest)– NWO (Netherlands Organisation for Scientific Research, NL) 2010, 2012 (G. Melançon)– Offensive sciences RMT 2012 (M. Nikolski)

Presidence of selection board

Membership in selection board– S. Maabout, University of Marseille, 2012– S. Maabout, University of Poitiers, 2012– S. Maabout, ENSMA, 2013– S. Maabout, CNAM Paris, 2014– M. Nikolski, INRA, 2012– M. Nikolski, INRIA Saclay, 2009– E. Bon et P. Durrens, Université de Strasbourg, 2009– G. Melançon, University of Paul Sabatier 2009 (twice)– G. Melançon, University of Montpelier 3, 2009– G. Melançon, University of Paris 13, 2011– B. Pinaud, University of Toulouse, 2013– P. Thébault, University of Toulouse, 2014– M. Nikolski, University of Toulouse, 2014

F.4. MABIOVIS 349

– R. Bourqui, University of Lyon 1, 2014– G. Melançon, University of Rennes, 2014

Membership in prize jury– M. Delest, Prix “Femmes en Or”, création de la catégorie Recherche et Innovation, jury member since 2004– G. Melançon, Prix de thèse EGC 2013– G. Melançon, Prix de thèse ASTI 2009

Reviewing of PhD or habilitation (international)– M. Nikolski, phd of Ivan V. Kulakovskiy, GosNIIGenetika, Moscou, 2010– M. Nikolski, phd of Yu. V. Mikhailova, GosNIIGenetika, Moscou, 2009– G. Melançon, Ozan Ersoy, University of Groningen, Pays-Bas, 2013– G. Melançon, Colin Myers, Leeds University, UK, 2013– G. Melançon, Mike Farrugia, University College, Dublin, Ireland, 2012

Reviewing of PhD or habilitation (national)– M. Nikolski, phd of Yassin Refahi, University of Montpellier, 2011– G. Melançon, HDR of Sylvie Ranwez, University of Montpellier, 2013– G. Melançon, HDR of Hanène Azzag, Université Paris 13 - Paris Sorbonne Cité, 2013– G. Melançon, HDR of Michaël Aupetit, Université d’Orsay Paris Sud, 2012– G. Melançon, HDR of Bénédicte Legrand, Université Pierre et Marie Curie, 2011– G. Melançon, HDR of Clémence Magnien, Université Pierre et Marie Curie, 2010– G. Melançon, PhD of Nicolas Greffard, Université de Nantes, 2013– G. Melançon, PhD of Abdelheq Et-tahir Guettala, Ecole Polytechnique, Université de Tours, 2013– G. Melançon, PhD of Cassio Melo, Ecole Centrale Paris, 2013– G. Melançon, PhD of Juan David Cruz Gomez, ENST Bretagne, 2012– G. Melançon, PhD of Wael Khemiri, Université Paris XI, 2011– G. Melançon, PhD of Eric Mermet, COGIT-IGN, 2011– G. Melançon, PhD of Stéphanie Rialle, Université Montpellier 2, 2010– G. Melançon, PhD of Yann Champclaux, Université Paul Sabatier, Toulouse, 2009

Membership of PhD/habilitation committee (international)

Membership of PhD/habilitation committee (national)– M. Nikolski, HDR of Nicolas le Novère, University of Bordeaux, France, 2013– S. Maabout, phd of Isma Sadoune au PRISM, l’UVSQ, 2014– S. Maabout, phd of Maurin Nadal, LaBRI, Bordeaux, 2013– S. Maabout, phd of Chedlia Chakroune, LIAS, ENSMA Poitiers, 2013– S. Maabout, phd of Guillaume Vicien, IMS, Bordeaux, 2010– J. Allali, phd of Cédric Saule, LRI, Orsay, 2010– J. Allali, phd of Michel Chilowicz, LIGM, Marne la Vallée, 2010– G. Melançon, HDR of Cédric Chauve, Université Bordeaux I, 2011– G. Melançon, HDR of Martin Hachet, Université Bordeaux I, 2010– G. Melançon, HDR of Macha Nikolski, Université Bordeaux I, 2009– G. Melançon, PhD of Assia Hamzaoui, LIP6, Paris, 2011– G. Melançon, PhD of Michel Nabaa, Université du Havre, 2011– G. Melançon, PhD of Christophe Hurter, Ecole Nationale Aviation Civile, 2010



Projects (international)– INSITE, 2010-2013, FP7 FET,Guy Melançon, coord. David Lane– COSMOS, 2012-2016, FP7, Macha Nikolski,coord. Christophe Steinbeck– Emergence by design (MD), 11-14 , FP7 FET, Guy Melançon, coll. Università Ca’ Foscari Venezia, Venise– PORGY, 2009-2011, Equipe Associée INRIA, Bruno Pinaud

Projects (national)– Request, 2014-2017, PIA APP « cloud computing » – Big data, David Auber, coord. Thales– SpeedData, 2013-2016, PIA APP « cloud computing » – Big data, Romain Bourqui, coord. AT Internet– Pep TEAM, 2013-2014, PEPS IDEX-CNRS, Macha Nikolski– MycoRNA, 2013-2014, PEPS IDEX-CNRS, Patricia thébault– rVIZ, 2013-2013, AAP Bordeaux, David Auber– BIO DATA CLOUD, 2014-2015, APP « cloud computing » – Big data, M. Nikolski, coord. Biogemma, 32KE

– SIMID, 2010-2012, FUI, Mosbah, Franck Duluc., EADS– Amadeus, 2012-2013, CNRS: Appel à projet interdisciplinaire, Défi: Masses de données scientifiques, SofianMaabout

– MexCulture, 2012-2015 , ANR, coord. Benois-Pineau , CNAM Paris– EVIDEN, 2012-2014, ANR JCJC, Bruno Pinaud– GRISBI, 2009-2011 Plateforme IBISA Tiphaine Martin, coord. Christophe Blanchet IBCP, Lyon– Génolevures, 2010-2014 , APP Aquitaine, “plate-forme mutualisée”, Pascal Durrens– Dyvi, 2010-2011, ARC INRIA , G. Melançon, coord. E. Fleury, ENS Lyon– GRISBI - IDG, 2009-2010, Soutien par l’Institut des Grilles du projet GRISBI, Tiphaine Martin, coord.Christophe Blanchet, IBCP, Lyon

– DIVOENI, 2009-2012, ANR, Elisabeth Bon ,coord. Aline Lonvaud– Self-similarity in Music, 2009-2009, PEPS (CNRS), Pascal Ferraro– BRASERO, 2006-2010, ANR Blanc, Pascal Ferrao, coord. Alain Denise– Blast musical, 2011-2011, DRI - U. Bordeaux 1, Pascal Ferraro– Evolmyco, 2007-2010, ANR-07-GMGE -0, Antoine de Daruvar, coord. Alain Blanchard– ABRIWG, 2012-2014, ANR Chaire d’Excellence, Macha Nikolski, coord. Albert Abbott– SysTryp, 2008-2011, ANR BioSys, Guy Melançon, coord. M. Barrett– TANGUY, 2008-2012, ANR CONTINT, Guy Melançon, coord. J. Rohmer

Joint publications (international)– Department of Mathematics of Simon Fraser University (Cédric Chauve), Vancouver, Canada– Cheminformatics and Metabolism Group, European Bioinformatics Institute (EBI), Hinxton, UK– Technical University of Catalonia, Barcelone, Espagne– Netherlands Cancer Institute, Amsterdam, Pays-Bas– PAF Karachi Institute of Economics and Technology, Pakistan– Université de Chicoutimi, Québec, Canada– Ecole de Technologie Supérieure, Montréal, Canada– Dept Computer Science, King’s College, Londres, UK– Université of British Columbia, Vancouver, Canada– Université de Sheffield, South Yorkshire , UK– Università Ca’ Foscari Venezia, Venise, Italie– Chalmers Tekniska Hoegskola AB, Gothenburg, Suede– Technical Universitéy of EIndhoven, Eindhoven, Pays Bas

F.4. MABIOVIS 351

– Faculté des géosciences et de l’environnement. Institut de géographie et durabilité, Lausanne, Suisse.– Life science biomedical research center, University of Glasgow, Glasgow, Ecosse.– University of Houston, Houston, USA– University of Calabria, Calabria, Italy– Department of Computing Science, University of Glasgow, Glasgow, UK

Joint publications (national)– Ecole normale supérieur de Lyon, France– UMR INRA, UB2 1219 Oenologie, Bordeaux, France– UMR 1332 Biologie du Fruit et Pathologie / INRA / Université de Bordeaux, France– UMR 5536 / Centre de Résonance Magnétique des Systèmes Biologiques (RMSB), France– Service de Rhumatologie – CHU Bordeaux, France– Equipe Neuroinflammation, imagerie et thérapie de la Sclérose en Plaques-Equipe associée, INSERMU1049, France

– Institut de la Vigne et du Vin de Bordeaux (ISVV), Bordeaux, France– Equipe VIE, Institut National Audio-Visuel, Paris, France– Inria (siège), Paris, France

Other collaborations (international)Other collaborations (national)– Clemson University (Albert Abbott), Clemson, South California, USA– Institute of Biological Research & Biotechnology, NHRF, Athènes, Grèce

Research visitors (international)– Aristotelis Chatziioannou, Institute of Biological Research and Biotechnology, NHRF, Athenes, Grèce– Cédric Chauve, Department of Mathematics of Simon Fraser University (Canada)– Carlos Ordonez, Department of Computer Science, University of Houston (USA)

Research visitors (national)Research visits (international)– Sherman D. J., Workshop on Evolutionary Algorithms - Challenges in Theory and Practice (2010), Twoexamples of evolutionary algorithms in reconstructing genome evolution

– Sherman D. J., Colloquium LIX, Methods for understanding function and history in small eukaryotegenomes (2010)

– Golenetskaya N. and Sherman D. J., Moscow Conference on Computational Molecular Biology, Russie(2010), “Addressing scaling-out challenges for comparative genomics”

– P. Durrens, Conference “Comparative Genomics of Eukaryotic Microorganisms”, Sant Feliu, Espagne– D. Auber, Dagsthul 2013, Germany, Seminar 13151 “Drawing Graphs and Maps with curve”– D. Auber, Dagsthul 2013, Germany, Seminar 12261 “Putting Data on the Map”– G. Melançon, Dagsthul 2012, Germany, Seminar 13201 “Information Visualization - Towards MultivariateNetwork Visualization”

– D. Auber, Séminaire Dagsthul 2012, Germany, Seminar 11191 “Graph drawing with Algorithm EngineeringMethods”

– P. Thébault, Open Source Software for Systems, Pathways, Interactions and Networks (SPIN-OSS), theWellcome Trust Genome Campus, EBI, England, 2012

– M. Nikolski, Open Source Software for Systems, Pathways, Interactions and Networks (SPIN-OSS), theWellcome Trust Genome Campus, EBI, England, 2012

Research visits (national)– B. Pinaud : école polytechnique of the University of Nantes (since 2011), Master Erasmus-Mundus « DataMining and Knowledge Management » (DMKM)

– B. Pinaud : Université of Havre, 2011. Workshop on dynamic network



Industrial contracts– 2Moro RECORDS project– TDM RECORDS project– FEDD RECORDS project– Nexter RECORDS project– Thales RECORDS project– TurboMeca RECORDS project– Thales RECORDS project– EADS SocataRECORDS project– Airbus, SIMID project– Eurocopter, SIMID project– Dassault, SIMID project– Turbomeca, SIMID project– 2Moro, SIMID project– Vinci, SIMID project– Equip’Aero, SIMID project– Aerospace Valley, FUI projects– SARCO, division recherche l’entreprise LAFFORT– DRTS ltd, Grande Bretagne– INRIA France– i2CAT, Espagne– GAMCO, Espagne– VISup, Italie– Pikko Montpellier– Xerox Grenoble– Thales communication, Colombes– FIDAL, Nanterre– Tech4i2 Limited Royaume Uni– Stichting The Hub NL, Stichting Nederland Kennisland, Pays Bas– Factlink BV, Pays Bas– Euclid Network Limited by Guarantee, UK– Pianob S.L.n Espagne– Mozilla Foundation, USA– AT Internet– INA (Inst. Nat. Audio-Visuel), Paris, FR– QUCIT, Bordeaux, FR– Biogemma, FRContributions to professional journals and overview publicationsReports for decision makersContributions to standards– Hupo PSI (Protein Standards Initiative)– MIASE (Minimum Information About a Simulation Experiment)– MIAPAR (Minimum information about a protein affinity reagent)Collaborations outside of universitiesStart-ups

F.4. MABIOVIS 353


Learned society, federation (international)

Learned society, federation (national)

Scientific popularization, dissemination of scientific culture

Publications for large audience– Vice-Président A. Bordeaux Segalen 2008-2013, A. De Daruvar– Vice-Président A. Bordeaux 1, depuis 2012, S. Dulucq– Directeur de l’IUT Bordeaux 1, 2008-2012, S. Dulucq– Direction du LaBRI , 2007-2010, M. Delest– Direction du CBiB, 2010-, M. Nikolski– Direction du CBiB, 2001-2010, A. de Daruvar– Direction de l’Axe Stratégique Bioinformatique du SIRIC BRIO, M. Nikolski

F.5. PROGRAMMING, NETWORKS AND SYSTEMS 355

F.5 Programming, Networks and Systems



[RI1] H. Abdeen, S. Ducasse, D. Pollet, I. Alloui, and J.-R. Falleri, The package blueprint:visually analyzing and quantifying package dependencies, Science of Computer Programming, 89 (2014).

[RI2] Y. Abe, H. Sasaki, M. Peres, K. Inoue, K. Murakami, and S. Kato, Power and performanceanalysis of gpu-accelerated systems, USENIX, HotPower’12, (2012).

[RI3] A. Amraoui, B. Benmammar, F. Krief, and F. Bendimerad, Intelligent wireless communicationsystem using cognitive radio, International Journal of Distributed and Parallel Systems, 3 (2012), pp. 91–104.

[RI4] V. Autefage and D. Magoni, Virtualisation distribuée de réseaux dynamiques et mobiles avec nemu,REVUE DES NOUVELLES TECHNOLOGIES DE L’INFORMATION, RNTI-SM-2 (2013), pp. 19–38.

[RI5] B. Benmammar, A. Amraoui, and F. Krief, A survey on dynamic spectrum access techniques incognitive radio networks, International Journal of Communication Networks and Information Security(IJCNIS), 5 (2013), pp. 68–79.

[RI6] B. Benmammar, B. Benyahia, M. Benhamida, and F. Krief, Centralized dynamic spectrumaccess in cognitive radio networks based on cooperative and non-cooperative game, WSEAS Transactionson Communications, 13 (2014), pp. 148–161.

[RI7] T. F. Bissyandé, L. Réveillère, J. Lawall, Y.-D. Bromberg, and G. Muller, Implementingan embedded compiler using program transformation rules, Software: Practice and Experience, (2013),p. 1..20.

[RI8] T. F. Bissyandé, L. Réveillère, J. Lawall, and G. Muller, Ahead of time static analysisfor automatic generation of debugging interfaces to the linux kernel, Automated Software Engineering,(2014), pp. 1–39.

[RI9] L. Bouchard, J.-M. Berthelot, A. Casteigts, M. Chartier, A. Trugeon, and J. Warnke,Health and social information systems in support of local health planning: issues and challenges, GlobalHealth Promotion, 21 (2014), pp. 15–22.

[RI10] S. Boussen, J. Arnaud, F. Krief, N. Tabbane, and S. Tabbane, Iptv qos adaptation for multi-homed mobile terminals in a new ims based architecture, Telecommunication System Journal, (2013),p. 12.

[RI11] A. Bradai, U. Abbasi, R. Landa, and T. Ahmed, An efficient playout smoothing mechanism forlayered streaming in p2p networks, Peer-to-Peer Networking and Applications, Springer, (2012).

[RI12] A. Bradai, T. Ahmed, and A. Benslimane, Vicov: Efficient video streaming for cognitive radiovanet, Vehicular communication, Elsevier, (2014), pp. 1–18.

[RI13] A. Bradai, T. Ahmed, R. Boutaba, and R. Ahmed, Efficient content delivery scheme for layeredvideo streaming in large-scale networks, Journal of Network and Computer Applications, (2014), pp. 1–14.

[RI14] L. Burgy, L. Réveillère, J. Lawall, and G. Muller, Zebu: A language-based approach fornetwork protocol message processing, IEEE Transactions on Software Engineering, 37 (2011), pp. 575–591.


[RI15] A. Casteigts, J. Albert, S. Chaumette, A. Nayak, and I. Stojmenovic, Biconnecting anetwork of mobile robots using virtual angular forces, Computer Communications, 35 (2012), pp. 1038–1046.

[RI16] A. Casteigts, P. Flocchini, B. Mans, and N. Santoro, Measuring temporal lags in delay-tolerant networks, IEEE Transactions on Computers, 63 (2014), pp. 397–410.

[RI17] A. Casteigts, P. Flocchini, N. Santoro, and W. Quattrociocchi, Time-varying graphs anddynamic networks, International Journal of Parallel, Emergent and Distributed Systems, 27 (2012),pp. 387–408.

[RI18] A. Casteigts, A. Nayak, and I. Stojmenovic, Communication protocols for vehicular ad hocnetworks, Wireless Communications and Mobile Computing, 11 (2011), pp. 567–582.

[RI19] D. Cao, R. Castanet, P. Felix, and K. Chiew, An approach to automated runtime verificationfor timed systems: Applications to web services, JOURNAL OF SOFTWARE„ 7 (2014), pp. 1338–1350.

[RI20] C. Cassagnes, D. Magoni, H. Chang, W. Wang, and S. Jamin, Scalability and efficiency ofpush-driven p2ptv systems, Journal of Communications Software and Systems, 7 (2011), pp. 93–103.

[RI21] M. A. Chalouf, I. Djama, T. Ahmed, and F. Krief, An end-to-end qos and security joint man-agement for iptv service delivery, International Journal of Autonomous and Adaptive CommunicationsSystems, (2012), pp. 398–416.

[RI22] M. A. Chalouf and F. Krief, A secured service level negotiation in ubiquitous environments,International Journal of Communication Networks and Information Security, 1 (2009), pp. 9–18.

[RI23] M. A. Chalouf and F. Krief, A secured, automated, and dynamic end-to-end service level nego-tiation, Journal of Concurrency and Computation: Practice and Experience, 25 (2013), pp. 180–202.

[RI24] M. A. Chalouf, N. Mbarek, and F. Krief, Quality of service and security negotiation forautonomous management of next generation networks, International Journal of Network Protocols andAlgorithms, 3 (2011).

[RI25] S. Chaumette and D. Sauveron, Smart cards and remote computing: Interaction or convergence?,Information Security Technical Report, 14 (2009), pp. 101–110.

[RI26] O. Demigha, W. Hidouci, and T. Ahmed, On energy efficiency in collaborative target trackingin wireless sensor network: A review, IEEE Communications Surveys & Tutorials„ 15 (2012), pp. 1210– 1222.

[RI27] F. Djemili Tolba, D. Magoni, P. Lorenz, and W. Ajib, Energy-efficient power allocationalgorithms for mobile wireless sensor networks, International Journal of Sensor Networks, (2014), p. 11pp.

[RI28] R. Ducournau and F. Morandat, Perfect class hashing and numbering for object-oriented im-plementation, Software: Practice and Experience, 41 (2011), pp. 661–694.

[RI29] R. Ducournau and F. Morandat, Towards a full multiple-inheritance virtual machine, Journalof Object Technology, 11 (2012), p. 29.

[RI30] F. Duhem, F. Muller, W. Aubry, B. Le Gal, D. Negru, and P. Lorenzini, Design spaceexploration for partially reconfigurable architectures in real-time systems, Elsevier, 59 (2013), pp. 571–581.

[RI31] F. Duhem, F. Muller, W. Aubry, B. Le Gal, D. Négru, and P. Lorenzini, Design space ex-ploration for partially reconfigurable architectures in real-time systems, Journal of Systems Architecture,59 (2013), pp. 571–581.


[RI32] J.-R. Falleri, X. Blanc, R. Bendraou, M. Aurélio Almeida Da Silva, and C. Teyton,Incremental inconsistency detection with low memory overhead, Software: Practice and Experience, 44(2014), pp. 621–641.

[RI33] G. Gardikis, L. Boula, G. Xilouris, A. Kourtis, E. Pallis, M. Sidibé, and D. Negru,Cross-layer monitoring in iptv networks, IEEE Communications Magazine, 50 (2012), pp. 76 – 84.

[RI34] M. Grafl, C. Timmerer, H. Hellwagner, G. Gardikis, G. Xilouris, D. Renzi, S. Bat-tista, E. Borcoci, and D. Negru, Scalable media coding enabling content-aware networking, IEEEMultiMedia, 20 (2013), pp. 30–41.

[RI35] A. Jedda, A. Casteigts, G.-V. Jourdan, and H. Mouftah, Bluetooth scatternet formationfrom a time-efficiency perspective, Wireless Networks, 20 (2014), pp. 1133–1156.

[RI36] F. Krief, Y. Bennani, D. Gomes, and J. N. De Souza, Lecsom: a low-energy routing algo-rithm based on som clustering for static and mobile wireless sensor networks, International Journal onCommunications Antenna and Propagation, 1 (2011), pp. 55–63.

[RI37] J. Laval, S. Denier, S. Ducasse, and J.-R. Falleri, Supporting simultaneous versions forsoftware evolution assessment, Journal of Science of Computer Programming, (2010).

[RI38] J. Laval, J.-R. Falleri, P. Vismara, and S. Ducasse, Efficient retrieval and ranking of unde-sired package cycles in large software systems, Journal of Object Technology, 11 (2012).

[RI39] B. Mathieu, S. Ellouze, N. Schwan, D. Griffin, E. Mykoniati, T. Ahmed, and O. Rib-era Prats, Improving end-to-end qoe via close cooperation between applications and isps, IEEE Com-munications Magazine, 49 (2011), pp. 136 – 143.

[RI40] M. Mbaye and F. Krief, The knowledge plane in autonomic networks, International Transactionson Systems Science and Applications, (2009), pp. 69–92.

[RI41] S. Medjiah, T. Ahmed, and A. Asgari, Streaming multimedia over wmsns: an online multipathrouting protocol, International Journal of Sensor Networks, 11 (2012), pp. 10–21.

[RI42] S. Medjiah, T. Ahmed, and R. Boutaba, Avoiding quality bottlenecks in p2p adaptive streaming,IEEE Journal on Selected Areas in Communications, 32 (2014), pp. 734 – 745.

[RI43] S. Medjiah, T. Taleb, and T. Ahmed, Sailing over data mules in delay-tolerant networks, IEEETransactions on Wireless Communications, 13 (2014), pp. 5 – 13.

[RI44] D.-E. Meddour, A. Alaeddine, T. Ahmed, and R. Boutaba, A cross layer architecture for mul-ticast and unicast video transmission in mobile broadband networks, Journal of Network and ComputerApplications, 35 (2012), pp. 1377–1391.

[RI45] J. Mercadal, L. Réveillère, Y.-D. Bromberg, B. Le Gal, T. F. Bissyandé, andJ. Solanki, Zebra : Building efficient network message parsers for embedded systems, EmbeddedSystems Letters, PP (2012), pp. 1–4.

[RI46] Q. Minh Thao, D. Ouattara, F. Krief, H. Khalifé, and M. A. Chalouf, Overlap regionsand grey model-based approach for interference avoidance in cognitive radio networks, InternationalConference on Ubiquitous and Future Networks, IEEE ICUFN, (2013).

[RI47] M. Mushtaq and T. Ahmed, End-to-end qos provisioning for real-time video streaming over sp-driven p2p networks using admission control, Proc. of IEEE International Conference on Communica-tions (IEEE ICC 2009), (2009).

[RI48] D. Ouattara, F. Krief, M. A. Chalouf, and O. Hamdi, Amélioration de la phase de détectiondu spectre d’un système radio cognitive pour le suivi temps réel de patients, Nouvelles Technologies dela Répartition - Colloque francophone sur l’ingénierie des protocoles, NOTERE/CFIP, (2012).


[RI49] D. Ouattara, F. Krief, M. A. Chalouf, and O. Hamdi, Spectrum sensing improvement incognitive radio networks for real-time patients monitoring, International Conference on Wireless MobileCommunication and Healthcare, MobiHealth, (2012).

[RI50] D. Ouattara, F. Krief, M. A. Chalouf, and O. Hamdi, Un système de prédiction spectralepour une connectivité permanente dans le cadre du suivi en temps réel de patients, Revue des NouvellesTechnologies de l’Information, volume RNTI, (2013).

[RI51] D. Ouattara, Q. Minh Thao, F. Krief, M. A. Chalouf, and H. Khalifé, Mitigating the hos-pital area communication’s interference using cognitive radio networks, IEEE International Conferenceon e-Health Networking, Application & Services (IEEE Healthcom), (2013).

[RI52] C. Parra, X. Blanc, A. Cleve, and L. Duchien, Unifying design and runtime software adap-tation using aspect models, Science of Computer Programming, 76 (2011), pp. 1247–1260.

[RI53] T. Taleb, Y. Hadjadj-Aoul, and T. Ahmed, Challenges, opportunities, and solutions for con-verged satellite and terrestrial networks, IEEE Wireless Communications, 18 (2011), pp. 46 –52.

[RI54] T. Tiendrebeogo, D. Ahmat, and D. Magoni, Évaluation de la fiabilité d’une table de hachagedistribuée construite dans un plan hyperbolique, Technique et Science Informatiques, 33 (2014), pp. 311–341.

[RI55] T. Tiendrebeogo, D. Ahmat, D. Magoni, and O. Sié, Virtual connections in p2p overlayswith dht-based name to address resolution, International Journal On Advances in Internet Technology,5 (2012), pp. 11–25.


[RN1] M. A. Chalouf and F. Krief, Négociation de niveau de service dans les environnements ubiqui-taires, Studia Informatica Universalis, 8 (2010), pp. 1–24.

[RN2] F. Sailhan, Y.-D. Bromberg, and V. Issarny, Protocole de découverte de services interopérableen réseau ad hoc, Ingénierie des Systèmes d’Information, 14 (2009), p. 39.


[CHI1] J. Albert, L. Barrère, S. Chaumette, and D. Sauveron, Wireless sensors (lan-guages/programming/developments tools/examples), in Secure Smart Embedded Devices, Platforms andApplications, K. M. Konstantinos Markantonakis, ed., Springer New York, 2014, pp. 541–564.

[CHI2] T. F. Bissyandé, L. Réveillère, Y.-D. Bromberg, J. L. Lawall, and G. Muller, Bridgingthe gap between legacy services and web services, in Middleware 2010, I. G. C. Mascolo, ed., vol. 6452,Springer, 2010, pp. 273–292.

[CHI3] A. Casteigts, P. Flocchini, B. Mans, and N. Santoro, Deterministic computations in time-varying graphs: Broadcasting under unstructured mobility, in Theoretical Computer Science, C. S. C. V.Sassone, ed., vol. 323, Springer, 2010, pp. 111–124.

[CHI4] S. Chaumette and D. Sauveron, Wireless sensor nodes, in Secure Smart Embedded Devices,Platforms and Applications, K. M. Konstantinos Markantonakis, ed., Springer New York, 2014, pp. 335–350.

[CHI5] S. Ellouze, B. Mathieu, T. Ahmed, and N. Schwan, Collaboration between networks andapplications in the future internet, in Media Networks: Architectures, Applications, and Standards,S. Z. Hassnaa Moustafa, ed., CRC PRESS, 2012.

[CHI6] M. Grafl, C. Timmerer, H. Hellwagner, D. Negru, E. Borcoci, D. Renzi, A.-L. Mevel,and A. Chernilov, Scalable video coding in content-aware networks: Research challenges and openissues, in Trustworthy Internet, Springer, 2011, pp. 349–358.

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[CHI7] V. Issarny, A. Bennaceur, and Y.-D. Bromberg, Middleware-layer connector synthesis: Be-yond state of the art in middleware interoperability, in 11th International School on Formal Methodsfor the Design of Computer, Communication and Software Systems: Connectors for Eternal NetworkedSoftware Systems, M. Bernardo and V. Issarny, eds., vol. 6659, Springer, 2011, pp. 217–255.

[CHI8] H. Koumaras, D. Negru, E. Borcoci, V. Koumaras, K. Troulos, Y. Lapid, E. Pallis,M. Sidibé, A. Pinto, G. Gardikis, G. Xilouris, and C. Timmerer, Media ecosystems: A novelapproach for content-awareness in future networks, in The Future Internet Lecture Notes in ComputerScience Volume 6656, 2011, pp 369-380„ Springer, ed., Springer, 2011, pp. 369–380.

[CHI9] F. Krief, Self-management of ad hoc sensor networks, in Communicating Embedded Systems:Network Applications, ISTE and Wiley, 2010, p. 32.

[CHI10] F. Krief, M. Mbaye, and M. Peres, Autonomic green networks, in Green Networking, ISTEand Wiley, 2012, p. 36.

[CHI11] J. Lu, C. Dousson, B. Radier, and F. Krief, Towards an autonomic network architecture forself-healing in telecommunications networks, in Mechanisms for Autonomous Management of Networksand Services, B. S. F. Turck, ed., vol. 6155, Springer, 2010, pp. 110–113.

[CHI12] M. Mbaye and F. Krief, A collaborative knowledge plane for autonomic networks, in AutonomicCommunication, Springer Book, 2009, pp. 69–90.

[CHI13] D. Négru, Y. Hadjadj-Aoul, A. Mehaoua, and A. Kourtis, Ipv6 over dvb-t: Mobility is-sues, challenges, and enhancements, in Mobility Management and Quality-of-Service for HeterogeneousNetworks, D. D. Kouvatsos, ed., River Publishers, 2009, pp. 3–31.


[CHN1] X. Dolques, J.-R. Falleri, M. Huchard, C. Nebut, M. Rouane Hacene, andP. Valtchev, Le " refactoring " de systèmes logiciels : refactoring de modèles pour l’évolution per-fective., in Evolution et maintenance des systèmes logiciels., Hermès-science, 2014.

[CHN2] F. Krief, M. Mbaye, and M. Peres, Des réseaux green autonomes, in Le green networking :vers des réseaux efficaces en consommation énergétique, Hermes Science - Lavoisier, 2012, p. 30.


[DI1] F. Krief, Communicating Embedded Systems - Network Applications, ISTE and Wiley, 2010.

[DI2] F. Krief, Green Networking, ISTE and Wiley, 2012.


[DN1] F. Krief, Le green networking - Vers des réseaux efficaces en consommation énergétique, HermesScience - Lavoisier, 2012.

[DN2] F. Krief, Green Networking, China Machine Press, 2013.

[DN3] F. Krief, J.-M. Pierson, and P. Roose, Nouvelles Technologies de la Répartition - Ingénieriedes Protocoles : NOTERE 2012 / CFIP 2012, Cépaduès, 2012.


[II1] A. Bradai, T. Ahmed, and S. Medjiah, Qoe assessment for svc streaming in envision, in IEEE20th International Conference on Electronics, Circuits, and Systems (IEEE ICECS 2013), 2013.

[II2] A. Casteigts, Impact of network dynamics on the feasibility of distributed problems: an overview ofearly results, in XXI Jornadas de Concurrencia y Sistemas Distribuidos (JCSD), 2013.


[II3] Y. Chen and D. Négru, Toward the deployment of a new media ecosystem for future internet-basedcontent network, in International Conference on Telecommunications and Multimedia (TEMU 2010),2010.

[II4] M. Huchard, X. Dolques, J.-R. Falleri, and C. Nebut, On some complementary trends inmodel transformation generation, in FTMDD 2010 ICEIS 2010: 2nd International Workshop on FutureTrends of Model-Driven Development, 2010.


[CI1] U. Abbasi and T. Ahmed, Cooching: Cooperative prefetching strategy for p2p video-on-demandsystem, in Wired-Wireless Multimedia Networks and Services Management, vol. 5842/2009, 2009,pp. 195–200, 10.1007/978–3–642–04994–1_18.

[CI2] U. Abbasi and T. Ahmed, K-overlay: A kautz tree structure for video on demand system., in The10th IEEE International Symposium on Network Computing and Applications (IEEE NCA10), 2010,pp. 247 – 252.

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[CI126] D. Ouattara, F. Krief, M. A. Chalouf, and O. Hamdi, Spectrum sensing improvement incognitive radio networks for real-time patients monitoring, in Wireless Mobile Communication andHealthcare, Springer, ed., 2012, pp. 179–188.

[CI127] D. Ouattara, F. Krief, M. A. Chalouf, and O. Hamdi, Spectrum sensing improvement incognitive radio networks for real-time patients monitoring, in International Conference on WirelessMobile Communication and Healthcare, MobiHealth, 2012, pp. 179–188.

[CI128] D. Ouattara, M. Thao Quach, F. Krief, M. A. Chalouf, and H. Khalifé, Mitigatingthe hospital area communication’s interference using cognitive radio networks, in 2013 IEEE 15thInternational Conference on e-Health Networking, Applications and Services (Healthcom 2013), IEEE,ed., no. Print ISBN: 978-1-4673-5800-2, 2013.

[CI129] J. Ouoba and S. Chaumette, Multilevel and secure services in a fleet of mobile phones: Themultilevel secured messaging application (musma), in Mobile Computing, Applications, and Services,2012, pp. 169–185.

[CI130] J. Ouoba, S. Chaumette, D. Dubernet, E. Siira, and T. Tuikka, Architecture and com-parison of two different user-centric nfc-enabled event ticketing approaches, in Smart Spaces and NextGeneration Wired/Wireless Networking, 2011, pp. 165–177.

[CI131] J. Ouoba, S. Chaumette, D. Dubernet, E. Siira, and T. Tuikka, Architecture and evaluationof a user-centric nfc-enabled ticketing system for small events, in Mobile Computing, Applications, andServices, 2011, pp. 137–151.

[CI132] J. Ouoba, S. Chaumette, D. Dubernet, E. Siira, and T. Tuikka, Towards an interoperabilityevaluation process for mobile contactless city service, in Proceedings of ICDS 2014, 2014, pp. 65–70.

[CI133] M. Peres, Reverse engineering power management on nvidia gpus - anatomy of an autonomic-readysystem, in OSPERT 2013 Proceedings, 2013.

[CI134] M. Peres, M. A. Chalouf, and F. Krief, On optimizing energy consumption: An adaptative au-thentication level in wireless sensor networks, in Global Information Infrastructure Symposium (GIIS),2011, 2011.

[CI135] M. Peres, R. Perier, and F. Krief, Overcoming the deficiencies of collaborative detection ofspatially-correlated events in wsn, in Advanced Infocomm Technology, V. Guyot, ed., vol. 5th IEEE In-ternational Conference, ICAIT 2012, Paris, France, July 25-27, 2012. Revised Papers of 7593, SpringerBerlin Heidelberg, 2012.

[CI136] Y. Pigné, A. Casteigts, F. Guinand, and S. Chaumette, Construction et maintien d’uneforêt couvrante dans un réseau dynamique, in 12èmes Rencontres Francophones sur les Aspects Algo-rithmiques de Télécommunications (AlgoTel), M. G. P.-B. et Hervé Rivano, ed., 2010, p. 4 p.

[CI137] O. Portillo-Dominguez, M. Wang, D. Magoni, P. Perry, and J. Murphy, Load balancingof java applications by forecasting garbage collections, in 13th International Symposium on Paralleland Distributed Computing, 2014, p. 8 pp.

[CI138] O. Portillo-Dominguez, M. Wang, J. Murphy, and D. Magoni, Automated wait for cloud-based application testing, in IEEE 7th International Conference on Software Testing, Verification andValidation Workshops, 2014, pp. 370 – 375.


[CI139] O. Portillo-Dominguez, M. Wang, J. Murphy, D. Magoni, N. Mitchell, P. Sweeney,and E. Altman, Towards an automated approach to use expert systems in the performance testing ofdistributed systems, in 2nd International Workshop on Joining AcadeMiA and Industry Contributionsto Test Automation and Model-Based Testing, 2014, pp. 22–27.

[CI140] P. Rodrigues, S. Ait Chellouche, Y.-D. Bromberg, L. Réveillère, and D. Négru, Xtalk:A middleware for personalized service discovery in future internet, in 5th IEEE International Confer-ence on Telecommunications and Multimedia (TEMU), 2012, pp. 83–88.

[CI141] P. Rodrigues, S. Ait Chellouche, Y.-D. Bromberg, L. Réveillère, and D. Négru, Xtalk:A middleware for personalized service discovery in future internet, in Telecommunications and Multi-media (TEMU), 2012 International Conference on, 2012.

[CI142] P. Rodrigues, Y.-D. Bromberg, L. Réveillère, and D. Négru, Zigzag: a middleware forservice discovery in future internet, in 12th IFIP International Conference on Distributed Applicationsand Interoperable Systems, DisCoTec’12, 2012, pp. 208 – 221.

[CI143] P. Rodrigues, L. Réveillère, Y.-D. Bromberg, and D. Négru, Scalable and interoperableservice discovery for future internet, in Proceedings of the Third International Workshop on Middlewarefor Pervasive Mobile and Embedded Computing, M-MPAC ’11, 2011, pp. 3:1–3:7.

[CI144] N. Santoro, W. Quattrociocchi, P. Flocchini, A. Casteigts, and F. Amblard, Time-varying graphs and social network analysis: Temporal indicators and metrics, in Proc. of 3rd AISBSocial Networks and Multiagent Systems Symposium (SNAMAS), 2011, pp. 32–38.

[CI145] P. Senna, L. Réveillère, L. Jiang, D. Lo, J. Lawall, and G. Muller, Understanding thegenetic makeup of linux device drivers, in PLOS’13 - 7th Workshop on Programming Languages andOperating Systems, ACM, 2013.

[CI146] K. Shami, D. Magoni, H. Chang, W. Wang, and S. Jamin, Impacts of peer characteristicson p2ptv networks scalability, in 28th IEEE Conference on Computer Communications (INFOCOM),2009, pp. 2736–2740.

[CI147] J. Solanki, L. Réveillère, Y.-D. Bromberg, B. Le Gal, and T. F. Bissyandé, Improvingthe performance of message parsers for embedded systems, in ACM SAC 2013 Proceedings, vol. 2, 2013,p. 1505.

[CI148] C. Teyton, J.-R. Falleri, and X. Blanc, Mining library migration graphs, in Reverse Engi-neering (WCRE), 2012 19th Working Conference on, 2012, pp. 289–298.

[CI149] C. Teyton, J.-R. Falleri, and X. Blanc, Automatic discovery of function mappings betweensimilar libraries, in Reverse Engineering (WCRE), 2013 20th Working Conference on, IEEE, ed., 2013,pp. 192 – 201.

[CI150] C. Teyton, J.-R. Falleri, F. Morandat, and X. Blanc, Find your library experts, in ReverseEngineering (WCRE), 2013 20th Working Conference on, 2013, pp. 202–211.

[CI151] B. Tegawendé, L. Réveillère, and Y.-D. Bromberg, Ubigate: A gateway to transform dis-covery information into presence information, in UbiGate: A Gateway to Transform Discovery Infor-mation into Presence Information, 2009.

[CI152] M. Thao Quach, D. Ouattara, F. Krief, H. Khalifé, and M. A. Chalouf, Overlap regionsand grey model-based approach for interference avoidance in cognitive radio networks, in Ubiquitousand Future Networks (ICUFN)„ 2013, pp. 642 – 647.

[CI153] T. Tiendrebeogo, D. Ahmat, and D. Magoni, Reliable and scalable distributed hash tablesharnessing hyperbolic coordinates, in Proceedings of the 5th IFIP International Conference on NewTechnologies, Mobility and Security, 2012, pp. 1–6.


[CI154] T. Tiendrebeogo, D. Magoni, and O. Sié, Virtual internet connections over dynamic peer-to-peer overlay networks, in 3rd International Conference on Evolving Internet, 2011.

[CI155] K. Tomas, M. Petr, F. Morandat, and V. Jan, A fast abstract syntax tree interpreter for r,in Proceedings of the 10th ACM SIGPLAN/SIGOPS International Conference on Virtual ExecutionEnvironments, 2014, pp. 89–102.


[CN1] V. Autefage and D. Magoni, Nemu : un outil de virtualisation de réseaux à la demande pourl’enseignement, in JRES 10th, RENATER, ed., 2013.

[CN2] J. Briffaut, M. Peres, C. Toinard, J. Rouzaud-Cornabas, B. Venelle, and J. Solanki,Piga-os : Retour sur le système d’exploitation vainqueur du défi sécurité, in RenPar’20 / SympA’14 /CFSE 8, 8ème Conférence Francaise en Systèmes d’Exploitation, 2011.

[CN3] C. Cassagnes, D. Magoni, C. Hyunseok, and S. Jamin, Etude du passage à l’échelle d’unsystème pair-à-pair de diffusion télévisuelle, in 11èmes Journées Doctorales en Informatique et Réseaux,F. Giroire and D. Mazauric, eds., 2010.

[CN4] M. Gouyette, O. Barais, J. Le Noir, C. Brun, M. Almeida Da Silva, X. Blanc, D. Ex-ertier, and J.-M. Jézéquel, Movida studio: a modeling environment to create viewpoints and managevariability in views, in IDM- 7éme journées sur l’Ingénierie Dirigée par les Modèles-2011, I. Ober, ed.,vol. 1, service reprographie de Polytech, Université Lille I, 2011, pp. 141–145.

[CN5] O. Hamdi, M. Maissa, and F. Krief, Génération automatique de signatures par apprentissage pourles systèmes de détection d’intrusions, in 7ème Conférence sur la Sécurité des Architectures Réseaux etSystèmes d’Information, 2012, pp. 1–7.

[CN6] F. Morandat, R. Ducournau, and J. Privat, Évaluation de l’efficacité des implémentations del’héritage multiple en typage statique, in LMO’09 : Langages et Modèles à Objets, RNTI, ed., 2009,pp. 17–32.

[CN7] F. Morandat, R. Ducournau, and J. Privat, Evaluation de l’efficacité des implémentations del’héritage multiple en typage statique, in GPL’10: Journées du GDR Génie de la Programmation et duLogiciel, 2010, p. 15.

[CN8] D. Ouattara, F. Krief, M. A. Chalouf, and O. Hamdi, Amélioration de la phase de détectiondu spectre d’un système radio cognitive pour le suivi temps réel de patients, in Nouvelles Technologies dela Répartition - Colloque francophone sur l’ingénierie des protocoles, NOTERE/CFIP, 2012.


[SI1] A. Amraoui, F. Z. Benidris, B. Benmammar, F. Krief, and F. T. Bendimerad, Towardcognitive radio resource management based on multi-agent systems for improvement of real-time appli-cation performance, in Fifth IFIP International Conference on New Technologies, Mobility and Security(NTMS’2012), 2012.

[SI2] V. Autefage, S. Chaumette, and D. Magoni, Service discovery and session initiation in a highlydynamic swarm of unmanned vehicles, in 1st AETOS conference: Research challenges for future UAVsystems, 2012.

[SI3] W. Aubry, D. Négru, and P. Kadionik, Video adaptation acceleration in a home networkingcontext, in Colloque national du GDR SOC-SIP, 2009.

[SI4] S. Boussen, N. Tabbane, F. Krief, and S. Tabbane, A context aware vertical handover deci-sion approach based on fuzzy logic, in The fourth International Conference on Communications andNetworking, 2014, pp. 1–5.

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[SN1] V. Autefage, Un support d’acculturation à un domaine technologique - contrôle gestuel d’un essaimde drones., in Congrès de la Société Informatique de France 2014, 2014.

[SN2] J. Lu, C. Dousson, and F. Krief, Un algorithme distribué à base de graphe causal pour la fonc-tion d’auto-diagnostic des réseaux autonomes, in Congrès DNAC : De Nouvelles Architectures pour lesCommunications, 2011.

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[AI1] T. Ahmed, U. Abbasi, and S. Medjiah, Efficient iptv services delivery using svc adaptation andcooperative prefetching, IEEE ComSoc Multimedia Communications Technical Committee E-Letter,Special Issue on Mobile IPTV, 6 (2011), pp. 49–50.

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[AN1] F. Krief, Les systèmes embarqués communicants. Tutorial Journée technique Captronic, Lyon, 2009.

[AN2] F. Krief, Vers une gestion autonome. Tutorial, Sup’Com, Tunis, Tunisie, 2009.

[AN3] M. Mbaye and F. Krief, Apprentissage distribué et collaboratif de stratégies pour les réseauxautonomes. Poster présenté lors de la 9ème Conférence Internationale sur les NOuvelles TEchnologies dela REpartition (NOTERE 2009, 2009.

[AN4] D. Négru, Un Eco-système de Médias Réseaux basé sur la Conscience du Contexte, du Réseau et duContenu à destination de l’Internet Media du Futur, PhD thesis, Université Sciences et Technologies -Bordeaux I, 2013.

[AN5] D. Ouattara, Application de l’apprentissage aux réseaux radio cognitive. 2011.

Patents– ZeKMoP, ZeEro Knowledge MObile Phone. A software and NFC hardware system to keep informationsecure in a phone, thus making a total confidentiality thereof

Registered software– AirMod, confidential– Museum Quest, Offline NFC-based application to visit a museum augmented with an interactive quizz– Small Event Ticketing, Offline NFC-based ticketing management system– Visit Helsinky, Offline NFC-based application to visit a city– ZeKMoP, ZeEro Knowledge MObile Phone

Other software– Embedded software of CARUS project– FastR, a very fast Java implementation of R– GumTree, a source code differencing tool.– Harmony, a framework for software repository analysis– Diagnosys, a platform for automatically constructing a debugging interface for the Linux kernel– Starlink, a framework to support the execution of high-level protocol specifications– The JBotSim Library, a platform for prototyping distributed algorithms in dynamic networks– Z2Z, a platform for automatically generating network protocol gateways


– NEmu, a network emulator for mobile universes– Nemo, a network mobility engine for NEmu– VND, a virtual network device

Completed PhDs– Maïssa Mbaye, 17/12/2009, Les systèmes cognitifs dans les réseaux autonomes : une méthode d’apprentissagedistribué et collaboratif situé dans le plan de connaissance pour l’auto-adaptation

– Cyril Cassagnes, 12/11/2012, Architecture autonome et distribuée d’adressage et de routage pour la flexi-bilité des communications dans l’Internet

– Ahmat Daouda, 29/09/2014, Définition d’une infrastructure de sécurité et de mobilité pour les réseauxpair-à-pair recouvrants

– J. Arnaud, 17/12/2012, Gestion de mobilité efficace et contexte-dépendante dans les réseaux télécoms denouvelles générations

– M. Abbas BRADAI, 10/12/2012, Ordonnancement et Allocation de Bande Passante dans les Systèmes deStreaming Pair-à-Pair Multicouches

– M. HugoBOUJUT, 24/09/2012, Mesure sans référence de la qualité des vidéos hautes définition diffuséesavec des pertes de transmission

– M. Samir MEDJIAH, 10/12/2012, Optimisation des protocoles de routage dans les réseaux multi-sautssans fil à contraintes

– M. Yousri DALDOUL, 28/11/2013, Transport Multicast fiable de la vidéo sur le réseau WiFi– Aymen Chalouf, 3/12/2009, Offre de service dans les réseaux de nouvelle génération : Négociation sécuriséed’un niveau de service de bout en bout couvrant la qualité de service et la sécurité

– Moez Ben Mbarka, 6/04/2011, Signatures électroniques avancées : modélisation de la validation à longterme et sécurité des autorités de certification

– Jingxian Lu, 19/12/2011, L’auto-diagnostic dans les réseaux autonomes : application à la supervision deservices multimédia sur réseau IP de nouvelle génération

– Preston Rodrigues, 27/05/2013, Interoperabilité à large échelle dans le contexte de l’Internet du futur– S. Ait Chellouche, 09/12/2011, Délivrance de services médias suivant le contexte au sein d’environnementshétérogènes pour les réseaux médias du futur

–W. Aubry, 19/12/2012, Conception en co-design logiciel/matériel d’une plateforme reconfigurable d’adaptationvidéo pour les réseaux du futur

– Tégawendé Bissyandé, 12/03/2013, Contributions à l’Amélioration du Debogage des Services Noyau dansun Système d’Exploitation Monolithique

– Jonathan Ouoba, 11/12/2013, Etude, conception et validation d’une architecture multi-niveaux mobile àbase de terminaux communicants, sécurisés par cartes à puce

– Rémi Laplace, 20/12/2012, Applications et Services DTN pour flotte collaborative de drones– W. Cherif, 19/06/2013, Adaptation de contexte basée sur la Qualité d’Expérience dans les réseaux Internetdu futur. University of Rennes 1

including cotutelle PhDs (international)– Telesphore Tiendrebeogo, 24/06/2013, Système dynamique et réparti de nommage à indirections multiplespour les communications dans l’Internet, Université de Ouagadougou, Burkina Faso

Completed habilitations– Daniel Négru, 5/12/2013, A Networked Media Ecosystem based on *-awareness for Future Media Internet

– Laurent Réveillère, 15/11/2011, Développement de systèmes distribués efficaces: une approche fondée surles langages métiers



Steering committee (international)– Aetos– CARDIS– WISTP

Steering committee (national)– ComPAS

Program committee (international)– 2013 QoS-QoE Workshop– ACC-2011– ADHOCNOW 2009, 2013– AETOS-RCFRUS 2014– APWiMob 2014– AyurInfo-2014– CAMAD 2008, 2009, 2010, 2011, 2012, 2013, 2014– CSE 2009– CSMR 2012, 2013, 2014– DAIS 2012– ECMFA 2010, 2011, 2012, 2013– GC 09 AHSN, 09 CISS, 09 WNS, 11 AHSN, 11 CQRM, 11 WN– GLOBECOM 2009 WNS, 2010 WNS, 2010 AHSN, 2010 - SAC, 2010 - WN, 2011 CQRM, 2013 CQRM,2012 AHSN, 2012 CISS, 2012 WN, 2013 AHSN, 2013 CQRM, 2013 CogRN, 2013 WN, 2014 AHSN, 2014CogRN, 2014 WN

– GIIS 2012, 2013, 2014– ICAS 2009– ICC 09 CISS, 09 SAC, 09 WN, 10 SAS, 10 WNS, 11 AHSM, 11 CISS, 11 CSMA, 11 WNS, 12 AHSN, 12CSSMA, 12 WN, 13 AHSN, 13 CSS, 13 WN, 14 AHSN, 14 MWN, 15 (03) MWN, 15 (08) CQRM

– ICCC’12 - CQR– ICCCN 2011, 2013 (NAPE)– ICCVE 2012, 2013– ICMR 2012– ICNC’12 - WN, 13 - WN, 14 - WN, 15 - WN– ICOOOLPS (ECOOP Workshop) 2013, 2014– IEEE EUSIPCO 2012 (MDCAN Special Session)– IEEE Healthcom 2013, 2014– IEEE ICECS 2011 (VOTN special session)– IEEE ICME 2011 (WOMAN Workshop)– IEEE JSAC AMS– IEEE MASS 2013– IEEE TEMU 2010, 2012, 2014– IEEE WCNC 2011 - Network– IEEE WCNC 2011 - Service and Application– IEEE WCNC 2012 Track 3 Mobile & Wireless– IEEE WCNC 2012 Track 4 SAB


– IEEE WCNC 2012– IEEE WCNC 2013– IEEE WCNC 2013 - NETWORKS– IEEE WCNC 2015 - Track 3- Mobile and Wireless Networks– IEEE WCNC’14 Track 3 : NET– IMAGINE 2009– INFOCOM’2014 Workshop on Mobile Cloud Computing– ISWCS’2014 - Track 2-– IUCC 2011– IWCMC 2009 Multimedia over Wireless Symposium– IWCMC 2014 Wireless Net Symposium– InVeNET 2009– LOCALGOS 2009, 2010– MoWNet’2013– MoWNet’2014– Models 2011, 2012, 2013, 2014– PIMRC 2008 Networks Track– PIMRC’09– PIMRC’11 - LPAN– PIMRC2012-NET– ICSM 2013– ICSME 2014– ICSOFT-PT 2014– UWCSN-2014– UWCSN-2014– W5 - Wireless Vehicular Communications and Networks– WCSP’13– WD’11– WISe 2009– WWASN 2009– iCOST’2011– iCOST’2012– ACC 2011– ACM Symposium on Applied Computing from 2010 to 2014– ADVCOMP 2012– AHSN 2013– AICT 2011, 2012, 2013– ANT 2014– AQTR 2010– CSSM 2012, 2013– ComNet 2014– DANMS 2011– DICTAP 2011– ECUMN 2009– GIIS 2009, 2012, 2013– GRES 2010– ICCVE 2012, 2013


– ICDCS 2012– ICN 2011, 2012, 2013, 2014– ICNS 2013, 2014– ICT 2009– ICWUS 2010– GLOBECOM 2007, 2008, 2009, 2010, 2011, 2012, 2013– ICC 2008, 2009, 2010– PIMRC 2013– e-HPWAS 2014– NTMS 2011– AITM 2012 to 2014– CNSR 2009– ICCVE 2013, 2014– INTERNET 2012, 2013– INCoS 2012– ICN 2009, 2010, 2011, 2012, 2013, 2014– ISCI 2013– ISMW 2009– ISWTA 2012– IWCMC 2009– IWCNC 2009– MACE 2009, 2010– MMNS 2009– NTMS 2009, 2012– PLOS 2009– RIVF 2009, 2010, 2012– SIEC 2010, 20111– SMART 2013– SaCoNet 2013, 2014– SaCoNet-III 2012– TEMU 2012– Ubi-HealthTech 2013– WMNC 2009, 2010, 2011, 2012, 2013, 2014– WTS 2009, 2012– WWIC 2014– WiSe 2009, 2010, 2011, 2012– WoMAN 2011, 2012– eHPWAS 2013

Program committee (national)– CFIP 2011– CFSE 2009, 2011– ComPAS 2013, 2014– DNAC 2009, 2010, 2011, 2012– GRES 2010– NOTERE/CFIP 2012

Presidence of program committee (national)


– ComPAS 2013– NOTERE/CFIP 2012– Future Tech

Organizing committee (conferences, seminaries, schools...) (international)– Aetos, 2012– PERSEUS Summer School 2012, 2013, 2014, Crete, Greece– Ecoop’13 Student Volunteer Chair, Montpellier, France– Splash Demo Chair 2013, 2014– International conference EuroSys, Paris France, 2010

Organizing committee (conferences, seminaries, schools...) (national)– Journée scientifique IPB 2011, 2012, 2013– International conference Middleware, Beijing, China, 2013– RESCOM 2011– Creation of a series of short seminaries called the “Café papier”, at LaBRI.

Presidence of organizing committee (international)– Special issue drones– IJCDS, 2013– IJCNIS, 2009– IJCSA, 2013– IJDPS, 2012– IJRRCS, 2010– Hindawi International Journal of Digital Multimedia Broadcasting (IJDMB), special issue on “IP andBroadcasting Systems Convergence”, 2010

– Hindawi Journal of Computer Networks and Communications, special issue on “Advanced Techniques forMultimedia Delivery in Collaborative Networks”, 2012


Research animation (international)– Member of IFIP 2.11 working group

Research animation (national)– ALLISTENE, 2009-2011– Member of GDR ASR, Pôle Système– Member of GDR GPL– Honorary Chairman of ACM Sigops France


Presidence of expert committee (international)– Netherlands Organisation for Scientific Research (NWO)

Presidence of expert committee (national)– Chair of commission 6, CCRRDT du Conseil Regional Aquitaine, 2011-2014

Membership in expert committee (international)– European and International Cooperation Project Management Agency since 2009– H2020 EU Framework Programme for Research and Innovation since 2013

Membership in expert committee (national)– ANR Blanc 2009


– ANR Blanc International 2011– ANR CES 28, 2014– ANR Réseaux du Futur et Services, 2009– ANR SIMI2, 2011– ANR SIMI2, 2012– ANR SIMI2, 2013– ANR VERSO, 2009– ANR VERSO, 2010– ANR appel générique, 2014– ANR INS, 2013– ANR Emergence, 2012– ANR Blanc, 2011– Allocation of doctoral research, UTC, 2010– Allocation of doctoral research, Université Paris 13, 2010– Allocation of doctoral research, Université Paris Descartes, 2010– CIFRE, 2012, 2014– Crédit impôt recherche, 2013-2014– DIM AAP 2010– Stic Amsud 2010– Expertise AERES en 2012

Individual expert (reviewer) (international)– Qatar National Research Fund (QNRF) depuis Nov. 2011– CRSNG 2010, 2011, 2012, 2013– Portuguese Foundation for Science adn Technology, 2010

Presidence of selection board– Chairwoman of the selection committee for a Prof. position at Université Paris Descartes, 2009– Chairwoman of the selection committee for an Associate Prof. position at UTC, 2012– Chairwoman of the selection committee for an Associate Prof. position at Université Paris Descartes, 2012

Membership in selection board– Prof. position at IPB, 2012, 2013– Prof. position at Université Paris Descartes, 2012– Prof. position at IRISA/Université de Bretagne SUD, 2014– Associate Prof. position at ENSEIRB-MATMECA, 2009, 2010– Associate Prof. position at ESIREM, 2014– Associate Prof. position at Institut Polytechnique de Bordeaux (IPB), 2010, 2011– Associate Prof. position at IUT Bayonne, 2010– Associate Prof. position at IUT Bordeaux, 2012– Associate Prof. position at IUT Pays de l’Adour, 2013– Associate Prof. position at IUT Vitry, 2014– Associate Prof. position at University of Versailles St Quentin, 2012– Associate Prof. position at Université Paris Descartes, 2009, 2010– Associate Prof. position at Université Toulouse, 2009, 2010, 2014– Associate Prof. position at Université de Lille, 2012– Associate Prof. position at Université of Grenoble, 2011– Associate Prof. position at Université of Rennes 1 in 2011, 2013– Associate Prof. position at Mines de Nancy in 2013


– Associate Prof. position at IUT de Bordeaux 1 in 2012– Associate Prof. position at IUT de Lannion in 2011, 2012– Associate Prof. position at UPMC/LIP6 in 2014– Position Atos/Renault at UPMC in 2012– Associate Prof. position at Université de Limoges, 2014

Membership in prize jury– Concours ConceptDrones– Prix Isabelle Attali

Reviewing of PhD or habilitation (international)– PhD thesis of Julien Schleich, University of Luxembourg, Luxembourg, 2010– PhD thesis of Xuefei Leng, Smart Card Centre, Information Security Group, Royal Holloway, Universityof London, London, UK, 2010

– PhD thesis of Golam Sarwar, The University of New South Wales | UNSW SYDNEY– PhD thesis of F Ghandour, SupCom, 2012– PhD thesis of L Maalej Frikha, SupCom, 2009– PhD thesis of Jorge PUISSANT, Mons University, 2012– PhD thesis of Matthieu GOEMINE, Mons University, 2013– PhD thesis of Pedro Inacio, University of Beira Interior, 2009– PhD thesis of Gilles Dubochet, EPFL, 2011

Reviewing of PhD or habilitation (national)– HDR of Leila Merghem-Boulahia, UTT, 2010– HDR of Mohamed Bakhouya, Université de Haute Alsace, 2013– HDR of Nicolas Larrieu, Université Toulouse, 2014– HDR of Selma Boumerdassi, UPMC, 2010– HDR of Adlen Ksentini– HDR of Olivier LY, 2012– HDR of Yacine Rebahi (Université de Haute Alsace - Fraunhofer Fokus, Berlin) 2012– HDR of Helene Waeselynck, INPT-LAAS, 2011– HDR of Sebastien SALVA, Université Clermont-Ferrand, 2012– HDR of Stephane MAAG, Université Evry, 2011– HDR of Yves Mahéo, Laboratoire Valoria, Université de Bretagne Sud / Université Européenne de Bre-tagne, 2011

– PhD thesis of A. Aroumont, INP Toulouse, 2010– PhD thesis of A. Hammami, Telecom ParisTech & UPMC, 2013– PhD thesis of Abderrahim Makhlouf, Université Paris 6, 2009– PhD thesis of Abdul Razzaq , directeur Ahmed Mehoua, 2011– PhD thesis of Ahmed Akl , directeurs Thierry GAYRAUD et Pascal BERTHOU, 2011– PhD thesis of Ahmed Riadh REBAI , directeur M. Christophe Wilbaut et Saïd Hanafi, 2009– PhD thesis of Alexandra NICULAE , directeur André-Luc Beylot, 2009– PhD thesis of Amir Djouama , directeur Samir Tohmé, 2010– PhD thesis of Amélie Medem, Université Paris 6, 2011– PhD thesis of Arnaud Kaiser, University Paris 13, 2011– PhD thesis of Asma CHARFI SMAOUI, 2011– PhD thesis of Assia Hamzaoui, Université Paris 6, 2011– PhD thesis of B. Jacquemin, Université Toulouse, 2010– PhD thesis of B. Vidalenc, Telecom SudParis & UPMC, 2012


– PhD thesis of C. Hounkonnou, Université Rennes, 2013– PhD thesis of Carlos GIRALDO RODRIGUEZ, 2011– PhD thesis of Christophe Kiennert, Télécom ParisTech, 2012– PhD thesis of Constantinos Makassikis, Loria/Supélec, Université Henry Poincaré - Nancy 1, Metz, 2011– PhD thesis of David Pradas , directeur Michel Bousquet, 2011– PhD thesis of Dominique PICHON , directeur Xavier Lagrange, 2010– PhD thesis of E. Amar, UPMC, 2011– PhD thesis of E. Trigui, UTT, 2013– PhD thesis of EL Hadji Diop, 2014– PhD thesis of F. Nivor, Université Toulouse, 2009– PhD thesis of Fabier CADORET, 2014– PhD thesis of H. Slimani, Université Toulouse, 2013– PhD thesis of Houssein Wehbe, 2011– PhD thesis of I. Boulanouar, Université Paris-Est, 2014– PhD thesis of I. Elloumi, Université Toulouse, 2012– PhD thesis of I. Houidi, UPMC, 2010– PhD thesis of Ihsan Ullah, 2011– PhD thesis of Intesab Hussain, 2013– PhD thesis of Iuniana Oprescu, Université Toulouse 3, 2012– PhD thesis of J. Boite, UTT, 2012– PhD thesis of J. Petit, Université Toulouse, 2011– PhD thesis of J. Rouzaud-Cornabas, Université Orléans, 2010– PhD thesis of J. Siebert, Université Nancy, 2011– PhD thesis of Jingwei Miao, LIRIS Lyon, 2013– PhD thesis of Jose Pablo Escobedo Del Cid, Université Evry, 2010– PhD thesis of Karel Heurtefeux, 2009– PhD thesis of L. Akue, Université Toulouse, 2014– PhD thesis of M. Loukil, Telecom SudParis & UPMC, 2012– PhD thesis of M. Nafaa, Université d’Evry Val d’Essonne, 2009– PhD thesis of M. Sidibé, Université de Versailles Saint-Quentin En Yvelines, 2010– PhD thesis of Majd Ghareeb, 2011– PhD thesis of Marco BRAMBILLA, 2013– PhD thesis of Minh Tuan HO, Université Rennes 1, 2013– PhD thesis of Mohamed el Amine Brahmia, 2012– PhD thesis of Monia Hamdi, 2012– PhD thesis of Mounir Lalalli, Université Evry, 2009– PhD thesis of Muhammad Anis, Telecom Bretagne, 2013– PhD thesis of N. Kobeissy, UPMC, 2009– PhD thesis of N. Matta, UTT, 2014– PhD thesis of N. Tao, INP Toulouse, 2009– PhD thesis of Nanxing CHEN, Université Rennes 1, 2013– PhD thesis of Patrice Raveneau, IRIT Toulouse, 2014– PhD thesis of S. Kessal Ouanouche, Telecom ParisTech & UPMC, 2011– PhD thesis of S. Natouri, Telecom ParisTech & UPMC, 2014– PhD thesis of Selim Ellouze, Université Rennes 1, 2013– PhD thesis of Simon Delamare, Télécom ParisTech, 2010– PhD thesis of Suman Saha, LIP6/INRIA, 2013


– PhD thesis of Sylvain Genevès, Lig Grenoble, 2013– PhD thesis of Sébastien MOSSER, 2010– PhD thesis of Thomas Bourgeau, Université Paris 6, 2013– PhD thesis of Tuan Tran Thai, ISAE Toulouse, 2014– PhD thesis of W. Werapun, INP Toulouse, 2012– PhD thesis of Wassim Ramadan, 2011– PhD thesis of Yaning Liu, Université Rennes 1, 2011– PhD thesis of Yosra Barouni, Université Paris 6, 2011– PhD thesis of Yves Gael Billet, 2012– PhD thesis of Z. Movahedi, UPMC, 2011– PhD thesis of Z. Sarra Ben Oubira, 2012– PhD thesis of Z. Tarek BCHINI, 2010– PhD thesis of Zheng HU, Lyon/Grenoble, 2014

Membership of PhD/habilitation committee (national)– HDR of Lilian Bossuet, Laboratoire IMS, Université de Bordeaux– HDR of Daniel Negru, Université Bordeaux, 2013– HDR of Laurent Réveillère, Université Bordeaux, 2011– PhD thesis of Céline Thuillet, LaBRI, Univ. Bordeaux 1, 2012– PhD thesis of Dorice Diane Nyamy, Télécom ParisTech, 2012– PhD thesis of Henner Jakob, LaBRI, Université de Bordeaux, 2011– PhD thesis of Yulong FU, Université Pau et Pays Adour, 2014– PhD thesis of A. Achour, UPMC, 2012– PhD thesis of A. B. Bagayoko, INP Toulouse, 2012– PhD thesis of A. Bessaoud, UPMC, 2011– PhD thesis of C. Ghedira, Telecom SudParis & UPMC, 2011– PhD thesis of G. Boudour, Université Toulouse, 2010– PhD thesis of I. Jemili, Université Bordeaux, 2009– PhD thesis of I. Tou, Université Toulouse, 2012– PhD thesis of L. Lei, ISAE & Université Toulouse, 2009– PhD thesis of L. Zhang, Université Toulouse, 2009– PhD thesis of M. Cheaito, Université Toulouse, 2012– PhD thesis of R. Makhloufi, UTT, 2012– PhD thesis of R. Nassar, Telecom ParisTech & UPMC, 2012– PhD thesis of S. El Moumouhi, UPMC, 2012– PhD thesis of U. Mir, UTT, 2011– PhD thesis of W. Bechkit, UTC, 2012– PhD thesis of Abbas Bradai, Université Bordeaux 1, 12/2012– PhD thesis of Amel Bennaceur, 2013– PhD thesis of Christine Louberry, 2010– PhD thesis of J. Arnaud, University of Bordeaux, December 2012– PhD thesis of M. Carlos Parra, 2011– PhD thesis of M. Damien Cassou, 2011– PhD thesis of M. Ibrahima FALL, 2013– PhD thesis of M. Julien Mercadal, 2011– PhD thesis of M. Tegawendé F. Bissyande, 2013– PhD thesis of M. Xavier Dolques, 2010– PhD thesis of M. Youssef Ridene, 2011


– PhD thesis of Asma Riai, 2014– PhD thesis of N. Nouri, Université de Nancy, Septembre 2011– PhD thesis of M. Olivier Sallenave, Décembre 2012– PhD thesis of P. Rodrigues, University of Bordeaux, May 2013– PhD thesis of Simon Duquennoy, Université de Lille 1, 2010– PhD thesis of Soraya Ait-Chellouche, University of Bordeaux, December 2011– PhD thesis of Ubaid Abbasi, Université Bordeaux 1, 04/2012– PhD thesis of W. Aubry, University of Bordeaux, December 2012– PhD thesis of W. Cherif, University of Rennes 1, June 2013– PhD thesis of Yiping Chen, Université Rennes 1, 09/2010


Projects (international)– ITEA2, Smart Urban Spaces– European Project : ALICANTE (Media Ecosystem Deployment through Ubiquitous Content-Aware Net-work Environments – http://www.ict-alicante.eu), FP7 ICT Integrated Project (IP). Cooperation with 20partners (industries & academia)

– European Project : DISEDAN (service and user-based DIstributed SElection of content streaming sourceand Dual AdaptatioN - http://wp2.tele.pw.edu.pl/disedan/), CHIST-ERA program. Cooperation with theNational Institute of Telecommunications, Warsaw, Poland and the University Politechnic of Bucharest,Romania

Projects (national)– ANR, ARDMAHN– ANR, DAISIE– ANR, INFRA JVM, 2012-2015– ANR, DIAFORUS, 2008-2012– ANR, LICoRNe, 2011-2014– BQR CAPE 2010– BQR Bordeaux 1, 2009– BQR Enseirb, 2009– BQR Enseirb, 2010– CNRS-RA SR2D, 2009-2013– Chameleon, Région Aquitaine, 2010-2013– Evolog, Région Aquitaine, 2012-2015– Harmony, Région Aquitaine, 2011-2014– JIP ICET 2, Asimut– LSD, Université of Bordeaux, 2014

Joint publications (international)– Ahmed Jedda, Ottawa, Canada– Amiya Nayak, Ottawa, Canada– Bernard Mans, Sydney, Australia– Guy-Vincent Jourdan, Ottawa, Canada– Hussein Mouftah, Ottawa, Canada– Ivan Stojmenovic, Ottawa, Canada– Jean-Marie Berthelot, Ottawa, Canada– Joseph Peters, Vancouver, Canada


– Louise Bouchard, Ottawa, Canada– Marie-Hélène Chomienne, Ottawa, Canada– Masafumi Yamashita, Fukuoka, Japan– Nicola Santoro, Ottawa, Canada– Paola Flocchini, Ottawa, Canada– Walter Quattrociocchi, Boston, USA– University Polytechnic of Bucharest, Romania (ET team) - 10 publications– University of Klagenfurt, Austria (MMC-ITEC team) - 6 publications– José Neuman De Souza, Prof. at Federal University of Ceará, Brazil– Maïssa Mbaye, Associate Prof. at Université Saint-Louis, Sénégal– Sami Tabbane, Prof. at SupCom, Tunisie– Univeristy of Luxembourg, Jacques Klein and Yves Le Traon, Luxembourg - 1 publication– Singapour Managment University (David Lo and Lingxiao Jiang), Singapour - 5 publications– Lancaster (Gordon Blair and Paul Grace), United Kingdom - 3 publications– Lancaster (Gordon Blair and Paul Grace), United Kingdom - 3 publications– NIT lab, Warsaw, Poland - 3 publications– PASIPHAE lab, Crete, Greece - 8 publications– Purdue University (Jan Vitek, Tomas Kalibera), US (IN) - 1 publication

Joint publications (national)– Afonso Ferreira, Nice, France– Badr Benmammar, Associate Prof. at Université Tlemcen, Algérie– IMS lab, Bordeaux, France (COFI team) - 5 publications– IRISA lab, Rennes (INRIA-Dionysos team) - 4 publications– LEAT lab, University of Nice - 1 publication– Thomson Grass Valley/Thomson Video Networks, Rennes - 6 publications– Viotech Communications, Paris - 11 publications– Emmanuel Godard, Marseille, France– Frédéric Amblard, Toulouse, France– Frédéric Guinand, Le Havre, France– Mohamed Aymen Chalouf, Associate Prof. at IUT Lannion– Nader Mbarek, Associate Prof. at ESIREM– University College Dublin - School of CSI - PEL– Yoann Pigné, Le Havre, France– INRIA/LIP6 (Julia Lawall, Gilles Muller and Gaël Thomas), Paris, France - 10 publications– Bertrand Le Gal, IMS, Bordeaux, 2 publications, France– LIP6 (Gaël Thomas), Paris, France - 1 publication– CNAM/CEDRIC (Françoise Sailhan), Paris, France - 1 publication– INRIA/LIP6 (Reda Bendraou), Paris, France - 1 publications– INRIA (Stéphane Ducasse), Lille, France - 2 publications– LIRMM (Marianne Huchard), Montpellier, France - 1 publications

Other collaborations (international)– Ahmed Karmouch, Prof. at University of Ottawa

Research visitors (international)– Carlos Gomez-Calzado, San Sebastian, Spain, 3 months in 2014– Paul Grace, University of Lancaster, United Kingdom1 month, 2010– Paul Grace, University of Lancaster, United Kingdom1 month, 2011


– Paul Grace, University of Lancaster, United Kingdom, 1 month, 2012– David Lo, SMU, Singapor, 1 week, 2013

Research visitors (national)– Di Cosmo, 2014– Gaël Thomas, associate prof., Paris, 2 weeks, 2010– Johann Bourcier, associate prof., Rennes, 1 month, 2013– José Neuman De Souza, 2010– Mons University, Tom Mens, 2011– Sonia Ben Mokhtar, CR CNRS Lyon, 2010– Sonia Ben Mokhtar, CR CNRS Lyon, 2012– Floréal Morandat, Post-doc from Purdue University, Feb. 2012– Jean Privat, UQAM, June 2013– Vivien Quéma, associate prof., Grenoble, 2 weeks, 2010– D. Sauveron, Univ. de Limoges

Research visits (international)– Indian Statistical Institute, Kolkata (India), 2 weeks in 2014– Macquarie University, Sydney (Australia), 5 weeks in 2011– Simon Fraser University, Vancouver (Canada), 1 week in 2011– SMU, Singapor, 2 weeks, 2013– SMU, Singapor, 2 weeks, 2014

Research visits (national)– BUAA, Chine, 2013– DIKU, Danemark, 2 weeks, 2009– DIKU, Danemark, 2 weeks, 2009– Dagsthul Seminar ”Automated Reasoning on Conceptual Schemas”, May 2014– Dagsthul Seminar ”Cloud-based Software Crowdsourcing”, September 2014– Grenoble, INRIA project team SARDES, 2 months, 2011– Grenoble, LIG team ERODS, 1 week, 2013– Lancaster, INFOLAB21 team, 2 weeks, 2012– Rocqencourt, INRIA project team ARLES, 1 week, 2011– Université du Havre, 1 week, 2009– Université du Havre, 1 week, 2014– Marel Team, LIRMM, 2013


Industrial contracts– AirMod– PhD Cifre, AKKA, 2014-2016– PhD Cifre, Cryptolog, 2008-2011– Industrial project Sogeti-LaBRI : Multibox (Composing Networked Multimedia Services and deploymentof a Demonstration Platform under Mobile Systems), within the Sogeti-LaBRI partnership; 2011-2012

– Industrial project Thomson-LaBRI : Convergence IMS (Convergence of services for heterogeneous en-vironments in Next Generation IMS Networks), research contract with Thomson Grass Valley, Rennes;2008-2011


Contributions to professional journals and overview publications– Systèmes d’information sociosanitaire à l’appui de la planification locale de la santé: défis et enjeux. InGlobal Health Promotion, Vol. 21, Issue 1, 15-22, 2014

Reports for decision makers– Deterministic Algorithms in Dynamic Networks: Formal Models and Metrics. Commissioned report forDefense Research and Development Canada (DRDC). 82 pages, 2013.

– Deterministic Algorithms in Dynamic Networks: Problems, Analysis, and Algorithmic Tools. Commis-sioned report for Defense Research and Development Canada (DRDC). 92 pages, 2013.

– Reports for commission veille et prospective du Conseil Econonomique Social et Environnemental Regional,6 reports 2011-2013

Collaborations outside of universities– DGA– Deev Interactions– Fly-n-Sense– Gemalto– Groupe CEV– NXP– Thales– US Military Academy West Point– Hôpital Montfort, Ottawa, Canada– Irdeto Canada, Ottawa, Canada– Thales

Start-ups– NFC-Interactive, 2014


Scientific popularization, dissemination of scientific culture– Captronic, Lyon, juin 2009– LIFO, Orleans, mars 2012– SupCom, mars 2009– CEBIT Exhibition 2012, 2013: one of Europe’s biggest event in IT business. Poster presentation anddemonstrations

– CES (Consumer Electronics Show) 2013, 2014: world’s biggest event in Consumer Electronics. Posterpresentation and demonstrations

– Fete de la Science, Bordeaux 2012, 2013. Demonstrations to young students

F.5.4 Misc– Director of the IPB/ENSEIRB-MATMECA Networking and Information Systems Department (teachingdpt.), since 2009

– Member of the Enseirb-Matmeca research board, 2013– Member of the IPB Teaching Board, since 2013– Member of the IPB/ENSEIRB-MATMECA Board, since 2004– Member of the LaBRI laboratory board (3 members)– Member of the LaBRI laboratory committee selection board (2 members)– Member of the IPB research board, 2010-2014– Member of the UFR Maths-Info board, 2009-2010


– Member of the Bordeaux Science Agro research board, 2012-2014– Member of the LIFO research board, 2012-2014– Member of the LaBRI laboratory research board (5 members)– Member of the GIS Albatros board

F.6. SATANAS 387

F.6 Supports and Algorithms for High Performance NumericalApplications



[RI1] R. Abdelkhalek, H. Calandra, O. Coulaud, G. Latu, and J. Roman, Fast seismic model-ing and reverse time migration on a graphics processing unit cluster, Concurrency and Computation:Practice and Experience, 24 (2012), pp. 739–750.

[RI2] R. Abgrall, P. Ramet, and R. Huart, Numerical simulation of unsteady mhd flows and applica-tions, MagnetoHydroDynamics Journal, 45 (2009), pp. 225–232.

[RI3] E. Agullo, B. Bramas, O. Coulaud, E. Darve, M. Messner, and T. Takahashi, Task-basedfmm for multicore architectures, SIAM Journal on Scientific Computing, 36 (2014), pp. 66–93.

[RI4] E. Agullo, C. Coti, T. Herault, J. Langou, S. Peyronnet, A. Rezmerita, F. Cappello,and J. Dongarra, Qcg-ompi: Mpi applications on grids, Future Generation Computer Systems,(2010).

[RI5] E. Agullo, L. Giraud, A. Guermouche, A. Haidar, and J. Roman, Parallel algebraic domaindecomposition solver for the solution of augmented systems, Advances in Engineering Software, (2012).

[RI6] E. Agullo, L. Giraud, A. Guermouche, and J. Roman, Parallel hierarchical hybrid linear solversfor emerging computing platforms, Compte Rendu de l’Académie des Sciences : Serie Mécanique, 339(2011), pp. 96–103.

[RI7] E. Agullo, A. Guermouche, and J.-Y. L’Excellent, Reducing the i/o volume in an out-of-coresparse multifrontal solver, SIAM Journal on Scientific Computing, 31 (2010), pp. 4774–4794.

[RI8] P. Amestoy, I. S. Duff, A. Guermouche, and T. Slavova, Analysis of the solution phase of aparallel multifrontal approach, Parallel Computing, (2009).

[RI9] C. Augonnet, S. Thibault, R. Namyst, and P.-A. Wacrenier, Starpu: a unified platform fortask scheduling on heterogeneous multicore architectures, Concurrency and Computation: Practice andExperience, 23 (2011), pp. 187–198.

[RI10] D. Barthou, O. Brand-Foissac, O. Pene, G. Grosdidier, R. Dolbeau, C. Eisenbeis,M. Kruse, K. Petrov, and C. Tadonki, Automated code generation for lattice quantum chro-modynamics and beyond, Journal of Physics: Conference Series, 510 (2014), p. 012005.

[RI11] M. Barrault, B. Lathuilière, P. Ramet, and J. Roman, Efficient parallel resolution of thesimplified transport equations in mixed-dual formulation, Journal of Computational Physics, 230 (2011),pp. 2004–2020.

[RI12] A. Benoit, L.-C. Canon, E. Jeannot, and Y. Robert, Reliability of task graph schedules withtransient and fail-stop failures: complexity and algorithms, Journal of Scheduling, 15 (2012), pp. 615–627.

[RI13] B. Bertran, J. Bruneau, D. Cassou, N. Loriant, E. Balland, and C. Consel, Diasuite:a tool suite to develop sense/compute/control applications, Science of Computer Programming, Fourthspecial issue on Experimental Software and Toolkits, (2012).

[RI14] F. Broquedis, N. Furmento, B. Goglin, P.-A. Wacrenier, and R. Namyst, Forestgomp: anefficient openmp environment for numa architectures, International Journal of Parallel Programming,(2010).


[RI15] J. Bruneau and C. Consel, Diasim: A simulator for pervasive computing applications, Software:Practice and Experience, (2012).

[RI16] L.-C. Canon, O. Dubuisson, J. Gustedt, and E. Jeannot, Defining and controlling the het-erogeneity of a cluster: the wrekavoc tool, Journal of Systems and Software, 83 (2010), pp. 786–802.

[RI17] L.-C. Canon and E. Jeannot, Evaluation and optimization of the robustness of dag schedules inheterogeneous environments, IEEE Transactions on Parallel and Distributed Systems, 21 (2010).

[RI18] D. Cassou, J. Bruneau, C. Consel, and E. Balland, Towards a tool-based development method-ology for pervasive computing applications, IEEE TSE: Transactions on Software Engineering, 38 (2012),pp. 1445–1463.

[RI19] M. Chanaud, L. Giraud, D. Goudin, J.-J. Pesqué, and J. Roman, A parallel full geometricmultigrid solver for time harmonic maxwell problems, SIAM Journal on Scientific Computing, 36 (2014).

[RI20] L. Djoudi, J.-T. Acquaviva, and D. Barthou, Compositional approach applied to loop special-ization, Concurrency and Computation: Practice and Experience, 21 (2009).

[RI21] Z. Drey and C. Consel, Taxonomy-driven prototyping of home automation applications : a novice-programmer visual language and its evaluation, Journal of Visual Languages and Computing, (2012).

[RI22] F. Dupros, F. De Martin, E. Foerster, D. Komatitsch, and J. Roman, High-performancefinite-element simulations of seismic wave propagation in three-dimensional non linear inelastic geolog-ical media, Parallel Computing, 36 (2010), pp. 308–325.

[RI23] S. Genaud, E. Jeannot, and C. Rattanapoka, Fault management in p2p-mpi, InternationalJournal of Parallel Programming, 37 (2009), pp. 433–461.

[RI24] L. Ghemtio, E. Jeannot, and B. Maigret, Efficiency of a hierarchical protocol for highthroughputstructure-based virtual screening on grid5000 cluster grid, Open Access Bioinformatics, 2 (2010), pp. 41–53.

[RI25] B. Goglin, High-performance message passing over generic ethernet hardware with open-mx, ParallelComputing, 37 (2011), pp. 85–100.

[RI26] B. Goglin, Nic-assisted cache-efficient receive stack for message passing over ethernet, Concurrencyand Computation: Practice and Experience, 23 (2011), pp. 199–210.

[RI27] B. Goglin and S. Moreaud, Knem: a generic and scalable kernel-assisted intra-node mpi commu-nication framework, Journal of Parallel and Distributed Computing, 73 (2013), pp. 176–188.

[RI28] B. Goglin, J. Squyres, and S. Thibault, Hardware locality: Peering under the hood of yourserver, Linux Pro Magazine, (2011), pp. 28–33.

[RI29] J. Gustedt, E. Jeannot, and M. Quinson, Experimental methodologies for large-scale systems:a survey, Parallel Processing Letters, 19 (2009), pp. 399–418.

[RI30] E. Jeannot, Symbolic mapping and allocation for the cholesky factorization on numa machines: Re-sults and optimizations, International Journal of High Performance Computing Applications, 27 (2013),pp. 283–290.

[RI31] E. Jeannot, G. Mercier, and F. Tessier, Process placement in multicore clusters: Algorithmicissues and practical techniques, IEEE Transactions on Parallel and Distributed Systems, (2013).

[RI32] E. Jeannot, E. Saule, and D. Trystram, Optimizing performance and reliability on heteroge-neous parallel systems: Approximation algorithms and heuristics, Journal of Parallel and DistributedComputing, 72 (2012), pp. 268–280.

[RI33] P. Koval, D. Foerster, and O. Coulaud, Fast construction of the kohn–sham response functionfor molecules, Physica Status Solidi B, 247 (2010), p. 1841–1848.

BIBLIOGRAPHY 389

[RI34] P. Koval, D. Foerster, and O. Coulaud, A parallel iterative method for computing molecularabsorption spectra, Journal of Chemical Theory and Computation, 6 (2010), pp. 2654–2668.

[RI35] D. Mbengoue, D. Genet, C. Lachat, E. Martin, M. Mogé, V. Perrier, F. Renac,M. Ricchiuto, and F. Rue, Comparison of high order algorithms in aerosol and aghora for com-pressible flows, ESAIM: Proceedings, 43 (2013), pp. 1–16.

[RI36] J. Mercadal, Z. Drey, and C. Consel, Denotational semantics of a user-oriented, domain-specific language, Electronic Proceedings in Theoretical Computer Science, 129 (2013), pp. 229–249.

[RI37] S. Moustafa, I. Dutka Malen, L. Plagne, A. Ponçot, and P. Ramet, Shared memoryparallelism for 3d cartesian discrete ordinates solver, Annals of Nuclear Energy, (2014).

[RI38] F. Pellegrini, Current challenges in parallel graph partitioning, Comptes-Rendus de l’Académiedes Sciences, Mécanique, 339 (2011), pp. 90–95.


[RN1] L. Aguilova, H. Sauzéon, É. Balland, C. Consel, and B. N’Kaoua, [aggir scale: a contri-bution to specifying the needs of disabled elders]., Revue Neurologique, 170 (2014), pp. 216–21.

[RN2] S. Mahmoudi, P. Manneback, C. Augonnet, and S. Thibault, Traitements d’images surarchitectures parallèles et hétérogènes, Technique et Science Informatiques, (2012).

[RN3] H. Sylvain, A. Denis, and D. Barthou, Programmation unifiée multi-accélérateur opencl, Tech-niques et Sciences Informatiques, 31 (2012), pp. 1233–1249.

[RN4] C. Vuchener and A. Esnard, Équilibrage dynamique avec nombre variable de processeurs par uneméthode de repartitionnement de graphe, Technique et Science Informatiques (TSI), 31 (2012), pp. 1251–1271.


[OI1] E. Jeannot, R. Namyst, and J. Roman, Proceedings of Euro-Par 2011 Parallel Processing - 17thInternational Conference, Part II, vol. 6853, Springer, 2011.

[OI2] E. Jeannot, R. Namyst, and J. Roman, Proceedings of Euro-Par 2011: Parallel Processing Work-shops - CCPI, CGWS, HeteroPar, HiBB, HPCVirt, HPPC, HPSS, MDGS, ProPer, Resilience, UCHPC,VHPC, Bordeaux, France, August 29 - September 2, 2011, Revised Selected Papers, Part I, vol. 7155,Springer, 2012.

[OI3] E. Jeannot, R. Namyst, and J. Roman, Proceedings of Euro-Par 2011: Parallel Processing Work-shops - CCPI, CGWS, HeteroPar, HiBB, HPCVirt, HPPC, HPSS, MDGS, ProPer, Resilience, UCHPC,VHPC, Bordeaux, France, August 29 - September 2, 2011, Revised Selected Papers, Part II, vol. 7156,Springer, 2012.

[OI4] E. Jeannot, J. Roman, and R. Namyst, Proceedings of Euro-Par 2011 Parallel Processing - 17thInternational Conference, Part I, vol. 6852, Springer, 2011.

[OI5] E. Jeannot and J. Zilinskas, High Performance Computing on Complex Environments, Wiley,2014.

[OI6] F. Pellegrini and S. Canevet, Droit des Logiciels, Presses universitaires de France, 2013.

[OI7] P. Vicat-Blanc Primet, B. Goglin, R. Guillier, and S. Soudan, Computing Networks: FromCluster to Cloud Computing, Wiley-ISTE, 2011.



[ON1] B. Goglin, Réseaux rapides et stockage distribué dans les grappes de calculateurs, Editions Univer-sitaires Européennes, 2010.

[ON2] P. Vicat-Blanc Primet, R. Guillier, S. Soudan, and B. Goglin, Réseaux de calcul - desgrappes aux nuages de calcul, Hermès Science - Lavoisier, 2010.


[CHI1] E. Agullo, C. Augonnet, J. Dongarra, H. Ltaief, R. Namyst, S. Thibault, and S. To-mov, Faster, cheaper, better – a hybridization methodology to develop linear algebra software for gpus,in GPU Computing Gems, W. mei W. Hwu, ed., vol. 2, Morgan Kaufmann, 2010.

[CHI2] P. R. Amestoy, A. Buttari, I. S. Duff, A. Guermouche, J.-Y. L’Excellent, and B. Uçar,The multifrontal method, in Encyclopedia of Parallel Computing, D. Padua, ed., Springer, 2011,pp. 1209–1216.

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[AI39] G. Latu, M. Becoulet, G. Dif-Pradalier, V. Grandgirard, M. Hoelzl, G. Huysmans,X. Lacoste, E. Nardon, F. Orain, C. Passeron, P. Ramet, and A. Ratnani, Non regressiontesting for the jorek code, tech. rep., 2012.

[AI40] P. Liu, Intégration de politiques de sécurité dans les systèmes ubiquitaires, PhD thesis, UniversitéSciences et Technologies - Bordeaux I, 2013.

[AI41] T. Ma, G. Bosilca, A. Bouteiller, B. Goglin, J. Squyres, and J. Dongarra, Kernelassisted collective intra-node communication among multicore and manycore cpus, tech. rep., 2010.

[AI42] A. Mazouz, S.-A.-A. TOUATI, and D. Barthou, Measuring and analysing the variations ofprogram execution times on multicore platforms: Case study, tech. rep., 2010.

[AI43] M. Messner, B. Bramas, O. Coulaud, and E. Darve, Optimized m2l kernels for the chebyshevinterpolation based fast multipole method, tech. rep., 2012.

[AI44] R. Namyst, Programming heterogeneous, accelerator-based multicore machines:current situation andmain challenges. 2011.

[AI45] F. Pellegrini, Contributions au partitionnement de graphes parallèle multi-niveaux, PhD thesis,Université Sciences et Technologies - Bordeaux I, 2009.

[AI46] L. Stanisic, S. Thibault, A. Legrand, B. Videau, and J.-F. Méhaut,Modeling and simulationof a dynamic task-based runtime system for heterogeneous multi-core architectures, tech. rep., 2014.

[AI47] F. Trahay, A. Denis, and Y. Ishikawa, A generic and high performance approach for faulttolerance in communication library, tech. rep., 2010.

[AI48] C. Vuchener and A. Esnard, Dynamic load-balancing with variable number of processors basedon graph repartitioning, tech. rep., 2012.


[AN1] E. Balland, Conception d’un langage dédié à l’analyse et la transformation de programmes, PhDthesis, Université Sciences et Technologies - Bordeaux I, 2009.

[AN2] O. Coulaud, Dynamique de systèmes d’équations non-newtoniens, PhD thesis, Université Scienceset Technologies - Bordeaux I, 2013.


[AN3] S. Fourestier, F. Pellegrini, and P. Ramet, Amélioration du comportement numérique dessolveurs en prenant en compte les poids de la matrice lors de la décomposition de domaines, tech. rep.,2014.

[AN4] B. Goglin, De votre boulangerie à un système d’exploitation multiprocesseur. 2011.

[AN5] B. Goglin, Et plus vite si affinités... 2011.

[AN6] B. Goglin, Les réseaux pour le calcul haute performance : facteur, livreur ou déménageur ? 2013.

[AN7] B. Goglin, Vers des mécanismes génériques de communication et une meilleure maîtrise des affinitésdans les grappes de calculateurs hiérarchiques, PhD thesis, Université Sciences et Technologies - Bor-deaux I, 2014.

[AN8] B. Goglin and B. Putigny, Idée reçue: Comparer la puissance de deux ordinateurs, c’est facile !2013.

[AN9] F. Pellegrini, Chaînes de confiance et périmètres de certification : le cas des systèmes de "voteélectronique", tech. rep., 2014.

[AN10] F. Pellegrini and S. Canevet, Le droit du numérique : une histoire à préserver, tech. rep., 2012.

[AN11] C. Rossignon, O. Aumage, and S. Thibault, Etude de la parallélisation du produit ma-trice/vecteur creux sur processeurs hétérogènes. 2011.

[AN12] C. Roelandt, O. Aumage, and S. Thibault, Association de modèles de programmation pourl’exploitation de clusters de gpus dans le calcul intensif. 2011.


[AN14] C. Vuchener, Équilibrage de charge dynamique avec un nombre variable de processeurs basé surdes méthodes de partitionnement de graphe, PhD thesis, Université Sciences et Technologies - BordeauxI, 2014.

Patents

Registered software– MAQAO– StarPU: A Unified Runtime System for Heterogeneous Multicore Architectures (http://runtime.bordeaux.inria.fr/StarPU/)– hwloc: Portable Hardware Locality (http://www.open-mpi.org/projects/hwloc/)– KNEM: High-Performance Intra-Node MPI Communication– Open-MX: Myrinet Express over Generic Ethernet Hardware– DiaSuite: A suite of tools for developing applications orchestrating networked objects– DiaSuiteBox: A platform and an online store for applications orchestrating networked objects– EPSN: A Computational Steering Environment for Numerical Simulations (http://www.labri.fr/projet/epsn/)– HIPS: Hierarchical Iterative Parallel Solver (http://hips.gforge.inria.fr/)– MaPHyS: Massively Parallel Hybrid Solver– MORSE: Matrices Over Runtime Systems Exascale (http://icl.cs.utk.edu/projectsdev/morse/software/index.html)

F.6. SATANAS 407

– MUMPS: A parallel sparse direct solver (http://mumps.enseeiht.fr)– PaStiX: Parallel Sparse matriX package (http://pastix.gforge.inria.fr/)– ScalFMM: Scalable Fast Multipole Method is high performance generic Fast Multipole Method (http://scalfmm-public.gforge.inria.fr/doc/)

– Scotch & PT-Scotch : Software package and libraries for sequential and parallel graph partitioning, staticmapping and clustering, sequential mesh and hypergraph partitioning, and sequential and parallel sparsematrix block ordering (http://www.labri.fr/perso/pelegrin/scotch/)

Other software– QIRAL: A High Level Language for Lattice QCD Code Generation– TreeMatch– ForestGOMP– Marcel– Common Communication Interface– NewMadeleine– PadicoTM– klang-omp OpenMP compiler– kastors OpenMP benchmark suite– netloc: Portable Network Locality– MONIQUA: MONitoring graphic user Interface for QM/MM Applications (http://nossi.gforge.inria.fr)– MPICPL: MPI CouPLing (http://mpicpl.gforge.inria.fr)– OPTIDIS: Large Scale Dislocation Dynamics Simulations– VITE: Visualization, Execution trace (http://vite.gforge.inria.fr)

Completed PhDs– Stéphanie Moreaud, 10/2007 - 12/2011– Jérôme Clet-Ortega, 10/2007 - 01/2012– François Broquedis, 10/2007 - 12/2010– Zoé Drey, 11/2006-10/2011– François trahay, 10/2006 - 11/2009– François trahay, 10/2006 - 11/2009– Cédric Augonnet, 10/2008 - 12/2011– Mathieu Faverge, 11/2006 - 12/2009– Sylvain Henry, 10/2009 - 11/2013– Bertrand Putigny, 11/2010 - 03/2014– Julien Jaeger, 10/2007 - 07/2012– Louis-Claude Canon, ? - ?– Julien Mercadal, 10/2006 - 10/2011– Damien Cassou, 10/2007 - 03/2011– Henner Jakob, 05/2008 - 06/2011– Julien Bruneau, 10/2008 - 05/2012– Hongyu Guan, 02/2009 - 06/2012– Quentin Enard, 02/2010 - 05/2013– Peng Fei Liu, 10/2009 - 01/2013– Stéphanie Gatti, 02/2010 - 02/2014– Rached Abdelkhalek, 01/2008 - 12/2013– Mathieu Chanaud, 12/2007 - 10/2011– Fabrice Dupros, 01/2007 - 12/2010


– Jérémie Gaidamour, 10/2006 - 12/2009– Bruno Lathuilière, 11/2006 - 02/2010– Nicolas Richart, 10/2005 - 01/2010– Pablo Salas, 06/2011 - 11/2013– Jérôme Soumagne, 04/2009 - 12/2012– Clément Vuchener, 09/2010 - 02/2014

including cotutelle PhDs (international)– Alexandre Duchateau (with UIUC, USA), 10/2008 - 08/2013

including cotutelle PhDs (national)– François Diakhaté, octobre 2007 - décembre 2010– Cyril Bordage, 10/2009 - décembre 2013– Pablo Oliveira Castro, 10/2007 - 12/2010– Andres Charif-Rubial, 10/2008 - 10/2012– Abdhelhafid Mazouz, 09/2008 - 12/2012

Completed habilitations– Olivier Coulaud, 29/11/2013– Brice Goglin, 15/04/2014


Steering committee (international)– International Conference on Cluster Computing (Cluster), since 2011– International European Conference on Parallel and Distributed Computing (Euro-Par), since 2011

Steering committee (national)

Program committee (international)– ParCo’09– CCGRID’09– EuroMPI’09– ICPADS’09– EuroMPI’10– HiPC’10– HPCVirt’10– ICCCN’10– IWOMP’10– CASS 2011– EuroMPI 2011– PMEA 2011– A4MMC 2011– SC’12– ROSS 2012– MSEPT 2012– ISPA 2012– CASS 2012

F.6. SATANAS 409

– SC’13– PACT13– PPAM 2013– CCGRID 2013– ROSS 2013– CASS 2013– EuroPar 2014– SC14– ICPP14– ROSS14– EuroPar 2010– Smart 2010– PLDI 2011– Smart 2011– EuroPar 2012– Smart 2012– UCHPC 2012– EuroPar 2013– IPDPS 2013– PROPER 2013– UCHPC 2013– HeteroPar 2014– HiPC 2014– ISPAN’11– EuroMPI’11– SC’12– HIPC’13– HotI’13– EuroMPI’13– Cluster’14– HotI’14– HiPC’14– CARLA’14– EuroMPI/ASIA’14– ICCCN’14– HiPC’14– HPCVirt’9– HPCVirt’10– HPCVirt’11– EuroPar 2011– EuroPar 2013– IPDPS13– IPDPS14– MuCoCos13– MuCoCos14– EuroMPI 2012– EuroMPI 2013


– EuroMPI 2014– CCGrid 2011– CCGrid 2012– HiPC 2010– P2S2 2009– P2S2 2010– HPIDC 2009– ICPADS 2012– IPTCOMM 2009– GPCE 2009– IMCT 2009– NFM 2009– SLE 2009– GPCE 2010– ICMT 2010– GTTSE 2010– NFM 2010– SLE 2010– PEPM 2011– ICWS 2011– CyPhy 2011– ICSE 2012– ICWS 2012– ICSE 2013– ICAC 2013– ICSE 2014– 40 Years of Nested Dissection– IPDPS’10– IPDPS’11– IPDPS’12– IPDPS’13– IPDPS’14– EuroMPI 2013– CCGRID 2013– Heteropar 2013– PPAM 2013– SPA 2012– HPDC 2012– PDGC 2012– HiPC 2012– Heteropar 2012– Cluster 2011– CSE 2010)– CLUSTER 2010– PARENG’09– PDSEC’09– SC’09

F.6. SATANAS 411

– PRECOND’09– EuroMicroPDP’09– PARCO’09– WAVES’09– VECPAR’10– HiPC 2010– PDSEC’10– PMAA’10– EuroMicroPDP’10– SC’11– PDSEC’11– PDCN’11– EuroMicroPDP’11– SC’12– PDSEC’12– VECPAR’12– EuroMicroPDP’12– HiPC 2013– PRECOND’13– IPDPS’13– PARENG’13– PDCN’13– PDSEC’13– ICPP’13– EuroMicroPDP’13– CCGRID 2014– IPDPS’14– EuroMicroPDP’14– DD21– HiPC 2014– ICS’14– PDCN’14– PDSCE’14– VECPAR’14

Program committee (national)– CFSE 2009– Renpar 2009– Renpar 2011– Realis 2013– RenPar’13– Renpar 20– Renpar 21– Realis-01

Presidence of program committee (international)– Chair of Topic Multicore and Manycode Programming for the EuroPar 2014 conference– Chair of Topic High-Performance Networks and Communications for the EuroPar 2014 conference


– Chair of Topic High Performance Architectures and Compilers for the EuroPar 2013 conference– Chair of Technical Program Committee “Architecture and Networks” for the SuperComputing 2011 con-ference

– Chair of Technical Program Committee of the Twelfth International Workshop on Algorithms, Models andTools for Parallel Computing on Heterogeneous Platforms, 2014

– Co-Program Chair of IEEE International Conference on Computational Science and Engineering, 2010– Local Chair of the topic High Performance and Scientific Applications for the EuroPar 2011 conference– Local Chair of the topic Parallel Numerical Algorithms for the EuroPar 2011 conference– Co-Chair of the topic Applications for the Supercomputing 2011 conference

Presidence of program committee (national)

Organizing committee (conferences, seminaries, schools...) (international)– HPC-GA Workshop 2013– PRACE PATC Training Session on Runtime Systems for Heterogeneous Platform Programming withMaison de la Simulation, 2013

– CEMRACS’2010, Numerical Modeling for Fusion, Marseille France, 2010– CEMRACS’2012, Numerical Methods and Algorithms for High Performance Computing, Marseille France,2012

– PRACE PATC Training Session on Parallel Linear Algebra with Maison de la Simulation, 2013– PRACE Summer School, CINECA Italia, 2013

Organizing committee (conferences, seminaries, schools...) (national)

Presidence of organizing committee (international)– Organization of the 2011 edition of the EuroPar international conference– Organization of the 2013 CEA-EDF-Inria computer science school on Programming Heterogeneous ParallelArchitectures

– Co-Organization of the 2009 CEA-EDF-Inria scientific school ( Robust methods and algorithms for solvinglarge algebraic systems on modern high performance computing systems)

– Co-Organization of the 2011 CEA-EDF-Inria scientific school (Toward petaflop numerical simulation onparallel hybrid architectures)


Journal editorial board (international)– International Journal of Parallel, Emergent and Distributed Systems– SIAM Journal on Matrix Analysis and Applications (SIMAX)

Journal editorial board (national)

Research animation (international)

Research animation (national)



Presidence of expert committee (national)– Chair of the ANR (National Agency for Research) “Numerical Modeling” evaluation committee, 2011-2013– Chair of the Project Committee of Inria Bordeaux - Sud-Ouest, 2009-2011

Membership in expert committee (international)– Contributor to the ETP4HPC Strategic Research Agenda, 2013

F.6. SATANAS 413

– STIC-AmSud evaluation committee, 2010– EESI Working Group 4.3 (Numerical Libraries, Solvers and Algorithms), 2011– EESI-2 Working Groups 4.1 (Numerical Libraries, Solvers and Algorithms) and 4.3 (Resilience), 2013-2015– Expert for the Dutch FWO programme, 2012– Expert for the Italian VQR 2004-2010 programme, 2012– Expert for PRACE programme, 2013-2014– Member of the Board of ETP4HPC (European Technology Platform for High Performance Computing),2013

– Member of ETP4HPC Working Group for Centres of Excellence, 2013– Israel Science Foundation, 2014

Membership in expert committee (national)– CNRS INS2I PES 2014– ANR Cosinus scientific evaluation committee, 2008-2010– AERES evaluation of LIP6 laboratory, 2013– ANR Cosinus scientific evaluation committee, 2010– ANR MN scientific evaluation committee, 2011-2013– C3I GENCI scientific evaluation committee, 2011-2013– GENCI user scientific committee (Mathematics and Computer Sciences), 2011 -– Member of DAS-SCI (Domaine d’Activité technologiques Stratégiques - Systèmes complexes, Conception,architecture et Intégration) of Aerospace Valley cluster of competitiveness, 2013 -

– Member of the Research Direction of Inria (Deputy Scientific Director of the Inria research domain entitledApplied Mathematics, Computation and Simulation), 2012 -

– Member of the National Evaluation Committee of Inria, 2009-2011– Member of the Strategic Comity for Intensive Computation of the French Research Ministry, 2009-2013– Member of the Scientific Board of CEA/DAM, 2009-– Member of the Scientific Board of Maison de la Simulation, 2009-– Member of the French Information Group for PRACE, 2009-– Member of the Technical Group of GENCI, 2009-

Individual expert (reviewer) (international)– Evaluator for University of Mons, Call for Collaborative Projects ARC 2014– ANR International White Program, Call for Collaborative Projects 2009– Evaluator for Cofecub projects (French-Brazil cooperation) 2010– Evaluator for NSF Projects in 2010: G8 Exascale– Evaluator for NSF Projects in 2012: Strategic Technologies for Cyberinfrastructure Program– Journal paper review for JPDC– Journal paper review for TPDS– Journal paper review for CCPE– Accompanying commity for Sébastien Frémal PhD, Mons, Belgium– Mid-PhD defense opponent, Uppsala, Sweden– Contributor to the EESI (European Exascale Software Initiative) expert group, 2011– Member of an international expert panel in charge of auditing the ICT sector in Chad, 2013– Journal paper review for Applied Numerical Mathematics– Journal paper review for BIT Numerical Mathematics– Journal paper review for Computer Physics Communications– Journal paper review for Concurrency and Computation: Practice and Experience– Journal paper review for Journal of Computational and Applied Mathematics


– Journal paper review for Numerical Linear Algebra with Applications– Journal paper review for Neural Processing Letters– Journal paper review for Parallel Computing– Journal paper review for Computers and Fluids– Journal paper review for Geophysical Prospecting– Journal paper review for IEEE Trans. on Parallel and Distributed Systems– Journal paper review for International Journal for Numerical Methods in Fluids– Journal paper review for SIAM J. Scient. Comp.– Journal paper review for SIAM J. Numer. Analysis– Journal paper review for ACM Trans. on Mathematical Software– Journal paper review for Journal of Engineering Mathematics– Journal paper review for SIAM J. Matrix Analysis and Applications– Journal paper review for Journal of Computational Physics– Journal paper review for Advances in Computational Mathematics

Presidence of selection board– President of committee in charge of recruiting a Professor, Enseirb, Bordeaux, 2009– President of committee in charge of recruiting a Professor, Enseirb, Bordeaux, 2010– President of committee in charge of recruiting a Professor, Enseirb, Bordeaux, 2012

Membership in selection board– President of committee in charge of recruiting a lecturer, UJF, Grenoble, 2010– President of committee in charge of recruiting a lecturer, ENSEEIHT, Toulouse, 2009– President of committee in charge of recruiting a lecturer, UJF, Grenoble, 2013– Committee in charge of recruiting a Software Development Engineer, Inria Grenoble, 2010– Committee in charge of recruiting a Software Development Engineer, Inria Lille, 2012– Committee in charge of recruiting a Financial Affair Engineer, Inria Lille, 2011– Committee in charge of recruiting a Communication Assistant, Inria Bordeaux, 2011– Committee in charge of recruiting a Innovation and Collaboration Assistant, Inria Bordeaux, 2012– Committee in charge of recruiting a System and Network Administrator, Inria Bordeaux, 2013– Committee in charge of recruiting a System Administrator, Inria Bordeaux, 2012– Committee in charge of recruiting a lecturer, UVSQ, Versailles, 2011– Committee in charge of recruiting a professor, U. Bordeaux, 2011– Committee in charge of recruiting a professor, UVSQ, 2012– Committee in charge of recruiting a professor, IPB, 2013– Committee in charge of recruiting a professor, IPB, 2012– Inria Young Researchers Selection Board (postdocs, PhDs) 2010-2014– Committee in charge of recruiting a lecturer, INRIA-IPB, Bordeaux, 2009– Vice-President of committee in charge of recruiting a lecturer, IPB, Bordeaux, 2010– Committee in charge of recruiting a lecturer, UPS, Toulouse, 2011– Committee in charge of recruiting an assistant professor, Inria-Univ. Bordeaux research chair, 2009– Committee in charge of recruiting an assistant professor, Inria-Univ. Pau research chair, 2010– Committee in charge of recruiting a professor, Univ. Pau, 2013– Committee in charge of recruiting an assistant professor, IPB, 2012– National Committee in charge of recruiting Inria young graduate scientists (CR1), 2009-2011– National Committee in charge of recruiting Inria senior researchers (DR2), 2009-2011– National Committee in charge of career advancement (CR2-CR1, DR2-DR1, DR1-DR0), 2009-2011– National Committee in charge of recruiting Inria research position scientists, 2012 & 2014

F.6. SATANAS 415

– National Committee in charge of Inria PES, 2010 & 2013

Membership in prize jury– Reviewer of a candidate for Prix Paul Caseau, EDF, 2014

Reviewing of PhD or habilitation (international)– Jesper Andersen, 2010– Dima Aladidi, 2010– Bas Fagginger Auer, PhD, U. Utercht, Netherlands, 2013– Alessio Merlo (University of Genoa, Italy), 2010– Robbert Higgins (University College Dublin, Ireland), 2011– Jan-Christian Meyer (NTNU, Trondhiem, Norway), 2012– Sidi Mahmoudi (Univeristé de Mons, Belgium), 2013

Reviewing of PhD or habilitation (national)– Patrice Kadionik, 2012– Thierry Monteil, 2010– Laercio Pilla Lima, 2014– Simplice Donfack, 2012– Marcio Bastos Castro, 2012– Vincent Pichon, 2012– Marc Palyart, 2012– Christiane Pousa, 2011– Swann Perarnau, 2011– Everton Hermann, 2011– Camille Coti, 2009– Brice Videau, 2009– Sylvain Didelot, 2014– Amira Mensi, 2013– Yuri Kachnikov, 2013– Guillaume Rizk, 2013– Junjie Lai, 2013– Wilfried Kirschenmann, 2012– Samir Ammenouche, 2011– Caroline Lu, 2009– Tien Dung Cao– Adrienne Tankeu– Manzoor Ahmad, 2013– Elmehdi, 2013– Miruna Stoicescu, 2013– Arnad Sihha– Matthieu Lefebvre, 2012– Tram Truong Huu, 2010– Alexandru Dobilla, 2011– David Guibert, 2009– Mikolaj Szyldlarski, 2010– Thomas Dufaud, 2011– Mathias Jacquelin, 2011– Joseph Charles, 2012


– Sébastien Duminil, 2012– Claude Obrecht, 2012– Mathias Malandin, 2013– Désiré Nuentsa Wakam, 2014– Laura Grigori, 2009– Roland Martin, 2009– Claude Tadonki, 2013

Membership of PhD/habilitation committee (international)

Membership of PhD/habilitation committee (national)

– Christian Perez, 2006– Andres Charif Rubial, 2012– Souad Koliaï, 2011– Fabrice Dupros, 2010– Nicolas Richart, 2010– Wilfrid Jouve, 2009– Ludovic Hablot, 2009– Hazem Fkaier, 2009– Stephane Zuckermann, 2010– Jose Noudohouenou, 2013– Jean-Marc Gratien, 2013– Vincent Boulos, 2012– François-Henry Rouet, 2012– Cédric Lachat, 2013– Cyril Bordage, 2013– Clément Vuchener, 2014– Benjamin Depardon, 2010– Mohamed Slim Bouguerra, 2011– Cristian Klein, 2012– Remi Sharrock, 2010– Benjamin Depardon, 2010– François Trahay, 2009– Cédric Augonnet, 2011– Stéphane Jauré, 2012– Sébastien Fourestier, 2013– Sylvain Henry, 2013– Benoit Lizé, 2014– Florent Ventimiglia, 2014– Nathalie Raveu, 2012– Brice Goglin, 2014

F.6. SATANAS 417


Projects (international)– EU FP7 PEPPHER Project, 2010-2012– EU FP7 HPC-GA Project, 2012-2014– EU FP7 MONT-BLANC 2 Project, 2013-2016– ANR-JST FP3C Project, 2010-2012– Bilateral Japan-French “Sakura” Projet with University of Tokyo, 2009-2010– Bilateral Japan-Portugal “Pessoa” Projet with University of Lisbon and University of Évora, 2009-2010– STIC-AmSud SEHLOC Project, 2013-2014– CNRS-JST NEGST Project, 2006-2009– Biomasud Project, 2011-2013– EU FP7 PEPPHER Project, 2010-2012– EU FP7 HPC-GA Project, 2012-2014– EU FP7 MONT-BLANC 2 Project, 2013-2016– ANR-JST FP3C Project, 2010-2012– EU FP7 EESI Project, 2012– EU FP7 Marie-Curie ITN MyPlanet Project, 2008-2012– EU FP7 STREP EXA2CT Project, 2013-2016– EU FP7 PRACE 3IP PCP-WP8, 2012-2016– France-Berkeley Fund, 2010-2012– G8-ECS (Enabling Climate Simulation at extreme scale) Project with Univ. Illinois at Urbanna Cham-paign, Univ. Tennessee at Knoxville, German Research School for Simulation Sciences, Univ. Victoria,Titech, Univ. Tsukuba, NCAR, Barcelona Supercomputing Center, 2011-2014

– HOSCAR (High performance cOmputing and SCientific dAta management dRiven by highly demandingapplications) French-Brazilian Project (Inria & CNPq), 2012 -

Projects (national)– ProHMPT, ANR COSINUS, 2009-2012– COOP, ANR COSINUS, 2010-2013– MediaGPU, ANR ContInt, 2010-2012– SONGS, ANR Infra, 2012-2015– LEGO, ANR CIGC, 2006-2009– MOEBUS, ANR INFRA, 2014-2017– FLFS, ANR Blanc, 2008-2010– FUI, SmartImmo, 2010-2011– PETAL, ANR COSINUS, 2009 - 2010– PETALh, ANR COSINUS, 2011 - 2012– SOLSTICE, ANR CIS, 2006-2010– NOSSI, ANR CIS, 2008-2010– RESCUE, ANR Blanc, 2010-2014– OPTIDIS, ANR COSINUS, 2010-2014– BOOST, ANR Blanc, 2010-2014– SONGS, ANR INFRA, 2011-2015– ANEMOS, ANR MN, 2012-2016– SOLHAR, ANR MONU, 2013-2017– PLAFRIM, National Experimental Parallel Computing Platform, 2009 -


– CRA-HPC, Innovative Simulation Methods for Large Scale Numerical Prototypes on Emerging Architec-ture Computers (Regional Council), 2013-2015

– C2S@Exa, Inria Project Lab involving 11 Project-Teams, 2013-2015

Joint publications (international)– University of Vienna, Austria– University of Tsukuba, Japan– University of Tokyo, Japan– University of Tennessee-Knoxville, USA– University of Linköping, Sweden– University of Wisconsin-La Crosse, USA– Argonne National Laboratory, USA– Cisco Systems, USA– University of Illinois, Urbana-Champaign, USA– University of Oregon, USA– University of Copenhagen, Denmark– University of Halmstad, Sweden– Rice University, USA– University of Minnesota, USA– University of California, Berkeley, USA– Ohio State University, USA– ETH Zurich, Switzerland– Nagoya University, Japan– Stanford University, USA

Joint publications (national)– University of Grenoble, France– University of Versailles Saint Quentin, France– Exascale Computing Research Laboratory, France– University of Orsay, France– Mines ParisTech, Fontainebleau, France– Inria Grenoble - Rhône-Alpes, France– Total Pau, France– Inria Lille, France– LAAS, Toulouse, France– CERFACS, Toulouse, France– CPMOH, Bordeaux, France– I3M, Montpellier, France– Laplace, Toulouse, France

Other collaborations (international)– MORSE, Inria Associate team with University of Tennessee-Knoxville (ICL), University of Colorado-Denver(Dept. of Maths. and Stat. Sciences), 2011-2013

– MPI-Runtime, Inria Associate team with Argonne National Laboratory, USA, 2008-2010– OPALI, Inria Associate team with University of Montréal, Québec, Canada, 2012-– FASTLA, Inria Associate team with Stanford University (Institute for Computational and MathematicalEngineering) and Lawrence Berkeley National Laboratory (Scientific Computing Group), 2012-2014

Other collaborations (national)

Research visitors (international)

F.6. SATANAS 419

– Tetsuya Odajima, university of Tsukuba, Japan, 2011, two weeks– Tim Sheard, university of Oregon,USA, 2012, three months– George Bosilca, University of Tennessee at Knoxville, 2013, one year– Eric Darve, Stanford University, 2012, three weeks– Hatem Ltaief, KAUST University, 2011, one week– Yousef Saad, University of Minnesota, 2012, two weeks– Ichitaro Yamazaki, Lawrence Berkeley National Laboratory, 2011, two weeks

Research visitors (national)

Research visits (international)– Olivier Aumage, UFRGS, Porto Alegre, Brazil, 2012, one month– Charles Consel, McGill University, Montréal, Québec – Canada, 2012, eleven months

Research visits (national)


Industrial contracts– Samsung GRO SAIT 2012-2013– Total 2012-2015– Total 2011– CEA/DAM, 2013– EDF R&D, 2011– Trois bourses CIFRE Thales, 2009-2012– Bouygues, 2011-2011– CEA/DAM, 2008-2010– EDF R&D, 2007-2009– TOTAL, 2008-2010– TOTAL, 2010-2013– TOTAL, 2011-2014– AIRBUS, 2013-2016– CEA Cadarache, 2012-2015– EDF R&D, 2012-2015

Contributions to professional journals and overview publications

Reports for decision makers– Hearing by the S&D Group on ACTA, European Parliament, 2012– Hearing by the Sénat rapporteurs on e-voting, Sénat, 2014

Contributions to standards– Message Passing Interface 3.0, 2012

Collaborations outside of universities

Start-ups– HPC-PME initiative, collaboration with ALGO’TECH INFORMATIQUE using a PhD-consultant action,2014



Learned society, federation (international)

Learned society, federation (national)

Scientific popularization, dissemination of scientific culture– Teaching and Practice sessions to help secondary school teachers of Bordeaux Academia to start ComputerScience courses, 2014

– In charge of science popularization for Inria Bordeaux research centre, 2010-2014– Presenting computer science research during “Fete de la Science”, 2011-2013– Presenting computer science research and careers at Aquitec student exhibition, 2010-2014– Invited Teacher for the European COST Complex HPC School, 2013

Publications for large audience– Article about Super-computers: at the frontiers of extreme computing, published in wide audience nationalmonthly magazine “La Recherche”, november 2011

– 4 articles about High Performance Computing (multiprocessing systems, hardware affinities, computingpower, and networking) in the online magazine “Interstices”, 2011 and 2013

– Scientific consultant for CEA/DAM, 2007-2014– Scientific consultant for Exascale Computing Research Laboratory, 2009-2014

F.7. CROSS-TEAM PUBLICATIONS 421

F.7 Cross-team publicationsWe list in this section all the croos-team publications. Every such publication is also listed in the corre-sponding team sections.

The following table gives the number of cross-team publications per team.

CA I&S Mabiovis MeF Progress SatanasCA - 3 9 14 1 1I&S 3 - 17 7 4 1

Mabiovis 9 17 - 13MeF 14 7 13 - 14

Progress 1 4 14 - 3Satanas 1 1 3 -




[RI2] D. Cao, R. Castanet, P. Felix, and K. Chiew, An approach to automated runtime verificationfor timed systems: Applications to web services, JOURNAL OF SOFTWARE„ 7 (2014), pp. 1338–1350.




[RI6] E. Garnaud, S. Maabout, and M. Mosbah, Functional dependencies are helpful for partial ma-terialization of data cubes, Annals of Mathematics and Artificial Intelligence, (2013), pp. 1–30.

[RI7] K. Gerdes, L. Clémént, and R. Marlet, A grammar correction algorithm, Lecture notes incomputer science, 5591 (2011), pp. 47–63.

[RI8] N. Ouled Abdallah, H. Hadj Kacem, M. Mosbah, and A. Zemmari, Randomized broadcastingin wireless mobile sensor networks, Concurrency and Computation: Practice and Experience, 25 (2013),pp. 203–217.

[RI9] F. Queyroi, M. Delest, J.-M. Fédou, and G. Melançon, Assessing the quality of multilevelgraph clustering, Data Mining and Knowledge Discovery, 28 (2014), pp. 1107–1128.

[RI10] D. Renault and J.-F. Marckert, Compact convex sets of the plane and probability theory, ESAIM:Probability and Statistics, (2014), p. 34.




[CHI2] A. Ben Zakour, S. Maabout, M. Mosbah, and M. Sistiaga, Relaxing time granularity formining frequent sequences, in Advances in Knowledge Discovery and Management, F. G. B. P. . G. V. .D. A. Zighed, ed., Springer International Publishing, 2014, pp. 53–76.





[CI3] C. Aguerre, T. Morsellino, and M. Mosbah, Fully-distributed debugging and visualization ofdistributed systems in anonymous networks, in Proceedings of the International Conference on Informa-tion Visualization Theory and Applications, R. S. L. P. Richard, M. Kraus and J. Braz, eds., INSTICC,2012, pp. 764–767.




[CI7] M. Ben Mbarka, F. Krief, and O. Ly, Modeling long-term signature validation for resolution ofdispute, in Theory of Security and Applications Lecture Notes in Computer Science Volume 6993, 2012,vol. 6993, 2012, pp. 78–97.

[CI8] A. Benzakour, S. Maabout, M. Mosbah, and M. Sistiaga, Time constraints extension onfrequent sequential patterns, in Proceedings of KDIR conference, SciTePress, ed., 2010, pp. 281–287.

[CI9] A. Benzakour, S. Maabout, M. Mosbah, and M. Sistiaga, Uncertainty interval temporal se-quences extraction, in Proceedings of the 6th Int. Conf. on Information Systems, Technology and Man-agement (ICISTM), no. 285 in Com. Comp. Info. Science (CCIS), Springer, 2012, pp. 259–270.

[CI10] F. Berthaut, D. Janin, and M. Desainte-Catherine, libtuile : un moteur d’exécution multi-échelle de processus musicaux hiérarchisés, in Actes des Journées d’Informatique Musicale (JIM), 2013,pp. 45–50.



[CI13] H. Boujut, J. Benois-Pineau, O. Hadar, T. Ahmed, and P. Bonnet, Weighted-mse based onsaliency map for assessing video quality of h.264 video streams, in Image Quality and System Perfor-mance VIII, vol. 7867, 2011, p. 78670X.

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[CI16] D. Cao, P. Felix, R. Castanet, and I. Berrada, Testing service composition using tgse tool, inThe proceedings of SERVICES 2009 (Part I), I. C. S. Press, ed., IEEE Computer Society Press., 2009.

[CI17] D. Cao, P. Félix, and R. Castanet, Wsoft : an automatic testing tool for web services composi-tion, in 5th International Conference on Internet and Web Applications and Services, 2014, pp. 7–12.


[CI19] D. Cao, P. Félix, R. Castanet, and I. Berrada, Testing web services composition using thetgse tool, in WS-Testing 2009, 2014, pp. 187–194.


[CI21] D. Cassou, E. Balland, C. Consel, and J. Lawall, Leveraging software architectures to guideand verify the development of sense/compute/control applications, in ICSE’11: Proceedings of the 33rdInternational Conference on Software Engineering, ACM, 2011, pp. 431–440.








[CI29] D. Fourer, M. Guerry, T. Shochi, J.-L. Rouas, J.-J. Aucouturier, and A. Rilliard,Analyse prosodique des affects sociaux dans l’interaction face à face en japonais, in XXXèmes Journéesd’études sur la parole, 2014.

[CI30] D. Fourer, T. Shochi, J.-L. Rouas, J.-J. Aucouturier, and M. Guerry, Going ba-na-nas:Prosodic analysis of spoken japanese attitudes, in Proceeding of Speech Prosody 2014, 2014, p. 4.



[CI32] E. Garnaud, S. Maabout, and M. Mosbah, Using functional dependencies for reducing the sizeof a data cube, in Proccedings of the 7th International Symposium on Foundations of Information andKnowledge Systems (FOIKS), Springer, ed., LNCS 7153, 2012, pp. 145–164.

[CI33] A. Gouliemakis, J. Bridier, A. Barré, O. Claisse, D. Sherman, P. Durrens, A. Lonvaud-Funel, and E. Bon, How does oenococcus oeni adapt to its environment? a pangenomic oligonucleotidemicroarray for analysis o. oeni gene expression under wine shock., in oeno2011, Actes de Colloques du9ème symposium international d’oenologie de Bordeaux, P. L. A. L. G. d. R. P. T. Univ. BordeauxSegalen (P. Darriet, L. Geny, ed., Dunod, Paris, 2012, pp. 358–363.





[CI38] N. Hanusse, S. Maabout, and R. Tofan, Matérialisation partielle des cubes de données, in Actesdes 25èmes journées "Bases de Données Avancées" BDA’09, 2009, pp. 1–20.



[CI41] D. Janin, F. Berthaud, M. Desainte-Catherine, Y. Orlarey, and S. Salvati, The t-calculus: towards a structured programing of (musical) time and space, in 2013 ACM SIGPLAN Workshop onFunctional Art, Music, Modeling & Design, 2013, pp. 23–34.

[CI42] D. Janin, F. Berthaut, and M. Desainte-Catherine, Multi-scale design of interactive musicsystems : the libtuiles experiment, in Proceedings of the Sound and Music Computing Conference (SMC),R. Bresin, ed., 2013, pp. 123–129.

[CI43] A. Lambert, F. Queyroi, and R. Bourqui, Visualizing patterns in node-link diagrams, in Pro-ceedings of the 16th International Conference on Information Visualisation (IV’12), 2012, pp. 48–53.


[CI45] O. Ly, F. Krief, and M. Ben Mbarka, Entrusting remote software executed in an untrustedcomputation helper, in In proceedings of "Network and Service Security" (N2S’2009) IEEE, 2009.

[CI46] B. Martin, D. Brown, P. Hanna, and P. Ferraro, Blast for audio sequences alignment: afast scalable cover identification, in Proceedings of the 13th International Society for Music InformationRetrieval Conference, 2012.


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