magnetite biomineralization in m. gryphiswaldense · 2009-02-05 · 26 june 2006 damien faivre –...
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Magnetite biomineralization in M. gryphiswaldense
Damien Faivre
June 26th, 2006
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Biomineralization
→ formation of minerals by living organisms (bacteria, higher organisms…)
armature
attack defense
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Iron biomineralization
Iron oxide Organism Position Function
MagnetiteFe3O4
BacteriaChitons
FishBirds
CellsTeethHeadHead
OrientationHardness
OrientationOrientation
Goethiteα-FeOOH
Patels Teeth Hardness
Lepidocrociteγ-FeOOH
SpongesChitons
SpiculeTeeth
AnchoringHardness
Ferrihydrite5Fe2O3.9H2O
Animals –plants
Chitons
Ferritine
Teeth
Stocking
Precursor
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Iron biomineralization: example
Chiton Radulae:
• Magnetite (Fe3O4): on the surface
• Lepidocrocite (γ-FeOOH): fine underlying layer
• Dahllite ([Ca5(PO4-CO3)3(OH)]): interior
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Magnetotactic bacteria
microaerophilic α-Proteobacterium synthesizing magnetosomes
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Magnetotaxis
NS
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Magnetic orientation relies on
magnetosomes
S
N
ANOXIC
OXIC
MICROOXIC
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Magnetosomes
• Species-specific morphology
• Membrane-enclosed
• Biocompatible
Scale bar 100 nm*Schüler, 1999
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Magnetosomes
• Nano-crystals: 30-120 nm• Narrow size distribution
0.00
5.00
10.00
15.00
20.00
25.00
30.00
0 10 20 30 40 50 60
size (nm)
frequ
ency
(%)
*Faivre et al., 2006 *Posfai et al., 2006
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Functionalized magnetosomes
Applications in Biotechnology:
In vitroImmunoassays Separation of biomolecules
In vivoMagnetic drug targetingHyperthermiaMagnetic resonance imaging
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Fluorescence of isolated particles
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Magnetic properties• Size within single
magnetic-domain– Below ~ 25 nm
superparamagnetic – Above 100 nm
multidomain• High coercivity
– 6500 A × m-1
(magnetosomes) in comparison to 20 A×m-1 (Schering) (Eberbeck, 2004) *Simpson et al., 2005
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Why iron biomineralization?
• biotechnological applications
• proxies for environmental change
• model for nanomolecular interactions between living (bacteria) and non-living (minerals) systems
• model for biomineralization in higher organisms magnetoreception
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Genomic Islandwhole genome shotgun 482 kb WGS
50K 100K 150K 200K 250K 300K 350K 400K 450K
130 kb region
mms/mam genes transposase genes hypothetical genes genes with other attributed functions
130 kb core region
tRNA genes
220K 230K 240K 250K 260K 270K 280K 290K 300K 310K 320K 330K 340K 350K
The mam-genes encoding magnetosome membrane proteins are arranged in genomic island (Ullrich et al., 2005)
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26 June 2006 Damien Faivre – Workshop on Complex Materials
The chain under genetic control*
*Scheffel et al., Nature, 2006
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26 June 2006 Damien Faivre – Workshop on Complex Materials
The chain under genetic control*
*Scheffel et al., Nature, 2006 and Komeili et al., Science, 2006
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Biochemistry of magnetite formation
*Bazylinski and Frankel., Nature Rev., 2004
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Proposed reaction pathway*
*Frankel et al., 1983
1. Fe(III) cell exterior
→ Fe(II) cell interior
2. Low density Fe(III) oxyde
3. Ferrihydrite
4. Magnetite
But:
1. No controlled conditions
2. Lack dynamic of process
3. Need association with some other techniques
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Controlled growth in fermentor
Control of:
1.Temperature
2.pH
3.PO2
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Induction experiments
0 min 55 min 100 min 220 min 340 min
Allow to follow the dynamic of the process
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Minimal medium
How to study chain formation in growing cells?
0
50
100
150
200
250
0 1 2 3 4 5 6
time (h)
OD
565 (
*100
0)
0.00
0.50
1.00
1.50
2.00
2.50
3.00
Cm
ag (a
. u.)
1. Iron uptake just for magnetite formation, not for growth
2. Parameters such as # crystals / cell not disturbed by cell division
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Evolution of mineralogical properties
time after induction 0h55 1h40 2h10 2h40 3h40 5h40
Magnetism 0.01 0.18 0.53 1.05 1.62 2.40
crystals per cell 16 17.8 17 23.6 20.3 28.8
Average size of crystals
(nm)19 19.4 20.3 22.7 26.3 33.1
Inter-crystal distance
(nm)127 75 56 41 29 19
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Implications
2. Magnetic pool
1. “classical” iron storage
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Magnetite biomineralization
• Magnetization really due to pure Magnetite ? Magnetite / Maghemite mixture?
• Is there any intermediate?
• What is the nature of the other pool of iron?
→ Mössbauer spectroscopy
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Magnetite or Maghemite
Magnetite : Maghemite :• Magnetite: – 2 Sextets (δ = 0.26 & δ = 0.67 mms-1)– a ratio of 1:2 for the Sextet above the Verwey
transistion (T > 119 K), 1:1 below
• Maghemite: – 1 Sextet (δ = 0.32 mms-1) at room temperature– At 4.2K the spectrum splits into two Sextets
(δ = 0.40 & δ = 0.48 mms-1)
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26 June 2006 Damien Faivre – Workshop on Complex Materials
-10 -5 0 5 100,75
0,80
0,85
0,90
0,95
1,00
Spectra Simulation A B Ferritin 4Fe4S FEII
Rel
ativ
e Tr
ansm
issi
on
velocity (mm/s)
Identification of the iron pools
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Isolated magnetosomes
-10 -9 -8 -7 -6 -5 -4 -3 -2 -1 0 1 2 3 4 5 6 7 8 9 100,80
0,82
0,84
0,86
0,88
0,90
0,92
0,94
0,96
0,98
1,00
spectrum simulation A B
Rel
ativ
e Tr
ansm
issi
on
velocity (mm/s)
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Dynamic of magnetite formation
-10 -8 -6 -4 -2 0 2 4 6 8 10
0,8
0,9
1,0
1,1
Rel
ativ
e Tr
ansm
issi
on
velocity (mm/s)
20h30m
20m40m60m95m125m155m215m
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Iron uptake in non-magnetic mutantwhole genome shotgun 482 kb WGS
50K 100K 150K 200K 250K 300K 350K 400K 450K
130 kb region
mms/mam genes transposase genes hypothetical genes genes with other attributed functions
130 kb core region
tRNA genes
220K 230K 240K 250K 260K 270K 280K 290K 300K 310K 320K 330K 340K 350K
MSR-1B lacks the complete genomic island
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Identification of the iron pools
-5 -4 -3 -2 -1 0 1 2 3 4 50,965
0,970
0,975
0,980
0,985
0,990
0,995
1,000
spectrum simulation 4Fe4S unknown Ferritin
Rel
ativ
e Tr
ansm
issi
on
velocity (mm/s)
The Ferritin-like component split into a magneticsextett at low temperature.
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Implications
• Different pools of iron:
1. Ferrous, ferritin, [Fe-S] and magnetite in WT, and no magnetite but unknown compounds in mutant
2. No ferric, no ferrihydrite
• Certainly no intermediate for magnetite biomineralization
• No trace of maghemite
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26 June 2006 Damien Faivre – Workshop on Complex Materials
1. Fe(III) cell exterior
or Fe(II) cell exterior
2. Fe(II) cell interior
+ ferritin
and [Fe-S]
3. Magnetite
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26 June 2006 Damien Faivre – Workshop on Complex Materials
But:Fe1. Ferritin
+ [Fe-S]
2. Magnetite
OR?
Fe 1. Ferritin + [Fe-S] 2. Magnetite
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26 June 2006 Damien Faivre – Workshop on Complex Materials
AcknowledgementsThe Magneto-Lab
E. SimpsonDr. R. Dunin Borkowski
Dr. N. Menguy
L. BoettgerProf. B. Matzanke
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26 June 2006 Damien Faivre – Workshop on Complex Materials
Thank you for your attention