manuel llano m.d., ph.d. - hb2504.utep.edu

25
1 March 1. 2020 Dear members of the selection committee, I am a tenured Associate Professor with over twenty years of expertise in basic research in virology and immunology acquired in culturally diverse settings including laboratories in Cuba, Sweden, Spain, and USA. I have published over 50 research articles, some of them in top peer-review journals such as Science, PNAS, Nature Medicine, PLOS Pathogens, JBC, etc. In the last 12 years I have secured over 3.2 million dollars in federal research funds, have taught over 3,000 students, graduated seven Ph.D. and four M.S. students, and served in a variety of committees at the Department, College, and University levels. Below is a copy of my CV. In order to facilitate your work I have included the page numbers that describe my accomplishments in aspects that are central for your department. RESEARCH (pages 3-13) Contribution to Science: Pages 3-5 Secured Federal Research Funds: Pages 6-7 Publications: Pages 8-14 TEACHING AND MENTORING (pages 15-20) Mentoring undergraduate and/or graduate research students: Pages 15-17 Curriculum development and developing interdisciplinary degree programs: Pages 16-18 Developing and implementing service learning and experiential learning in curricular and co-curricular settings: Page 18 Promoting and marketing academic programs in the Biology sector: Page 19 SERVICE AND LEADERSHIP (pages 21-23) Faculty and Post-doc Mentoring: Page 21 Building and supervising student organizations: Page 21 REFERENCES (pages 24-25) Best regards, Manuel Llano, M.D., Ph.D. Associate Professor Department of Biological Sciences University of Texas at El Paso email: [email protected]

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Page 1: Manuel Llano M.D., Ph.D. - hb2504.utep.edu

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March 1. 2020 Dear members of the selection committee,

I am a tenured Associate Professor with over twenty years of expertise in basic research in virology and

immunology acquired in culturally diverse settings including laboratories in Cuba, Sweden, Spain, and USA. I

have published over 50 research articles, some of them in top peer-review journals such as Science, PNAS,

Nature Medicine, PLOS Pathogens, JBC, etc. In the last 12 years I have secured over 3.2 million dollars in

federal research funds, have taught over 3,000 students, graduated seven Ph.D. and four M.S. students, and

served in a variety of committees at the Department, College, and University levels.

Below is a copy of my CV. In order to facilitate your work I have included the page numbers that describe

my accomplishments in aspects that are central for your department.

RESEARCH (pages 3-13)

Contribution to Science: Pages 3-5

Secured Federal Research Funds: Pages 6-7

Publications: Pages 8-14

TEACHING AND MENTORING (pages 15-20)

Mentoring undergraduate and/or graduate research students: Pages 15-17

Curriculum development and developing interdisciplinary degree programs: Pages 16-18

Developing and implementing service learning and experiential learning in curricular and co-curricular

settings: Page 18

Promoting and marketing academic programs in the Biology sector: Page 19

SERVICE AND LEADERSHIP (pages 21-23)

Faculty and Post-doc Mentoring: Page 21

Building and supervising student organizations: Page 21

REFERENCES (pages 24-25)

Best regards,

Manuel Llano, M.D., Ph.D.

Associate Professor

Department of Biological Sciences

University of Texas at El Paso

email: [email protected]

Page 2: Manuel Llano M.D., Ph.D. - hb2504.utep.edu

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Manuel Llano M.D., Ph.D.

Associate Professor (Tenured)

Biological Sciences Department

The University of Texas at El Paso CONTACT INFORMATION

Office Address: Biosciences Building. Room 3144. 500 University Ave. El Paso, TX, 79968

Phone: 915-342-4898 (Cell phone). 915-747-6941 (Office).

Email: [email protected]

EDUCATION

Ph. D., Universidad Autonoma de Madrid, Spain, 2000. Major: Molecular Biology

Residency in Clinical Biochemistry, Universidad de La Habana, School of Medicine, Cuba, 1992.

M.D., Universidad de La Habana, School of Medicine, Cuba, 1987.

POSITIONS

2000-2006: Research Associate, Molecular Medicine Department, Mayo Clinic. Rochester, MN.

2006-2012: Assistant Professor (tenure track), Biological Sciences Department, The University of

Texas at El Paso. El Paso, TX.

2012-present: Associate Professor (tenure), Biological Sciences Department, The University of Texas

at El Paso. El Paso, TX.

HONORS (last ten years)

2016: Outstanding Performance Award. Research and Sponsored Programs. The University of Texas

at El Paso

2012: Outstanding Performance Award. Research and Sponsored Programs. The University of Texas

at El Paso

2008: Outstanding Performance Award. Research and Sponsored Programs. The University of Texas

at El Paso

SUMMARY

I am a tenured Associate Professor with over twenty years of expertise in basic research in virology and

immunology acquired in culturally diverse settings including laboratories in Cuba, Sweden, Spain, and USA. I

have published over 50 research articles, some of them in top peer-review journals such as Science, PNAS,

Nature Medicine, PLOS Pathogens, JBC, etc. In the last 12 years I have secured over 3.2 million dollars in

federal research funds, have taught over 3,000 students, graduated seven Ph.D. and four M.S. students, and

served in a variety of committees at the Department, College, and University levels.

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RESEARCH

CONTRIBUTIONS TO SCIENCE

1. Fundamental role of HLA-E in the regulation of natural killer (NK) cells through the interaction with

CD94/NKG2 receptors. Functional regulation of NK cells occurs through the interaction of HLA class I

molecules in target cells and inhibitory or activatory receptors on the NK cell. The most abundant of these

receptors is formed by association of CD94 with different members of NKG2 forming activatory and

inhibitory receptors. At the time that I started my Ph.D. training in the laboratory of Miguel Lopez-Botet,

Universidad Autonoma de Madrid, CD94/NKG2 receptors were considered to functionally interact with a

broad group of HLA class I molecules, including several members of the three classical HLA class I

molecules and also the non-classical class I molecule HLA-G. My research completely changed this

parading by identifying HLA-E as the sole ligand for the CD94/NKG2 receptors (Published in Proc. Natl.

Acad. Sci. U.S.A). In addition, these findings identified a sensing mechanism that mine and other’s work

have demonstrated is exploited by pathogenic viruses to evade NK cells recognition. During my tenure at

the Lopez-Botet lab, I also evidenced the functional relevance of HLA-E-bound peptides in the interaction

with CD94/NKG2.

Selected publications

1. Lee N.&; Llano M.&; Carretero M.; Ishitani A.; Navarro F.; Lopez-Botet M., Geraghty D. HLA-E is a major

ligand for the natural killer inhibitory receptor CD94/NKG2A. Proc. Natl. Acad. Sci. U.S.A. 95:5199-5204,

1998. & shared first authorship.

2. Llano M.; Lee N.; Navarro F.; Garcia P.; Albar J.P.; Geraghty D.E., Lopez-Botet M. HLA-E-bound peptides

influence recognition by inhibitory and triggering CD94/NKG2 receptors: preferential response to an HLA-G-

derived nonamer. Eur. J. Immunol. 28:2854-2863, 1998.

3. Garcia P., Llano M., de Heredia A.B., Willberg C.B., Caparros E., Aparicio P., Braud V.M., Lopez-Botet M.

Human T cell receptor-mediated recognition of HLA-E. Eur. J. Immunol. 32:936-944, 2002.

4. Llano M., Guma M., Ortega M., Angulo A., Lopez-Botet M. Differential effects of US2, US6 and US11

human cytomegalovirus proteins on HLA class Ia and HLA-E expression: impact on target susceptibility to

NK cell subsets. Eur J Immunol. 33:2744-2754, 2003.

2. Fundamental role of LEDGF/p75 in HIV-1 DNA integration and integration site selection. Between

2000 and 2006, I was a Research Associate at the laboratory of Eric Poeschla, Mayo Clinic, leading a

research project devoted to the characterization of cellular cofactors of HIV-1 replication. I defined the

fundamental role of LEDGF/p75 in HIV-1 DNA integration (published in Science), mapped functional

domains in the protein, and identified the molecular mechanism of action. In collaboration with the Bushman

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lab, University of Pennsylvania, we also demonstrated the role of LEDGF/p75 in promoting integration within

actively transcribed genes (published in Nature Medicine).

Selected publications

1. Llano M., Vanegas M., Fregoso O., Saenz D., Chung S., Peretz M., Poeschla E.M. LEDGF/p75

determines cellular trafficking of diverse lentiviral but not murine oncoretroviral integrase proteins and is a

component of functional lentiviral preintegration complexes. J Virol. 78:9524-9537. 2004.

2. Ciuffi A., Llano M., Poeschla E.M., Marshall H., Hoffman C., Shinn P., Hannenhalli S., Ecker J., Bushman

F. A role for LEDGF/p75 in targeting HIV DNA integration. Nature Medicine. 11:1287-1289, 2005.

3. Llano M., Saenz D.T., Meehan A., Wongthida P., Peretz M., Walker W.H., Teo W., and Poeschla E.M.. An

essential role of LEDGF/p75 in HIV integration. Science. 2006 314 (5798):461-4.

4. Llano M., Vanegas M., Hutchins N., Thompson D., Delgado S., Poeschla E.M. Identification and

characterization of the chromatin-binding domains of the HIV-1 integrase interactor LEDGF/p75. J. Mol.

Biol. 360:760-773, 2006.

5. Llano M., Delgado S., Vanegas M., Poeschla E.M. LEDGF/p75 prevents proteasomal degradation of HIV-

1 integrase. J. Biol. Chem. 2004. 279: 55570-55577.

3. Identification of LEDGF/p75-associated proteins implicated in HIV-1 replication. Research from my

laboratory at The University of Texas at El Paso has broadened our understanding of the mechanism of

action of LEDGF/p75 in HIV-1 infection. We have demonstrated that LEDGF/p75 interacts with SSRP1

promoting viral integration and HIV-1 LTR-driven gene expression. These results suggest that HIV-1 has

evolved LEDGF/p75 dependency to gain access to interacting proteins. Furthermore, we have evidence that

the host impairs HIV-1 gene expression via the LEDGF/p75-interacting protein PARP-1. Pharmacological

inhibition and/or deficiency of PARP-1 significantly increases HIV-1 replication in immortal CD4+ T cells and

primary resting memory CD4+ T cells by enhancing provirus gene expression. The discovery of the

implication of LEDGF/p75-interacting proteins in HIV-1 replication suggest that host protein complexes,

rather than individual proteins, are central in viral pathogenesis. These findings identify host-host protein

interactions as relevant targets for the development of anti-viral drugs.

Selected publications

1. Gutierrez DA, Valdes L, Serguera C, Llano M. Poly (ADP-ribose) polymerase-1 silences retroviruses

independently of viral DNA integration or heterochromatin formation. J Gen Virol. 2016 Mar 30. [Epub

ahead of print]

2. Bueno MT, Reyes D, Valdes L, Saheba A, Urias E, Mendoza C, Fregoso OI, Llano M. Poly (ADP-ribose)

Polymerase-1 Promotes Transcriptional Repression of Integrated Retroviruses. J Virol. Mar; 87(5):2496-

507, 2013.

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3. Lopez AP, Kugelman JR, Garcia-Rivera J, Urias E, Salinas SA, Fernandez-Zapico ME, Llano M. The

Structure-Specific Recognition Protein 1 Associates with Lens Epithelium-Derived Growth Factor Proteins

and Modulates HIV-1 Replication. J. Mol. Biol. 2016 Jul 17; 428(14):2814-31.

4. Bueno MTD, Reyes D, and Llano M. LEDGF/p75 Deficiency Increases Deletions at the HIV-1 cDNA Ends.

Viruses. 2017 9 (9): 259.

5. Matysiak J., Lesbats P., Mauro E., Lapaillerie D., Dupuy JW., Lopez AP, Benleulmi MS., Calmels C.,

Andreola ML., Ruff M., Llano M., Delelis O., Lavigne M., Parissi V. Modulation of chromatin structure by the

FACT histone chaperone complex regulates HIV-1 integration. Retrovirology. 2017. 14(1):39.

6. Llano M. and Peña-Hernandez MA. Defining Pharmacological Targets by Analysis of Virus-Host Protein

Interactions. Adv Protein Chem Struct Biol. 2018. 111:223-242.

Manuscript submitted

1. Valdes L., Seong, C.S., Gutierrez D., Martinez, Z.S., Lopez A., Farran E., and Llano, M. Regulation of HIV-

1 replication by Poly (ADP-ribose) polymerase-1 in human CD4+ T cells. (Submitted to J. Virol)

4. Identification of novel HIV-1 maturation inhibitors. HIV-1 is released from infected cells as an immature,

non-infectious virion that then proceeds through maturation before gaining full infectivity. We have developed a

group of novel fullerene-derivatives that potently (IC50 0.3 μM) block HIV-1 infection at the maturation step.

These maturation inhibitors severely impair replication of HIV-1 resistant to multiple clinically-used protease

inhibitors as well as to experimental maturation inhibitors. We have two US patents on these maturation

inhibitors.

Selected publications

1. Castro, E. Martinez, Z.S.; Seong, CS; Cabrera-Espinoza, A.; Ruiz, M.; Hernandez, A.; Valdez, F.; Llano,

M*.; Echegoyen, L. Characterization of new cationic [70]fullerene derivatives as potent HIV-1 maturation

inhibitors. J. Med. Chem. 2016, 59, 10963. *Shared senior authorship.

2. Martinez ZS, Castro E, Seong CS, Cerón MR, Echegoyen L, Llano M. Fullerene Derivatives Strongly

Inhibit HIV-1 Replication by Affecting Virus Maturation without Impairing Protease Activity. Antimicrob

Agents Chemother. 2016, 60 (10) 5731-41.

5. Discovery of Flaviviruses restriction factors. Flaviviruses include relevant human and animal pathogens

as well as bioterrorism agents. Among them are West Nile Virus, Zika Vius, and Dengue Virus for which no

vaccine or specific treatment have been developed yet. We have discovered that the host protein Schlafen 11

restricts replication of these flaviviruses by altering viral fitness.

1. Valdez F., Salvador J., Palermo, P., Mohl J.E., Hanley, K.A., Watts, D., and Llano M. Schlafen 11 Restricts

Flavivirus Replication. (J. Virology, 93 (15): 104-19. 2019).

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RESEARCH SUPPORT

ONGOING RESEARCH SUPPORT

1. SC1GM115240- Llano (PI)

NIH-NIAID “Role of PARP-1 in HIV-1 latent infection” ($ 1,400,000.00)

Funding agent: NIH-NIAID

Goal: To determine the role of PARP-1 in HIV-1 latency and replication.

Role: P.I. M. Llano (02/01/2016 - 04/30/2020)

2. Fullerene inhibitors of HIV-1, LTAUSA17061.

Funding agent: The Ministry of Education, Youth and Sports, Program Inter-excellence

Goal: Characterization of fullerene-derived compounds as inhibitors of HIV-1 maturation.

Role: Co-P.I. M. Llano. P.I. Michaela Rumlová, PhD, Department of Biotechnology, UCT Prague.

(2017 – 2019).

3. Study of the role of capsid protein in early phase of HIV-1 replication cycle using the newly

identified compounds stabilizing capsid complexes, 17-25602S

Funding agent: Czech Science Foundation (GACR)

Goal: Characterization of fullerene-derived compounds as inhibitors of HIV-1 maturation.

Role: Co-P.I. M. Llano. P.I. Michaela Rumlová, PhD, Department of Biotechnology, UCT Prague.

(2017 – 2019)

COMPLETED RESEARCH SUPPORT

NIH-funded grants

1. SC1AI098238- Llano (PI)

“Regulation of the HIV cofactor activity of LEDGF/p75 by interacting proteins” ($ 1,430,895.00)

Funding agent: NIH- NIAID

Goal: To determine the role of LEDGF/p75-interacting proteins in HIV-1 replication.

Role: PI. (07/01/2011 – 09/30/2015)

2. SC2GM082301-Llano (PI)

"Molecular Mechanism of HIV-1 DNA integration.," ($ 322,440.00, plus $ 84,844.00 supplement).

Funding agent: NIH-NIGMS

Goal: To determine the mechanism of LEDGF/p75 in HIV-1 integration.

Role: PI. (03/12/2008 – 02/28/2011)

3. NIH R01- Kan-Mitchell (PI)

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“Mapping novel subdominal B*5701 epitopes in conserved regions of the HIV

Proteome”

Funding agent: NIH-NIAID

Goal: To identify and characterize novel HIV epitopes as vaccine candidates.

Role: Collaborator. (09/01/08 - 08/31/2012)

The University of Texas at El Paso intramural grants

1. Llano and Echegoyen (Co-PIs)

"Synthesis and Mechanistic Characterization of Novel Fullerene Derivatives as Anti-HIV Agents”

($ 25,000.00)

Funding agent: The University of Texas at El Paso. College of Science. Multidisciplinary Pilot Project

Program.

Goal: To determine the anti-HIV-1 activity of novel fullerene derivatives and define their mechanism of

action.

Role: Co-PI (02/01/2014 – 02/01/2015)

2. Llano and Watts (Co-PIs)

"Role of innate immune mechanisms targeting enveloped and AT-rich genome viruses in West Nile Virus

infection" ($ 25,000.00).

Funding agent: The University of Texas at El Paso. College of Science. Multidisciplinary Pilot Project

Goal: To define the role of tetherin and Schlafen 11 in the replication of West Nile Virus.

Role: Co-PI (02/01/2013 - 02/01/2014)

3. Llano (PI)

"Role of SUMOylation of LEDGF/p75 in HIV infection" ($5,000.00.)

Funding agent: The University of Texas at El Paso. University Research Institute Grant.

Goal: To evaluate the impact of SUMOylation in the role of LEDGF/p75 in HIV-1 infection.

Role: PI (01/01/2009 – 12/31/2009)

4. Llano (PI)

"Molecular mechanism of LEDGF/p75 in HIV integration ($4,895.00.)

Goal: To evaluate the chromatin tethering role of LEDGF/p75 in HIV-1 DNA integration.

Funding agent: The University of Texas at El Paso. University Research Institute Grant.

Role: PI (01/01/2006 – 12/31/2006)

As a member of the Infectious Disease and Immunology Cluster of the Border Biomedical Research Center of

The University of Texas at El Paso, I have contributed with my research to two rounds of competitive renewals

(2008-2012 and 2013-2017) of the National Institute on Minority Health and Health Disparities-funded research

grant ($14.4 M, five years) that support research in diseases that are overrepresented in minority groups.

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PEER-REVIEWED PUBLICATIONS https://scholar.google.com/citations?hl=en&view_op=list_works&gmla=AJsN-F7rgr0N4MGXh1NmvLmnioyqKq1T_JDTSPsUR32z4BjHLdZmFsQ6ULRLR6cyXQ4SI5k1Rz2VwXBfhGEJEtqk20WbftJOyg&user=BdM_9REAAAAJ http://www.ncbi.nlm.nih.gov/sites/myncbi/manuel.llano.1/bibliography/43960353/public/?sort=date&direction=ascending.

Original papers

(*Shared senior authorship; **Undergraduate and & Graduate Students in senior-authored papers)

1. Valdez F. &, Salvador J. **, Palermo, P. &, Mohl J.E. &, Hanley, K.A., Watts, D., and Llano M. Schlafen

11 Restricts Flavivirus Replication. J Virol. 2019 93(15): 104-119

2. Píchalová R, Füzik T, Vokatá B, Rumlová M, Llano M, Dostálková A, Křížová I, Ruml T, and Ulbrich P.

Conserved cysteines in Mason-Pfizer monkey virus capsid protein are essential for infectious mature

particle formation. Virology. 2018. 521:108-117

3. Bueno MTD, Reyes D, and Llano M. LEDGF/p75 Deficiency Increases Deletions at the HIV-1 cDNA

Ends. Viruses. 2017 9 (9): 259.

4. Matysiak J., Lesbats P., Mauro E., Lapaillerie D., Dupuy JW., Lopez AP&, Benleulmi MS., Calmels C.,

Andreola ML., Ruff M., Llano M., Delelis O., Lavigne M., Parissi V. Modulation of chromatin structure

by the FACT histone chaperone complex regulates HIV-1 integration. Retrovirology. 2017. 14(1):39.

5. Castro, E&. Martinez, Z.S. &; Seong, CS; Cabrera-Espinoza, A.; Ruiz, M.; Hernandez, A.; Valdez, F. &;

Llano, M*.; Echegoyen, L. Characterization of new cationic [70]fullerene derivatives as potent HIV-1

maturation inhibitors. J. Med. Chem. 2016, 59, 10963.

6. Martinez ZS&, Castro E&, Seong CS, Cerón MR, Echegoyen L, Llano M. Fullerene Derivatives

Strongly Inhibit HIV-1 Replication by Affecting Virus Maturation without Impairing Protease Activity.

Antimicrob Agents Chemother. 2016. 60 (10) 5731-41.

7. Lopez AP&, Kugelman JR&, Garcia-Rivera J&, Urias E**, Salinas SA**, Fernandez-Zapico ME, Llano

M. The Structure-Specific Recognition Protein 1 Associates with Lens Epithelium-Derived Growth

Factor Proteins and Modulates HIV-1 Replication. J. Mol. Biol. 2016. 428(14):2814-31.

8. Gutierrez DA&, Valdes L&, Serguera C, Llano M. Poly(ADP-ribose) polymerase-1 silences retroviruses

independently of viral DNA integration or heterochromatin formation. J. Gen. Virol. 2016. 97(7):1686-

92. PMID: 27028089

9. Pope, W., Bowman, C., Russell, D., Hatfull, Llano M# et al. Whole genome comparison of a large

collection of mycobacteriophages reveals a continuum of phage genetic diversity. (ed., vol. 4). eLife

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2015. http://elifesciences.org/content/4/e06416. #This is a report of a large set of data contributed by a

large number of authors from several academic institutions in USA. I am not the senior author, but a co-

author in this paper.

10. Leitz J, Reuschenbach, M, Lohrey C, Honegger A, Accardi R, Tommasino M, Llano M, von Knebel

Doeberitz M, Hoppe-Seyler K, and Hoppe-Seyler F Oncogenic Human Papillomaviruses Activate the

Tumor-Associated Lens Epithelial-Derived Growth Factor (LEDGF) Gene. PLOS Pathogens. 2014.

10(3): e1003957.

11. Bueno MT&, Reyes D&, Valdes L, Saheba A**, Urias E**, Mendoza C**, Fregoso OI, Llano M. Poly

(ADP-ribose) Polymerase-1 Promotes Transcriptional Repression of Integrated Retroviruses. J Virol.

2013. 87(5):2496-507

12. Astiazaran P**, Bueno MT&, Morales E&, Kugelman JR&, Garcia-Rivera J&, Llano M. HIV-1 integrase

modulates the interaction of the HIV-1 cellular cofactor LEDGF/p75 with chromatin. Retrovirology.

2011. 8:27

13. Bueno TDM&, Garcia-Rivera J&, Kugelman JR&, Morales E& and Llano M. SUMOylation of lens

epithelium-derived growth factor/p75 negatively affects its transcriptional activity on the heat shock

protein 27 promoter. J. Mol. Biol. 2010. 399(2): 221–239.

14. Llano M, Morrison J, Poeschla EM. Virological and Cellular Roles of the Transcriptional Coactivator

LEDGF/p75. Curr Top Microbiol Immunol. 339:125-46. 2010

15. Garcia-Rivera J&, Bueno MT&, Morales E&, Kugelman JR&, Rodriguez DF&, Llano M. Implication of

Serine Residues 271, 273 and 275 in the HIV-1 Cofactor Activity of LEDGF/p75. J Virol. 2010.

84(2):740-52.

16. Meehan AM, Saenz DT, Morrison JH, Garcia-Rivera J, Peretz M, Llano M, Poeschla EM. LEDGF/p75

proteins with alternative chromatin tethers are functional HIV-1 cofactors. PLoS Pathog. 2009.

5(7):e1000522.

17. Miest T, Saenz D, Meehan A, Llano M, Poeschla EM. Intensive RNAi with lentiviral vectors in

mammalian cells. Methods. 2009. 47(4):298-303.

18. Llano, M, Gaznick N, Poeschla EM. Rapid, controlled and intensive lentiviral vector-based RNAi.

Methods Mol Biol. 2009. 485:257-70.

19. Marshall HM, Ronen K, Berry C, Llano M, Sutherland H, Saenz D, Bickmore W, Poeschla EM,

Bushman F. Role of PSIP1/LEDGF/p75 in Lentiviral infectivity and integration targeting. PLoS ONE

2007. 2(12): e1340 2007

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20. Llano M., Saenz D.T., Meehan A., Wongthida P., Peretz M., Walker W.H., Teo W., and Poeschla E.M..

An essential role of LEDGF/p75 in HIV integration. Science. 2006. 314 (5798):461-4.

21. Llano M., Vanegas M., Hutchins N., Thompson D., Delgado S., Poeschla E.M. Identification and

characterization of the chromatin-binding domains of the HIV-1 integrase interactor LEDGF/p75. 2006.

J. Mol. Biol. 360:760-773.

22. Ciuffi A., Llano M., Poeschla E.M., Marshall H., Hoffman C., Shinn P., Hannenhalli S., Ecker J.,

Bushman F. A role for LEDGF/p75 in targeting HIV DNA integration. Nature Medicine. 2005. 11:1287-

1289.

23. Vanegas M., Llano M., Delgado S., Thompson D., Peretz M., Poeschla E.M. Identification of the

LEDGF/p75 HIV-1 integrase-interaction domain and NLS reveals NLS-independent chromatin

tethering. J. Cell. Sci. 2005. 118:1733-1743.

24. Llano M., Vanegas M., Fregoso O., Saenz D., Chung S., Peretz M., Poeschla E.M. LEDGF/p75

determines cellular trafficking of diverse lentiviral but not murine oncoretroviral integrase proteins and is

a component of functional lentiviral preintegration complexes. 2004 J Virol. 78:9524-9537.

25. Llano M., Delgado S., Vanegas M., Poeschla E.M. LEDGF/p75 prevents proteasomal degradation of

HIV-1 integrase. J. Biol. Chem. 2004. 279: 55570-55577.

26. Garcia P., De Heredia A.B., Bellon T., Carpio E., Llano M., Caparros E., Aparicio P., Lopez-Botet M.

Signaling via CD70, a member of the TNF family regulates T cell functions. J. Leukoc. Biol. 2004.

76:263-270.

27. Nguyen K.-L., Llano M., Akari H., Miyagi E., Poeschla E.M., Strebel K., Bour S. Codon optimization of

the HIV-1 vpu and vif genes stabilizes their messenger RNA and allows for highly efficient Rev-

independent expression. Virology. 2004. 319:163-175.

28. Llano M., Guma M., Ortega M., Angulo A., Lopez-Botet M. Differential effects of US2, US6 and US11

human cytomegalovirus proteins on HLA class Ia and HLA-E expression: impact on target susceptibility

to NK cell subsets. Eur J Immunol. 2003. 33: 2744-2754.

29. Llano M., Kelly T., Vanegas M., Peretz M., Peterson T.E., Simari R.D., Poeschla E.M. Blockade of

human immunodeficiency virus type 1 expression by caveolin-1. J Virol. 2002. 76:9152-9164.

30. Garcia P., Llano M., de Heredia A.B., Willberg C.B., Caparros E., Aparicio P., Braud V.M., Lopez-Botet

M. Human T cell receptor-mediated recognition of HLA-E. Eur. J. Immunol. 2002. 32:936-944.

31. Matamoros N., Mila J., Llano M., Balas A., Vicario J.L., Pons J., Crespi C., Martinez N., Iglesias-

Alzueta J., Lopez-Botet M. Molecular studies and NK cell function of a new case of TAP2 homozygous

human deficiency. Clin. Exp. Immunol. 2001. 125:274-282.

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32. Sancho D., Nieto M., Llano M., Rodriguez-Fernandez J.L., Tejedor R., Avraham S., Cabanas C.,

Lopez-Botet M., Sanchez-Madrid F. The tyrosine kinase PYK-2/RAFTK regulates natural killer (NK)

cell cytotoxic response and is translocated and activated upon specific target cell recognition and

killing. J. Cell Biol. 200. 149:1249-1262.

33. Carretero M., Llano M., Navarro F., Bellon T., Lopez-Botet M. Mitogen-activated protein kinase activity

is involved in effector functions triggered by the CD94/NKG2-C NK receptor specific for HLA-E. Eur J

Immunol. 2000. 30:2842-2848.

34. Bellon T.; Heredia A.B.; Llano M.; Minguela A.; Rodriguez A.; Lopez-Botet M., Aparicio P. Triggering

of effector functions on a CD8+ T cell clone upon the aggregation of an activatory CD94/kp39

heterodimer. 1999. J. Immunol. 162:3996-4002.

35. Navarro F.; Llano M.; Bellon T.; Colonna M.; Geraghty D.E., Lopez-Botet M. The ILT2 (LIR1) and

CD94/NKG2A NK cell receptors respectively recognize HLA-G1 and HLA-E molecules co-expressed on

target cells. Eur. J. Immunol. 1999. 29:277-283.

36. Llano M.; Lee N.; Navarro F.; Garcia P.; Albar J.P.; Geraghty D.E., Lopez-Botet M. HLA-E-bound

peptides influence recognition by inhibitory and triggering CD94/NKG2 receptors: preferential response

to an HLA-G-derived nonamer. Eur. J. Immunol. 1998. 28:2854-2863.

37. Carretero M.; Palmieri G.; Llano M.; Tullio V.; Santoni A.; Geraghty D.E., Lopez-Botet M. Specific

engagement of the CD94/NKG2A killer inhibitory receptor by the HLA-E class Ib molecule induces

SHP-1 phosphatase recruitment to tyrosine-phosphorylated NKG2A: evidence for receptor function in

heterologous transfectants. Eur. J. Immunol. 1998. 28:1280-1291.

38. Lee N.; Llano M; Carretero M.; Ishitani A.; Navarro F.; Lopez-Botet M., Geraghty D. HLA-E is a major

ligand for the natural killer inhibitory receptor CD94/NKG2A. Proc. Natl. Acad. Sci. U.S.A. 1998.

95:5199-5204. Shared first author.

39. Perez-Villar J.J.; Melero I.; Navarro F.; Carretero M.; Bellon T.; Llano M.; Colonna M.; Geraghty D.,

Lopez-Botet M. The CD94/NKG2A inhibitory receptor complex is involved in natural killer cell-mediated

recognition of cells expressing HLA-G1. J. Immunol. 1997. 158: 5736-5743.

40. Colonna M.; Navarro F.; Bellon T.; Llano M.; Garcia P.; Samaridis J.; Angman L.; Cella M., Lopez-

Botet M. A common inhibitory receptor for major histocompatibility complex class I molecules on

human lymphoid and myelomonocytic cells. J. Exp. Med. 1997. 186: 1809-1818.

41. Pérez-Villar JJ, Melero I, Navarro F, Carretero M, Bellón T, Llano M, Colonna M, Geraghty DE, López-

Botet M.The CD94/NKG2-A inhibitory receptor complex is involved in natural killer cell-mediated

recognition of cells expressing HLA-G1. J. Immunol. 1997. 158(12):5736-43.

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42. Fernández de Cossío ME, Ohlin M, Llano M, Selander B, Cruz S, del Valle J, Borrebaeck CA. Human

monoclonal antibodies against an epitope on the class 5c outer membrane protein common to many

pathogenic strains of Neisseria meningitidis. J. Infect Dis. 1992. 166(6):1322-8.

43. Hardy E, Ohlin M, Llano M. Enhanced ELISA sensitivity using TCA for efficient coating of biologically

active lipopolysaccharides or lipid A to the solid phase. J.Immunol Methods. 1994. 176(1):111-6.

Review papers

1. Llano M. and Peña-Hernandez MA**. Defining Pharmacological Targets by Analysis of Virus-Host

Protein Interactions. Adv Protein Chem Struct Biol. 2018. 111:223-242

2. Llano M, Morrison J, and Poeschla EM. Virological and Cellular Roles of the Transcriptional

Coactivator LEDGF/p75. Curr Top Microbiol Immunol. 2010;339:125-46.

3. Lopez-Botet M., Llano M., Ortega M. Human cytomegalovirus and natural killer-mediated surveillance

of HLA class I expression: a paradigm of host-pathogen adaptation. Immunol. Rev. 181:193-202, 2001

4. Lopez-Botet, M.; Bellon, T.; Llano, M; Navarro, F.; Garcia, P. and de Miguel, M. Paired inhibitory and

triggering NK cell receptors for HLA class I molecules. Hum. Immunol. 61:7-17, 2000.

5. Lopez-Botet, M.; Llano, M.; Navarro, F.; and Bellon, T. NK cell recognition of non-classical HLA class I

molecules. Semin. Immunol. 12:109-119, 2000.

6. Lopez-Botet, M.; Navarro, F.; Llano, M. and Garcia, P. NK cell mediated recognition of HLA class Ib

molecules: role of CD94/NKG2 receptors. J. Reproduct. Immunol. 43:167– 3, 1999.

7. Lopez-Botet, M.; Navarro, F. and Llano, M. How does NK cells sense the expression of HLA-G class

Ib molecules? Semin. Cancer Biol. 9:19-26, 1999.

8. López-Botet M, Carretero M, Bellón T, Pérez-Villar JJ, Llano M, Navarro F. The CD94/NKG2 C-type

lectin receptor complex. Curr Top Microbiol Immunol. 1998;230:41-52.

9. López-Botet M, Carretero M, Bellón T, Pérez-Villar JJ, Llano M, Navarro F. The CD94/NKG2C-type

lectin receptor complex in recognition of HLA class I molecules. Res Immunol. 1997 Mar-

Apr;148(3):155-9.

10. López-Botet M, Pérez-Villar JJ, Carretero M, Rodríguez A, Melero I, Bellón T, Llano M, Navarro F.

Structure and function of the CD94 C-type lectin receptor complex involved in recognition of HLA class I

molecules. Immunol Rev. 1997 Feb;155:165-74.

11. López-Botet M, Carretero M, Pérez-Villar J, Bellón T, Llano M, Navarro F.The CD94/NKG2 C-type

lectin receptor complex: involvement in NK cell-mediated recognition of HLA class I molecules.

Immunol Res. 1997;16(2):175-85.

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INVITED SPEAKER TALKS

1. Global Health and Emerging Pathogens Institute at Icahn School of Medicine at Mount Sinai. “Schlafen

Proteins Restrict Viral Replication”. New York City (2019).

2. Baylor University. Biological Sciences Department. “Regulation of the cellular tRNA pool and its

implication for viral infections and cancer therapy”. Waco, TX, (2019).

3. Universidad Autonoma de Ciudad Juarez. “Schlafen 11 Restricts Flavivirus Replication”. Ciudad

Juarez, Chihuahua, Mexico (2018).

4. Infectious Disease Symposium: HIV immunopathogenesis and Gene Therapy, "Cellular Factors

Implicated in HIV-1 replication," Texas Tech University, Paul L. Foster School of Medicine. El Paso, TX

(2013).

5. Loma Linda School of Medicine "Role of LEDGF/p75 in HIV infection" Loma Linda, CA (2010).

6. The University of Alabama at Birmingham. "Cellular cofactors of HIV infection". Birmingham, AL (2012).

7. SACNAS National Conference. “Role of Cellular Factors in HIV-1 replication" in San Antonio, TX (2013)

INTELLECTUAL PROPERTY

1. Provisional Patent Application: 1,3-Dipolar[70] Fulleropyrrolidinium Iodide Derivatives by Luis A.

Echegoyen, Manuel Llano, Edison A Castro Portillo and Zachary Martinez (UTEP0022USP1 / 2015-

023)

2. Provisional Patent Application: [1,3]-Thiazine-Fulleropyrrolo Derivatives of C60 and C70 as HIV

Inhibitor Agents by Luis A. Echegoyen, Danisha Rivera-Nazario, Manuel Llano, Edison A Castro Portillo

and Zachary Martinez (UTSE.P0171US.P1 / 2015-045)

3. Provisional Patent Application: Screening System for detecting Inhibitors of HIV Integrase-LEDGF/p75

Interaction by Manuel Llano and Elisa Morales.

PRESENTATIONS AT RESEARCH MEETINGS

Only selected presentations at international meetings in the last nine years are listed. **Undergraduate

and & Graduate Students

1. Gutierrez, D. &, Reyes, D. &, Bueno, M. &, Llano, M., Retroviruses. Cold Spring Harbor Laboratory

Meeting., "A SUMOylation-deficient LEDGF/p75 mutant exhibits reduced HIV-1 cofactor activity".

(Poster). Cold Spring Harbor Laboratory, New York. (May 2012).

2. Llano, M., Bueno, M. &, Reyes, D. &, Saheba, A. **, Urias, E. **, Mendoza, C. **, Rodriguez, L. &,

Fregoso, O. I., Retroviruses. Cold Spring Harbor Laboratory Meeting., "Poly (ADP-ribose) Polymerase-

1 Promotes Transcriptional Repression of Integrated Retroviruses". (Poster). (Oral presentation). Cold

Spring Harbor Laboratory, New York. (May 2012).

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3. Garcia-Rivera JA&, Bueno MT&, Morales E&, Kugelman JR&, Rodriguez DF&, Llano M. Implication of

Serine Residues 271, 273 and 275 in the HIV-1 Cofactor Activity of LEDGF/p75. (Poster). 3rd

International Conference on Retroviral Integrase. MBL Woods Hole, Boston (Sept. 14-18. 2008)

4. Bueno MT&, Garcia-Rivera JA&, Morales E&, Kugelman JR&, Cortez J**, Rosas-Acosta G, Llano M.

SUMOylation of LEDGF/p75 influences the subnuclear localization of HIV-1 integrase. (Poster). 3rd

International Conference on Retroviral Integrase. MBL Woods Hole, Boston (Sept. 14-18. 2008)

5. Meehan AM, Saenz DT, Morrison JH, Garcia-Rivera JA&, Peretz M, Llano M, Poeschla EM.

LEDGF/p75 proteins with alternative chromatin tethers are functional HIV-1 cofactors. Retroviruses

meeting. (Oral presentation). Cold Spring Harbor Laboratory. (May 2007)

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TEACHING AND MENTORING

TEACHING PHILOSOPHY

Professional life has many routes and alternatives. In many occasions, one’s decision to take a particular route

is not well informed. Useful career information is often contaminated with futile information or even hidden in

unsuspected places. To succeed, it is not only necessary to work hard, but also to do it in the right direction.

But which is the right direction? This dilemma is commonly encountered in our professional lives, “I have

decided to succeed, I am determined to work very hard, but where should I head out to reach my goals?” At

this point what is needed is a mentor. This is a more experienced person who will altruistically guide you

through your professional life decisions, helping you to conduct your efforts in the right direction. A mentor also

has to be a role model that inspires others. Therefore, professional excellence in each of our duties is

necessary to become a mentor.

My teaching philosophy is fully permeated by my interest in being an effective mentor for my students. As a

teacher, I guide my students to learn what will be important to build their professional future. My goal in the

classroom is that students understand, rather than memorize, the information necessary to build further

knowledge. In order to do this, I motivate them by transmitting the passion that I feel for the subject and appeal

to their curiosity by using real life examples and logical analysis during the lectures.

In addition, I teach the students the philosophy of “you can do it.” This motivation helps them acquire

knowledge in the classroom but, more importantly, helps them overcome obstacles in their future professional

and personal lives. To effectively imprint this philosophy in my students, I challenge them with reasoning

questions that promote them to think and realize that they can come up with good ideas to solve real life

problems. During these exercises, I always insist, “Trust me, you can do it. Think of how this problem can be

solved.” Another tool I use to cultivate this philosophy in my students is to invite guest speakers to the

classroom. These professionally successful individuals serve as role models and inspire self-confidence in my

students.

I also consider that my role as a teacher does not end in the classroom and is not limited to spreading

knowledge about microbiology. Students from the course, from the laboratory and in general from the

Department seek advice from me to solve strategic problems in their professional life and this greatly satisfies

me. I have found that by investing a little bit of extra time, I can have a big impact in the academic progress of

students.

Mentoring undergraduate and graduate research students. I have mentored over 50 undergraduate

students in my research laboratory (Table 1) and eight are under my guidance currently. Typically, I recruit

these students from my undergraduate courses. In most of the cases, I have secured funding for these

students through UTEP fellowships such as RISE, BURS, COURI, and MARK. Through these programs the

students present in at least one research meeting per year and many of them are authors in the lab

publications. Generally, I send them to competitive nation-wide summer research programs. Therefore, the

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research experience provided in my laboratory to these undergraduate students significantly increases their

competitiveness when applying for graduate or professional schools after obtaining their BS degrees.

My laboratory has graduated seven PhD and four master students (Table 2). These students authored at least

one publication from my laboratory. Then, the research experience provided in my laboratory to these

Table 1. Selected list of undergraduate students mentored in my research laboratory.

Student Mentoring dates School entered Comment

Alma Navarro 2007-2010 Southwest College of Naturopathic Medicine. Tempe, AZ

Damaris Rosado 2007-2010 Texas A&M Health Science Center College of Medicine

2009 Top Ten Senior Award. University of Texas at El Paso

Carlos Sanchez 2008-2011 Skirball Institute PhD Program. New York University

David M. Barry 2009-2014 PhD Program. UT Southwestern Medical Center

Paulina Astiazaran 2010-2015 University of Texas Medical School-Houston

First author in lab publication

Adarsh Saheba 2010-2015 Texas Tech University. School of Medicine

Co-author in lab publication

Melissa Spear 2010-2015 Biomedical Sciences PhD program. University of California, San Francisco

First author in manuscript in preparation

Elizabeth Aguilera 2010-2015 Molecular Microbiology PhD Program. UT Southwestern Medical Center

First author in manuscript in preparation

Crystal Mendoza 2010-2015 PhD program at Mayo Clinic Graduate School of Biomedical Sciences.

Co-author in lab publication

Ivan Y. Ramirez 2010-2012 Texas Tech University. School of Medicine

Andre F. Perez-Orozco

2011-2014 MD PhD program. Baylor College of Medicine

Sandra Andrea Salinas

2011-2014 MD PhD program. Baylor College of Medicine

Co-author in lab publication

Eduardo Urias 2011-2016 Texas Tech University. School of Medicine

Co-author in lab publication. First author in manuscript in preparation

Samuel Garcia 2013-2015 Texas Tech University. School of Medicine

Elias Farran 2014-2017 University of Texas Medical Branch at Galveston

Co-author in submitted lab publication

Cameron Torres 2014-2018 PhD Program. UT Southwestern Medical Center

First author in manuscript in preparation

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graduate students significantly increases their competitiveness when applying for post-doctoral positions and

job opportunities in both academy and industry. Currently I am training one PhD and three MS students.

In addition I have mentored other graduate students in the Department by participating as member of their

thesis committees (nine PhD and three MS students), directing the Graduate Student Seminar, and by serving

in the Graduate Student Advisory Committee (described in the Service section).

Curriculum Development of Graduate and Undergraduate Academic Programs. I was one of the seven

members of the curriculum development team that created the curriculum for the Bachelor of Science in

Cellular and Molecular Biochemistry (CBCH) at UTEP. This program places special emphasis in teaching

state-of-the-art biomedical research techniques better preparing our undergraduate students for jobs in the

biomedical sciences.

Furthermore, I developed the course Advanced Topics in Molecular Biochemistry (CBCH 4320) that has been

offered for seven consecutive semesters with an enrollment of over 30 students per semester. This is a team-

taught course in which both faculty and students engage in teaching. The participating faculty lecture and the

students present research papers suggested by the faculty.

I also developed the graduate level course Molecular Pathogenesis (BIOL 5344) that has now been offered for

seven consecutive semesters with an enrollment of approximately 7 students per semester. This is a journal

Table 2. Graduate students mentored in my laboratory.

PhD Student Mentoring dates Post-doctorate Comment Jeffrey Kugelman 2007-2010 United States Army

Medical Research Institute of Infectious Diseases

Currently an independent P.I. Author in three lab publications

Jose Garcia 2007-2010 The Scripps Research Institute.

Currently an independent P.I. Author in four lab publications

Murilo Bueno 2007-2010 McGill University, Montréal Author in four lab publications Zachary Martinez 2011-2015 University of Texas at El

Paso Author in two lab publications and two patents

Angelica Lopez 2011-2015 Science Lead at Booz Allen Hamilton Inc.

Author in one lab publication

Luis Valdes 2011-2015 Pharma Industry Author in one lab publication Federico Valdez 2013-2018 University of Texas at El

Paso Author in two lab publications

MS Student Mentoring dates Job secured Comment Elisa Morales 2007-2009 Technician at Texas Tech

Medical School Author in two lab publications

Daniel Reyes 2010-2013 Technician at United States Army Medical Research Institute of Infectious Diseases

Author in two lab publications

Denisse Gutierrez 2013-2016 Technician at The University of Texas at El Paso.

Author in one lab publication

Sara Garcia 2016-2018 Author in a manuscript in preparation

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club-type course that also engages students in teaching. Students select research papers to highlight a

particular topic; I introduce the topic by giving a lecture and then the students present the corresponding

papers.

As indicated above, Advanced Topics in Molecular Biochemistry and Molecular Pathogenesis are designed to

engage students in teaching and therefore challenge students to think critically and improve their presentation

skills.

Experience in developing and implementing service learning and experiential learning in curricular and

co-curricular settings. For the last six years, I co-directed a freshman undergraduate level research-driven

course funded by the Howard Hughes Medical Institute through their Science Education Alliance program

(BIOL 1107). This was the first course offered to undergraduates in the College of Sciences that implemented

experiential learning.

In this course, freshman students are recruited at college orientation based on their initial interest in research.

The motto that we use is “In this course you will work more than your peers for the same number of course

credits, but...you will participate in research”.

In this course we implemented a hybrid of the Freire/Dewey’s and Kolb's models of experiential learning. The

students are presented with the problem that there is a gap in our knowledge of bacteriophages infecting a

specific bacteria that grow ubiquitously in soil, they are taught the concept that bacteriophages require bacteria

for multiplication and therefore bacteriophages are expected to co-habit with bacteria. Based on this

information the students formulate the hypothesis that they will find bacteriophages in soil samples, they do the

required experimentation following specific protocols, analyze their results and arrive to conclusions. This

course is two semesters long. In the first semester (wet lab), the students isolate and characterize the

bacteriophages by electron microscopy and, in the second semester (dry lab), one of the bacteriophages is

sequenced and the students annotate the genetic features of the bacteriophage using specific software. At the

end of the first semester, the students present their findings in an in-class research symposium and the

bacteriophage best presented is selected for sequencing. In addition, the students present their work as a

poster at a local research symposium for undergraduates. At the end of the second semester, the students

submit their annotation to Genebank (for example, https://www.ncbi.nlm.nih.gov/nuccore/MH051255.1) and

present their work at a national research meeting organized by HHMI and in local research meetings.

In 2018, I developed a new freshman undergraduate research-driven course modeled after the BIOL 1107

course described above. This course is under the UTEP Freshman Year Research Intensive Sequence

program that is funded by the National Institutes of Health (BUILD) and the Howard Hughes Medical Institute

(PERSIST). The course has two parts, a research foundation course (BIOL 1107) followed by a research-

driven course (BIOL 1108). In these courses I also applied a hybrid of the Freire/Dewey’s and Kolb's models of

experiential learning.

Development of interdisciplinary degree programs. In 2018, I started an interdisciplinary degree

experience with the Biomedical Engineering program of the College of Engineering by accepting two of their

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graduate students to pursue M.S. degrees in my laboratory. Our goal is to provide these students with a

broader, multidisciplinary research experience.

Experience in promoting and marketing academic programs in the Biology sector. Since 2017, I have

served as the Director of Keelung Hong Graduate Research Fellowship Program. This month I created a Merit-

Based Tuition Waiver program with funds from this fellowship, as part of the development efforts for the growth

and success of the fellowship. Students are the workforce of academic research. Therefore, most competitive

Ph.D. programs provide tuition waivers in addition to monthly stipend in order to attract the best graduate

students. For example, roughly 25% of students pursuing Ph.D. received a tuition waiver in 2012, the latest

year that data is available. Unfortunately, in Texas, public institutions are not allowed to waive tuition.

Therefore, I have created this funding opportunity to attract better students to our Ph.D. program. I am planning

to advertise this opportunity by mailing an informative poster to Texas schools and by distributing flyers at

research meetings such as the Society for Advancement of Chicanos/Hispanics and Native Americans in

Science (SACNAS) and Annual Biomedical Research Conference for Minority Students (ABRCMS).

Faculty Development Courses (attended)

1. Workshop, "Creative Active Learning Experiences," STEM Research-Teaching Integration Program. The

University of Texas at El Paso. (December 8, 2012).

In addition, I have trained over 50 undergraduate students that have entered in Ph.D., M.D., and M.D./Ph.D.

programs in very competitive schools nation-wide. I have also graduated seven Ph.D. and four Master in

Science students. Six of the Ph.D. secured post-doctoral positions in prestigious institutions and two of them

are currently principal investigators at military-funded laboratories in USA. All the M.S. graduates have

secured jobs as technicians in research laboratories immediately after graduation and still hold them. Three

are in academia and one in a military-funded lab.

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Summary of teaching experience. I have taught over 3,200 students in laboratory- and classroom-based,

lower and higher division undergraduate and graduate courses (Table 3).

Table 3. Teaching experience summary.

Course Course Name Total

Enrollment Course

Type Semesters

taught Level Student’s

course evaluation

BIOL 1103 Introductory Biology Lab

43 TL 2 Undergrad N/A

BIOL 5344 Molecular Pathogenesis

51 L + S 7 Doctoral 4.8+/-.17 (4)

CBCH 4310 Techniques in Molecular

Biochemistry

72 L + S, TT

3 Undergrad N/A

CBCH 4320 Advanced Topics in Molecular

Biochemistry

204 L + S, TT

7 Undergrad 4.3+/- 0.5 (6)

MICR 2141 General Microbiology Lab

93 TL 5 Undergrad N/A

MICR 2330 Microorganisms and disease

73 L 2 Undergrad 4.95+/- 0.07 (2)

MICR 2340 General Microbiology 829 L 10 Undergrad 4.58+/- 0.3 (7)

MICR 2440 General Microbiology 1,592 L + TL 17 Undergrad 4.6+/- 0.28 (17)

BIOL 1107 Topics in Study of Life

124 RL 7 Undergrad 4.92+/- 0.07 (3)

BIOL 4398

Special Problems 63 RL 24 Undergrad N/A

BIOL 5302 Research in Biological Sciences

21 RL 11 Doctoral N/A

BIOL 5398 Thesis 11 M 7 Doctoral N/A BIOL 6X90

X=1-6 Independent

Research 11 M 46 Doctoral N/A

BIOL 6399 Dissertation 11 M 9 Doctoral N/A RSRC 4033 Undergraduate

Research 10 RL 4 Undergrad N/A

Period collected Fall 2006-Spring 2017 (3,208 students). Course types are Teaching laboratory (TL), Lecture (L), Seminar (S), Team Taught course (TT), Research-Driven Lab (RL), and mentoring (M). The maximum grade for the student’s course evaluations is 5. The number of semesters used to calculate the mean+/-SD of the student’s course evaluations are indicated in parentheses.

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SERVICE AND LEADERSHIP

I have served as chair or member of several committees at the Departmental, College, and University levels at

The University of Texas at El Paso (UTEP) as well as at Texas Tech University Health Sciences Center. A

detailed description of dates, committees and roles is available upon request.

SERVICE PHILOSOPHY

I consider service to the university and society as a whole to be one of my core responsibilities as a professor.

I focus my service on mentoring students and faculty, making strategic recommendations to guide them toward

their long term goals. I consider these recommendations essential since many students are poorly informed

about these matters until very late in their college studies. At this late point, students have limited chances to

improve their extracurricular activities and competitiveness. I also consider contributing to the community with

my professional expertise to be very important. In addition, service is always a learning opportunity to develop

leadership and organizational skills.

CONTRIBUTIONS TO SERVICE

Supporting student organizations: I have worked in coordination with the presidents of the Medical

Professions Organization of the College of Sciences and the Graduate Student Organization of the Biological

Sciences Department contributing with my professional expertise to these organizations. For example, I have

participated in training members for medical school admission interviews and in suggesting leaders in HIV-1

basic research to be invited as speakers to the Graduate Student Seminar that I direct. I have also been invited

as a speaker to the Mortar Board National College Senior Honor Society at UTEP.

Faculty and Post-doc Mentoring. I am the mentor of Dr. Anita Quintana an Assistant Professor in the

Department. I have oriented Dr. Quintana in preparing her Mentored Research Scientist Development Award

(K01 grant), scheduling classes, dealing with the Departmental issues and recruiting students to her lab.

In addition, as a member of the Department Advisory Committee, I have significantly contributed to implement

Departmental policies that guarantee balanced service and teaching load among the faculty, reviewed faculty’s

annual evaluations, advised faculty through their annual evaluations on how to improve in the areas of

research, teaching, and service. In this committee, I have also advised the Department chairman on

Departmental priorities and prepared the Departmental letter of support for faculty being promoted to Associate

and Full Professors.

I have also mentored post-doctoral fellows working in my laboratory, focusing on the development of

leadership and scientific writing skills. For example, I have organized the research projects in the lab such that

each post-doc directly led a research group formed by one graduate and several undergraduate students.

Under my guidance, the post-docs are also responsible for writing papers and aims in grant applications. Using

this approach, I mentored Dr. Chang-Soo Seong (2012-2016) who is now Lead Research Specialist at the

Winship Cancer Institute of Emory University. I am currently mentoring two other post-docs recruited last year.

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Faculty Recruitment. I have served in three search committees to recruit faculty in the areas of Ecology and

Evolution (2007), Cancer Research (2012-2013), and Genetics (2013-2014), chairing the latter. Importantly,

the Ecology and Evolutionary Biology researcher that was hired has since been promoted to a tenured

Associate Professor.

Scientific Committees. As an expert in cellular cofactors of HIV replication, I have served four times in the

past two years as a reviewer for the NIH in the AIDS Molecular and Cellular Biology Study Section, and special

emphasis panels Targeting Persistent HIV Reservoirs and Basic Research on HIV Persistence. I have also

served as a reviewer for grant applications from the American Foundation for AIDS Research (AmFAR, USA),

the K University Leuven (Belgium), the Research Foundation-Flanders (Belgium), and the Israel Science

Foundation.

I have also served as a reviewer for Microbiology textbooks from W.W. Norton & Company, and for articles

submitted to several research journals including PLOS Pathogens, J. Virology, Retrovirology, PLOS One,

Virology, Oncotarget, Future Virology, and Future Medicine.

In addition to being or having been Chair of the Dissertation Defense Committee of my eleven graduate

students, I am serving or have served as member of the Dissertation Defense Committee of twelve graduate

students (8 Ph.D., 4 M.S.) in the Departments of Biological Sciences (10) and Chemistry (1) of UTEP, and in

the Dissertation Defense Committee of a Ph.D. students in the Pasteur Institute (France).

Directing the Graduate Student Seminar. I have been the director of the Graduate Student Seminar of the

Pathobiology Ph.D. program in our Department for the last seven years. This is a progress report seminar in

which professors evaluate the student’s ability to present and defend their data and hypothesis, as well as

provide feedback about their graduation and publication plans. Therefore, this seminar greatly enhances the

student’s presentation and critical thinking skills, and contributes to guarantee their timely graduation.

Organizing Research Symposiums. I have been a member of three organizing committees that have

contributed to the successful organization of two national and one regional research symposiums. Particularly,

I was able to attract relevant speakers such as Stephen J. Russell, M.D., Ph.D. (Professor of Medicine and

Director of the Molecular Medicine Program at Mayo Clinic, 2009) and Eric M. Poeschla, M.D. (Professor of

Medicine, Tim Gill Endowed Research Chair and Head of the Division of Infectious Diseases at the University

of Colorado School of Medicine, 2011) to these meetings.

Dictating University and Departmental Policies. I have contributed to the mission of committees such as

the Institutional Review Board, the Faculty Senate, and the Department Advisory Committee.

The following is a selection of the committees that I have served in the last decade: PROFESSIONAL SERVICE

Ad Hoc reviewer for NIH in the AIDS Molecular and Cellular Biology Study Section, and special

emphasis panels Targeting Persistent HIV Reservoirs and Basic Research on HIV Persistence (2015-

present).

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Ad Hoc reviewer for Journal of Virology, PLOS Pathogens, Retrovirology, Virology, PLOS One,

Oncotarget , Journal Future HIV Therapy, and Future Medicine (2007 - present)

Ad hoc reviewer for Microbiology: An evolving Science. Slonczewski J.L. and Foster J.W. Editors W.W.

Norton & Company (2008 and 2013)

Ad hoc reviewer for grants applications to the Israel Science Foundation (2013)

Ad hoc reviewer for Postdoctoral Fellowship Research Foundation - Flanders (Belgium, 2009 and

2012)

Ad hoc reviewer for grants applications to the K University Leuven (Belgium, 2010)

Ad hoc reviewer for grants - The Foundation for AIDS Research (AmFAR, USA, 2009)

Committee Member for 3rd Annual Research Colloquium, Texas Tech University Health Sciences

Center (2009)

DEPARTMENTAL SERVICE

Chair Award Committee (2016-present)

Faculty mentor for Anita Quintana, Ph.D, Assistant Professor (2015-present)

Director Graduate Student Seminar (2010-present)

Member of the Advisory Committee (2012-2016)

Member of the Graduate School Selection Committee (2012-2014)

Member for Doctor of Philosophy (Ph.D.) in Cellular and Molecular Biochemistry committee (2010-

present)

Member for Cancer Biologist Search Committee (2012-2013)

COLLEGE SERVICE

Director of Keelung Hong Graduate Research Fellowship Program (2017-present)

Member of the Award Committee (2016-present)

Chair for Geneticist Search Committee (2013-2014)

Member of the organizing committee for the Symposium on Infectious Diseases and Health Disparity in

a Changing World (2010-2011 and 2016-2017)

UNIVERSITY SERVICE

Member of the Undergraduate Scholarship Committee (2010-2012)

Member of the Faculty Senate (2010-2013)

Member of the Institutional Review Board (2008-2013)

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REFERENCES

Frederic D. Bushman Ph.D. (Former collaborator)

William Maul Measey Professor in Microbiology Perelman School of Medicine University of Pennsylvania 426 Johnson Pavilion Department of Microbiology 3610 Hamilton Walk Philadelphia, PA 19104-6076 Office: (215) 573-8732 Lab: (215) 573-8733 Email: [email protected] http://www.bushmanlab.org

Peter Cherepanov Ph.D. (Familiar with my contributions to science)

Professor Imperial College London Faculty of Medicine, Department of Medicine South Kensington Campus, Sir Alexander Fleming Building London SW7 2AZ, Office: +44 (0)20 7589 5111 Email: [email protected] http://www.imperial.ac.uk/people/p.cherepanov

Manuel Penichet M.D., Ph.D. (Faculty Advisor, familiar with my contributions to science)

Professor, Surgery Professor, Microbiology, Immunology & Molecular Genetics UCLA Surgery Factor Bldg 12-228 10833 Le Conte Ave. BOX 951782, 54-117 CHS Los Angeles, CA 90095 Office: (310) 206-5126 Email: [email protected] https://people.healthsciences.ucla.edu/institution/personnel?personnel_id=105494

Martin E. Fernandez-Zapico M.D. (Research collaborator)

Faculty Consultant, Division of Oncology Research, Department of Oncology Mayo Clinic 200 1st St SW · Rochester, MN, 55905 Phone: (507) 284-2511 Email: [email protected] https://www.mayo.edu/research/faculty/fernandez-zapico-martin-e-m-d/bio-00027450

Igor C. Almeida Ph.D. (Familiar with my contributions at UTEP)

Professor Professor, Biological Sciences Department The University of Texas at El Paso 500 West University Ave El Paso, TX, 79968 Office: (915) 747-6086

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Email: [email protected] https://www.utep.edu/science/bbrc/people/faculty.html