Europe PubMed Centralattribution and credit

ORCID - Dryad Symposium on Research AttributionMay 23rd 2013

• Europe PubMed Central overview

• A repository for the life science literature

• Built in collaboration with PubMed Central USA (+ PMC Canada) since 2006

• Led by EMBL-EBI, with the British Library, and the University of Manchester

• Supported by 20 European life science funders, led by the Wellcome Trust.

• Built in the context of life science databases at EMBL-EBI

Europe PubMed Central

• 28 million abstracts

• 2.5 million full text articles (600K OA)

• Website• Programmatic access

Four reasons to use Europe PMC

• Search abstracts and full text in the

same interface

• Semantic enrichment of full text

• Link to databases that cite articles

• Citation counts for articles (and sort

order)

• Credit for Authors

New Author Search Features

• Data Citation in Full Text Articles

gen

pdb

refsnp

omim

sprot

pfam

arrayexpress

refseq

ensembl

interpro

DOIs

Data Citation in Europe PMC articles

~125,000 articles (out of 2.6 million)

For example

Kafkas S, Kim JH, and McEntyre JR Database Citation in Full Text Articles, PLoS One

Tools for database developers and curators

• When people publish articles, they cite data

• When people make data depositions, or curate database

records, they cite articles

• RSS feed alerts when data is cited

and unknown to databaseSenay Kafkas Jee-Hyub Kim

Some observations about data citation

in research articles

• High precision

• Low frequency (5% of papers or less)

• Re-use by submitting authors is common

• Requirement to parse submission from reuse statements

• Well-cited articles cite well-cited data, but on an entirely

different scale

• Significant proportion of data being cited is not primary

data, but rather views/syntheses of primary data

• Credit for Funders

Clear funding information on records

Search for total articles and full text

API on over 50,000 grants from the 20

Europe PMC Funders

Developed by MIMAS

- Enrich grant data in Manuscript Submission Systems

GRIST

• Credit for data mining algorithms

• Credit for data sets in repositories

Labs LinkOut

Text mining algorithmsDatabases and Institutional Repositories

• Managing Credit for Authors and

Contributors

Start at ORCID

Select “Link publications to ORCID Using Europe PMC”

Use Europe PMC to add Publications to your ORCID

Send to ORCID

Linking Publications to ORCID via Europe PMC

PMC336623 Extended to many other biological data types

PeopleEBIYuci GouFlorian GrafSenay KafkasJyothi KaturiOliver KillianJee-Hyub KimNikos MarinosJo McEntyreAndrew MorrisonXingjun PiPhilip RossiterFrancesco TaloVid Vartek

University of ManchesterSophia Ananiadou, NaCTeMJohn McNaught, NaCTeMBill Black, NaCTeMRoss Macintyre, MimasVic Lyte, MimasDavis Chaplin, MimasYogesh Patel, MimasSimon Hubbard

British LibraryAnna KinseyLee-Ann ColemanRob RowbothamCraig HawkinsSami Mansoor

OpenAIRE plus collaborators