methods in enzymology volume 393 circadian rhythms · circadian rhythms 14. analysis of circadian...
TRANSCRIPT
CONTRIBUTORS TO VOLUME 393 x i
PREFACE XVI I
VOLUME IN SERIES xix
Section I . Genetic Approaches to Circadian Clocks
1 . Analysis of Circadian Rhythms in Neurospora: JAY C. DUNLAP AN D
Overview of Assays and Genetic and
JENNIFER J . LOROS
3
Molecular Biological Manipulatio n
2 . Circadian Genetics in the Model Higher Plant, MEGAN M . SOUTHERN AND
Arabidopsis thaliana
ANDREW J . MILLAR
23
3. Genetic Screens for Clock Mutants
JEFFREY L. PRICE
3 5
in Drosophila
4. Systems Approaches to Biological Rhythms
JEFFREY C . HALL
61in Drosophila
5 . Analysis of Circadian Rhythms in Zebrafish
JUN HIRAYAMA, MAKi KANEKO,
LUCA CARDONE,
GREGORY CAHILL, AN D
PAOLO SASSONE-CORSI
186
6 . Genetic Manipulation of Circadian Rhythms NAOTo HAYASAKA ,
in Xenopus
SILVIA 1. LARUE, AND
CARLA B . GREEN
205
7 . Forward Genetic Screens to Identify Circadian SANDRA M . SIEPKA AND
Rhythm Mutants in Mice
JOSEPH S . TAKAHASHI
21 9
9 . Methods to Record Circadian Rhythm Wheel SANDRA M . SIEPKA AND
Running Activity in Mice
JOSEPH S . TAKAHASHI
230
9 . Genetic Approaches to Human Behavior
Louis J . PTACEK,
CHRISTOPHER R . JONES, AND
YING-Hui Fu
239
10. Enhanced Phenotyping of Complex Traits
MARTHA MERROw AND
with a Circadian Clock Model
TILL ROENNEBERG
251
Section II . Tracking Circadian Control of Gene Activity
11 . Real-Time Reporting of Circadian-Regulated DAVID K . WELSH,
Gene Expression by Luciferase Imaging in TAKATO IMAIZUMI, AND
Plants and Mammalian Cells
STEVE A . KAY
26 9
12. Real-Time Luminescence Reporting of
SHIN YAMAZAKI AND
Circadian Gene Expression in Mammals
JOSEPH S . TAKAHASHI
28 8
13. Transgenic cAMP Response Element
KANAE IIJIMA-ANDO AND
Reporter Flies for Monitoring
JERRY C . P. YIN
302
Circadian Rhythm s
14. Analysis of Circadian Output Rhythms of
GILES DUFFIELD ,
Gene Expression in Neurospora and
JENNIFER J . LORDS, AND
Mammalian Cells in Culture
JAY C . DUNLAP
31 5
15. Molecular and Statistical Tools for Circadian HERMAN WIJNEN ,
Transcript Profiling
FELIX NAEF, AN D
MICHAEL W. YOUNG
34 1
16. RNA Profiling in Circadian Biology
JOHN R. WALKER AN D
JOHN B . HOGENESCH
36 6
Section III . Molecular Cycles : Clock Protein Rhythms
17 . Analysis of Posttranslational Regulations in the YI Lro
379Neurospora Circadian Clock
18. Analyzing the Degradation of PERIOD
HYUK WAN Ko AND
Protein by the Ubiquitin-Proteasome
ISAAC EDERY
39 4Pathway in Cultured Drosophila Cells
19. Casein Kinase I in the Mammalian
ERIK J . EIDE, HEESEOG RANG ,
Circadian Clock
STEPHANIE CRAPO ,
MONICA GALLEGO, AN D
DAVID M. VIRSHUP
408
20. Nucleocytoplasmic Shuttling of Clock Proteins FILIPPO TAMANINI ,
KAZUHIRO YAGITA ,
HITOSIII OKAMURA, AND
GIJSBERTUS T. J . VAN DER
HORST
41 8
Section IV. Anatomical Representation of Neural Clock s
21 . Techniques that Revealed the Network of
CHARLOTTE HELFRICH-FÖRSTER 43 9the Circadian Clock of Drosophila
22 . The Suprachiasmatic Nucleus is a Functionally RAE SILVER AN D
Heterogeneous Timekeeping Organ
WILLIAM J . SCHWARTZ
451
Section V. Mosaic Circadian Systems
23. Transplantation of Mouse Embryo Fibroblasts : SEHYUNG CHO,
An Approach to Study the Physiological
IRENE YUJNOVSKY,
Pathways Linking the Suprachiasmatic
MASAO Doi, AND
Nucleus and Peripheral Clocks
PAOLO SASSONE-CoRSi
46 9
24. Mouse Chimeras and Their Application to
SHARON S . LOW-ZEDDIE S
Circadian Biology
AND JOSEPH S . TAKAHASHI
47 8
Section VI . Peripheral Circadian Clocks
25. Measuring Circadian Rhythms in Olfaction
PARTHASARATHY KRISHNAN ,
Using Electroantennograms
STUART E. DRYER, AND
PAUL E. HARDIN
49 5
26. Circadian Effects of Timed Meals (and
ALEC J . DAVIDSON ,
Other Rewards)
OZGUR TATAROGLU, AND
MICHAEL MENAKER
50 9
27. Peripheral Clocks and the Regulation of
R. DANIEL RUDIC ,
Cardiovascular and Metabolic Function
ANNE M . CURTIS ,
YAN CHENG, AND
GARRET FITZGERALD
524
Section VII . Cell and Tissue Culture System
28. Circadian Gene Expression in Cultured Cells EMI NAGOSHI ,
STEVEN A . BROWN ,
CHARNA DIBNER ,
BENOIT KORNMANN, AND
UELI SCHIBLER
543
29. Cell Culture Models for Oscillator and
DAVID J . EARNEST AN D
Pacemaker Function : Recipes for Dishes
VINCENT M . CASSONE
55 8with Circadian Clocks ?
30. Analysis of Circadian Mechanisms in the
MICHAEL H . HASTINGS ,
Suprachiasmatic Nucleus by Transgenesis
AKHILESH B . REDDY,
and Biolistic Transfection
DOUGLAS G . MCMAHON ,
AND ELISABETH S . MAYWOOD 579
31 . Oligodeoxynucleotide Methods for Analyzing SHELLEY A . TISCHKAU AND
the Circadian Clock in the Suprachiasmatic MARTHA U . GILLETTE
593Nucleu s
32. Assaying the Drosophila Negative Feedback PIPAT NAWATHEAN ,
Loop with RNA Interference in S2 Cells
JEROME S . MENET, AN D
MICHAEL ROSBASH
610
33. Role of Neuronal Membrane Events
GABRIELLA B . LUNDKVIST
in Circadian Rhythm Generation
SID GENE D . BLOCK
623
Section VIII . Intercellular Signaling
34. A Screen for Secreted Factors of the
ACHIM KRAMER,Suprachiasmatic Nucleus
FU-CHIA YANG ,
SEBASTIAN KRAVES, AN D
CHARLES J . WEITZ
64 5
35. Genetic and Biochemical Strategies for
F . RoB JACKSON,
Identifying Drosophila Genes That
GINKA K. GENOVA ,Function in Circadian Control
YANMEI HUANG,
YELENA KLEYNER ,
JOOWON SUH,
MARY A . ROBERTS ,
VASUDHA SUNDRAM, AN DBIKEM AKTEN
663
36. Membranes, Ions, and Clocks: Testing the
MICHAEL N . NITABACH, TODDNjus-Sulzman-Hastings Model of the
C. HOLMES, AND
Circadian Oscillator
JUSTIN BLAU
682
Section IX. Photoresponsive Clocks
37. Mammalian Photoentrainment: Results,
STUART N. PEIRSON ,
Methods, and Approaches
STEWART THOMPSON ,
MARK W . HANKINS, AND
RUSSELL G . FOSTER
69 7
38. Cryptochromes and Circadian Photoreception CARRIE L. PARTCH AN D
in Animals
Azlz SANCAR
72 6
39. Nonvisual Ocular Photoreception in the
RussELL N . VAN GELDER
74 6Mammal
Section X. Sleeping Flies
40 . Essentials of Sleep Recordings in Drosophila : Rozl ANDRETIC AND
Moving Beyond Sleep Time
PAUL J . SHAW
75 9
41 . Drosophila melanogaster: An Insect Model for KAREN S . Ho AN D
Fundamental Studies of Sleep
AMITA SEHGAL
772
Section XI . Circadian Biology of Populations
42. Molecular Evolution and Population
ERAN TAUBER AN D
Genetics of Circadian Clock Genes
CHARALAMBOS P . KYRIACOU 79 7
43 . Testing the Adaptive Value of
CARL HIRSCHIE JOHNSON
81 8Circadian Systems
Section XII. Circadian Clocks Affecting Noncircadian Biology
44. A "Bottom-Counting" Video System for
REBECCA GEORGE,
Measuring Cocaine-Induced Behaviors
KEVIN LEASE ,
in Drosophila
JAMES BURNETTE, AND
JAY HIRSH
84 1
45 . The Circadian Clock and Tumor
CHENG CHI LEE
852
Suppression by Mammalian Period Gene s
AUTHOR INDEX 86 3
SUBJECT INDEX 905