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  • Methods & models for fMRI data analysis –HS 2014 · Methods & models for fMRI data analysis –HS 2014 Justin Chumbley Andreea Diaconescu Jakob Heinzle Sandra Iglesias Lars Kasper
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Methods & models for fMRI data analysis – HS 2014 Justin Chumbley Andreea Diaconescu Jakob Heinzle Sandra Iglesias Lars Kasper Frederike Petzschner Sudhir Shankar Raman Klaas Enno Stephan

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Page 1: Methods & models for fMRI data analysis –HS 2014 · Methods & models for fMRI data analysis –HS 2014 Justin Chumbley Andreea Diaconescu Jakob Heinzle Sandra Iglesias Lars Kasper

Methods & models for fMRI data analysis – HS 2014

Justin ChumbleyAndreea DiaconescuJakob HeinzleSandra Iglesias

Lars KasperFrederike PetzschnerSudhir Shankar RamanKlaas Enno Stephan

Page 2: Methods & models for fMRI data analysis –HS 2014 · Methods & models for fMRI data analysis –HS 2014 Justin Chumbley Andreea Diaconescu Jakob Heinzle Sandra Iglesias Lars Kasper

Room: ETZ F91

Time: Fri, 12:00 – 13:30Schedule:

19.09.: BOLD neurophysiology (Jakob Heinzle)26.09.: Spatial preprocessing of fMRI images (Lars Kasper)03.10.: The General Linear Model for fMRI analyses (K.E. Stephan)10.10.: Classical (frequentist) inference (Frederike Petzschner)17.10.: no course

24.10.: Multiple comparison correction (J. Chumbley)31.10.: Experimental design (S. Iglesias)07.11.: Event-related fMRI and design efficiency (K.E. Stephan)14.11.: Variational Bayes & Bayesian model selection (Sudhir Shankar)21.11.: Computational Neuroimaging (Andreea Diaconescu)28.11.: Multivariate models for fMRI (K.E. Stephan)05.12.: Basics of Dynamic Causal Modelling (K.E. Stephan)12.12.: Practical session on DCM (K.E. Stephan)19.12.: Advanced aspects of Dynamic Causal Modelling (K.E. Stephan)

Methods & models for fMRI data analysis

Page 3: Methods & models for fMRI data analysis –HS 2014 · Methods & models for fMRI data analysis –HS 2014 Justin Chumbley Andreea Diaconescu Jakob Heinzle Sandra Iglesias Lars Kasper

FAQs

• Slides available on http://www.translationalneuromodeling.org, more information follows.

• 3 credit points• Attendance requirements: 11/13 presentations• Exam:

– 09.01.2015: 12:00– 13:30 – (36 MC questions, 90 min time)– Pass is required to get credit points

For all administrative issues, please contact Silvia Princz ([email protected]).

Page 4: Methods & models for fMRI data analysis –HS 2014 · Methods & models for fMRI data analysis –HS 2014 Justin Chumbley Andreea Diaconescu Jakob Heinzle Sandra Iglesias Lars Kasper

Statistical Parametric Mapping (SPM)

Realignment Smoothing

Normalisation

General linear model

Statistical parametric map (SPM)Image time-series

Parameter estimates

Design matrix

Template

Kernel

Gaussian field theory

p <0.05

Statisticalinference

Page 5: Methods & models for fMRI data analysis –HS 2014 · Methods & models for fMRI data analysis –HS 2014 Justin Chumbley Andreea Diaconescu Jakob Heinzle Sandra Iglesias Lars Kasper

SPM8soon SPM12

• the history

• the program

• the spirit

Page 6: Methods & models for fMRI data analysis –HS 2014 · Methods & models for fMRI data analysis –HS 2014 Justin Chumbley Andreea Diaconescu Jakob Heinzle Sandra Iglesias Lars Kasper

SPM documentationpeer reviewed literature SPM course notes,

SPM book & SPM manual

online help & function descriptions

algorithm descriptions,code annotations,pseudo-code

Page 7: Methods & models for fMRI data analysis –HS 2014 · Methods & models for fMRI data analysis –HS 2014 Justin Chumbley Andreea Diaconescu Jakob Heinzle Sandra Iglesias Lars Kasper

SPM online bibliography

http://www.fil.ion.ucl.ac.uk/spm/

Page 8: Methods & models for fMRI data analysis –HS 2014 · Methods & models for fMRI data analysis –HS 2014 Justin Chumbley Andreea Diaconescu Jakob Heinzle Sandra Iglesias Lars Kasper

SPM web site• Introduction to SPM • SPM distribution:

SPM99, SPM2, SPM5, SPM8

• Documentation & Bibliography

• SPM email discussion list• SPM short course• Example data sets• SPM extensions

http://www.fil.ion.ucl.ac.uk/spm/

Page 9: Methods & models for fMRI data analysis –HS 2014 · Methods & models for fMRI data analysis –HS 2014 Justin Chumbley Andreea Diaconescu Jakob Heinzle Sandra Iglesias Lars Kasper

• [email protected]– Web home page

• http://www.fil.ion.ucl.ac.uk/spm/support/

• Archives, archive searches, membership lists, instructions– Subscribe

• http://www.jiscmail.ac.uk/• email [email protected]

– join spm Firstname Lastname

– Participate & learn• email [email protected]• Monitored by SPMauthors• Usage queries, theoretical discussions,

bug reports, patches, techniques, &c…

[email protected]://www.fil.ion.ucl.ac.uk/spm/support/

SPM email list


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