national bioresource project (nbrp information site)nbrp.jp/data/nbrp_dbsymposiumen.pdf[kdri] lotus...

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Acknowledgements 1:Web portal. You can access all information from here. Provides a way to contact us. 2:Browse function of all resources (sorted by organism) 3:Keyword search of all resources. 4:Sequence homology search. 5:Gene ontology search The following services are in progress 6:Search for resources against references 7:Search for resources against taxonomy 8:Search for plant resources against plant ontology 9:Search for resources against phenotype (Ontology) OBATA Yuichi SHIROISHI Toshihiko IWASE Shu FUKAMI Kaoru Virger Voigt WAKAMATSU Yuko TAIRA Masanori Naruse Kiyoshi UEDA Ryu FUJITANI Kazuko HASHIMOTO Hisashi KONDO Hisato FURUTANI-SEIKI Makoto ISHIKAWA Yuji KUDO Akira FUJITA Misato TOMARU Masatoshi ISHIOKA Akiko FUJII Hiroshi SATO Kazuhiro OGIHARA Yasunari TUJIMOTO Hisashi KAWAHARA Taihachi YAMANE Kyoko KAWAURA MOCHIDA OCHIAI Toshinori WATANABE Makoto KAWACHI HASHIGUCHI Masatsugu TABATA Satoshi ISOBE Sachiko ABE Jun HARADA Hisaya SHIMODA Chikashi KANEKO Yoshinobu ITO Keiko YOSHIMURA Atsushi NAGATO Yasushi SATO Hikaru MORISHIMA Keiko IYAMA Shinya MIYABAYASHI Toshie NONOMURA Kenichi SUGAWARA Hideaki HIROTOMI Hiromi MATSUZAWA Tetsuro YOSHIKAWA Yasuhiro KURASHIMA Osamu KIKUCHI Shunichi INOUE Satoko NISHIMURA Akiko NISHIMURA Kazuko YAMAKAWA Takehiro WATANABE Koji TSUCHIYA Rie OOGUSHI Kazuhiro SAKANIWA Shingo WATANABE Toru YAHAGI Wataru YOSHIOKA Miharu SAITO Mutsumi YAMAKAWA Tomoe SHAROH Yip KIBUKAWA Eri YANO Sumiko KIMURA Gaku SAGA Masakazu TAKAHASHI Yuka HATTORI Manabu *2008.04-2009.03 月平均利用者 (2008.5 - 2009.4) National BioResource Project (NBRP Information Site) Resource count 4,318,602 Amnimal: 2,753,588 Plant: 1,379,551 Microbe: 156,743 Journals of researches that use NBRP resources users/month Due to the activities of the National Bioresource Project (NBRP) which started since 2002, access to research bioresources has improved remarkably. The information on bioresources which was obtained through this project is fully disclosed on our website (http://www.nbrp.jp/). The 27 types of public databases have distinctive structures that reflect the characteristic of each organism and fulfill the needs of the research community. The procedures to request for most of the resources can be conducted online. At the information center, we strive to utilize our data efficiently to provide new value-added information. Cross-species searches for resources such as keyword search, sequence homology search and gene ontology search are provided. In addition to collecting and publicizing journals of researches that use resources provided by NBRP, we are planning to expand the utilization of resources through the interoperability with genome databases and related databases of other countries. JSCC Japan Society for Culture Collections ZFIN WormBase [KDRI] Lotus japonicus EST Gene DB Flybase Gramene JMSR dictyBase IMSR Saccharomyces Genome Database R e s e a r c h C o m m u n i t y Service provided by Information Center [Soybean] Full-Length cDNA Database KASAI Fumie AKASHI Ryo NIKI Hironori NAKAMURA Taro KAMEI Katsuhiko MIKAMI YuzuruNAKAMURA Yukio NAKATSUJI Norio OBATA Yuichi YOKOYAMA Kazunari OHKUMA Moriya BENNO YoshimiBANNO Yutaka ISA Tadashi KOBAYASHI Masatomo SATO Kazuhiro TAKEDA KazuyoshiKURATA Nori ENDO Takashi NITASAKA Eiji KUSABA Makoto EZURA Hiroshi YOSHIKI Atsushi SERIKAWA Tadao YAOITA Yoshio NARUSE Kihoshi YAMAMOTO Masatoshi OKAMOTO Hiroshi MITANI Shohei INABA Kazuo SATO NoriyukiURUSHIBARA Hideko abstract SubtiList Web Server DB Contents of all species 4,117 150,000 (2008.5 - 2009.4) http://www.nbrp.jp/ http://www.nbrp.jp/ http://www.nbrp.jp/ Web Portal NBRP Information Site NBRP-Drosophila NBRP-Drosophila Mice o o o o o o o o o o Rats o o o o o o o Drosophila o o o o o o C.elegans o o o o o o o Silkworms o o o o o o Medaka o o o o o o o o Zebrafish o o o o o o o Japanese macaques o o o C. intestinalis/O. japonicus o o o Arabidopsis/Cultured plant cells, genes o o o o o o Rice o o o o o o o o Wheat o o o o o o o Barley o o o o o Algae o o o o o Chrysanthemum o o o Morning glory o o o o o o o o Lotus o o o o o o o o o Glycine o o o o o o o o Tomatoes o o Cellular slime molds o o o o Pathogenic microorganisms o o o o General microbes o o o E. coli o o o o o o o B. subtilis o o o o Yeast o o o o o o o o Human embryonic stem cells o o o Human and Animal Cells o o o o Wild typeInbred lineCultivar Mutants Genome Clone EST Clone PlasmidVector Gene Physical MapsGenetic Maps Traits Images (morphology, ExpressionReferences Collaboration Xenopus NBRP-Mice NBRP-C.elegans NBRP-Rat NBRP-Rat NBRP-Xenopus NBRP-Silkworms NBRP-Medaka NBRP-Zebrafish NBRP-Japanese macaques NBRP-C.intestinalis / O.japonicus NBRP-Arabidopsis/Cultured plant cells, genes NBRP-Rice NBRP-Wheat NBRP-Barley NBRP-Algae NBRP-Chrysanthemum NBRP- Morning glory NBRP-Tomatoes NBRP-Pathogenic microorganisms NBRP-General microbes NBRP-Yeast NBRP-Human embryonic stem cells NBRP-Human and Animal Cells NBRP-DNA material NBRP-Mice NBRP-C.elegans NBRP-Xenopus NBRP-Silkworms NBRP-Medaka NBRP-Zebrafish NBRP-Japanese macaques NBRP-C.intestinalis / O.japonicus NBRP-Arabidopsis/Cultured plant cells, genes NBRP-Rice NBRP-Wheat NBRP-Barley e NBRP-Cellular slime molds NBRP-Cellular slime molds NBRP-Algae NBRP-Chrysanthemum NBRP- Morning glory NBRP-Tomatoes NBRP-Pathogenic microorganisms NBRP-General microbes NBRP-Prokaryotes (E. coli) NBRP-Prokaryotes (E. coli) NBRP-Yeast NBRP-Human embryonic stem cells NBRP-Human and Animal Cells NBRP-DNA material NBRP-Lotus / Glycine NBRP-Lotus / Glycine NBRP-Prokaryotes ( B. subtilis ) NBRP-Prokaryotes (B. subtilis) Hiroshima Hiroshima NIPS NIPS Hiroshima Hiroshima NIES NIES RIKEN BRC RIKEN BRC NIBB NIBB NIG NIG NIG NIG R e s e a r c h C o m m u n i t y DGRC DGRC Tsukuba Tsukuba NIG NIG Osaka Osaka TWMU TWMU Miyazaki Miyazaki Okayama Okayama Tsukuba Tsukuba Chiba Chiba Tsukuba Tsukuba RIKEN BRC RIKEN BRC KYOTO KYOTO KYOTO KYOTO Kyusyu Kyusyu KYOTO KYOTO Kyusyu Kyusyu RIKEN BRC RIKEN BRC RIKEN BSI RIKEN BSI RIKEN BRC RIKEN BRC RIKEN BRC RIKEN BRC NBRP Information Site

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Page 1: National BioResource Project (NBRP Information Site)nbrp.jp/data/nbrp_dbSymposiumEn.pdf[KDRI] Lotus japonicus EST Gene DB Flybase Gramene JMSR dictyBase IMSR Saccharomyces Genome Database

Acknowledgements

1:Web portal.  You can access all information from here.  Provides a way to contact us.2:Browse function of all resources (sorted by organism)3:Keyword search of all resources.4:Sequence homology search.5:Gene ontology search

The following services are in progress 6:Search for resources against references7:Search for resources against taxonomy8:Search for plant resources against plant ontology9:Search for resources against phenotype (Ontology)

OBATA YuichiSHIROISHI ToshihikoIWASE ShuFUKAMI KaoruVirger VoigtWAKAMATSU YukoTAIRA MasanoriNaruse KiyoshiUEDA RyuFUJITANI KazukoHASHIMOTO HisashiKONDO HisatoFURUTANI-SEIKI MakotoISHIKAWA YujiKUDO AkiraFUJITA MisatoTOMARU Masatoshi

ISHIOKA AkikoFUJII HiroshiSATO KazuhiroOGIHARA YasunariTUJIMOTO HisashiKAWAHARA TaihachiYAMANE KyokoKAWAURA MOCHIDA OCHIAI ToshinoriWATANABE MakotoKAWACHIHASHIGUCHI MasatsuguTABATA SatoshiISOBE SachikoABE JunHARADA HisayaSHIMODA Chikashi

KANEKO YoshinobuITO KeikoYOSHIMURA AtsushiNAGATO YasushiSATO HikaruMORISHIMA KeikoIYAMA ShinyaMIYABAYASHI ToshieNONOMURA KenichiSUGAWARA HideakiHIROTOMI HiromiMATSUZAWA TetsuroYOSHIKAWA YasuhiroKURASHIMA OsamuKIKUCHI ShunichiINOUE SatokoNISHIMURA Akiko

NISHIMURA KazukoYAMAKAWA TakehiroWATANABE KojiTSUCHIYA RieOOGUSHI KazuhiroSAKANIWA ShingoWATANABE ToruYAHAGI WataruYOSHIOKA MiharuSAITO MutsumiYAMAKAWA TomoeSHAROH YipKIBUKAWA EriYANO SumikoKIMURA GakuSAGA MasakazuTAKAHASHI YukaHATTORI Manabu

*2008.04-2009.03

月平均利用者 (2008.5 - 2009.4)

National BioResource Project (NBRP Information Site)

Resource count 4,318,602

Amnimal: 2,753,588 Plant: 1,379,551Microbe: 156,743

Journals of researches that use NBRP resources 

users/month

Due to the activities of the National Bioresource Project (NBRP) which started since 2002, access to research bioresources has improved remarkably. The information on bioresources which was obtained through this project is fully disclosed on our website (http://www.nbrp.jp/). The 27 types of public databases have distinctive structures that reflect the characteristic of each organism and fulfill the needs of the research community. The procedures to request for most of the resources can be conducted online. At the information center, we strive to utilize our data efficiently to provide new value-added information. Cross-species searches for resources such as keyword search, sequence homology search and gene ontology search are provided. In addition to collecting and publicizing journals of researches that use resources provided by NBRP, we are planning to expand the utilization of resources through the interoperability with genome databases and related databases of other countries.

JSCCJapan Society for

Culture Collections

ZFINWormBase

[KDRI] Lotus

japonicus EST

Gene DBFlybase

Gramene

JMSR

dictyBase IMSRSaccharomyces

Genome Database

R e s e a r c h C o m m u n i t y

Service provided by Information Center

[Soybean] Full-Length

cDNA Database

KASAI Fumie

AKASHI Ryo

NIKI Hironori

NAKAMURA Taro

KAMEI Katsuhiko(MIKAMI Yuzuru*)

NAKAMURA Yukio

NAKATSUJI Norio

OBATA Yuichi(YOKOYAMA Kazunari*)

OHKUMA Moriya(BENNO Yoshimi*)

BANNO Yutaka

ISA Tadashi

KOBAYASHI Masatomo

SATO Kazuhiro(TAKEDA Kazuyoshi*)

KURATA Nori

ENDO Takashi

NITASAKA Eiji

KUSABA Makoto

EZURA Hiroshi

YOSHIKI Atsushi

SERIKAWA Tadao

YAOITA Yoshio

NARUSE Kihoshi

YAMAMOTO Masatoshi

OKAMOTO Hiroshi

MITANI Shohei

INABA Kazuo(SATO Noriyuki*)

URUSHIBARA Hideko

abstract

SubtiList Web Server

DB Contents of all species

4,117

150,000(2008.5 - 2009.4)

http://www.nbrp.jp/http://www.nbrp.jp/http://www.nbrp.jp/

Web Portal

NBRPInformation

Site

NBRP-DrosophilaNBRP-Drosophila

Mice o o o o

o

o o o o o oRats o o o o o o oDrosophila o o o o o oC.elegans o o o o

o o oSilkworms o o o o o oMedaka o o o o o o o oZebrafish o o o o o o oJapanese macaques o o oC. intestinalis/O. japonicus o o oArabidopsis/Cultured plant cells, genes o o o o o oRice o o o o o o o oWheat o o o o o o oBarley o o o o oAlgae o o o o oChrysanthemum o o oMorning glory o o o o o o o oLotus o o o o o o o o oGlycine o o o o o o o oTomatoes o oCellular slime molds o o o oPathogenic microorganisms o o o oGeneral microbes o o oE. coli o o o o o o oB. subtilis o o o oYeast o o o o o o o oHuman embryonic stem cells o o oHuman and Animal Cells o o o

o

Wild ty

pe・In

bred l

ine・C

ultiva

r

Mutants

Genom

e Clon

e

EST Clon

e

Plasmid・

Vector

Gene

Physic

al Map

s・Gen

etic M

aps

Trait

sIm

ages

(morp

holog

y, Exp

ressio

n)

Referen

ces

Collab

oratio

n

Xenopus

NBRP-Mice

NBRP-C.elegans

NBRP-RatNBRP-Rat

NBRP-XenopusNBRP-Silkworms

NBRP-Medaka

NBRP-Zebrafish

NBRP-Japanese macaques

NBRP-C.intestinalis / O.japonicus

NBRP-Arabidopsis/Cultured plant cells, genes

NBRP-Rice

NBRP-Wheat

NBRP-Barley

NBRP-Algae

NBRP-Chrysanthemum

NBRP-Morning glory

NBRP-Tomatoes

NBRP-Pathogenic microorganisms

NBRP-General microbes

NBRP-Yeast

NBRP-Human embryonic stem cells

NBRP-Human and Animal Cells

NBRP-DNA material

NBRP-Mice

NBRP-C.elegans

NBRP-XenopusNBRP-Silkworms

NBRP-Medaka

NBRP-Zebrafish

NBRP-Japanese macaques

NBRP-C.intestinalis / O.japonicus

NBRP-Arabidopsis/Cultured plant cells, genes

NBRP-Rice

NBRP-Wheat

NBRP-Barley

NBRP-Rice

NBRP-Cellular slime moldsNBRP-Cellular slime molds

NBRP-Algae

NBRP-Chrysanthemum

NBRP-Morning glory

NBRP-Tomatoes

NBRP-Pathogenic microorganisms

NBRP-General microbes

NBRP-Prokaryotes (E. coli)

NBRP-Prokaryotes (E. coli)

NBRP-Yeast

NBRP-Human embryonic stem cells

NBRP-Human and Animal Cells

NBRP-DNA material

NBRP-Lotus / Glycine

NBRP-Lotus / Glycine

NBRP-Prokaryotes (B. subtilis)

NBRP-Prokaryotes (B. subtilis)

HiroshimaHiroshima

NIPSNIPS

HiroshimaHiroshimaNIESNIES

RIKEN BRCRIKEN BRC

NIBBNIBB

NIGNIG

NIGNIG

R e s e a r c h C o m m u n i t y

DGRCDGRC

TsukubaTsukuba

NIGNIGOsakaOsaka

TWMUTWMU

MiyazakiMiyazakiOkayamaOkayama

TsukubaTsukuba

ChibaChiba

TsukubaTsukubaRIKEN BRCRIKEN BRC

KYOTOKYOTO

KYOTOKYOTO

KyusyuKyusyu

KYOTOKYOTO

KyusyuKyusyu

RIKEN BRCRIKEN BRC

RIKEN BSIRIKEN BSI

RIKEN BRCRIKEN BRC

RIKEN BRCRIKEN BRC

NBRPInformation

Site

NBRPInformation

Site