NBCR Summer Institute 2006

GridPortlets:Hands-on Installation and Development

Jason NovotnyJnovotny@ncmir.ucsd.edu

Installing GridPortlets

cd projects/gridportletsant install$CATALINA_HOME/bin/startup.sh

GridFunctionality is provided by our package called 'GridPortlets'GridPortlets is build on top of Java CoGNeed to have Globus on the resources working Certificates for portal and the userINSTALL.txt and TIPS.txt in the gridportlets source directory providing addtional information

Will deploy GridPortlets to GridSphere and generate documentation

GridPortlets BasicsUsing

Subscribing to GridPortlets

Need to subscribe to the 'GridPortlets' GroupGrid Tab will appear and provide the Portlets

Define Credentials

Users can retrieve credentials from a MyProxy credential repositoryCan enable their credentials for "single sign on" to computing resources at login time

New Credential

Resources

Resources available to users from the portal can be edited online or via XML File

Resources II

Information of each resource can be updated via MDS and/or iGrid

Starting a Job

A Wizard guides the user to the JobSubmission processSupports different types of jobs, either generic or user specific jobtypes which can be installed by an AdministratorJobSubmissionsServices supported in the moment are Globus and Gridlab GRMS but it is extendable to others

Defining a Job

Define a simple 'ls' on a resource

Defining a Job II

Select the machine to run onChoose number of processors and jobqueues

Submitting the Job

Review Job Specification

Job completed

Job did run and is completedShowing information about the job and Job output

File Browser Portlet

Users can browse files on remote computing resources in a manner similar to how they might browse files on their desktop. We have made it relatively simple to create new directories, transfer and delete files all with simple HTML interfaces

GridPortlets BasicsProgramming

Typical Tasks

Need credentialLocate executableAdd parameters and parameterfilesChoose machine to run onTransfer executable & parameterfiles to the selected resourceExecute jobGet Status on jobTransfer StdOut/StdErr and other outputfilesEverything was seems easy on local machines maybe not on the Grid (e.g. mkdir -p) !All codesamples are contained within GridPortlets

GridPortlet Services

Everything is wrapped up in servicesCredentialManagerServiceJobSubmissionServiceUserManagementService

To use these any portlet or other service has to instantiate the needed services

public void init(PortletConfig config) throws PortletException {super.init(config);try {

ums = (UserManagerService)createPortletService(UserManagerService.class); cms = (CredentialManagerService)createPortletService(CredentialManagerService.class); crs = (CredentialRetrievalService)createPortletService(CredentialRetrievalService.class); } catch (PortletServiceException e) { log.error("Unable to initalize Credential/UsermanagerService."+e); } }

Credentials

CredentialManagment has function tocreateactivatedeactivatedelete...

To check if a user has a credential public boolean userHasCredentials(String username) { User user = ums.getUserByUserName(username); boolean answer = true; if (cms.getActiveCredentials(user).size() == 0) { answer = false; } return answer; }

Listing Files

To get a filelisting use the FileBrowserService

1 FileBrowser fileBrowser = fileBrowserService.createFileBrowser(user, fileHostName);

2 FileListing fileListing = fileBrowser.list(filePath);3 fileListing.waitFor();4 List fileLocations = fileListing.getFileLocations();

Directory operations

Get a user's home directory

Create a directory

1 FileBrowser fileBrowser = fileBrowserService.createFileBrowser(user,

fileHostName);2 String homeDir = fileBrowser.getHomeDirectory();

1 FileBrowser fileBrowser = fileBrowserService.createFileBrowser(user,

fileHostName);2 FileMakeDir makeDir = fileBrowser.makeDirectory(dstPath);3 makeDir.waitFor();

Copy files

FileBrowserServices provides needed methods

1 FileBrowser srcBrowser = fileBrowserService.createFileBrowser(user,

srcHostName);2 FileLocation srcLocation = srcBrowser.createFileLocation(srcPath);3 FileBrowser dstBrowser = fileBrowserService.createFileBrowser(user,

dstHostName);4 FileBrowser dstLocation = fileBrowser.createFileLocation(dstPath);5 FileCopy copy = srcFileBrowser.copy(srcLocation, dstLocation);7 copy.waitFor();