network requirements from ukrainian biotechnology communities lubov n. shynkarenko fbb
TRANSCRIPT
Network requirements from Ukrainian Network requirements from Ukrainian Biotechnology communitiesBiotechnology communities
Lubov N. ShynkarenkoLubov N. Shynkarenko
FBB
Modern biotechnologyModern biotechnology
• MARKET - 500 billions $ US
•Europe - 1570 companies
•USA - 1273 companies
•Health
•Agriculture
•Environmental
•Energy
•Industry
•Bioinformatics
Human genome - 1988
•3 billions $ US
•More than 30 countries
•Bioinformnetworks
•Genomics
•Proteomics
•Metabolomicsin vitro + in vivo
INSILICO
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From Genomics to From Genomics to ProductsProducts
Genotype PhenotypeReverse Genetics
Forward Genetics
GENE RNA Proteins Metabolites Organisme
Genomics Platform
ProteomeMetabolome
Profiling
B i o i n f o r m a t i c sTranscriptome
Markers
New Genes
New Trails
New Actions
New Products
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DNA
Sequence
Map
Bioinformatics strategyBioinformatics strategy
BioinformaticsPROTEOMICSPROTEOMICS
COMPUTATIONAL COMPUTATIONAL BIOLOGYBIOLOGY
EVOLUTIONARY EVOLUTIONARY BIOLOGYBIOLOGY GENETICSGENETICS
FUNCTIONAL FUNCTIONAL GENETICSGENETICS
STRUCTURALSTRUCTURALGENIMOCSGENIMOCS
METABOLOMICSMETABOLOMICS
PROTEIN INTERACTIONPROTEIN INTERACTIONNETWORKSNETWORKS CLINICAL CLINICAL
DATADATA
LITERATURELITERATURE
GENOM GENOM SEQUENCINGSEQUENCING
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Bioinformatics CENTERS AND Bioinformatics CENTERS AND NETWORKSNETWORKS
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World networksWorld networks - - 28 28 (centers, groups, (centers, groups, servers)servers)IBM - Structural bioinformatics Inc. IBM - Structural bioinformatics Inc.
(SBI)(SBI) (software, hardware and (software, hardware and WebSphere)WebSphere)RussiaRussia - - 6 6 (centers, groups, servers)(centers, groups, servers)
UkraineUkraine - - 0 0 (centers, groups, servers)(centers, groups, servers)
+ + (local structures - NASU, AMS, (local structures - NASU, AMS, UAA, cell’s collections, universities, UAA, cell’s collections, universities, industry)industry)
TASKS - formation national bionetworks TASKS - formation national bionetworks and integration to world bioinformatic and integration to world bioinformatic
spheresphere
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BIOTECHNOLOGY & BIOTECHNOLOGY & Bioinformatics in Ukrainian Bioinformatics in Ukrainian
EducationEducation
FACULTY of BIOTECNOLOGY and BIOENGINEERING 2001FACULTY of BIOTECNOLOGY and BIOENGINEERING 2001
National Technical University “KPI” National Technical University “KPI”
Department of Industrial Biotechnology
Spesiality - Industrial Biotechnology
Spesialization - BIOINFORMATICS
BIOINFORMATICIANS = Biotechnologists +Computer scientists +Computational biologist + Medics + other Professionals