notch and tle-dependent histone deacetylation explain il-12 … · notch and tle-dependent histone...
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Notch and TLE-dependent histone deacetylation explain IL-12 p70 inhibition by zymosan Yolanda Alvarez, Cristina Municio, Etzel Hugo, Jimmy Zhu, Sara Alonso, Xiaoyu Hu, Nieves Fernández, and Mariano Sánchez Crespo
Four Supplemental Figures
Figure Legends for Supplemental Data
Supplemental Fig. 1. Effect of different ligands on IFN-β production and induction of IRF-1, IRF-3, and IRF-8. DC were treated for 1 hour with 1 mg/ml zymosan or left untreated and at the end of this period were incubated in the presence of 1000 U/ml of either IFN-α or IFN-γ, 10 μg/ml Poli I:C, 10 μg/ml LPS or combination thereof. IFN-β protein was assayed in the media at 24 hours and the mRNA of IFN-β was assayed by RT-PCR in total RNA extracted after 4 hours of incubation (A). DC were stimulated with different additions for the times indicated. After this time, nuclear extracts were obtained and used for the binding assay of IRF-3 activity to consensus sequences using TransAM® assay. The specificity of binding was confirmed by carrying out the reaction in the presence of an excess of wild type (WT) and mutated probe. Positive and negative controls have been included as indicated (B). The expression of the mRNA encoding IRF-1 and IRF-8 in samples obtained 4 hours after the addition of the stimuli is shown in (C). Results are representative of at least three independent experiments and are expressed as mean ± S.D. * P < 0.05 Supplemental Fig. 2. Dectin-1 blockade does not reverse the effect of zymosan on IL-12 p70 production elicited by LPS and IFN-γ. The effect of preincubation with 10 μg/ml anti-dectin-1 mAb on IL-12 p70 production elicited by LPS + IFN-γ is shown in (A). The effect of zymosan addition prior to the stimulation with LPS and IFN-γ in bone-marrow derived DC from dectin-1+/+ and dectin-1-/- mice is shown in (B). Panel A shows a representative experiment of three with identical trend. Panel B shows mean ± S.D. of three independent experiments. Supplemental Fig. 3. Effect of different additions on the expression of the mRNA encoding hes1 and hey1. DC were incubated with zymosan or left untreated for 1 hour. At the end of this time, different ligands were added to the medium. Two hours thereafter, total mRNA was extracted and used for the assay of hes1 and hey1 mRNA by real-time RT-PCR. Data represent mean values of two independent experiments with duplicate samples. Supplemental Fig. 4. Diagram of the mechanism of inhibition of IL-12 p35 by zymosan. Zymosan is bound by a number of receptors on DC (TLR2 and dectin-1 have been selected for the sake of clarity, but receptors as DC-SIGN, CR3, the mannose receptor, and dectin-2 might also be involved). This binding generates signals mediated
Notch and histones in the IL-12/IL-23 balance
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by Syk, Ca2+, PKC, MAPKs, and IKKs that produce binding of RBP-Jκ and NICD to the promoters of Notch family proteins. This allows the induction of Hes1, Hes5, Hey1, and TLE proteins. These proteins bind to the il12a promoter and counteract κB- and IFN-γ-activated sequence (GAS)-mediated transcription by recruiting deacetylases and allowing the removal of acetyl groups from histones and/or transcription factors. PKC can contribute to counter signals from IFN-γ receptor (IFNGR1) that are inhibitory by acting on Notch intracellular domain (NICD) protein expression. Ac, acetyl; DAC, diacylglycerol; HDA, histone deacetylase; H3, histone H3; IP3, inositol trisphosphate; P, phosphate; PLCγ, phospholipase Cγ; RBP-J (recombining binding protein suppressor of hairless). The core sequence of the Runt site is in red. The E-box palindrome is in italics.
Notch and histones in the IL-12/IL-23 balance
2
A
Supplemental Figure 1
IFN
-β
(p
g/10
6 cel
ls)
Con
trol
IFN
-γ
IFN
-α
LPS
Pol
i I:C
Pol
i I:C
+ IF
N-α
Pol
i I:C
+ IF
N-γ
LPS
+ IF
N-α
LPS
+ IF
N-γ
LPS
+ P
oli I
:C
IFN
-β m
RN
A (A
U)
020406080
100120140160180200
ZymosanMedium
0.000.050.100.150.200.250.300.350.400.45
IRF-
3 bi
ndin
g ac
tivity
(opt
ical
den
sity
450
nm
)
Con
trol
LPS
+ IF
N-α
LP
S +
IFN
-γ
Con
trol
LPS
+ IF
N-α
LP
S +
IFN
-γ
- Con
trol
+ C
ontro
lC
ontro
l + W
T pr
obe
+ C
ontro
l+
Mut
ated
pro
be
1 Hour 2 Hours
0.0
0.5
1.0
1.5
2.0
2.5
3.0
ZymosanMedium
Con
trol
IFN
-γ
IFN
-α
LPS
Pol
i I:C
Pol
i I:C
+ IF
N-α
Pol
i I:C
+ IF
N-γ
LPS
+ IF
N-α
LPS
+ IF
N-γ
LPS
+ P
oli I
:C
IRF-
1 m
RN
A (A
U)
0.00
0.05
0.10
0.15
0.20
0.25
0.30
0.35
0.0
0.5
1.0
1.5
2.0
2.5
3.0
3.5
IRF-
8 m
RN
A (A
U)
B
C
*****
**
*
**
*
*** *
**
* * *
Notch and histones in the IL-12/IL-23 balance
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IL-1
2 p7
0 (n
g/10
6 cel
ls)
0.00.20.40.60.81.01.21.41.61.82.0
Zymosan (mg/ml)0 0.5 1
WTDectin-1 KO
Zymosan (mg/ml) 0 0.05 0.1 0.5 1 2
IL-1
2 p7
0 (n
g/10
6 cel
ls)
0.0
0.2
0.4
0.6
0.8
1.0
1.2
1.4 ControlAnti-Dectin-1 mAb
A
B
Supplemental Figure 2
Notch and histones in the IL-12/IL-23 balance
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Med
ium
IFN
-γ
LPS
Pol
i I:C
LPS
+ IF
N-γ
Pol
i I:C
+ IF
N-γ
LPS
+ P
oli I
:C
Preincubation with zymosanA
Supplemental Figure 3
02468
101214161820
hey1
mR
NA
(AU
)
0
2
4
6
8
10
hes1
mR
NA
(AU
)
Med
ium
IFN
-γ
LPS
Pol
i I:C
LPS
+ IF
N-γ
Pol
i I:C
+ IF
N-γ
LPS
+ P
oli I
:C
0.0
0.1
0.2
0.3
hey1
mR
NA
(AU
)
0.0
0.1
0.2
0.3
0.4
hes1
mR
NA
(AU
)
Notch and histones in the IL-12/IL-23 balance
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Hes
NIC
D
Syk
Dectin-1
PLC γ-Y-P
DAGDAG
PKC
ITAM
MAPK
TLR9TLR2
MyD
88
DD
MAL
Kinase
IRAK
4K
inaseIR
AK4
IRAK
4K
inaseIR
AK4
Kinase
IRAK
4IR
AK4
PP
P IP3
PP
P
PP
P IP3
CARD9BCL10MALT
TRAF6
hes1 promoter il12a promoter
IKKβ
IKKα
IKK γ
INFγINFγ
INFγR1INFγR1 INFγR1INFγR1
RBP-Jκ
JAK-1JAK-1JAK-2JAK-2
STAT2
STAT
1
Y701
Y701
Hey
1H
es1
TLE
accgcacgtg
HDA
H3H3
AcPP
HDAP
Ac
κB siteGASE-boxRunt site
Supplemental Figure 4
Notch and histones in the IL-12/IL-23 balance
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