ogurel thz-bio v4

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Proteins exhibit dynamic behavior with their normal modes vibrating at terahertz frequencies. Building on previous studies, TDS experiments were performed identifying specific absorption of terahertz radiation by met-hemoglobin and myoglobin, thus verifying the “Protein Electrodynamic” hypothesis. Subsequent studies have also demonstrated the utility of terahertz radiation as a potential diagnostic modality for “Terahertz Medicine.I. INTRODUCTION AND BACKGROUND roteins, often depicted as static structures, are quite dynamic, with such motions being investigated theoretically [1,2] and experimentally [36]. These vibrations are essential to protein function [7, 8] and currently three protein motion databases exist, cataloguing their normal modes, experimental data, and molecular dynamics trajectories. [9-11] Using these databases, one study of over 4,000 example proteins showed the majority had less than two low-frequency modes [12], with these vibrations relating to conformational shifts [13], and the lowest-frequency NMAs predicting, too, the direction of these conformational changes. [14] Molecular dynamics calculations and experimental studies have shown these large-scale ‘low-frequency’ normal modes vibrate generally in the 10 12 hertz (terahertz) range. Neutron scattering experiments on myoglobin, for example, showed a major spectral peak between 450 600 GHz (15 20 cm -1 ) [15] While proteins are typically isoelectric, they exhibit surface charges and dipoles [16, 17] Accelerating (vibrating) charges radiate and absorb electromagnetic energy, as should proteins as well: a concept we call: “Protein Electrodynamics.” To verify this, time domain terahertz spectroscopy (TDS) was performed on human met-hemoglobin at the Pohang Accelerate Laboratory. [18, 19] Three major spectroscopic patterns were observed: (1) broad absorption above 1.5THz, (2) two mid-range resonances at 0.8 and 1.3THz, and (3) lower-frequency emission. These spectroscopic features correspond to the known characteristics of protein vibrations: a broad spectrum of higher frequencies extending into the infrared, as well as the functionally significant lower frequency modes. [20] Beyond establishing proof-of-concept, such experiments (and others [21]) have prepared the groundwork to apply the ‘protein electrodynamic’ concept to novel approaches in medical diagnosis and therapeutics, which we term, Terahertz Medicine.” II. RESULTS Following up on these studies, further experiments were performed using the same procedures as outlined in [20] with both bovine and human met-hemoglobin as well as human myoglobin. In addition to reproducing the spectroscopic features previously described, including the high-frequency Stokes shift, other important results were obtained: First, there was a difference at the higher (~ 1.1 1.5 THz) frequencies between myoglobin and hemoglobin, of which the former, a smaller molecule, absorbed more significantly at these higher frequencies. Second, there was a species specific difference between human and bovine hemoglobin at approximately 0.6 THz, with human hemoglobin absorbing at this frequency and the bovine variety showing the opposite. As the three proteins share the same ‘globin’ fold, there were, also, as expected, similarities between the three proteins, for example with their lack of absorption at 0.5 THz. This research further confirms the ‘Protein Electrodynamic’ hypothesis: that proteins interact with terahertz radiation, as related to the underlying protein dynamics. The idea that individual proteins might express unique spectroscopic signalscoupled with the imaging properties of terahertz radiation more generallysuggests an anatomic-molecular imaging modality of great sensitivity and specificity, without requiring exogenous probes, labels, or contrast. III. DISCUSSION & CONCLUSIONS Following up on these studies, further TDS experiments were also conducted with both cancer and Alzheimer’s tissues [22 28]. While these studies were not intended to elicit specific protein spectral features, they substantiate spectral normal and pathologic specimens can be distinguished spectroscopically, thus serving as a basis for novel, more biologically specific, medical diagnostic modalities. We envision, too, that terahertz radiation, resonantly modulating protein motions and hence protein function, can serve as a basis entirely novel and powerful methods of medical therapeutics. The use of tunable (CW) THz sources, particularly in the sub-THz range, will be particularly important for such clinical applications in order to minimize water absorption and maximize radiative power at frequencies specific to the proteins of interest. Ogan Gurel a,b , Richard McKay a,c , Seong-hoon Jeong d , Jaehun Park d , Seong-Eon Ryu e , Niru Nahar f , Kubilay Sertel f a NovumWaves, Seoul, Korea, b DRB Holdings, Busan, Korea, c Full Spectrum Scientific, Princeton, USA, d Pohang Accelerator Laboratory and POSTECH, Pohang, Korea, e Hanyang University, Seoul, Korea, f The Ohio State University, Columbus, Ohio, USA Protein Electrodynamics & Terahertz Medicine: An Update P

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Page 1: OGurel THz-Bio v4

Proteins exhibit dynamic behavior with their normal modes

vibrating at terahertz frequencies. Building on previous studies,

TDS experiments were performed identifying specific absorption

of terahertz radiation by met-hemoglobin and myoglobin, thus

verifying the “Protein Electrodynamic” hypothesis. Subsequent

studies have also demonstrated the utility of terahertz radiation as

a potential diagnostic modality for “Terahertz Medicine.”

I. INTRODUCTION AND BACKGROUND

roteins, often depicted as static structures, are quite

dynamic, with such motions being investigated

theoretically [1,2] and experimentally [3–6]. These vibrations

are essential to protein function [7, 8] and currently three

protein motion databases exist, cataloguing their normal

modes, experimental data, and molecular dynamics trajectories.

[9-11]

Using these databases, one study of over 4,000 example

proteins showed the majority had less than two low-frequency

modes [12], with these vibrations relating to conformational

shifts [13], and the lowest-frequency NMAs predicting, too, the

direction of these conformational changes. [14] Molecular

dynamics calculations and experimental studies have shown

these large-scale ‘low-frequency’ normal modes vibrate

generally in the 1012

hertz (terahertz) range. Neutron scattering

experiments on myoglobin, for example, showed a major

spectral peak between 450 – 600 GHz (15 – 20 cm-1

) [15]

While proteins are typically isoelectric, they exhibit surface

charges and dipoles [16, 17] Accelerating (vibrating) charges

radiate and absorb electromagnetic energy, as should proteins

as well: a concept we call: “Protein Electrodynamics.”

To verify this, time domain terahertz spectroscopy (TDS)

was performed on human met-hemoglobin at the Pohang

Accelerate Laboratory. [18, 19] Three major spectroscopic

patterns were observed: (1) broad absorption above 1.5THz, (2)

two mid-range resonances at 0.8 and 1.3THz, and (3)

lower-frequency emission. These spectroscopic features

correspond to the known characteristics of protein vibrations: a

broad spectrum of higher frequencies extending into the

infrared, as well as the functionally significant lower frequency

modes. [20] Beyond establishing proof-of-concept, such

experiments (and others [21]) have prepared the groundwork to

apply the ‘protein electrodynamic’ concept to novel approaches

in medical diagnosis and therapeutics, which we term,

“Terahertz Medicine.”

II. RESULTS

Following up on these studies, further experiments were

performed using the same procedures as outlined in [20] with

both bovine and human met-hemoglobin as well as human

myoglobin. In addition to reproducing the spectroscopic

features previously described, including the high-frequency

Stokes shift, other important results were obtained:

First, there was a difference at the higher (~ 1.1 – 1.5 THz)

frequencies between myoglobin and hemoglobin, of which the

former, a smaller molecule, absorbed more significantly at

these higher frequencies. Second, there was a species specific

difference between human and bovine hemoglobin at

approximately 0.6 THz, with human hemoglobin absorbing at

this frequency and the bovine variety showing the opposite. As

the three proteins share the same ‘globin’ fold, there were, also,

as expected, similarities between the three proteins, for

example with their lack of absorption at 0.5 THz.

This research further confirms the ‘Protein Electrodynamic’

hypothesis: that proteins interact with terahertz radiation, as

related to the underlying protein dynamics. The idea that

individual proteins might express unique spectroscopic

signals—coupled with the imaging properties of terahertz

radiation more generally—suggests an anatomic-molecular

imaging modality of great sensitivity and specificity, without

requiring exogenous probes, labels, or contrast.

III. DISCUSSION & CONCLUSIONS

Following up on these studies, further TDS experiments

were also conducted with both cancer and Alzheimer’s tissues

[22 – 28]. While these studies were not intended to elicit

specific protein spectral features, they substantiate spectral

normal and pathologic specimens can be distinguished

spectroscopically, thus serving as a basis for novel, more

biologically specific, medical diagnostic modalities. We

envision, too, that terahertz radiation, resonantly modulating

protein motions and hence protein function, can serve as a basis

entirely novel and powerful methods of medical therapeutics.

The use of tunable (CW) THz sources, particularly in the

sub-THz range, will be particularly important for such clinical

applications in order to minimize water absorption and

maximize radiative power at frequencies specific to the

proteins of interest.

Ogan Gurela,b

, Richard McKaya,c

, Seong-hoon Jeongd, Jaehun Park

d, Seong-Eon Ryu

e, Niru Nahar

f, Kubilay Sertel

f

a NovumWaves, Seoul, Korea,

b DRB Holdings, Busan, Korea,

c Full Spectrum Scientific, Princeton, USA,

d Pohang Accelerator Laboratory and

POSTECH, Pohang, Korea, e

Hanyang University, Seoul, Korea, f The Ohio State University, Columbus, Ohio, USA

Protein Electrodynamics & Terahertz Medicine: An Update

P

Page 2: OGurel THz-Bio v4

REFERENCES

[1] McCammon JA, Gelin BR and Karplus M, (1977), “Dynamics of

folded proteins,” Nature, 267:585-590.

[2] Korkut A and Hendrickson WA, (2009), “A force field for virtual

atom molecular mechanics of proteins,” Proc Natl Acad Sci USA,

106(37):15667-15672.

[3] Frauenfelder H, Petsko G, Tsernoglou D, (1979),

"Temperature-dependent X-ray diffraction as a probe of protein

structural dynamics," Nature, 280:558 – 563

[4] Mittermaier A and Kay LE, (2006), “New Tools Provide New

Insights in NMR Studies of Protein Dynamics,” Science,

312:224-228.

[5] Gabel F, Bicout D, Lehnert U, Tehei M, Weik M and Zaccaï G,

(2002), “Protein dynamics studied by neutron scattering,”

Quarterly Reviews of Biophysics, 35(4):327-367.

[6] Zaccaï G, (2000), “How Soft Is a Protein? A Protein Dynamics

Force Constant Measured by Neutron Scattering,” Science,

288(5471):1604-1607.

[7] Bennett WS and Steitz TA, (1978), “Glucose-induced

conformational change in yeast hexokinase,” Proc Natl Acad Sci

USA, 75(10):4848–4852.

[8] Karplus M and Kuriyan J, (2005), “Molecular dynamics and

protein function,” Proc Natl Acad Sci USA, 102(19):6679-85.

[9] Suhre K and Sanejouand Y-H, (2004), “ElNémo: a normal mode

web server for protein movement analysis and the generation of

templates for molecular replacement,” Nucleic Acids Res,

32:W610-4 (http://www.igs.cnrs-mrs.fr/elnemo/).

[10] Echols N, Milburn D and Gerstein M, (2003), “MolMovDB:

analysis and visualization of conformational change and

structural flexibility,” Nucleic Acids Res, 31:478-82

(http://www2.molmovdb.org/)

[11] MoDEL at Polytechnic University of Catalonia in Spain

(http://mmb.pcb.ub.es/MoDEL/).

[12] Krebs WG, Alexandrov V, Wilson CA, Echols N, Yu H, and

Gerstein M, (2002), “Normal mode analysis of macromolecular

motions in a database framework: using mode concentration as a

useful classifying statistic,” Proteins, 48:682–695.

[13] Tama F and Sanejouand Y-H, (2001), “Conformational Changes

of Proteins Arising From Normal Mode Calculations,” Protein

Engineering, 14:1–6.

[14] Alexandrov V, Lehnert U, Echols N, Milburn D, Engelman D and

Gerstein M, (2005), Protein Science, 14:633-643.

[15] Smith J, Kuczera K, and Karplus M, (1990), “Dynamics of

myoglobin: comparison of simulation results with neutron

scattering spectra,” Proc Natl Acad Sci USA, 87(4):1601–1605.

[16] Honig B and Nicholls A, (1995), “Classical Electrostatics in

Biology and Chemistry,” Science, 268(5214):1144-1149.

[17] Berg JM, (1987), “Metal Ions in Proteins: Structural and

Functional Roles,” Cold Spring Harbor Symposia on

Quantitative Biology, 52:579-585.

[18] Park J, Kang H-S, Kim C, (2008), “Electron-Linac based

femtosecond terahertz program at Pohang Accelerator

Laboratory,” Proceedings of FEL08, Gyeongju, Korea.

[19] Park J, Kim C, Lee J, Yim C, Kim CH, Lee J, Jung S, Ryu J, Kang

HS, and Joo T, (2011), “Generation, transport, and detection of

linear accelerator based femotosecond-terahertz pulses,” Rev Sci

Instrum, 82(10):013305.

[20] Gurel O, Park Jaehun and Ryu Seong-Eon (2013), “Time-domain

Terahertz Spectroscopy of met-Hemoglobin: Implications for

Novel Medical Imaging and Therapeutics,” SPIE Photonics West

BiOS: Terahertz and Ultrashort Electromagnetic Pulses for

Biomedical Applications.

[21] Acbas G, Niessen KA, Snell EH and Markelz AG (2013),

“Optical measurements of long-range protein vibrations,” Nature

Comm, 5: 3076.

[22] Yeo WG, Nahar NK, Hitchcock CL, Park S, Gurel O and Sertel

K, (2013),“Real-time THz Imaging of Human Tissue

Characteristics and Cancer Margins,” IRMMW-THz 2013.

[23] Rowe D, Lewis RJ, Lim EL, Alam S, Nilsson J, Baik C-W, Gurel

O, Wilkinson J, Richardson D, (2013), “Terahertz Spectroscopy

to Non-Destructively Probe and Modulate Protein

Electrodynamics: Fundamental Basis for THz Medicine,”

Bioelectrics 2013.

[24] Yeo WG, Nahar NK, Hitchcock CL, Park S, Gurel O and Sertel

K, (2014),“THz Spectroscopy and Imaging of Major Human

Organ Tissues for Cancer Margin Assessment,” 2014 IEEE

International Symposium on Antennas and Propagation.

[25] Yeo WG, Nahar NK, Hitchcock CL, Lehman NL, Park S, Gurel

O and Sertel K, (2014),“THz Imaging of Alzheimer’s Disease:

Spectroscopic Differentiation Between Normal and Diseased

Tissues,” IRMMW-THz 2014.

[26] Yeo WG, Nahar NK, Hitchcock CL, Lehman NL, Park S, Gurel

O and Kim MS, Sertel K, (2015),“THz Spectdrscopic Response

of Brain Tissue Exhibiting Alzheimer’s Disease,” 2015 IEEE

International Symposium on Antennas and Propagation.

[27] Yeo WG, Niru NK, Hitchcock CL, Park S, Gurel O, Sertel K,

(2016), “THz imaging of human lung and small intestine tissues

exhibiting malignancy,” Biomed. Phys. Eng. Express,

[submitted].

[28] Yeo WG, Nahar NK, Lehman NL, Park S, Gurel O and Kim MS,

Sertel K, (2016),“THz Spectroscopic Imaging of Human Brain

Tissue Exhibiting Alzheimer’s Disease,” [in preparation].