open data and open access - a biomedical data- and text-mining perspective
TRANSCRIPT
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Lars Juhl Jensen
Open data and open accessA biomedical data- and text-mining
perspective
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>10 km
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too much to read
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even more data
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unknown what is known
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molecular biology
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support for open science
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public databases
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data deposition required
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open access publishing
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integrative resources
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data/text mining
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knowledge overview
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string-db.org
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open licenses
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medicine
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Jensen et al., Nature Reviews Genetics, 2012
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opposition to open science
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clinical trial data hidden
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“research parasites”
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valid privacy concerns
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direct benefits for patients
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roadmap of diseases
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Jensen et al., Nature Communications, 2014
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6 million Danish patients
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pharmacovigilance
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Eriksson et al., Drug Safety, 2014
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discover new ADRs
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only 3,394 patients
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imagine Europe-wide studies