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Slide No.: 1 OpenGALEN Introduction to Clinical Introduction to Clinical Terminology and Terminology and Classification Classification Clinical Decision Support Clinical Decision Support L4 L4 AL Rector OpenGALEN TopThing UK The Medical Informatics Group, U of Manchester www.cs.man.ac.uk/mig/galen www.opengalen.org www.topthing.com [email protected]

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Page 1: OpenGALEN Slide No.: 1 Introduction to Clinical Terminology and Classification Clinical Decision Support L4 AL Rector OpenGALEN TopThing UK The Medical

Slide No.: 1 OpenGALEN

Introduction to Clinical Terminology Introduction to Clinical Terminology and Classification and Classification

Clinical Decision SupportClinical Decision SupportL4L4

AL Rector OpenGALEN TopThing UK

The Medical Informatics Group, U of Manchester

www.cs.man.ac.uk/mig/galenwww.opengalen.orgwww.topthing.com

[email protected]

Page 2: OpenGALEN Slide No.: 1 Introduction to Clinical Terminology and Classification Clinical Decision Support L4 AL Rector OpenGALEN TopThing UK The Medical

Slide No.: 2 OpenGALE

N

The VisionThe Vision

Best Practice

Clinical Terminology

Data Entry

Clinical Record

Decision Support

Best Practice

Data Entry

Electronic Health Records

Decision Support &Aggregated

Data

GALEN Clinical Terminology

HealthCard

Mr Ivor BigunMr Ivor BigunDun RoaminDun RoaminAnytownAnytownAny countryAny country4431 3654 902734431 3654 90273

Page 3: OpenGALEN Slide No.: 1 Introduction to Clinical Terminology and Classification Clinical Decision Support L4 AL Rector OpenGALEN TopThing UK The Medical

Slide No.: 3 OpenGALEN

OpenOpenGALEN: GALEN: PhilosophyPhilosophy

Terminology is software Terminology is the interface between people and machinesTerminology is the interface between people and machines

Re-use is the key Patient-centred informationPatient-centred information

Terminology must have a purpose Always ask: Always ask: “What’s it for?”“What’s it for?”

— Not art for art’s sakeNot art for art’s sake Terminology supports clinical applications - not vice versaTerminology supports clinical applications - not vice versa

– Applications for someone to do something for somebodyApplications for someone to do something for somebody– Keep the ‘Horse before the Cart’Keep the ‘Horse before the Cart’

Always ask: Always ask: “How will we know if it works?”“How will we know if it works?” “How will we know if it fails?” “How will we know if it fails?”

Page 4: OpenGALEN Slide No.: 1 Introduction to Clinical Terminology and Classification Clinical Decision Support L4 AL Rector OpenGALEN TopThing UK The Medical

Slide No.: 4 OpenGALEN

OpenOpenGALEN: GALEN: Key ideasKey ideas

Separation of kinds of knowledge Terminology, medical record and information system schemasTerminology, medical record and information system schemas Concepts, language, Coding, Indexing, PragmaticsConcepts, language, Coding, Indexing, Pragmatics Machine level, User level Machine level, User level

Knowledge is fractal! There will always be more detail to be addedThere will always be more detail to be added

— Therefore terminologies must be extensibleTherefore terminologies must be extensible

Formal logical Support Too big and complicated to maintain by handToo big and complicated to maintain by hand

— Extensibility requires rulesExtensibility requires rules— Software needs logical rigourSoftware needs logical rigour

Page 5: OpenGALEN Slide No.: 1 Introduction to Clinical Terminology and Classification Clinical Decision Support L4 AL Rector OpenGALEN TopThing UK The Medical

Slide No.: 5 OpenGALEN

Axes for kinds of KnowledgeAxes for kinds of Knowledge

Machine level

Human Level

Concepts

Language

Coding

Indexing

Pragmatics & User Interface

Terminology

Medical Records/Information systems

Page 6: OpenGALEN Slide No.: 1 Introduction to Clinical Terminology and Classification Clinical Decision Support L4 AL Rector OpenGALEN TopThing UK The Medical

Slide No.: 6 OpenGALEN

Uses of TerminologyUses of Terminology

Clinical Epidemiology and quality assuranceEpidemiology and quality assurance Reproducibility / ComparabilityReproducibility / Comparability IndexingIndexing

Software Re-useRe-use ! ! Integration and Messaging between systemsIntegration and Messaging between systems Authoring and configuring systemsAuthoring and configuring systems Data capture and presentation (user interface)Data capture and presentation (user interface) Indexing information and knowledge (meta-data, The Web)Indexing information and knowledge (meta-data, The Web)

Page 7: OpenGALEN Slide No.: 1 Introduction to Clinical Terminology and Classification Clinical Decision Support L4 AL Rector OpenGALEN TopThing UK The Medical

Slide No.: 7 OpenGALEN

History:History:Origins of existing Origins of existing

terminologiesterminologies Epidemiology

ICD - Farr in 1860s to ICD9 in 1979ICD - Farr in 1860s to ICD9 in 1979— International reporting of morbidity/mortalityInternational reporting of morbidity/mortality

ICPC - 1980sICPC - 1980s— Clinically validated epidemiology in primary careClinically validated epidemiology in primary care

Now expanded for use in Dutch GP softwareNow expanded for use in Dutch GP software

Librarianship MeSH - NLM from around 1900 - Index Medicus & MedlineMeSH - NLM from around 1900 - Index Medicus & Medline EMTree - from Elsevier in 1950s - EMBase EMTree - from Elsevier in 1950s - EMBase

Remumeration ICD9-CM (Clinical Modification) 1980ICD9-CM (Clinical Modification) 1980

— 10 x larger than ICD; aimed at US insurance reimbursement10 x larger than ICD; aimed at US insurance reimbursement

Page 8: OpenGALEN Slide No.: 1 Introduction to Clinical Terminology and Classification Clinical Decision Support L4 AL Rector OpenGALEN TopThing UK The Medical

Slide No.: 8 OpenGALEN

Traditional SystemsTraditional Systems Built by people for interpretation by people (Coding clerks)

Most knowledge Most knowledge implicit implicit in rubricsin rubrics— Must understand medicine to use intelligentlyMust understand medicine to use intelligently Not built for softwareNot built for software

On paper for use on paper EnumeratedEnumerated - top down all possibilities listed - top down all possibilities listed

— Serial - Single use - Single ViewSerial - Single use - Single View

Hierarchical Thesauri Traditional terminological techniques from librarianshipTraditional terminological techniques from librarianship

— ‘‘Broader than’ / ‘Narrower than’ (ISO 1087)Broader than’ / ‘Narrower than’ (ISO 1087) no logical foundationno logical foundation

Focused on ‘terms’ Language and concepts mixedLanguage and concepts mixed

— Synonyms, preferred terms, etc caused confusionSynonyms, preferred terms, etc caused confusion

Page 9: OpenGALEN Slide No.: 1 Introduction to Clinical Terminology and Classification Clinical Decision Support L4 AL Rector OpenGALEN TopThing UK The Medical

Slide No.: 9 OpenGALEN

History (2)History (2)

Pathology indexing SNOMED 1970s to 1990 (SNOMED International)SNOMED 1970s to 1990 (SNOMED International)

— First faceted or combinatorial systemFirst faceted or combinatorial system Topology, morphology, aetiology, functionTopology, morphology, aetiology, function Plus diseases cross referenced to ICD9Plus diseases cross referenced to ICD9

Specialty Systems Mostly similar hierarchical systemsMostly similar hierarchical systems

— ACRNEMA/SDM - RadiologyACRNEMA/SDM - Radiology— NANDA, ICNP… - NursingNANDA, ICNP… - Nursing— ……

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Slide No.: 10 OpenGALEN

History (3)History (3)

Early computer systems Read I (4 digit Read)Read I (4 digit Read)

— Aimed at saving space on early computersAimed at saving space on early computers 1-5 Mbyte / 10,000 patients1-5 Mbyte / 10,000 patients

— Hierarchical modelled on ICD9Hierarchical modelled on ICD9 Detailed signs and symptoms for primary careDetailed signs and symptoms for primary care Purchased by UK government in 1990Purchased by UK government in 1990

— Single useSingle use Morbidity indexingMorbidity indexing

Medical Entities Dictionary (MED) Medical Entities Dictionary (MED) — Jim CiminoJim Cimino

Page 11: OpenGALEN Slide No.: 1 Introduction to Clinical Terminology and Classification Clinical Decision Support L4 AL Rector OpenGALEN TopThing UK The Medical

Slide No.: 11 OpenGALEN

History (4)History (4)

Aspirations for electronic patient records (EPRs) Weed’s Problem Oriented Medical RecordWeed’s Problem Oriented Medical Record

— Direct entry by health care professionalsDirect entry by health care professionals

Aspirations for decision support Ted Shortliffe (MYCIN), Clem McDonald (Computer based Ted Shortliffe (MYCIN), Clem McDonald (Computer based

reminders), Perry Miller (Critiquing),..reminders), Perry Miller (Critiquing),..

Aspirations for re-use Patient centred informationPatient centred information

Needed common multi-use multi-purpose terminology None workedNone worked

Page 12: OpenGALEN Slide No.: 1 Introduction to Clinical Terminology and Classification Clinical Decision Support L4 AL Rector OpenGALEN TopThing UK The Medical

Slide No.: 12 OpenGALEN

Summary of Changes at end of Summary of Changes at end of 1st Generation1st Generation

From terminologies for people to terminologies for machines

From paper to software

From single use to multiple re-use for patient centred systems

From entry by coding clerks to direct entry by health care professionals

From pre-defined reporting for statistics to reliable indexing for decision support

Page 13: OpenGALEN Slide No.: 1 Introduction to Clinical Terminology and Classification Clinical Decision Support L4 AL Rector OpenGALEN TopThing UK The Medical

Slide No.: 13 OpenGALEN

Problems withProblems with‘First Generation’‘First Generation’

Enumerated Systems Enumerated Systems in coping with these changesin coping with these changes

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Slide No.: 14 OpenGALEN

Problems (1)Problems (1) Scaling !!!

More detail and more specialities required scaling up, but...More detail and more specialities required scaling up, but...

The combinatorial explosion Example: Burns:Example: Burns:

— 100 sites x 3 depths 100 sites x 3 depths 404 codes 404 codes 5 subsites/site x chemical or thermal 5 subsites/site x chemical or thermal 7272 7272

– x 3 extents x 3 durations x 3 extents x 3 durations 116,352

‘‘The Persian chessboard’The Persian chessboard’— 2264 64 1019

1019 grains of rice 100 billion tonnes of rice 1019 nanoseconds 10,000 years

Read II grew from 20,000 to 250,000 terms in ~100 staff-years Read II grew from 20,000 to 250,000 terms in ~100 staff-years — still too small to be usefulstill too small to be useful

but too big to use but too big to use

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Slide No.: 15 OpenGALEN

Problems (2)Problems (2)

Information implicit in the rubrics ““Hypertension excluding pregancy”Hypertension excluding pregancy”

— Computers can’t read!Computers can’t read! Invisible to softwareInvisible to software

No explicit information except the hierarchyNo explicit information except the hierarchy— Minimal support for softwareMinimal support for software— No opportunity to use softwre to helpNo opportunity to use softwre to help

Language and concepts confused SynonymsSynonyms Preferred termsPreferred terms HomonymsHomonyms Only simple look up and spelling correctionOnly simple look up and spelling correction

Page 16: OpenGALEN Slide No.: 1 Introduction to Clinical Terminology and Classification Clinical Decision Support L4 AL Rector OpenGALEN TopThing UK The Medical

Slide No.: 16 OpenGALEN

Problems (3)Problems (3) Mixed Organisation

‘‘Heart diseases’ in 13 of 19 chapters of ICDHeart diseases’ in 13 of 19 chapters of ICD— Tumours, infections, congenital abnormalities, toxic, …Tumours, infections, congenital abnormalities, toxic, …

‘‘Steroids’ in five chapters of standard drug classificationsSteroids’ in five chapters of standard drug classifications— Anti-inflammatories, anthi-asthmatics, …Anti-inflammatories, anthi-asthmatics, …

Unreliable for indexing or AbstractionsUnreliable for indexing or Abstractions— How to say something about ‘all heart diseases’?How to say something about ‘all heart diseases’?

Fixed organisation Single hierarchy - Single useSingle hierarchy - Single use

— Where to put ‘gout’ - arthritis or metabolic disease?Where to put ‘gout’ - arthritis or metabolic disease? Back and forth in each edition of ICDBack and forth in each edition of ICD

— No re-useNo re-use

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Slide No.: 17 OpenGALEN

Problems 3bProblems 3bThesauri rather than Thesauri rather than

ClassificationsClassificationsorgan } kind heart } part heart valve } kind aortic valve } part aortic valve cusp

A Mixed Hierarchy

disorder of organ

disorder of heart

disorder of valve in heart

disorder of aortic valve in heart

disorder of cusp in aortic valve in heart

A correct kind-of (subsumption) hierarchy

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Slide No.: 18 OpenGALEN

Problems (4)Problems (4) ‘Semantic identifiers’

Codes really paths - moving a concept meant changing its codeCodes really paths - moving a concept meant changing its code

3 Cardiovascular disorders……3.4 Disorders of Artery3.4 Disorders of Artery......

......3.4.2 Disorders of coronary artery3.4.2 Disorders of coronary artery......

……3.4.2.3 Coronary thrombosis3.4.2.3 Coronary thrombosis……

Easy to process but... Reorganisation requires changing codesReorganisation requires changing codes Codes cannot be permanentCodes cannot be permanent

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Slide No.: 19 OpenGALEN

Problems (5)Problems (5)

Maintenance 20 Years from ICD9 to ICD1020 Years from ICD9 to ICD10 ~100 person-years from Read 1 to Read 3~100 person-years from Read 1 to Read 3 Mega francs/guilders/crowns/marks on European coding schemesMega francs/guilders/crowns/marks on European coding schemes Thousands of unpaid hours of committee timeThousands of unpaid hours of committee time

— Impossible / meaningless decisions take longestImpossible / meaningless decisions take longest You can search forever for something that is not thereYou can search forever for something that is not there

— Multiple uses compete - Multiple uses compete - Must choose one useMust choose one use

– Most successful were clear about their purpose - ICD, ICPC, MeSHMost successful were clear about their purpose - ICD, ICPC, MeSH

Codes change meaning with version changes Old data misleading!Old data misleading!

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Slide No.: 20 OpenGALEN

Problems (6)Problems (6)

Version specific artefacts ““Not otherwise specified” (NOS)Not otherwise specified” (NOS)

— Used to move a general concept ‘down’Used to move a general concept ‘down’ Not elsewhere classified (NEC)Not elsewhere classified (NEC)

— Catch all - Nowhere else in coding system e.g. ‘Tumour not Catch all - Nowhere else in coding system e.g. ‘Tumour not elsewhere classified’ elsewhere classified’

dependent on version, dependent on version,

““Other”Other”— Catch all - Not listed below, e.g. “Other diseases of the Catch all - Not listed below, e.g. “Other diseases of the

cardiovascular system”cardiovascular system” dependent on versiondependent on version

Not used consistsently

Page 21: OpenGALEN Slide No.: 1 Introduction to Clinical Terminology and Classification Clinical Decision Support L4 AL Rector OpenGALEN TopThing UK The Medical

Slide No.: 21 OpenGALEN

Problem (7): Language is Problem (7): Language is slippery:slippery:

Two hands or Four?Two hands or Four?

Page 22: OpenGALEN Slide No.: 1 Introduction to Clinical Terminology and Classification Clinical Decision Support L4 AL Rector OpenGALEN TopThing UK The Medical

Slide No.: 22 OpenGALEN

Language/Concepts are Language/Concepts are slipperyslippery

Human cognition makes it look easy Logic fails to capture itLogic fails to capture it

— Classification is easy until you try to do itClassification is easy until you try to do it Trying since Aristotle in the West and Ancient Chinese in the EastTrying since Aristotle in the West and Ancient Chinese in the East

Words/Concepts mean what a community decides they mean Does a chimpanzee have four hands?Does a chimpanzee have four hands? Is a prion alive?Is a prion alive? Is surgery on the ovary a kind of ‘Endocrine surgery’?Is surgery on the ovary a kind of ‘Endocrine surgery’?

Easier to agree on the concrete than the abstract Easy to agree on useful abstractions and generalisationsEasy to agree on useful abstractions and generalisations

— Harder to agree on how to name themHarder to agree on how to name them

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Slide No.: 23 OpenGALEN

Problems (8)Problems (8)

There is no re-use - there is no standard The ‘grand challenge’: A common controlled vocabulary for medicineThe ‘grand challenge’: A common controlled vocabulary for medicine

— But But re-usere-use requires multiple different views requires multiple different views People’s needs differ / People do and find different thingsPeople’s needs differ / People do and find different things

— By professionBy profession Doctors and specialties, nurses, physiotherapiests, dentists…Doctors and specialties, nurses, physiotherapiests, dentists…

— By situationBy situation Inpatient, outpatient, primary care, community…Inpatient, outpatient, primary care, community…

— By taskBy task Diagnosis, management, prescribing, Diagnosis, management, prescribing, patient care, public health, quality assurance, management, planningpatient care, public health, quality assurance, management, planning

— By country and communityBy country and community US, UK, France, Germany, Japan, Korea, ... US, UK, France, Germany, Japan, Korea, ...

Page 24: OpenGALEN Slide No.: 1 Introduction to Clinical Terminology and Classification Clinical Decision Support L4 AL Rector OpenGALEN TopThing UK The Medical

Slide No.: 24 OpenGALEN

Summary of ProblemsSummary of Problems1st Generation Enumerated 1st Generation Enumerated

SystemsSystems Enumerated Single Hierarchies

List all possibilities in advanceList all possibilities in advance— Cannot cope with fractal knowledgeCannot cope with fractal knowledge

Most knowledge implicitMost knowledge implicit— Invisible to softwareInvisible to software

Can’t agree on common concepts and classificationCan’t agree on common concepts and classification— Unreliable for indexingUnreliable for indexing

Difficult to use for healthcare professionals No support for user interfaceNo support for user interface

Can’t build and maintain big classifications Language and concepts don’t translate easily to logic and softwareLanguage and concepts don’t translate easily to logic and software

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Slide No.: 25 OpenGALEN

Cimino’s Desiderata (1)Cimino’s Desiderata (1)

Concept orientation Separate language (terms) and concepts (codes)Separate language (terms) and concepts (codes)

Concept permanence Never re-use a code (‘retire’ it)Never re-use a code (‘retire’ it)

Nonsemantic concept identifiers Separate the code from the pathSeparate the code from the path

Polyhierarchy Allow one concept to be classified in multiple waysAllow one concept to be classified in multiple ways

— Gout can be Gout can be bothboth a metabolic disease and an arthritis a metabolic disease and an arthritis

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Slide No.: 26 OpenGALEN

Cimino’s Desiderata (2)Cimino’s Desiderata (2)

Formal Definitions i.e ‘Be compositional’i.e ‘Be compositional’

Reject ‘Not elsewhere classified’ concept permanence and NECconcept permanence and NEC

Multiple granularities Organ, tissue, cellular, molecularOrgan, tissue, cellular, molecular Grades, types, classes of diseasesGrades, types, classes of diseases Special clinical criteriaSpecial clinical criteria

Multiple consistsent views Allow different organisationsAllow different organisations

— e.g. functional, anatomical, pathologicale.g. functional, anatomical, pathological

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Slide No.: 27 OpenGALEN

Cimino’s Desiderata (3)Cimino’s Desiderata (3)

Represent context Family history, risk, source of informationFamily history, risk, source of information

Evolve gracefully Allow controlled changesAllow controlled changes

Recognise redundancy (equivalence) ‘‘Carcinoma’ + ‘Lung’ ?=? ‘Carcinoma of the lung’Carcinoma’ + ‘Lung’ ?=? ‘Carcinoma of the lung’

— How would we know?How would we know? How could How could a machinea machine know? know?

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OpenGALEN

Solution Generation 1Solution Generation 1Megaterm + Crossmapping = UMLSMegaterm + Crossmapping = UMLS

Clinical Applications

Medical Records

Data entry

Decision support

UMLS

Medical Records

Data entry

Decision support

MEGA-TERM

Coding &Classification

ICD-9 ICD-10

MeSHACRNEMA

ICPC

SNOMED Axes

READ

OPCS

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Slide No.: 29 OpenGALEN

Unified Medical Language System (UMLS) from US National Library of Medicine

Defacto common registry for vocabulariesDefacto common registry for vocabularies— Concept Unique Identifiers (CUIs) and Lexical Unique Identifiers Concept Unique Identifiers (CUIs) and Lexical Unique Identifiers

(LUIs) are defacto the common nomenclature (LUIs) are defacto the common nomenclature

Solution 1 Cross-mapping & Solution 1 Cross-mapping & UMLS UMLS

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Slide No.: 30 OpenGALEN

Solution 1 Cross-mapping & Solution 1 Cross-mapping & UMLS UMLS

An invaluable resource, but... No better than the vocabularies which are mappedNo better than the vocabularies which are mapped

— Limited detail for patient careLimited detail for patient care— Unreliable for indexing or abstraction of knowledgeUnreliable for indexing or abstraction of knowledge— Best for relating everything to MeSH for indexing literatureBest for relating everything to MeSH for indexing literature

Still limited by combinatorial explosionStill limited by combinatorial explosion— Still can’t cope with fractal knowledgeStill can’t cope with fractal knowledge

Not extensible - no help in building or extending terminologieseNot extensible - no help in building or extending terminologiese No help in reorganising existing terminologies to re-use for new No help in reorganising existing terminologies to re-use for new

purposespurposes Top downTop down

Information still implicitInformation still implicit— Minimal help with softwareMinimal help with software

No help with data capture, user interfacesNo help with data capture, user interfaces

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Slide No.: 31 OpenGALEN

Solutions Generations 2-3Solutions Generations 2-3Compositional SystemsCompositional Systems

Beat the combinatorial explosion Build concepts out of pieces - leggo Build concepts out of pieces - leggo

— Dictionary and grammar rather than phrasebookDictionary and grammar rather than phrasebook But hardBut hard

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Slide No.: 32 OpenGALEN

Solution Generation 1.5: FacetedSolution Generation 1.5: Faceted Faceted systems: SNOMED International

— Inflammation + Lung + Infection + Pneumococcus Inflammation + Lung + Infection + Pneumococcus Pneumoccal pneumonia Pneumoccal pneumonia

Limit combinatorial explosion, but… Rigid - a limited number of axes / facets / chaptersRigid - a limited number of axes / facets / chapters Each facet has the problems of a first generation enumerated systemEach facet has the problems of a first generation enumerated system

— Much knowledge still implicitMuch knowledge still implicit No way to know how identifiers relateNo way to know how identifiers relate

— No explicit relations, only ‘+’No explicit relations, only ‘+’— No way to recognise redundancy / equivalenceNo way to recognise redundancy / equivalence— No help with data capture or user interface / No way to recognise nonsenseNo help with data capture or user interface / No way to recognise nonsense

Carcinoma + Hair + Donkey + Emotional Carcinoma + Hair + Donkey + Emotional ???? ????

Still can’t cope with fractal knowledgeStill can’t cope with fractal knowledge— Limited extensibility: limited help with building, extending or reorganisingLimited extensibility: limited help with building, extending or reorganising

Still Top DownStill Top Down

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Slide No.: 33 OpenGALEN

Generation 2: Enumerated Generation 2: Enumerated CompositionalCompositional

Read III with qualifiers— Inflammation: site: lung, cause: pneumococcus Inflammation: site: lung, cause: pneumococcus Pnemococcal Pneumonia Pnemococcal Pneumonia

More semantics but… Limited qualifiers - limited views - limited re-useLimited qualifiers - limited views - limited re-use Limited help with data capture - User interface difficultLimited help with data capture - User interface difficult Much information still implicit - limited software supportMuch information still implicit - limited software support

— No way to recognise redundancy / equivalence / errorsNo way to recognise redundancy / equivalence / errors— Organisation still mixed - indexing better but still unreliableOrganisation still mixed - indexing better but still unreliable

Limited separation of language and concepts Limited separation of language and concepts Still can’t cope with fractal knowledgeStill can’t cope with fractal knowledge

— Limited extensibility; limited help with building and reorganising terminologiesLimited extensibility; limited help with building and reorganising terminologies Top down Top down

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Slide No.: 34 OpenGALEN

CT VocabularyCT Vocabulary

“Reference Terminology” vs “Interface Terminologies” Reference terminology = enumerated hierarchy of formally Reference terminology = enumerated hierarchy of formally

defined termsdefined terms Interface terminology = navigation structure for user interfaceInterface terminology = navigation structure for user interface

— Explicitly excluded from SNOMED-RTExplicitly excluded from SNOMED-RT

“Terming”, “Coding”, and “Grouping” Terming - finding the lexical stringTerming - finding the lexical string Coding - finding the correct unique code (concept)Coding - finding the correct unique code (concept) Grouping - putting codes into groupers for epidmiological or Grouping - putting codes into groupers for epidmiological or

other purposesother purposes

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Slide No.: 35 OpenGALEN

Generation 2.5 Pre-coordinatedGeneration 2.5 Pre-coordinatedFormal CompositionsFormal Compositions

SNOMED-RT (SNOMED-CT?)— Formal logical model for classifying a fixed list of definitionsFormal logical model for classifying a fixed list of definitions— Simple fixed ontology (7 links)Simple fixed ontology (7 links)

GALEN derived terminologies UK Drug OntologyUK Drug Ontology Procedure classificationsProcedure classifications

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Slide No.: 36 OpenGALEN

Generation 2.5 Pre-coordinatedGeneration 2.5 Pre-coordinatedFormal Compositions More Formal Compositions More

semanticssemantics Limited ability to cope with combinatorial explosion

Any one pre-coordinated terminology of fixed sizeAny one pre-coordinated terminology of fixed size— but arbitrarily many terminologies might be derivedbut arbitrarily many terminologies might be derived

Limited ability to cope with fractal knowledge Limited extensibilityLimited extensibility

— Extensibility requires access to ‘Workbench’Extensibility requires access to ‘Workbench’— Bottom up / middle outBottom up / middle out

More explicit information Logical criteria for correctness / redundancy / equivalenceLogical criteria for correctness / redundancy / equivalence

— Based on knowledge representation (ontologies) and description logicsBased on knowledge representation (ontologies) and description logics

Limited support for data capture and user interface

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Slide No.: 37 OpenGALEN

Generation 3: Post-Generation 3: Post-Coordinated Formal Concept Coordinated Formal Concept

Model with Constraints Model with Constraints delivered as Software Servicesdelivered as Software Services

OpenGALEN Reference Model - PEN&PAD/Clinergy™— Inflammation Inflammation whichwhich hasCause (Infection hasCause (Infection whichwhich hasCause Pneumococcus) hasCause Pneumococcus) PneumococcalPneumonia PneumococcalPneumonia “Pneumococcal “Pneumococcal

Pneumonia”Pneumonia”

A dictionary and grammar rather than a phrase book

Software rather than data

A sound logical and ontological foundation

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Slide No.: 38 OpenGALEN

Generation 3: Post-Generation 3: Post-Coordinated Formal Concept Coordinated Formal Concept

ModelsModels Copes with combinatorial explosion

Indefinitely many compositions possibleIndefinitely many compositions possible— Lists not pre-enumeratedLists not pre-enumerated

Copes with fractal knowledgeCopes with fractal knowledge— Easily extensible to add more detailEasily extensible to add more detail

Most information explicit More comprehensive ontology (50-250 links)More comprehensive ontology (50-250 links)

Good support for data capture / user interface But requires additional pragmatic knowledge layerBut requires additional pragmatic knowledge layer

Separates user view and machine view Intermediate representation vs GRAILIntermediate representation vs GRAIL

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Slide No.: 39 OpenGALEN

Case Study 1: Case Study 1: The exploding bicycleThe exploding bicycle

ICD-9 (E826) 8

READ-2 (T30..) 81

READ-3 87

ICD-10 (V10-19) 587 V31.22 Occupant of three-wheeled motor vehicle injured in collision with pedal cycle, person

on outside of vehicle, nontraffic accident, while working for income

W65.40 Drowning and submersion while in bath-tub, street and highway, while engaged in sports activity

X35.44 Victim of volcanic eruption, street and highway, while resting, sleeping, eating or engaging in other vital activities

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Slide No.: 41 OpenGALEN

Defusing the exploding bicycle:Defusing the exploding bicycle:500 codes in pieces500 codes in pieces

10 things to hit… Pedestrian / cycle / motorbike / car / HGV / train / unpowered Pedestrian / cycle / motorbike / car / HGV / train / unpowered

vehicle / a tree / othervehicle / a tree / other

5 roles for the injured… Driving / passenger / cyclist / getting in / otherDriving / passenger / cyclist / getting in / other

5 activities when injured… resting / at work / sporting / at leisure / otherresting / at work / sporting / at leisure / other

2 contexts… In traffic / not in trafficIn traffic / not in traffic

V12.24 Pedal cyclist injured in collision with two- or three-wheeled motor vehicle, unspecified pedal cyclist, nontraffic accident, while resting, sleeping, eating or engaging in other vital activities

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Goodbye to picking lists…Goodbye to picking lists… Structured Data Entry

File Edit Help

What you hit

Your Role

Activity

Location

Cycling Accident Cycling Accident

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Slide No.: 43 OpenGALEN

Other important links and Other important links and initiativesinitiatives

HL7 Vocabulary group See HL7 web siteSee HL7 web site

— Or join list serverOr join list server

SNOMED-DICOM-Microglossary (Radiology)

Nursing initiatives - see Nick Hardiker papers

ISO TC215 WG2 / CEN TC251 WG3 See web sitesSee web sites

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Slide No.: 44 OpenGALE

N

Criteria for successCriteria for success

Re-use A recognised growing library of common decsision support A recognised growing library of common decsision support

modulesmodules— Stop starting from scratch!Stop starting from scratch!

Integration 2+ independently developed DSSs 2+ independently developed DSSs integrated withintegrated with

2+ independently developed EPRS 2+ independently developed EPRS withoutwithoutexponentially increasing effort. exponentially increasing effort.

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N

Criteria for successCriteria for success

Authoring No individual invests in their own terminologyNo individual invests in their own terminology

— enterprise-wide terminology serversenterprise-wide terminology servers

Indexing Simplification of systems Simplification of systems

— a sharp drop in special cases and exceptionsa sharp drop in special cases and exceptions— a sharp increase in authors’ productivitya sharp increase in authors’ productivity

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N

Criteria for successCriteria for success

User interfaces Real systems in real use with real patients by real cliniciansReal systems in real use with real patients by real clinicians

— transparent systemstransparent systems

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Slide No.: 47 OpenGALEN

OpenOpenGALENGALEN

www.opengalen.org