part i: general information date prepared: february 2, 2015 · 1 part i: general information date...

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PART I: General Information DATE PREPARED: February 2, 2015 Name: Peter Kraft Office Address: 665 Huntington Avenue Bldg 2 Room 249B Boston, MA 02115 Home Address: 54 Gold Star Road Cambridge, MA 02140 Work E-Mail: [email protected] Work FAX: (617) 432-1722 Place of Birth: Michigan, USA Education:

1993 B.A. Mathematics, University of Michigan

1993 B.A. German, University of Michigan

1996 M.A. Applied Mathematics, University of Southern California

1998 M.A. Biostatistics, University of Southern California

2002 Ph.D. Biostatistics, University of Southern California

Postdoctoral Training:

2002 - 2003 Postdoctoral Fellow, Department of Biostatistics, University of California, Los Angeles, CA

Academic Appointments:

1994 - 1996 Teaching Assistant, Department of Mathematics, University of Southern California, Los Angeles, CA

1997 - 1998 Research Assistant, Department of Preventive Medicine, University of Southern California, Los Angeles, CA

2003 - 2008 Assistant Professor, Departments of Epidemiology and Biostatistics, Harvard School of Public Health, Boston, MA

2008 - 2012 Associate Professor, Departments of Epidemiology and Biostatistics, Harvard School of Public Health, Boston, MA

2012 - Professor, Departments of Epidemiology and Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA

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Hospital or Affiliated Institution Appointments:

1998 - 2001 Chief Consultant, Statistical Consultation and Research Center, University of Southern California, Los Angeles, CA

1998 - 2002 Statistician, Department of Preventive Medicine, University of Southern California, Los Angeles, CA

2007 - Member, Dana-Farber/Harvard Cancer Center, Cancer Epidemiology and Biostatistics Programs

Other Professional Positions and Major Visiting Appointments:

2005 - 2008 Consultant, National Cancer Institute, Cancer Genetic Markers of Susceptibility (CGEMS) study

2006 - 2009 Consultant, National Cancer Institute, PanScan study

2009 - Associate member, Broad Institute, Cambridge, MA

2014- Consultant, Merck & Co.

Administrative Responsibilities

2003 - 2006 Organizer, Gene Environment Interaction Seminar Series, Harvard School of Public Health

2009 -2014 Deputy Director, Program in Genetic Epidemiology and Statistical Genetics, Harvard School of Public Health

2009 – Co-Director, Program in Quantitative Genomics, Harvard T.H. Chan School of Public Health

2014-

Director, Program in Genetic Epidemiology and Statistical Genetics, Harvard T.H. Chan School of Public Health

2014- Faculty Director, Harvard Bioinformatics Core

Committee Assignments:

2004 - Member, Program in Genetic Epidemiology and Statistical Genetics Admissions Committee

2004 - 2009 Member, Bioinformatics Core Advisory Group

2004 - 2006 Member, Biostatistics Seminar Series Committee

2004 - 2005 Member, Biostatistics Teaching Effectiveness Committee

2006 - 2007 Member, Biostatistics Curriculum Committee (Bioinformatics Subcommittee)

2007 - 2009 Member, HSPH Strategic Initiative in Genes and Environment Advisory Committee

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2007 - 2011 Member, Steering Committee, NHGRI PhenX Project

2007 - 2011 Liaison, Demographics Working Group

2010 - 2011 Liaison, Social Environment Working Group

2008 - 2009 Member, Program in Genetic Epidemiology and Statistical Genetics Faculty Search Committee

2009, '11, '14 Co-organizer, Program in Quantitiative Genomics Annual Conference

2010 - 2012 Member, The NIDA Genes, Environment, and Development Initiative (GEDI) Advisory Committee

2010 - 2013 Member, Gene Environment Interaction and Disparities Working Group, Harvard/MGH Center on Genomics, Vulnerable Populations and Health Disparities

2010 - 2011 Member, Harvard Catalyst Health Disparities Research Program Advisory Committee

2011 - 2012 Member, Organizing Committee, NCI Think Tank on Gene Environment Interactions

2011 - 2013 Member, Massachusetts General Hospital Analytic and Translational Genetics Unit Faculty Search Committee

2012 - Member, Department of Biostatistics Admissions Committee

2012 - Co-Chair, Steering Committee, Breast and Prostate Cancer Cohort Consortium

2012 - Chair, Analytic Working Group, NCI “post-GWAS” GAME-ON consortium

2013 - Co-Director, AACR Integrative Molecular Epidemiology Workshop

2013 - Member, Executive Committee, MS in Computational Biology and Quantitative Genetics, Harvard T.H. Chan School of Public Health

2014 - Member, Department of Biostatistics Faculty Search Committee

2014 - Member, Harvard Operating Committee for Research Computing

2014 Member, Organizing Committee, NIH Gene-environment Interaction Studies Workshop

Professional Societies:

1999 - Member, International Genetic Epidemiology Society (IGES)

2008 - 2010 Member, IGES Scientific Program Committee

2009 - 2013-

Member, IGES Board of Directors Member, IGES Publications Committee

2002 - Member, American Statistical Association

2011 Member, Byar Award Review Committee

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2003 - Member, American Society for Human Genetics

2004 - Member, American Association for Cancer Research

2011 - 2013

Member, AACR Integrative Cancer Epidemiology Workshop Planning Committee

Editorial Activities:

Editorial Boards:

2008 - 2010 Associate Editor, Cancer Causes and Control

2010 - 2012 Associate Editor, Statistics in Medicine

2011 - Member, Editorial Board, Genetic Epidemiology

2013 - Member, Editorial Board, Epidemiology

2015 - Member, Ediorial Board, Journal of the National Cancer Institute

Reviewer:

2005 - 2006 Cancer Research UK

2007 - 2009 Center for Inherited Disease Research

2007 European Commission’s 7th Framework Programme for Research

2009 NIMH Special Emphasis Panel

2009 NIMH GO Grant Review Panel

2009 NINDS GO Grant Panel

2009 NCI Intramural Program Site Visit

2009 AXA Foundation

2010 Research Grants Council, Hong Kong Special Administrative Region

2010 AAAS Research Competitiveness Service

2011 American Statistical Association Byar Award Review Committee

2011 NIH Genomics, Computational, Biology, and Technology Study Section

2012 Genome Canada: 2012 Large-Scale Applied Research Project Competition in Genomics and Personalized Health

2014 Ad hoc Member, CASE/EPIC Study Section

2014 - Member, Center for Inherited Disease Research Access Committee

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Ad hoc reviewer for:

American Journal of Epidemiology, American Journal of Human Genetics, Bioinformatics, Biostatistics, BMC Genetics, Breast Cancer Research, Cancer Epidemiology Biomarkers and Prevention, Cancer Research, Epidemiology, European Journal of Human Genetics, Genetic Epidemiology, Genome Medicine, Human Genetics, Human Heredity, Human Molecular Genetics, Nature Genetics, Nature Reviews Genetics, New England Journal of Medicine, PLoS Genetics, Proceedings of the National Academy of Sciences, Statistical Science

Awards and Honors:

1993 Magna cum laude, Mathematics, University of Michigan

1993 Magna cum laude, German, University of Michigan

2007 Junior Faculty Sabbatical Award, HSPH

2012 Inaugural Robert Welch Memorial Lecturer

Part II: Research, Teaching, and Clinical Contributions A. Narrative report of Research, Teaching, and Clinical Contributions. My research concentrates on the design and analysis of genomic association studies, with particular emphasis on studies linking variation in germline DNA to cancer risk and prognosis. I have published on haplotype analysis, genotype imputation, cost-saving multi-stage designs for genome-wide association studies (GWAS), heritability analyses using GWAS data, integrating gene-environment and gene-gene interaction into the analysis of GWAS, and genetic risk prediction. My current methodological research focuses on 1) efficient and interpretable "gene x environment interaction" analyses, 2) genetic risk prediction using common and rare genetic variation, biomarkers (including metabolites), and clinical and environmental risk factors, and 3) methods linking low-frequency variation, emerging functional annotation, and risk of complex disease. I have played a key role in multiple international consortia studying the genetics of cancer risk over the last ten years. I have been a member of the statistical working group of the Breast and Prostate Cancer Cohort Consortium (BPC3) since its inception, and am currently co-chair of the BPC3's steering committee; I played a leading role in the design and analysis of GWAS of breast, prostate and pancreatic cancers as part of the NCI’s Cancer Genetic Markers of Susceptibility and PanScan projects; and I chair the Analytic Working Group for the NCI's "post-GWAS" GAME-ON consortium, which aims to better understand the biological mechanisms underlying GWAS-identified cancer risk markers at five cancer sites (including breast and lung) and their public health implications. I am also the contact PI for the epidemiology project of the breast cancer arm of GAME-ON, which focuses on gene-environment interactions and risk prediction.

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B. Funding Information

1. Current funded research

2011-2015 The MedSeq Project: Integration of Whole Genome Sequencing into

Clinical Care NIH/NHGRI- U01HG006500 PI: Green Role: Statistician

2012-2015 Genetic modifiers of the effect of intensive glycemic control on CVD risk NIH/NHLBI (Joslin sub to HSPH) - R01 HL110400-01 PI: Doria Role: Co-investigator/Subcontract PI

2010 - 2015 Dietary and Hormonal Determinants of Cancer in Women NIH (BWH sub to HSPH) - 2P01CA87969-11 PI: Hankinson Role: Co-investigator/Subcontract PI

2010 - 2015 Discovery Biology and Risk of Inherited Variants in Breast Cancer NIH/NCI - U19 CA148065-01 Direct costs: $2,276,940 PI: Hunter Role: Co-Principal Investigator, Contact PI for Project 3

2010 - 2015 Elucidating Loci Involved in Prostate Cancer Susceptibility NIH/NCI (USC sub to HSPH) - U19 CA148537-01 PI: Henderson Role: Principal Investigator

2013-2018

Genetic and Environmental Risk Factors for Venous Thromboembolism NIH (BWH sub to HSPH)- R01 HL116854 PI: Kabrhel Role: Co-Investigator

2012-2016 Semiparametric Methods for Gene-environment Interaction NIH-R01 ES020337 PI: Tchetgen Role: Co-Investigator

2013-2015 Exploring the Interaction between Serum 25(OH)D, Vitamin D Metabolism Gene Variants, RNA Expression and MS Progression National Multiple Sclerosis Society- RG4875A5/1 PI: Ascherio Role: Co-Investigator

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2013-2018

Statistical Informatics for Cancer Research NIH/NCI- 2P01CA134294-06 PI: Lin Role: Co-Investigator

2013-2017 Prospective Study of Biomarkers and Risk Factors for ALS Incidence and Progression NIH/NINDS- 2R01NS045893 PI: Ascherio Role: Co-Investigator

2013-2017 Statistical Methods for Studies of Rare Variants NIH (sub from BWH)- R01 MH101244-01 PI: Sunyaev Role: Co-Principal Investigator

2013 – 2018

Integrative Molecular Epidemiology Workshop NIH- R25 CA174664 PI: Sellers Role: Co-Investigator

2013-2018 Improving Polygenic Prediction using Large Next-generation Data Sets NIH (sub from BWH)- R01 GM105857-01A1 PI: Sunyaev Role: Co-Investigator

2014-2016 Genome-wide gene-caffeine interactions on risk of skin basal cell carcinomaNIH- R03 CA188568 PI: Han Role: Site Principal Investigator

2014-2019

Long Term Multidisciplinary Study of Cancer in Women: The Nurses’ Health Study NIH- UM1 CA186107 PI: Stampfer Role: Co-Investigator

2014-2016

Prioritizing Follow-up of GWAS Loci using Genetic and Functional Annotation Data NIH- R21 CA182821 PI: Lindström Role: Co-Investigator

2014-2019

Risk and Penetrance of Mutations from Breast Cancer Testing Panels NIH- R01 CA192393 PI: Couch Role: Site Principal Investigator

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2014-2016 Genome-wide Interactions with Diet Patterns on Long-term Weight ChangeNIH- R21 HL126024 PI: Qi Role: Site Principal Investigator

2. Pending grants (partial)

2013 - 2017 Prospective Cohort Studies of Inflammatory Bowel Disease NIH (sub from BWH)- R01 DK097338 PI: Chan Role: Co-Investigator

2014 - 2018 Sex Steroids, Genetic Variants and Risk of ER- and Triple-Negative Breast Cancer NIH (sub from UMass Amherst)- R01 PI: Hankinson Role: Co-Investigator

2015 - 2018 Low-frequency and rare DNA variants and risk of breast cancer NIH/NCI R01 PI :Kraft

2014 - 2016 Leveraging GxE interaction to understand pancreatic cancer and altered metabolism NIH/NCI R21 PI: Kraft

3. Past funded research (partial)

1999 - 2009 Genetic Susceptibility to Endometrial Cancer NIH/NCI - R01 CA082838-06A2 PI: De Vivo Role: Co-investigator

2000 - 2008 Molecular Epidemiology of ARDS NHLBI - R01 HL060710 PI: Christiani

2003 – 2007 Breast and Prostate Cancer and Hormone Related Gene Variants NCI - U01CA098233 PI: Hunter

2003 – 2008 2003-2013

Folate, One-Carbon Nutrients, Gene-Variants and Colon Cancer NCI - U54 CA100971 PI: Hunter Boston Obesity Nutrition Research Center NIH/NIDDK PI: Fried Role: Statistical geneticist

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2004 - 2006 Statistical Software for Haplotype and Haplotype x Environment Association Studies NIEHS Center Pilot Project Grant PI: Kraft

2004 - 2008 Dietary fatty acids, PPAR-activated genes and heart disease NHLBI - RO1 HL071888 PI: Campos

2005 - 2008 Gene by environment interactions in asthma and allergies NIAID - 1R01AI056230-01A2 PI: Litonjua

2006 - 2008 Clock genes, night work, and breast cancer risk NCI - 1R01 CA114534-01 PI: Schernhammer

2006 - 2009 Measurement Errors in Cancer Epidemiology NCI - R01 CA50597 PI: Spiegelman

2007 - 2009 Genes and Environment Initiatives in Type 2 Diabetes NHGRI - U01 HG004399 PI: Hu

2007 – 2009 Cohort Study of Genetic Susceptibility to Breast Cancer NIH/NCI - R01 CA065725 PI: Hunter

2007-2012

Characterizing Genetic Susceptibility to Breast and Prostate Cancer; The BPC3 NIH/NCI (sub from BWH)- U01 CA098233 PI: Hunter Role: Statistician

2007 - 2013 Prospective Studies of Diet and Cancer in Men and Women NIH/NCI - P01 CA055075 PI: Willett Role: Statistical Geneticist

2008 - 2009 Prospective Cohort Collaborative in Pancreatic Cancer Epidemiology and Pathogenesis NCI - R01 CA124908 PI: Fuchs

2008 - 2009 Cohort Study of Genetic Susceptibility to Cutaneous Malignant Melanoma NCI - R01 CA122838-01A2 PI: Han

2005 - 2010 Dietary and Hormonal Determinants of Cancer in Women (Core A and D) NIH/NCI - P01 CA087969 (HSPH subcontract) PI: Hankinson Role: Co-Investigator/Statistical Geneticist

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2006 - 2010 Estrogen and Progesterone-Related Gene Variants and Colorectal Cancer Risk NIH/NCI - R01 CA123089 PI: Zhang Role: Co-Investigator

2008 - 2010 Genetics of Coronary Disease in Type 2 Diabetes NIH/NHLBI - R01 HL073168 PI: Doria Role: Co-Investigator

2008 -2010 Sex Steroid Hormones, Gene Variants, and Colorectal Cancer NIH - R01CA126846-01A2 PI: Lin Role: Statistician

2009 - 2010 Urate as a Predictor of Parkinson's Disease Risk and ProgressionNINDS - 1R01NS061858-01A1 PI: Ascherio Role: Co-Investigator

2009 -2013 Genetic Markers of CHD in Type 2 Diabetes NIH/NHLBI - R01 HL071981 PI: Qi Role: Statistician

2007 - 2011 2009-2012

Cysteine, Related Gene Variants, and Breast Cancer Risk NIH/NCI - R01 CA124857 PI: Willett Role: Statistical Geneticist Genome-Wide Association Study of Endometrial Cancer NIH/NCI (BWH sub to HSPH) - R01 CA134958 PI: Devivo Role: Co-investigator

2010-2012 Sequencing Regions Associated with Breast Cancer Risk in European and African Americans NIH- U01 HG005922-01 PI: Kraft Role: Principal Investigator

2009 - 2012 Evaluating the Clinical Validity of Novel Gene-Environment Risk Profiles NIH/NIDDK - R21 DK084529 PI: Kraft Role: Principal Investigator

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2007 – 2012 2012-2013 2012-2014 2012-2015

The Pathobiology of Nephrolithiasis NIDDK - P01 DK070756-01A1 PI: Curhan Role: Co-Investigator/Statistical Geneticist The NEIGHBORHOOD: POAG Heritable Overall Operational Database NIH/NEI (MEEI sub to HSPH) PI: Wiggs Role: Co-Investigator/Subcontract PI GWAS on Childhood Body Fatness as an Intermediate Phenotype of Breast Cancer NIH- R03 CA165131-01A1 PI: Lindström Role: Co-Investigator Methods to Identify Genetic Markers that Interact with Multiple Environmental Exposures NIH- R21 CA165920 PI: Kraft Role: Principal Investigator

C. Report of Current Research Activities Dr. Kraft's research concentrates on the design and analysis of genetic association studies, with particular emphasis on studies linking variation in germline DNA to cancer risk. He has played a key role in multiple international consortia studying the genetics of cancer risk over the last ten years: Dr. Kraft has been a member of the statistical working group of the Breast and Prostate Cancer Cohort Consortium since its inception; he played a leading role in the design and analysis of GWAS of breast, prostate and pancreatic cancers as part of the NCI’s Cancer Genetic Markers of Susceptibility and PanScan projects; and he chaired the Analytic Working Group for the NCI's "post-GWAS" GAME-ON consortium, which aims to better understand the biological mechanisms underlying GWAS-identified cancer risk markers at five cancer sites (including breast and lung) and their public health implications. Dr. Kraft oversees the GWAS and sequencing data repository and analysis core for the Nurses' Health Study and Health Professionals Follow-up Study. This includes GWAS data on over 20,000 subjects and high-coverage whole genome sequencing data on 30 early-onset, family history positive breast cancer cases, which have been generated as part of the GAME-ON project. Dr. Kraft's current methodological research focuses on methods that link low-frequency variation, emerging functional annotation, and risk of complex disease, as well as genetic risk prediction using common and rare genetic variation as well as clinical and environmental risk factors. D. Report of Teaching

1. Local contributions

a. Harvard School of Public Health

2004 - 2005 Fundamental Concepts of Gene Mapping Grading Instructor (with C Lange Co-Instructor) 35 students; 30 hours / year

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2005 - 2006 Statistical Genetics of Complex Human Disease Co-Instructor (with C Lange Grading Instructor) 20 students; 30 hours / year

2006 Advanced Topics in Epidemiologic Methods Grading Instructor 5 students; 15 hours / year

2006 – 2008, 2010

Analysis of Genetic Association Studies Grading Instructor 15 students; 30 hours / year

2009 Advanced Topics in the Analysis of Case Control and Cohort Studies Co-Instructor (with F Cook and E Tchetgen Co-Instructors) 60 students; 60 hours / year

2010- Advanced Topics in the Analysis of Case Control and Cohort Studies Grading Instructor Instructor (with L. Chibnik Co-Instructor) 50 students; 60 hours/year

2010- Genetic Epidemiology Grading Instructor (with David Hunter [2010-2011] and Liming Liang [2012-] Co-Instructor) 50 students; 60 hours/year

b. Local invited teaching presentations

2004 Finding a needle in a stack of other needles: challenges and

opportunities in human genome epidemiology Racebrook Environmental Statistics Retreat

2004 SNP selection for candidate gene association studies HSPH Bioinformatics Seminar Series

2005 HapMap progress report HSPH Bioinformatics Seminar Series

2006 Design and analysis of whole genome association studies using unrelated subjects HSPH Bioinformatics Mini-Course

2007 Analysis of gene-environment interactions Guest lecturer, EPI222: Genetic Epidemiology of Diabetes and its Complications

2007 Analysis of gene-environment interactions Guest lecturer, ID221: Nutritional Epidemiology II

2007 Design of multi-stage genome-wide association studies HSPH Bioinformatics Mini-Course Guest lecturer, BIO292: Introductory Genomics and Bioinformatics for Health Research

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2008 Double dipping allowed? Genome-wide scans for secondary trait loci in case-control samples Broad Institute Medical and Population Genetics Seminar Series

2009 Nature and Nurture: Gene-environment ‘interactions’ in genome-wide association studies Boston Obesity Nutrition Research Center, Obesity Gene-Environment Interaction Workshop

2009 Inherited Risk and Prognostic Prediction – An Emerging Clinical Imperative? DF/HCC Cancer Symposium

2009 Nature and Nurture: Gene-environment ‘interactions’ in genome-wide association studies A Primer on Complex Trait Genetics: Principles for the Clinical Investigator, Broad Institute

2009 Imputation and Meta-analysis for Genome-Wide and Candidate Gene Association Studies PQG Tutorials on Computational Tools for Analyzing Genomic and Proteomic Data

2009 Finding genetic determinants of complex traits - and what to do with them HSPH Summer Program in Quantitative Sciences

2009 Gene-environment and gene-gene interactions Broad Primer on Medical and Population Genetics

2009 Analysis of gene-environment interactions Guest lecturer, ID221: Nutritional Epidemiology II

2010 Nature and Nurture: Gene-environment ‘interactions’ in genetic association studies A Primer on Complex Trait Genetics: Principles for the Clinical Investigator, Broad Institute

2011 2012 2013 2014

Gene-Environment Interactions in Genome-Wide Association Studies Guest lecturer, ID542: Methods for Mediation and Interaction Gene-Environment Interactions in Genome-Wide Association Studies Guest lecturer, ID542: Methods for Mediation and Interaction Targeted Sequencing of GWAS-identified Breast Cancer Regions and Pilot Whole-genome Sequencing of Early Onset Breast Cancer Cases Broad Institute Medical and Population Genetics Seminar Series A Comprehensivr Survey of Genetic Variation in over 19,000 Subjects from the Nurses’ Health Study, Nurses’ Health Study 2, and Health Professionals Follow-up Study Program in Genetic Epidemiology and Statistical Genetics Seminar Series, Harvard School of Public Health

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2014 Theory and Practice of Genetic Risk Prediction Genomic Medicine and the Bioeconomy, Executive and Continuing Professional Education Short Course, Harvard School of Public Health

c. Advisees and trainees

Duration of Training

Name Current Position or Research Topic

2004 -2010 Yu-Chun (Jean) Yen ScD, Epidemiology

2004 - 2010 Genevieve Monsees

ScD, Epidemiology

Postdoctoral fellow, Fred Hutchinson Cancer Research Center

2004 - 2010 Fangyi Gu

ScD, Epidemiology

Postdoctoral fellow, National Cancer Institute Division of Cancer Epidemiology and Genetics

2004 - 2005 Monica Ter-Minassian

MS, Epidemiology

Postdoctoral fellow, HSPH

2004 - 2006 Deanna Petrochilos

MS, Epidemiology

PhD Candidate, Biomedical and Health Informatics, University of Washington School of Medicine

2005 - 2006 Oemer Goek

MPH, Quantitative Methods

2005 - 2007 Helen Shih

MPH, Quantitative Methods

2007 - 2010 Ying Feng

MS, Epidemiology

2008 - 2010 Wen Lin

MS, Epidemiology

2008 - 2010 Sara Lindström

Postdoctoral Fellow

Research Scientist, Harvard School of Public Health

2009- 2011 Mousheng Xu Postdoctoral Fellow

Hubei Vidagen Gene Technology Co., LTD. (Founder & CEO)

2009 -2013 Linda Hiraki

ScD, Epidemiology

Postdoctoral Fellow, The Hospital for Sick Children, Toronto

2010-2013 Hugues Aschard Postdoctoral Fellow

Research Associate, Harvard School of Public Health

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2010 - Akweley Ablorh

ScD, Epidemiology

2011 - 2014 Amit Joshi Postdoctoral Fellow

Instructor, Brigham and Womens Hospital. Boston

2011 - 2013

2012-

2013-

Chen Wu Postdoctoral Fellow

Deanna Alexis Carrere

ScD, Epidemiology

Chi Gao

MS, Epidemiology

d. Doctoral dissertation committee membership

2003 - 2004 Monica McGrath, Epidemiology

2003 - 2004 Jennifer Pai, Epidemiology

2004 Yadong Yang, Environmental Health

2004 - 2006 Amy Murphy, Biostatistics

2004 - 2005 Stephanie Chiuve, Nutrition

2005 - 2006 Edward Ruiz-Navaerez, Epi and Nutrition

2005 - 2008 Ruy Lopez Ridaura, Nutrition

2006 - 2008 Kathryn Penney, Epidemiology

2006 - 2008 Jennifer Stark-Rider, Epidemiology

2006 - 2008 Christine Jesser, Epidemiology

2007 - 2009 Chunyan He, Epidemiology

2007 - 2008 Jessica Paulus, Epidemiology

2007 - 2008 Julia DiBello, Epidemiology (Brown University)

2007 Shun-Chiao Chang, Epidemiology

2007 - 2008 Julie Kasperzyk, Epidemiology

2009 - 2011 Rain Cui, Biostatistics

2009 - 2010 Stalo Karageorgi, Epidemiology

2009 -2011 Gourab De, Biostatistics

2010 - 2011 Irene Shui, Epidemiology

2010 -2012 Margaret Du, Epidemiology

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2010 - 2013 Cindy Lin, Biostatistics

2011 -2012 Mitchell Machiela, Epidemiology

2011 - 2013 Chia-yen Chen, Epidemiology

2011 - 2012 2013 - 2014 2013 - 2014

Alan Fung, Epidemiology Guido Falcone, Epidemiology Ian Barnett, Biostatistics

2014 - Richard Barfield, Biostatistics

2015 - Emily Slade, Biostatistics

e. Master’s thesis reader

2008-2009 Pallavi Mishra, Epidemiology

2010 - 2011 Yuan-chi Chen, Epidemiology

2. Regional, national, and international invited contributions

a. Regional

2006 Case-control studies of single loci: basic analyses NCI Core Genotyping Facility Mini-Course (Bethesda, MD)

2009 Genome-wide association studies and cancer: what we've learned, and what we haven't learned (yet) UMass-Amherst SPHHS Joint BIO/EPI Seminar Series (Amherst, MA)

2010 Newly Identified Common Alleles Associated with Breast Cancer Incidence: Implications for Risk Prediction and Prevention Translating Emerging Science to Reduce Breast Cancer Disparities The Biological and Social Implications of Targeted Tests and Treatments, Harvard Medical School (Boston, MA)

2010 2012

Genome-wide association studies and personalized medicine Grand Rounds, Leonard Morse Hospital (Natick, MA) Statistical Methods for Assessing Gene-Environment Interactions Gene-Environment and Disparities Research Workshop Series, The Harvard Catalyst Health Disparities Research Program (Boston, MA)

b. National

2005 Haplotypes in studies of gene environment interaction HapMap and the Neurogenetics of Alcoholism Workshop (Washington, DC)

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2005 SNP selection for candidate gene association studies AACR Annual Meeting (Anaheim, CA)

2006 Accounting for etiologic heterogeneity in design and analysis of case-control studies University of Southern California (Los Angeles, CA)

2006 Genome-wide and candidate gene association studies for transplantation Scripps Institute (La Jolla, CA)

2006 Two-Stage Genome-Wide Association Designs Based on False Positive Report Probabilities Pacific Symposium on Biocomputing (Maui, HI)

2006 Allowing for etiologic heterogeneity by disease subtype increases the power of tests for genetic association Joint Statistical Meetings (Seattle WA)

2008 Design, Analysis, and Interpretation of Genome-Wide Association Studies AACR Special Conference on Genome-Wide Association and Pathway Studies (Carefree, AZ)

2008 Short course: Design and Analysis of Genome-Wide Association Studies Eastern North American Meeting (Arlington, VA)

2008 ‘I'm not sure I'm Agnostic’: Incorporating ‘Known’ Biology into Analysis and Interpretation of Genome-wide Association Studies DIMACS Workshop on Computational Issues in Genetic Epidemiology (New Brunswick, NJ)

2009 GWAS and Risk Assessment 100th AACR Annual Meeting (Denver, CO)

2009

Nature and Nurture: Conducting, Analyzing and Interpreting Gene-Environment Interaction Centers for Disease Control University Training Course

2009 Statistical Issues in Building and Evaluating Genetic Risk Predictors Organizer/Chair, Invited Section on Statistics in Epidemiology, Biopharmaceutical Section JSM Annual Meeting (Washington, DC)

2009 The GWAS perspective: indentifying subtypes and improving risk prediction NCI Workshop on Integration of Genomic and Somatic Data (Dec) (Bethesda, MD)

2009 Assessing the incremental value of genetic risk markers beyond clinical risk factors Human Genome Epidemiology Network (HuGENet) Workshop: Strengthening the Reporting of Genetic RIsk Prediction Studies (GRIPS) (Atlanta, GA)

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2010 Statistical Interaction in Observational and Clinical Studies: Challenges and Limitations NIH Genes, Environment and Health Initiative Workshop on Gene-Environment Interplay in Common Complex Diseases: Forging an Integrative Model (Bethesda, MD)

2010 Gene-environment Interactions in Observational and Clinical Studies: Challenges and Limitations NIG Next Generation Analytic Tools for Large Scale Genetic Epidemiology Studies of Complex Diseases Workshop (Bethesda, MD)

2011 Gene-environment Interactions in Observational and Clinical Studies: Challenges and Limitations Brain Tumor Epidemiology Consortium (San Francisco, CA)

2012 Leveraging Gene‑Gene and Gene‑Environment Interactions to understand Cancer Risk The 2012 Robert Welch Memorial Lecture Laboratory of Translational Genomics, NCI Division of Cancer Epidemiology and Genetics (Gaithersberg MD)

2012 State of Science: Gene-Environment Interactions in Breast Cancer NCI Think Tank on Gene-Environment Interactions (Bethesda MD)

2012

Gene-environment interactions in cancer: state of the science and implications for understanding cancer risk AACR Annual Meeting Educational Session: "Beyond GWAS: Gene, Environment and rare variants" (Chicago IL)

2012 Deep targeted sequencing of 12 breast cancer loci in 4,700 women across four different ethnicities. ASHG Annual Meeting (San Francisco CA)

2013 2013 2013 2013 2013

Challenges in the study of gene-gene and gene-environment interactions in complex diseases University of Alabama Seminar Series (Birmingham, AL) Challenges in the study of gene-gene and gene-environment interactions in complex disease Biostatistics Seminar Series, University of Texas School of Public Health (Houston, TX) The Genetic Epidemiology of Breast Cancer: Recent Advances, Future Opportunities, Statistical Challenges Biostatistics and Medical Informatics Seminar Series, University of Wisconsin School of Medicine and Public Health (Madison, WI) Analysis of Rare Variation: Exome and Whole Genome Data Making Sense of the Sequence: Applications in Population Sciences Workshop, National Cancer Institute (Rockville, MD) The Epidemiology of Gene-Environment Interplay in Cancer National Cancer Institute Short Course (Rockville, MD)

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2014 Recent findings from cancer genetic epidemiology: implications for personalized medicine, novel treatment Human Genetics Seminar Series, University of California, Los Angeles (Los Angeles, CA)

2014 Integrating Data Across Domains: Statistical considerations AACR Annual Meeting Educational Session, "Integrative Molecular Epidemiology" (San Diego, CA)

2014

Genome-wide Association Studies "Post GWAS" AACR Annual Meeting (San Diego, CA)

2014 Risk Prediction Using Whole-Genome Data: Methods and Prospects Joint Statistical Meetings (Boston, MA)

2014 Ongoing Genome-wide Cancer Risk Marker Discovery Efforts and Their Implications for Risk Modeling CISNET Annual Meeting (Shady Grove, MA)

2015 Genome-wide association studies in the “post-GWAS” era: further discovery, biological insight, and translation Dartmouth College (Hanover, NH)

c. International

2004 Haplotypes in studies of gene environment interaction International Conference on Analysis of Genomic Data (Boston, MA)

2004 Sources of measurement error in haplotype tagging studies of complex disease Joint Statistical Meetings (Toronto, Canada)

2004 Efficient two-stage genome-wide association designs based on False Positive Report Probabilities International Genetic Epidemiology Society Meeting (Noordwijkerhout, the Netherlands)

2005 Integrating epidemiology and genetic association The Royal Society (London, United Kingdom)

2005 Design and analysis of candidate gene association studies using 'tagging SNPs' Samuel Lunenfeld Research Institute (Toronto, Canada)

2005 Genome-wide association scans for prostate and breast cancer: design and analysis International Genetic Epidemiology Society Meeting (Park City, UT)

2007 From candidate genes to pathways to the whole genome: large-scale genetic association studies of prostate cancer: prospects and preliminary results AACR/JCA In the Forefront of Basic and Translational Cancer Research Conference (Waikoloa, HI)

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2007 Leveraging the Environment to Find Complex Disease Genes International Genetic Epidemiology Society Meeting (York, England)

2007 What a difference a year makes: Lessons learned from early genome-wide association scans and their implications for cancer treatment and prevention Panhellenic Anticancer Congress (Athens, Greece)

2008 Genome-Wide Association Scans (GWAS): Past, Present and Future International Biometric Society Meeting (Munich, Germany)

2008 Crystal Ball, Magic 8 Ball, or Both? Statistical Issues in Building and Evaluating Genetic Risk Prediction Models International Genetic Epidemiology Society (St. Louis, MO)

2009 Nature and Nurture: Gene-environment ‘interactions’ in genome-wide association studies 3rd Paris Workshop on Genomic Epidemiology (Paris, France)

2010 Measure Twice, Cut Once: Is individualized prevention important and practical? Joint Congress of the German Society for Social Medicine and Prevention, the German Society for Epidemiology and the European Union of Medicine in Assurance and Social Security (Berlin, Germany)

2011 Finding hidden heritability for complex diseases using linear mixed models: Lessons learned in the school of hard knocks Canadian Genetic Epidemiology Meeting (Toronto, Canada)

2011 Methods for Genome-Wide Gene-Environment Interaction Scans Karolinska Institue Meeting on GxE interactions (Stockholm, Sweden)

2012 Combining –omics: challenges and possible solutions Capita Selecta in Complex Disease Analysis (Liege, Belgium)

Bibliography (336 total peer-reviewed articles)

Original Articles

1. Heerema, N.A., H.N. Sather, M.G. Sensel, P. Kraft, J.B. Nachman, P.G. Steinherz, B.J. Lange, R.S. Hutchinson, G.H. Reaman, M.E. Trigg, D.C. Arthur, P.S. Gaynon, and F.M. Uckun, Frequency and clinical significance of cytogenetic abnormalities in pediatric T-lineage acute lymphoblastic leukemia: a report from the Children's Cancer Group. J Clin Oncol, 1998. 16(4): p. 1270-8.

2. Waurzyniak, B.J., N. Heerema, M.G. Sensel, P.S. Gaynon, P. Kraft, H.N. Sather, L. Chelstrom, G.H. Reaman, and F.M. Uckun, Distinct in vivo engraftment and growth patterns of t(1;19)+/E2A-PBX1+ and t(9;22)+/BCR-ABL+ human leukemia cells in SCID mice. Leuk Lymphoma, 1998. 32(1-2): p. 77-87.

3. Uckun, F.M., M.G. Sensel, H.N. Sather, P.S. Gaynon, D.C. Arthur, B.J. Lange, P.G. Steinherz, P. Kraft, R. Hutchinson, J.B. Nachman, G.H. Reaman, and N.A. Heerema, Clinical significance of translocation t(1;19) in childhood acute lymphoblastic leukemia in the context of contemporary therapies: a report from the Children's Cancer Group. J Clin Oncol, 1998. 16(2): p. 527-35.

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4. Uckun, F.M., J.B. Nachman, H.N. Sather, M.G. Sensel, P. Kraft, P.G. Steinherz, B. Lange, R. Hutchinson, G.H. Reaman, P.S. Gaynon, and N.A. Heerema, Clinical significance of Philadelphia chromosome positive pediatric acute lymphoblastic leukemia in the context of contemporary intensive therapies: a report from the Children's Cancer Group. Cancer, 1998. 83(9): p. 2030-9.

5. Uckun, F.M., J.B. Nachman, H.N. Sather, M.G. Sensel, P. Kraft, P.G. Steinherz, B. Lange, R. Hutchinson, G.H. Reaman, P.S. Gaynon, and N.A. Heerema, Poor treatment outcome of Philadelphia chromosome-positive pediatric acute lymphoblastic leukemia despite intensive chemotherapy. Leuk Lymphoma, 1999. 33(1-2): p. 101-6.

6. Siegmund, K.D., B. Langholz, P. Kraft, and D.C. Thomas, Testing linkage disequilibrium in sibships. Am J Hum Genet, 2000. 67(1): p. 244-8.

7. Kraft, P. and D.C. Thomas, Bias and efficiency in family-based gene-characterization studies: conditional, prospective, retrospective, and joint likelihoods. Am J Hum Genet, 2000. 66(3): p. 1119-31.

8. Sherwin, R.P., V. Richters, P. Kraft, and A. Richters, Centriacinar region inflammatory disease in young individuals: a comparative study of Miami and Los Angeles residents. Virchows Arch, 2000. 437(4): p. 422-8.

9. Kraft, P., A robust score test for linkage disequilibrium in general pedigrees. Genet Epidemiol, 2001. 21 Suppl 1: p. S447-52.

10. Kraft, P. and M. Wilson, Family-based association tests incorporating parental genotypes. Am J Hum Genet, 2002. 71(5): p. 1238-9; author reply 1240-2.

11. Kang, T., P. Kraft, W.J. Gauderman, and D. Thomas, Multiple imputation methods for longitudinal blood pressure measurements from the Framingham Heart Study. BMC Genet, 2003. 4 Suppl 1: p. S43.

12. Kraft, P., L. Bauman, J.Y. Yuan, and S. Horvath, Multivariate variance-components analysis of longitudinal blood pressure measurements from the Framingham Heart Study. BMC Genet, 2003. 4 Suppl 1: p. S55.

13. Allen, E., S. Horvath, F. Tong, P. Kraft, E. Spiteri, A.D. Riggs, and Y. Marahrens, High concentrations of long interspersed nuclear element sequence distinguish monoallelically expressed genes. Proc Natl Acad Sci U S A, 2003. 100(17): p. 9940-5.

14. Kraft, P., E. Schadt, J. Aten, and S. Horvath, A family-based test for correlation between gene expression and trait values. Am J Hum Genet, 2003. 72(5): p. 1323-30.

15. Tamimi, R.M., S.E. Hankinson, D. Spiegelman, P. Kraft, G.A. Colditz, and D.J. Hunter, Common ataxia telangiectasia mutated haplotypes and risk of breast cancer: a nested case-control study. Breast Cancer Res, 2004. 6(4): p. R416-22.

16. Kraft, P. and D.C. Thomas, Case-sibling gene-association studies for diseases with variable age at onset. Stat Med, 2004. 23(23): p. 3697-712.

17. Kraft, P., C.G. Palmer, A.J. Woodward, J.A. Turunen, S. Minassian, T. Paunio, J. Lonnqvist, L. Peltonen, and J.S. Sinsheimer, RHD maternal-fetal genotype incompatibility and schizophrenia: extending the MFG test to include multiple siblings and birth order. Eur J Hum Genet, 2004. 12(3): p. 192-8.

18. Kraft, P., Multiple comparisons in studies of gene x gene and gene x environment interaction. Am J Hum Genet, 2004. 74(3): p. 582-4; author reply 584-5.

19. Cox, D.G., S.E. Hankinson, P. Kraft, and D.J. Hunter, No association between GPX1 Pro198Leu and breast cancer risk. Cancer Epidemiol Biomarkers Prev, 2004. 13(11 Pt 1): p. 1821-2.

20. Cox, D.G., P. Kraft, S.E. Hankinson, and D.J. Hunter, Haplotype analysis of common variants in the BRCA1 gene and risk of sporadic breast cancer. Breast Cancer Res, 2005. 7(2): p. R171-5.

21. Murphy, A., M.B. McQueen, J. Su, P. Kraft, R. Lazarus, N.M. Laird, C. Lange, and K. Van Steen, Genomic screening in family-based association testing. BMC Genet, 2005. 6 Suppl 1: p. S115.

22. McQueen, M.B., A. Murphy, P. Kraft, J. Su, R. Lazarus, N.M. Laird, C. Lange, and K. Van Steen, Comparison of linkage and association strategies for quantitative traits using the COGA dataset. BMC Genet, 2005. 6 Suppl 1: p. S96.

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23. Kraft, P., D.G. Cox, R.A. Paynter, D. Hunter, and I. De Vivo, Accounting for haplotype uncertainty in matched association studies: a comparison of simple and flexible techniques. Genet Epidemiol, 2005. 28(3): p. 261-72.

24. Paynter, R.A., S.E. Hankinson, G.A. Colditz, P. Kraft, D.J. Hunter, and I. De Vivo, CYP19 (aromatase) haplotypes and endometrial cancer risk. Int J Cancer, 2005. 116(2): p. 267-74.

25. Hunter, D.J., E. Riboli, C.A. Haiman, D. Albanes, D. Altshuler, S.J. Chanock, R.B. Haynes, B.E. Henderson, R. Kaaks, D.O. Stram, G. Thomas, M.J. Thun, H. Blanche, J.E. Buring, N.P. Burtt, E.E. Calle, H. Cann, F. Canzian, Y.C. Chen, G.A. Colditz, D.G. Cox, A.M. Dunning, H.S. Feigelson, M.L. Freedman, J.M. Gaziano, E. Giovannucci, S.E. Hankinson, J.N. Hirschhorn, R.N. Hoover, T. Key, L.N. Kolonel, P. Kraft, L. Le Marchand, S. Liu, J. Ma, S. Melnick, P. Pharaoh, M.C. Pike, C. Rodriguez, V.W. Setiawan, M.J. Stampfer, E. Trapido, R. Travis, J. Virtamo, S. Wacholder, and W.C. Willett, A candidate gene approach to searching for low-penetrance breast and prostate cancer genes. Nat Rev Cancer, 2005. 5(12): p. 977-85.

26. Chen, Y.C., E. Giovannucci, R. Lazarus, P. Kraft, S. Ketkar, and D.J. Hunter, Sequence variants of Toll-like receptor 4 and susceptibility to prostate cancer. Cancer Res, 2005. 65(24): p. 11771-8.

27. Kraft, P., H.J. Hsieh, H.J. Cordell, and J. Sinsheimer, A conditional-on-exchangeable-parental-genotypes likelihood that remains unbiased at the causal locus under multiple-affected-sibling ascertainment. Genet Epidemiol, 2005. 29(1): p. 87-90.

28. Litonjua, A.A., K. Belanger, J.C. Celedon, D.K. Milton, M.B. Bracken, P. Kraft, E.W. Triche, D.L. Sredl, S.T. Weiss, B.P. Leaderer, and D.R. Gold, Polymorphisms in the 5' region of the CD14 gene are associated with eczema in young children. J Allergy Clin Immunol, 2005. 115(5): p. 1056-62.

29. Kraft, P., P. Pharoah, S.J. Chanock, D. Albanes, L.N. Kolonel, R.B. Hayes, D. Altshuler, G. Andriole, C. Berg, H. Boeing, N.P. Burtt, B. Bueno-de-Mesquita, E.E. Calle, H. Cann, F. Canzian, Y.C. Chen, D.E. Crawford, A.M. Dunning, H.S. Feigelson, M.L. Freedman, J.M. Gaziano, E. Giovannucci, C.A. Gonzalez, C.A. Haiman, G. Hallmans, B.E. Henderson, J.N. Hirschhorn, D.J. Hunter, R. Kaaks, T. Key, L. Le Marchand, J. Ma, K. Overvad, D. Palli, M.C. Pike, E. Riboli, C. Rodriguez, W.V. Setiawan, M.J. Stampfer, D.O. Stram, G. Thomas, M.J. Thun, R. Travis, A. Trichopoulou, J. Virtamo, and S. Wacholder, Genetic variation in the HSD17B1 gene and risk of prostate cancer. PLoS Genet, 2005. 1(5): p. e68.

30. Cox, D.G. and P. Kraft, Quantification of the power of Hardy-Weinberg equilibrium testing to detect genotyping error. Hum Hered, 2006. 61(1): p. 10-4.

31. Cox, D.G., H. Blanche, C.L. Pearce, E.E. Calle, G.A. Colditz, M.C. Pike, D. Albanes, N.E. Allen, P. Amiano, G. Berglund, H. Boeing, J. Buring, N. Burtt, F. Canzian, S. Chanock, F. Clavel-Chapelon, H.S. Feigelson, M. Freedman, C.A. Haiman, S.E. Hankinson, B.E. Henderson, R. Hoover, D.J. Hunter, R. Kaaks, L. Kolonel, P. Kraft, L. LeMarchand, E. Lund, D. Palli, P.H. Peeters, E. Riboli, D.O. Stram, M. Thun, A. Tjonneland, D. Trichopoulos, and M. Yeager, A comprehensive analysis of the androgen receptor gene and risk of breast cancer: results from the National Cancer Institute Breast and Prostate Cancer Cohort Consortium (BPC3). Breast Cancer Res, 2006. 8(5): p. R54.

32. Kraft, P., Efficient two-stage genome-wide association designs based on false positive report probabilities. Pac Symp Biocomput, 2006: p. 523-34.

33. Miller, K.L., M.R. Karagas, P. Kraft, D.J. Hunter, P.J. Catalano, S.H. Byler, and H.H. Nelson, XPA, haplotypes, and risk of basal and squamous cell carcinoma. Carcinogenesis, 2006. 27(8): p. 1670-5.

34. Koushik, A., P. Kraft, C.S. Fuchs, S.E. Hankinson, W.C. Willett, E.L. Giovannucci, and D.J. Hunter, Nonsynonymous polymorphisms in genes in the one-carbon metabolism pathway and associations with colorectal cancer. Cancer Epidemiol Biomarkers Prev, 2006. 15(12): p. 2408-17.

35. Feigelson, H.S., D.G. Cox, H.M. Cann, S. Wacholder, R. Kaaks, B.E. Henderson, D. Albanes, D. Altshuler, G. Berglund, F. Berrino, S. Bingham, J.E. Buring, N.P. Burtt, E.E. Calle, S.J. Chanock, F. Clavel-Chapelon, G. Colditz, W.R. Diver, M.L. Freedman, C.A. Haiman, S.E. Hankinson, R.B. Hayes, J.N. Hirschhorn, D. Hunter, L.N. Kolonel, P. Kraft, L. LeMarchand, J. Linseisen, W. Modi, C. Navarro, P.H. Peeters, M.C. Pike, E. Riboli, V.W. Setiawan, D.O. Stram, G. Thomas, M.J. Thun, A. Tjonneland,

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and D. Trichopoulos, Haplotype analysis of the HSD17B1 gene and risk of breast cancer: a comprehensive approach to multicenter analyses of prospective cohort studies. Cancer Res, 2006. 66(4): p. 2468-75.

36. Sokol, R.Z., P. Kraft, I.M. Fowler, R. Mamet, E. Kim, and K.T. Berhane, Exposure to environmental ozone alters semen quality. Environ Health Perspect, 2006. 114(3): p. 360-5.

37. McGrath, M., I.M. Lee, S.E. Hankinson, P. Kraft, D.J. Hunter, J. Buring, and I. De Vivo, Androgen receptor polymorphisms and endometrial cancer risk. Int J Cancer, 2006. 118(5): p. 1261-8.

38. Pai, J.K., P. Kraft, C.C. Cannuscio, J.E. Manson, K.M. Rexrode, C.M. Albert, D. Hunter, and E.B. Rimm, Polymorphisms in the CC-chemokine receptor-2 (CCR2) and -5 (CCR5) genes and risk of coronary heart disease among US women. Atherosclerosis, 2006. 186(1): p. 132-9.

39. Govindarajulu, U.S., D. Spiegelman, K.L. Miller, and P. Kraft, Quantifying bias due to allele misclassification in case-control studies of haplotypes. Genet Epidemiol, 2006. 30(7): p. 590-601.

40. Han, J., P. Kraft, G.A. Colditz, J. Wong, and D.J. Hunter, Melanocortin 1 receptor variants and skin cancer risk. Int J Cancer, 2006. 119(8): p. 1976-84.

41. Kraft, P., Y.C. Yen, D.O. Stram, J. Morrison, and W.J. Gauderman, Exploiting gene-environment interaction to detect genetic associations. Hum Hered, 2007. 63(2): p. 111-9.

42. Tamimi, R.M., D.G. Cox, P. Kraft, M.N. Pollak, C.A. Haiman, I. Cheng, M.L. Freedman, S.E. Hankinson, D.J. Hunter, and G.A. Colditz, Common genetic variation in IGF1, IGFBP-1, and IGFBP-3 in relation to mammographic density: a cross-sectional study. Breast Cancer Res, 2007. 9(1): p. R18.

43. Schumacher, F.R. and P. Kraft, A Bayesian latent class analysis for whole-genome association analyses: an illustration using the GAW15 simulated rheumatoid arthritis dense scan data. BMC Proc, 2007. 1 Suppl 1: p. S112.

44. Gu, F., G. Monsees, and P. Kraft, Exhaustive screens for disease susceptibility loci incorporating statistical interaction of genotypes: a comparison of likelihood-ratio-based and Akaike and Bayesian information criteria-based methods. BMC Proc, 2007. 1 Suppl 1: p. S25.

45. Schumacher, F.R., H.S. Feigelson, D.G. Cox, C.A. Haiman, D. Albanes, J. Buring, E.E. Calle, S.J. Chanock, G.A. Colditz, W.R. Diver, A.M. Dunning, M.L. Freedman, J.M. Gaziano, E. Giovannucci, S.E. Hankinson, R.B. Hayes, B.E. Henderson, R.N. Hoover, R. Kaaks, T. Key, L.N. Kolonel, P. Kraft, L. Le Marchand, J. Ma, M.C. Pike, E. Riboli, M.J. Stampfer, D.O. Stram, G. Thomas, M.J. Thun, R. Travis, J. Virtamo, G. Andriole, E. Gelmann, W.C. Willett, and D.J. Hunter, A common 8q24 variant in prostate and breast cancer from a large nested case-control study. Cancer Res, 2007. 67(7): p. 2951-6.

46. Zhai, R., M.N. Gong, W. Zhou, T.B. Thompson, P. Kraft, L. Su, and D.C. Christiani, Genotypes and haplotypes of the VEGF gene are associated with higher mortality and lower VEGF plasma levels in patients with ARDS. Thorax, 2007. 62(8): p. 718-22.

47. Yang, Y., E. Ruiz-Narvaez, P. Kraft, and H. Campos, Effect of apolipoprotein E genotype and saturated fat intake on plasma lipids and myocardial infarction in the Central Valley of Costa Rica. Hum Biol, 2007. 79(6): p. 637-47.

48. Baylin, A., E. Ruiz-Narvaez, P. Kraft, and H. Campos, alpha-Linolenic acid, Delta6-desaturase gene polymorphism, and the risk of nonfatal myocardial infarction. Am J Clin Nutr, 2007. 85(2): p. 554-60.

49. Hazra, A., K. Wu, P. Kraft, C.S. Fuchs, E.L. Giovannucci, and D.J. Hunter, Twenty-four non-synonymous polymorphisms in the one-carbon metabolic pathway and risk of colorectal adenoma in the Nurses' Health Study. Carcinogenesis, 2007. 28(7): p. 1510-9.

50. Hunter, D.J., P. Kraft, K.B. Jacobs, D.G. Cox, M. Yeager, S.E. Hankinson, S. Wacholder, Z. Wang, R. Welch, A. Hutchinson, J. Wang, K. Yu, N. Chatterjee, N. Orr, W.C. Willett, G.A. Colditz, R.G. Ziegler, C.D. Berg, S.S. Buys, C.A. McCarty, H.S. Feigelson, E.E. Calle, M.J. Thun, R.B. Hayes, M. Tucker, D.S. Gerhard, J.F. Fraumeni, Jr., R.N. Hoover, G. Thomas, and S.J. Chanock, A genome-wide association study identifies alleles in FGFR2 associated with risk of sporadic postmenopausal breast cancer. Nat Genet, 2007. 39(7): p. 870-4.

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51. Ogino, S., T. Kawasaki, G.J. Kirkner, P. Kraft, M. Loda, and C.S. Fuchs, Evaluation of markers for CpG island methylator phenotype (CIMP) in colorectal cancer by a large population-based sample. J Mol Diagn, 2007. 9(3): p. 305-14.

52. Zhai, R., W. Zhou, M.N. Gong, B.T. Thompson, L. Su, C. Yu, P. Kraft, and D.C. Christiani, Inhibitor kappaB-alpha haplotype GTC is associated with susceptibility to acute respiratory distress syndrome in Caucasians. Crit Care Med, 2007. 35(3): p. 893-8.

53. Yeager, M., N. Orr, R.B. Hayes, K.B. Jacobs, P. Kraft, S. Wacholder, M.J. Minichiello, P. Fearnhead, K. Yu, N. Chatterjee, Z. Wang, R. Welch, B.J. Staats, E.E. Calle, H.S. Feigelson, M.J. Thun, C. Rodriguez, D. Albanes, J. Virtamo, S. Weinstein, F.R. Schumacher, E. Giovannucci, W.C. Willett, G. Cancel-Tassin, O. Cussenot, A. Valeri, G.L. Andriole, E.P. Gelmann, M. Tucker, D.S. Gerhard, J.F. Fraumeni, Jr., R. Hoover, D.J. Hunter, S.J. Chanock, and G. Thomas, Genome-wide association study of prostate cancer identifies a second risk locus at 8q24. Nat Genet, 2007. 39(5): p. 645-9.

54. Setiawan, V.W., F.R. Schumacher, C.A. Haiman, D.O. Stram, D. Albanes, D. Altshuler, G. Berglund, J. Buring, E.E. Calle, F. Clavel-Chapelon, D.G. Cox, J.M. Gaziano, S.E. Hankinson, R.B. Hayes, B.E. Henderson, J. Hirsch, R. Hoover, D.J. Hunter, R. Kaaks, L.N. Kolonel, P. Kraft, J. Ma, L. Le Marchand, J. Linseisen, E. Lund, C. Navarro, K. Overvad, D. Palli, P.H. Peeters, M.C. Pike, E. Riboli, M.J. Stampfer, M.J. Thun, R. Travis, D. Trichopoulos, M. Yeager, R.G. Ziegler, H. Spencer Feigelson, and S.J. Chanock, CYP17 genetic variation and risk of breast and prostate cancer from the National Cancer Institute Breast and Prostate Cancer Cohort Consortium (BPC3). Cancer Epidemiol Biomarkers Prev, 2007. 16(11): p. 2237-46.

55. Kraft, P., Analyses of genome-wide association scans for additional outcomes. Epidemiology, 2007. 18(6): p. 838.

56. Kraft, P. and D.O. Stram, Re: the use of inferred haplotypes in downstream analysis. Am J Hum Genet, 2007. 81(4): p. 863-5; author reply 865-6.

57. Ruiz-Narvaez, E.A., P. Kraft, and H. Campos, Ala12 variant of the peroxisome proliferator-activated receptor-gamma gene (PPARG) is associated with higher polyunsaturated fat in adipose tissue and attenuates the protective effect of polyunsaturated fat intake on the risk of myocardial infarction. Am J Clin Nutr, 2007. 86(4): p. 1238-42.

58. Chen, Y.C., P. Kraft, P. Bretsky, S. Ketkar, D.J. Hunter, D. Albanes, D. Altshuler, G. Andriole, C.D. Berg, H. Boeing, N. Burtt, B. Bueno-de-Mesquita, H. Cann, F. Canzian, S. Chanock, A. Dunning, H.S. Feigelson, M. Freedman, J.M. Gaziano, E. Giovannucci, M.J. Sanchez, C.A. Haiman, G. Hallmans, R.B. Hayes, B.E. Henderson, J. Hirschhorn, R. Kaaks, T.J. Key, L.N. Kolonel, L. LeMarchand, J. Ma, K. Overvad, D. Palli, P. Pharaoh, M. Pike, E. Riboli, C. Rodriguez, V.W. Setiawan, M. Stampfer, D.O. Stram, G. Thomas, M.J. Thun, R.C. Travis, J. Virtamo, A. Trichopoulou, S. Wacholder, and S.J. Weinstein, Sequence variants of estrogen receptor beta and risk of prostate cancer in the National Cancer Institute Breast and Prostate Cancer Cohort Consortium. Cancer Epidemiol Biomarkers Prev, 2007. 16(10): p. 1973-81.

59. Chen, Y.C., E. Giovannucci, P. Kraft, R. Lazarus, and D.J. Hunter, Association between Toll-like receptor gene cluster (TLR6, TLR1, and TLR10) and prostate cancer. Cancer Epidemiol Biomarkers Prev, 2007. 16(10): p. 1982-9.

60. Patel, A.V., I. Cheng, F. Canzian, L. Le Marchand, M.J. Thun, C.D. Berg, J. Buring, E.E. Calle, S. Chanock, F. Clavel-Chapelon, D.G. Cox, M. Dorronsoro, L. Dossus, C.A. Haiman, S.E. Hankinson, B.E. Henderson, R. Hoover, D.J. Hunter, R. Kaaks, L.N. Kolonel, P. Kraft, J. Linseisen, E. Lund, J. Manjer, C. McCarty, P.H. Peeters, M.C. Pike, M. Pollak, E. Riboli, D.O. Stram, A. Tjonneland, R.C. Travis, D. Trichopoulos, R. Tumino, M. Yeager, R.G. Ziegler, and H.S. Feigelson, IGF-1, IGFBP-1, and IGFBP-3 polymorphisms predict circulating IGF levels but not breast cancer risk: findings from the Breast and Prostate Cancer Cohort Consortium (BPC3). PLoS One, 2008. 3(7): p. e2578.

61. Tamimi, R.M., D. Cox, P. Kraft, G.A. Colditz, S.E. Hankinson, and D.J. Hunter, Breast cancer susceptibility loci and mammographic density. Breast Cancer Res, 2008. 10(4): p. R66.

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62. Chen, Y.C., E. Giovannucci, P. Kraft, and D.J. Hunter, Association between genetic polymorphisms of macrophage scavenger receptor 1 gene and risk of prostate cancer in the health professionals follow-up study. Cancer Epidemiol Biomarkers Prev, 2008. 17(4): p. 1001-3.

63. Garcia-Closas, M., P. Hall, H. Nevanlinna, K. Pooley, J. Morrison, D.A. Richesson, S.E. Bojesen, B.G. Nordestgaard, C.K. Axelsson, J.I. Arias, R.L. Milne, G. Ribas, A. Gonzalez-Neira, J. Benitez, P. Zamora, H. Brauch, C. Justenhoven, U. Hamann, Y.D. Ko, T. Bruening, S. Haas, T. Dork, P. Schurmann, P. Hillemanns, N. Bogdanova, M. Bremer, J.H. Karstens, R. Fagerholm, K. Aaltonen, K. Aittomaki, K. von Smitten, C. Blomqvist, A. Mannermaa, M. Uusitupa, M. Eskelinen, M. Tengstrom, V.M. Kosma, V. Kataja, G. Chenevix-Trench, A.B. Spurdle, J. Beesley, X. Chen, P. Devilee, C.J. van Asperen, C.E. Jacobi, R.A. Tollenaar, P.E. Huijts, J.G. Klijn, J. Chang-Claude, S. Kropp, T. Slanger, D. Flesch-Janys, E. Mutschelknauss, R. Salazar, S. Wang-Gohrke, F. Couch, E.L. Goode, J.E. Olson, C. Vachon, Z.S. Fredericksen, G.G. Giles, L. Baglietto, G. Severi, J.L. Hopper, D.R. English, M.C. Southey, C.A. Haiman, B.E. Henderson, L.N. Kolonel, L. Le Marchand, D.O. Stram, D.J. Hunter, S.E. Hankinson, D.G. Cox, R. Tamimi, P. Kraft, M.E. Sherman, S.J. Chanock, J. Lissowska, L.A. Brinton, B. Peplonska, M.J. Hooning, H. Meijers-Heijboer, J.M. Collee, A. van den Ouweland, A.G. Uitterlinden, J. Liu, L.Y. Lin, L. Yuqing, K. Humphreys, K. Czene, A. Cox, S.P. Balasubramanian, S.S. Cross, M.W. Reed, F. Blows, K. Driver, A. Dunning, J. Tyrer, B.A. Ponder, S. Sangrajrang, P. Brennan, J. McKay, F. Odefrey, V. Gabrieau, A. Sigurdson, M. Doody, J.P. Struewing, B. Alexander, D.F. Easton and P.D. Pharoah, Heterogeneity of breast cancer associations with five susceptibility loci by clinical and pathological characteristics. PLoS Genet, 2008. 4(4): p. e1000054.

64. DiBello, J.R., P. Kraft, S.T. McGarvey, R. Goldberg, H. Campos, and A. Baylin, Comparison of 3 methods for identifying dietary patterns associated with risk of disease. Am J Epidemiol, 2008. 168(12): p. 1433-43.

65. Cox, D.G., P. Bretsky, P. Kraft, P. Pharoah, D. Albanes, D. Altshuler, P. Amiano, G. Berglund, H. Boeing, J. Buring, N. Burtt, E.E. Calle, F. Canzian, S. Chanock, F. Clavel-Chapelon, G.A. Colditz, H.S. Feigelson, C.A. Haiman, S.E. Hankinson, J. Hirschhorn, B.E. Henderson, R. Hoover, D.J. Hunter, R. Kaaks, L. Kolonel, L. LeMarchand, E. Lund, D. Palli, P.H. Peeters, M.C. Pike, E. Riboli, D.O. Stram, M. Thun, A. Tjonneland, R.C. Travis, D. Trichopoulos, and M. Yeager, Haplotypes of the estrogen receptor beta gene and breast cancer risk. Int J Cancer, 2008. 122(2): p. 387-92.

66. Loos, R.J., C.M. Lindgren, S. Li, E. Wheeler, J.H. Zhao, I. Prokopenko, M. Inouye, R.M. Freathy, A.P. Attwood, J.S. Beckmann, S.I. Berndt, K.B. Jacobs, S.J. Chanock, R.B. Hayes, S. Bergmann, A.J. Bennett, S.A. Bingham, M. Bochud, M. Brown, S. Cauchi, J.M. Connell, C. Cooper, G.D. Smith, I. Day, C. Dina, S. De, E.T. Dermitzakis, A.S. Doney, K.S. Elliott, P. Elliott, D.M. Evans, I. Sadaf Farooqi, P. Froguel, J. Ghori, C.J. Groves, R. Gwilliam, D. Hadley, A.S. Hall, A.T. Hattersley, J. Hebebrand, I.M. Heid, C. Lamina, C. Gieger, T. Illig, T. Meitinger, H.E. Wichmann, B. Herrera, A. Hinney, S.E. Hunt, M.R. Jarvelin, T. Johnson, J.D. Jolley, F. Karpe, A. Keniry, K.T. Khaw, R.N. Luben, M. Mangino, J. Marchini, W.L. McArdle, R. McGinnis, D. Meyre, P.B. Munroe, A.D. Morris, A.R. Ness, M.J. Neville, A.C. Nica, K.K. Ong, S. O'Rahilly, K.R. Owen, C.N. Palmer, K. Papadakis, S. Potter, A. Pouta, L. Qi, J.C. Randall, N.W. Rayner, S.M. Ring, M.S. Sandhu, A. Scherag, M.A. Sims, K. Song, N. Soranzo, E.K. Speliotes, H.E. Syddall, S.A. Teichmann, N.J. Timpson, J.H. Tobias, M. Uda, C.I. Vogel, C. Wallace, D.M. Waterworth, M.N. Weedon, C.J. Willer, Wraight, X. Yuan, E. Zeggini, J.N. Hirschhorn, D.P. Strachan, W.H. Ouwehand, M.J. Caulfield, N.J. Samani, T.M. Frayling, P. Vollenweider, G. Waeber, V. Mooser, P. Deloukas, M.I. McCarthy, N.J. Wareham, I. Barroso, P. Kraft, S.E. Hankinson, D.J. Hunter, F.B. Hu, H.N. Lyon, B.F. Voight, M. Ridderstrale, L. Groop, P. Scheet, S. Sanna, G.R. Abecasis, G. Albai, R. Nagaraja, D. Schlessinger, A.U. Jackson, J. Tuomilehto, F.S. Collins, M. Boehnke and K.L. Mohlke, Common variants near MC4R are associated with fat mass, weight and risk of obesity. Nat Genet, 2008. 40(6): p. 768-75.

67. Thomas, G., K.B. Jacobs, M. Yeager, P. Kraft, S. Wacholder, N. Orr, K. Yu, N. Chatterjee, R. Welch, A. Hutchinson, A. Crenshaw, G. Cancel-Tassin, B.J. Staats, Z. Wang, J. Gonzalez-Bosquet, J. Fang, X. Deng, S.I. Berndt, E.E. Calle, H.S. Feigelson, M.J. Thun, C. Rodriguez, D. Albanes, J. Virtamo, S.

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Weinstein, F.R. Schumacher, E. Giovannucci, W.C. Willett, O. Cussenot, A. Valeri, G.L. Andriole, E.D. Crawford, M. Tucker, D.S. Gerhard, J.F. Fraumeni, Jr., R. Hoover, R.B. Hayes, D.J. Hunter, and S.J. Chanock, Multiple loci identified in a genome-wide association study of prostate cancer. Nat Genet, 2008. 40(3): p. 310-5.

68. Chen, Y.C., E. Giovannucci, P. Kraft, and J.H. D, Sequence variants of elaC homolog 2 (Escherichia coli) (ELAC2) gene and susceptibility to prostate cancer in the Health Professionals Follow-Up Study. Carcinogenesis, 2008. 29(5): p. 999-1004.

69. Lettre, G., A.U. Jackson, C. Gieger, F.R. Schumacher, S.I. Berndt, S. Sanna, S. Eyheramendy, B.F. Voight, J.L. Butler, C. Guiducci, T. Illig, R. Hackett, I.M. Heid, K.B. Jacobs, V. Lyssenko, M. Uda, M. Boehnke, S.J. Chanock, L.C. Groop, F.B. Hu, B. Isomaa, P. Kraft, L. Peltonen, V. Salomaa, D. Schlessinger, D.J. Hunter, R.B. Hayes, G.R. Abecasis, H.E. Wichmann, K.L. Mohlke, and J.N. Hirschhorn, Identification of ten loci associated with height highlights new biological pathways in human growth. Nat Genet, 2008. 40(5): p. 584-91.

70. Han, J., P. Kraft, H. Nan, Q. Guo, C. Chen, A. Qureshi, S.E. Hankinson, F.B. Hu, D.L. Duffy, Z.Z. Zhao, N.G. Martin, G.W. Montgomery, N.K. Hayward, G. Thomas, R.N. Hoover, S. Chanock, and D.J. Hunter, A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation. PLoS Genet, 2008. 4(5): p. e1000074.

71. Qi, L., K. Kang, C. Zhang, R.M. van Dam, P. Kraft, D. Hunter, C.H. Lee, and F.B. Hu, Fat mass-and obesity-associated (FTO) gene variant is associated with obesity: longitudinal analyses in two cohort studies and functional test. Diabetes, 2008. 57(11): p. 3145-51.

72. Qi, L., P. Kraft, D.J. Hunter, and F.B. Hu, The common obesity variant near MC4R gene is associated with higher intakes of total energy and dietary fat, weight change and diabetes risk in women. Hum Mol Genet, 2008. 17(22): p. 3502-8.

73. Hazra, A., P. Kraft, J. Selhub, E.L. Giovannucci, G. Thomas, R.N. Hoover, S.J. Chanock, and D.J. Hunter, Common variants of FUT2 are associated with plasma vitamin B12 levels. Nat Genet, 2008. 40(10): p. 1160-2.

74. Gu, F., A.A. Qureshi, T. Niu, P. Kraft, Q. Guo, D.J. Hunter, and J. Han, Interleukin and interleukin receptor gene polymorphisms and susceptibility to melanoma. Melanoma Res, 2008. 18(5): p. 330-5.

75. Ahn, J., S.I. Berndt, S. Wacholder, P. Kraft, A.S. Kibel, M. Yeager, D. Albanes, E. Giovannucci, M.J. Stampfer, J. Virtamo, M.J. Thun, H.S. Feigelson, G. Cancel-Tassin, O. Cussenot, G. Thomas, D.J. Hunter, J.F. Fraumeni, Jr., R.N. Hoover, S.J. Chanock, and R.B. Hayes, Variation in KLK genes, prostate-specific antigen and risk of prostate cancer. Nat Genet, 2008. 40(9): p. 1032-4; author reply 1035-6.

76. Caporaso, N.*, F. Gu*, N. Chatterjee, J. Sheng-Chih, K. Yu, M. Yeager, C. Chen, K. Jacobs, W. Wheeler, M.T. Landi, R.G. Ziegler, D.J. Hunter, S. Chanock, S. Hankinson, A.W. Bergen, and P. Kraft*, Genome-wide and candidate gene association study of cigarette smoking behaviors. PLoS One, 2009. 4(2): p. e4653.

77. Pezzotti, A., P. Kraft, S.E. Hankinson, D.J. Hunter, J. Buring, and D.G. Cox, The mitochondrial A10398G polymorphism, interaction with alcohol consumption, and breast cancer risk. PLoS One, 2009. 4(4): p. e5356.

78. Lindstrom, S., Y.C. Yen, D. Spiegelman, and P. Kraft, The impact of gene-environment dependence and misclassification in genetic association studies incorporating gene-environment interactions. Hum Hered, 2009. 68(3): p. 171-81.

79. Cornelis, M.C., L. Qi, P. Kraft, and F.B. Hu, TCF7L2, dietary carbohydrate, and risk of type 2 diabetes in US women. Am J Clin Nutr, 2009. 89(4): p. 1256-62.

80. Kraft, P., S. Wacholder, M.C. Cornelis, F.B. Hu, R.B. Hayes, G. Thomas, R. Hoover, D.J. Hunter, and S. Chanock, Beyond odds ratios--communicating disease risk based on genetic profiles. Nat Rev Genet, 2009. 10(4): p. 264-9.

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81. De Vivo, I., J. Prescott, J.Y. Wong, P. Kraft, S.E. Hankinson, and D.J. Hunter, A prospective study of relative telomere length and postmenopausal breast cancer risk. Cancer Epidemiol Biomarkers Prev, 2009. 18(4): p. 1152-6.

82. Cornelis, M.C., L. Qi, C. Zhang, P. Kraft, J. Manson, T. Cai, D.J. Hunter, and F.B. Hu, Joint effects of common genetic variants on the risk for type 2 diabetes in U.S. men and women of European ancestry. Ann Intern Med, 2009. 150(8): p. 541-50.

83. Nan, H., P. Kraft, D.J. Hunter, and J. Han, Genetic variants in pigmentation genes, pigmentary phenotypes, and risk of skin cancer in Caucasians. Int J Cancer, 2009. 125(4): p. 909-17.

84. Lynch, S.M., A. Vrieling, J.H. Lubin, P. Kraft, J.B. Mendelsohn, P. Hartge, F. Canzian, E. Steplowski, A.A. Arslan, M. Gross, K. Helzlsouer, E.J. Jacobs, A. LaCroix, G. Petersen, W. Zheng, D. Albanes, L. Amundadottir, S.A. Bingham, P. Boffetta, M.C. Boutron-Ruault, S.J. Chanock, S. Clipp, R.N. Hoover, K. Jacobs, K.C. Johnson, C. Kooperberg, J. Luo, C. Messina, D. Palli, A.V. Patel, E. Riboli, X.O. Shu, L. Rodriguez Suarez, G. Thomas, A. Tjonneland, G.S. Tobias, E. Tong, D. Trichopoulos, J. Virtamo, W. Ye, K. Yu, A. Zeleniuch-Jacquette, H.B. Bueno-de-Mesquita, and R.Z. Stolzenberg-Solomon, Cigarette smoking and pancreatic cancer: a pooled analysis from the pancreatic cancer cohort consortium. Am J Epidemiol, 2009. 170(4): p. 403-13.

85. Yu, K., Q. Li, A.W. Bergen, R.M. Pfeiffer, P.S. Rosenberg, N. Caporaso, P. Kraft, and N. Chatterjee, Pathway analysis by adaptive combination of P-values. Genet Epidemiol, 2009. 33(8): p. 700-9.

86. Monsees, G.M., R.M. Tamimi, and P. Kraft, Genome-wide association scans for secondary traits using case-control samples. Genet Epidemiol, 2009. 33(8): p. 717-28.

87. Hazra, A., P. Kraft, R. Lazarus, C. Chen, S.J. Chanock, P. Jacques, J. Selhub, and D.J. Hunter, Genome-wide significant predictors of metabolites in the one-carbon metabolism pathway. Hum Mol Genet, 2009. 18(23): p. 4677-87.

88. Kong A, Steinthorsdottir V, Masson G, Thorleifsson G, Sulem P, Besenbacher S, Jonasdottir A, Sigurdsson A, Kristinsson KT, Jonasdottir A, Frigge ML, Gylfason A, Olason PI, Gudjonsson SA, Sverrisson S, Stacey SN, Sigurgeirsson B, Benediktsdottir KR, Sigurdsson H, Jonsson T, Benediktsson R, Olafsson JH, Johannsson OT, Hreidarsson AB, Sigurdsson G; DIAGRAM Consortium, Ferguson-Smith AC, Gudbjartsson DF, Thorsteinsdottir U, Stefansson K. Parental origin of sequence variants associated with complex diseases. Nature. 2009 Dec 17;462(7275):868-74.

89. Willer, C.J., E.K. Speliotes, R.J. Loos, S. Li, C.M. Lindgren, I.M. Heid, S.I. Berndt, A.L. Elliott, A.U. Jackson, C. Lamina, G. Lettre, N. Lim, H.N. Lyon, S.A. McCarroll, K. Papadakis, L. Qi, J.C. Randall, R.M. Roccasecca, S. Sanna, P. Scheet, M.N. Weedon, E. Wheeler, J.H. Zhao, L.C. Jacobs, I. Prokopenko, N. Soranzo, T. Tanaka, N.J. Timpson, P. Almgren, A. Bennett, R.N. Bergman, S.A. Bingham, L.L. Bonnycastle, M. Brown, N.P. Burtt, P. Chines, L. Coin, F.S. Collins, J.M. Connell, C. Cooper, G.D. Smith, E.M. Dennison, P. Deodhar, P. Elliott, M.R. Erdos, K. Estrada, D.M. Evans, L. Gianniny, C. Gieger, C.J. Gillson, C. Guiducci, R. Hackett, D. Hadley, A.S. Hall, A.S. Havulinna, J. Hebebrand, A. Hofman, B. Isomaa, K.B. Jacobs, T. Johnson, P. Jousilahti, Z. Jovanovic, K.T. Khaw, P. Kraft, M. Kuokkanen, J. Kuusisto, J. Laitinen, E.G. Lakatta, J. Luan, R.N. Luben, M. Mangino, W.L. McArdle, T. Meitinger, A. Mulas, P.B. Munroe, N. Narisu, A.R. Ness, K. Northstone, S. O'Rahilly, C. Purmann, M.G. Rees, M. Ridderstrale, S.M. Ring, F. Rivadeneira, A. Ruokonen, M.S. Sandhu, J. Saramies, L.J. Scott, A. Scuteri, K. Silander, M.A. Sims, K. Song, J. Stephens, S. Stevens, H.M. Stringham, Y.C. Tung, T.T. Valle, C.M. Van Duijn, K.S. Vimaleswaran, P. Vollenweider, G. Waeber, C. Wallace, R.M. Watanabe, D.M. Waterworth, N. Watkins, J.C. Witteman, E. Zeggini, G. Zhai, M.C. Zillikens, D. Altshuler, M.J. Caulfield, S.J. Chanock, I.S. Farooqi, L. Ferrucci, J.M. Guralnik, A.T. Hattersley, F.B. Hu, M.R. Jarvelin, M. Laakso, V. Mooser, K.K. Ong, W.H. Ouwehand, V. Salomaa, N.J. Samani, T.D. Spector, T. Tuomi, J. Tuomilehto, M. Uda, A.G. Uitterlinden, N.J. Wareham, P. Deloukas, T.M. Frayling, L.C. Groop, R.B. Hayes, D.J. Hunter, K.L. Mohlke, L. Peltonen, D. Schlessinger, D.P. Strachan, H.E. Wichmann, M.I. McCarthy, M. Boehnke, I. Barroso, G.R. Abecasis and J.N. Hirschhorn, Six new loci associated with body mass index highlight a neuronal influence on body weight regulation. Nat Genet, 2009. 41(1): p. 25-34.

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90. Birmann, B.M., R.M. Tamimi, E. Giovannucci, B. Rosner, D.J. Hunter, P. Kraft, C. Mitsiades, K.C. Anderson, and G.A. Colditz, Insulin-like growth factor-1- and interleukin-6-related gene variation and risk of multiple myeloma. Cancer Epidemiol Biomarkers Prev, 2009. 18(1): p. 282-8.

91. McKay, J.D., M.L. McCullough, R.G. Ziegler, P. Kraft, B.S. Saltzman, E. Riboli, A. Barricarte, C.D. Berg, G. Bergland, S. Bingham, M. Brustad, H.B. Bueno-de-Mesquita, L. Burdette, J. Buring, E.E. Calle, S.J. Chanock, F. Clavel-Chapelon, D.G. Cox, L. Dossus, H.S. Feigelson, C.A. Haiman, S.E. Hankinson, R.N. Hoover, D.J. Hunter, A. Husing, R. Kaaks, L.N. Kolonel, L. Le Marchand, J. Linseisen, C.A. McCarty, K. Overvad, S. Panico, M.P. Purdue, D.O. Stram, V.L. Stevens, D. Trichopoulos, W.C. Willett, J. Yuenger, and M.J. Thun, Vitamin D receptor polymorphisms and breast cancer risk: results from the National Cancer Institute Breast and Prostate Cancer Cohort Consortium. Cancer Epidemiol Biomarkers Prev, 2009. 18(1): p. 297-305.

92. Gu, F., A.A. Qureshi, P. Kraft, Q. Guo, D.J. Hunter, and J. Han, Polymorphisms in genes involved in DNA repair, cell growth, oxidative stress and inflammatory response, and melanoma risk. Br J Dermatol, 2009. 161(1): p. 209-12.

93. He, C., P. Kraft, C. Chen, J.E. Buring, G. Pare, S.E. Hankinson, S.J. Chanock, P.M. Ridker, D.J. Hunter, and D.I. Chasman, Genome-wide association studies identify loci associated with age at menarche and age at natural menopause. Nat Genet, 2009. 41(6): p. 724-8.

94. Stark, J.R., F. Wiklund, H. Gronberg, F. Schumacher, J.A. Sinnott, M.J. Stampfer, L.A. Mucci, and P. Kraft, Toll-like receptor signaling pathway variants and prostate cancer mortality. Cancer Epidemiol Biomarkers Prev, 2009. 18(6): p. 1859-63.

95. Stark, J.R., H. Li, P. Kraft, T. Kurth, E.L. Giovannucci, M.J. Stampfer, J. Ma, and L.A. Mucci, Circulating prediagnostic interleukin-6 and C-reactive protein and prostate cancer incidence and mortality. Int J Cancer, 2009. 124(11): p. 2683-9.

96. Truong, H., J.R. DiBello, E. Ruiz-Narvaez, P. Kraft, H. Campos, and A. Baylin, Does genetic variation in the Delta6-desaturase promoter modify the association between alpha-linolenic acid and the prevalence of metabolic syndrome? Am J Clin Nutr, 2009. 89(3): p. 920-5.

97. Chang, E.T., B.M. Birmann, J.L. Kasperzyk, D.V. Conti, P. Kraft, R.F. Ambinder, T. Zheng, and N.E. Mueller, Polymorphic variation in NFKB1 and other aspirin-related genes and risk of Hodgkin lymphoma. Cancer Epidemiol Biomarkers Prev, 2009. 18(3): p. 976-86.

98. Wolpin, B.M., A.T. Chan, P. Hartge, S.J. Chanock, P. Kraft, D.J. Hunter, E.L. Giovannucci, and C.S. Fuchs, ABO blood group and the risk of pancreatic cancer. J Natl Cancer Inst, 2009. 101(6): p. 424-31.

99. Ogino, S., K. Nosho, G.J. Kirkner, K. Shima, N. Irahara, S. Kure, A.T. Chan, J.A. Engelman, P. Kraft, L.C. Cantley, E.L. Giovannucci, and C.S. Fuchs, PIK3CA mutation is associated with poor prognosis among patients with curatively resected colon cancer. J Clin Oncol, 2009. 27(9): p. 1477-84.

100. Ahmed, S., G. Thomas, M. Ghoussaini, C.S. Healey, M.K. Humphreys, R. Platte, J. Morrison, M. Maranian, K.A. Pooley, R. Luben, D. Eccles, D.G. Evans, O. Fletcher, N. Johnson, I. dos Santos Silva, J. Peto, M.R. Stratton, N. Rahman, K. Jacobs, R. Prentice, G.L. Anderson, A. Rajkovic, J.D. Curb, R.G. Ziegler, C.D. Berg, S.S. Buys, C.A. McCarty, H.S. Feigelson, E.E. Calle, M.J. Thun, W.R. Diver, S. Bojesen, B.G. Nordestgaard, H. Flyger, T. Dork, P. Schurmann, P. Hillemanns, J.H. Karstens, N.V. Bogdanova, N.N. Antonenkova, I.V. Zalutsky, M. Bermisheva, S. Fedorova, E. Khusnutdinova, D. Kang, K.Y. Yoo, D.Y. Noh, S.H. Ahn, P. Devilee, C.J. van Asperen, R.A. Tollenaar, C. Seynaeve, M. Garcia-Closas, J. Lissowska, L. Brinton, B. Peplonska, H. Nevanlinna, T. Heikkinen, K. Aittomaki, C. Blomqvist, J.L. Hopper, M.C. Southey, L. Smith, A.B. Spurdle, M.K. Schmidt, A. Broeks, R.R. van Hien, S. Cornelissen, R.L. Milne, G. Ribas, A. Gonzalez-Neira, J. Benitez, R.K. Schmutzler, B. Burwinkel, C.R. Bartram, A. Meindl, H. Brauch, C. Justenhoven, U. Hamann, J. Chang-Claude, R. Hein, S. Wang-Gohrke, A. Lindblom, S. Margolin, A. Mannermaa, V.M. Kosma, V. Kataja, J.E. Olson, X. Wang, Z. Fredericksen, G.G. Giles, G. Severi, L. Baglietto, D.R. English, S.E. Hankinson, D.G. Cox, P. Kraft, L.J. Vatten, K. Hveem, M. Kumle, A. Sigurdson, M. Doody, P. Bhatti, B.H. Alexander, M.J. Hooning, A.M. van den Ouweland, R.A. Oldenburg, M. Schutte, P. Hall, K. Czene, J. Liu, Y. Li, A. Cox, G. Elliott, I. Brock, M.W. Reed, C.Y. Shen, J.C. Yu, G.C. Hsu, S.T. Chen, H. Anton-Culver, A.

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Ziogas, I.L. Andrulis, J.A. Knight, J. Beesley, E.L. Goode, F. Couch, G. Chenevix-Trench, R.N. Hoover, B.A. Ponder, D.J. Hunter, P.D. Pharoah, A.M. Dunning, S.J. Chanock and D.F. Easton, Newly discovered breast cancer susceptibility loci on 3p24 and 17q23.2. Nat Genet, 2009. 41(5): p. 585-90.

101. Thomas, G., K.B. Jacobs, P. Kraft, M. Yeager, S. Wacholder, D.G. Cox, S.E. Hankinson, A. Hutchinson, Z. Wang, K. Yu, N. Chatterjee, M. Garcia-Closas, J. Gonzalez-Bosquet, L. Prokunina-Olsson, N. Orr, W.C. Willett, G.A. Colditz, R.G. Ziegler, C.D. Berg, S.S. Buys, C.A. McCarty, H.S. Feigelson, E.E. Calle, M.J. Thun, R. Diver, R. Prentice, R. Jackson, C. Kooperberg, R. Chlebowski, J. Lissowska, B. Peplonska, L.A. Brinton, A. Sigurdson, M. Doody, P. Bhatti, B.H. Alexander, J. Buring, I.M. Lee, L.J. Vatten, K. Hveem, M. Kumle, R.B. Hayes, M. Tucker, D.S. Gerhard, J.F. Fraumeni, Jr., R.N. Hoover, S.J. Chanock, and D.J. Hunter, A multistage genome-wide association study in breast cancer identifies two new risk alleles at 1p11.2 and 14q24.1 (RAD51L1). Nat Genet, 2009. 41(5): p. 579-84.

102. Gaudet, M.M., R.L. Milne, A. Cox, N.J. Camp, E.L. Goode, M.K. Humphreys, A.M. Dunning, J. Morrison, G.G. Giles, G. Severi, L. Baglietto, D.R. English, F.J. Couch, J.E. Olson, X. Wang, J. Chang-Claude, D. Flesch-Janys, S. Abbas, R. Salazar, A. Mannermaa, V. Kataja, V.M. Kosma, A. Lindblom, S. Margolin, T. Heikkinen, K. Kampjarvi, K. Aaltonen, H. Nevanlinna, N. Bogdanova, I. Coinac, P. Schurmann, T. Dork, C.R. Bartram, R.K. Schmutzler, S. Tchatchou, B. Burwinkel, H. Brauch, D. Torres, U. Hamann, C. Justenhoven, G. Ribas, J.I. Arias, J. Benitez, S.E. Bojesen, B.G. Nordestgaard, H.L. Flyger, J. Peto, O. Fletcher, N. Johnson, I. Dos Santos Silva, P.A. Fasching, M.W. Beckmann, R. A.B. Ekici, A. Broeks, M.K. Schmidt, F.E. van Leeuwen, L.J. Van't Veer, M.C. Southey, J.L. Hopper, C. Apicella, C.A. Haiman, B.E. Henderson, L. Le Marchand, L.N. Kolonel, V. Kristensen, G. Grenaker Alnaes, D.J. Hunter, P. Kraft, D.G. Cox, S.E. Hankinson, C. Seynaeve, M.P. Vreeswijk, R.A. Tollenaar, P. Devilee, S. Chanock, J. Lissowska, L. Brinton, B. Peplonska, K. Czene, P. Hall, Y. Li, J. Liu, S. Balasubramanian, S. Rafii, M.W. Reed, K.A. Pooley, D. Conroy, C. Baynes, D. Kang, K.Y. Yoo, D.Y. Noh, S.H. Ahn, C.Y. Shen, H.C. Wang, J.C. Yu, P.E. Wu, H. Anton-Culver, A. Ziogoas, K. Egan, P. Newcomb, L. Titus-Ernstoff, A. Trentham Dietz, A.J. Sigurdson, B.H. Alexander, P. Bhatti, K. Allen-Brady, L.A. Cannon-Albright, J. Wong, G. Chenevix-Trench, A.B. Spurdle, J. Beesley, P.D. Pharoah, D.F. Easton and M. Garcia-Closas, Five polymorphisms and breast cancer risk: results from the Breast Cancer Association Consortium. Cancer Epidemiol Biomarkers Prev, 2009. 18(5): p. 1610-6.

103. Lou, H., M. Yeager, H. Li, J.G. Bosquet, R.B. Hayes, N. Orr, K. Yu, A. Hutchinson, K.B. Jacobs, P. Kraft, S. Wacholder, N. Chatterjee, H.S. Feigelson, M.J. Thun, W.R. Diver, D. Albanes, J. Virtamo, S. Weinstein, J. Ma, J.M. Gaziano, M. Stampfer, F.R. Schumacher, E. Giovannucci, G. Cancel-Tassin, O. Cussenot, A. Valeri, G.L. Andriole, E.D. Crawford, S.K. Anderson, M. Tucker, R.N. Hoover, J.F. Fraumeni, Jr., G. Thomas, D.J. Hunter, M. Dean, and S.J. Chanock, Fine mapping and functional analysis of a common variant in MSMB on chromosome 10q11.2 associated with prostate cancer susceptibility. Proc Natl Acad Sci U S A, 2009. 106(19): p. 7933-8.

104. Jacobs, K.B., M. Yeager, S. Wacholder, D. Craig, P. Kraft, D.J. Hunter, J. Paschal, T.A. Manolio, M. Tucker, R.N. Hoover, G.D. Thomas, S.J. Chanock, and N. Chatterjee, A new statistic and its power to infer membership in a genome-wide association study using genotype frequencies. Nat Genet, 2009. 41(11): p. 1253-7.

105. DiBello, J.R., S.T. McGarvey, P. Kraft, R. Goldberg, H. Campos, C. Quested, T.S. Laumoli, and A. Baylin, Dietary patterns are associated with metabolic syndrome in adult Samoans. J Nutr, 2009. 139(10): p. 1933-43.

106. Yeager, M., N. Chatterjee, J. Ciampa, K.B. Jacobs, J. Gonzalez-Bosquet, R.B. Hayes, P. Kraft, S. Wacholder, N. Orr, S. Berndt, K. Yu, A. Hutchinson, Z. Wang, L. Amundadottir, H.S. Feigelson, M.J. Thun, W.R. Diver, D. Albanes, J. Virtamo, S. Weinstein, F.R. Schumacher, G. Cancel-Tassin, O. Cussenot, A. Valeri, G.L. Andriole, E.D. Crawford, C.A. Haiman, B. Henderson, L. Kolonel, L. Le Marchand, A. Siddiq, E. Riboli, T.J. Key, R. Kaaks, W. Isaacs, S. Isaacs, K.E. Wiley, H. Gronberg, F. Wiklund, P. Stattin, J. Xu, S.L. Zheng, J. Sun, L.J. Vatten, K. Hveem, M. Kumle, M. Tucker, D.S.

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Gerhard, R.N. Hoover, J.F. Fraumeni, Jr., D.J. Hunter, G. Thomas, and S.J. Chanock, Identification of a new prostate cancer susceptibility locus on chromosome 8q24. Nat Genet, 2009. 41(10): p. 1055-7.

107. Travis, R.C., F. Schumacher, J.N. Hirschhorn, P. Kraft, N.E. Allen, D. Albanes, G. Berglund, S.I. Berndt, H. Boeing, H.B. Bueno-de-Mesquita, E.E. Calle, S. Chanock, A.M. Dunning, R. Hayes, H.S. Feigelson, J.M. Gaziano, E. Giovannucci, C.A. Haiman, B.E. Henderson, R. Kaaks, L.N. Kolonel, J. Ma, L. Rodriguez, E. Riboli, M. Stampfer, D.O. Stram, M.J. Thun, A. Tjonneland, D. Trichopoulos, P. Vineis, J. Virtamo, L. Le Marchand, and D.J. Hunter, CYP19A1 genetic variation in relation to prostate cancer risk and circulating sex hormone concentrations in men from the Breast and Prostate Cancer Cohort Consortium. Cancer Epidemiol Biomarkers Prev, 2009. 18(10): p. 2734-44.

108. Xu, J., J. Sun, A.K. Kader, S. Lindstrom, F. Wiklund, F.C. Hsu, J.E. Johansson, S.L. Zheng, G. Thomas, R.B. Hayes, P. Kraft, D.J. Hunter, S.J. Chanock, W.B. Isaacs, and H. Gronberg, Estimation of absolute risk for prostate cancer using genetic markers and family history. Prostate, 2009. 69(14): p. 1565-72.

109. Ahn, J., F.R. Schumacher, S.I. Berndt, R. Pfeiffer, D. Albanes, G.L. Andriole, E. Ardanaz, H. Boeing, B. Bueno-de-Mesquita, S.J. Chanock, F. Clavel-Chapelon, W.R. Diver, H.S. Feigelson, J.M. Gaziano, E. Giovannucci, C.A. Haiman, B.E. Henderson, R.N. Hoover, L.N. Kolonel, P. Kraft, J. Ma, L. Le Marchand, K. Overvad, D. Palli, P. Stattin, M. Stampfer, D.O. Stram, G. Thomas, M.J. Thun, R.C. Travis, D. Trichopoulos, J. Virtamo, S.J. Weinstein, M. Yeager, R. Kaaks, D.J. Hunter, and R.B. Hayes, Quantitative trait loci predicting circulating sex steroid hormones in men from the NCI-Breast and Prostate Cancer Cohort Consortium (BPC3). Hum Mol Genet, 2009. 18(19): p. 3749-57.

110. Chen, J., H. Zheng, M.L. Wilson, and P. Kraft, Testing Hardy-Weinberg equilibrium using mother-child case-control samples. Genet Epidemiol, 2009. 33(6): p. 539-48.

111. Nan, H., P. Kraft, A.A. Qureshi, Q. Guo, C. Chen, S.E. Hankinson, F.B. Hu, G. Thomas, R.N. Hoover, S. Chanock, D.J. Hunter, and J. Han, Genome-wide association study of tanning phenotype in a population of European ancestry. J Invest Dermatol, 2009. 129(9): p. 2250-7.

112. Kraft P., L*. Amundadottir, L.*, R.Z. Stolzenberg-Solomon, C.S. Fuchs, G.M. Petersen, A.A. Arslan, H.B. Bueno-de-Mesquita, M. Gross, K. Helzlsouer, E.J. Jacobs, A. LaCroix, W. Zheng, D. Albanes, W. Bamlet, C.D. Berg, F. Berrino, S. Bingham, J.E. Buring, P.M. Bracci, F. Canzian, F. Clavel-Chapelon, S. Clipp, M. Cotterchio, M. de Andrade, E.J. Duell, J.W. Fox, Jr., S. Gallinger, J.M. Gaziano, E.L. Giovannucci, M. Goggins, C.A. Gonzalez, G. Hallmans, S.E. Hankinson, M. Hassan, E.A. Holly, D.J. Hunter, A. Hutchinson, R. Jackson, K.B. Jacobs, M. Jenab, R. Kaaks, A.P. Klein, C. Kooperberg, R.C. Kurtz, D. Li, S.M. Lynch, M. Mandelson, R.R. McWilliams, J.B. Mendelsohn, D.S. Michaud, S.H. Olson, K. Overvad, A.V. Patel, P.H. Peeters, A. Rajkovic, E. Riboli, H.A. Risch, X.O. Shu, G. Thomas, G.S. Tobias, D. Trichopoulos, S.K. Van Den Eeden, J. Virtamo, J. Wactawski-Wende, B.M. Wolpin, H. Yu, K. Yu, A. Zeleniuch-Jacquotte, S.J. Chanock, P. Hartge, and R.N. Hoover, Genome-wide association study identifies variants in the ABO locus associated with susceptibility to pancreatic cancer. Nat Genet, 2009. 41(9): p. 986-90.

113. Loomis, S.J., L.M. Olson, L.R. Pasquale, J. Wiggs, D. Mirel, A. Crenshaw, M. Parkin, B. Rahhal, S. Tetreault, P. Kraft, S.S. Tworoger, J.L. Haines, and J.H. Kang, Feasibility of High-Throughput Genome-Wide Genotyping using DNA from Stored Buccal Cell Samples. Biomark Insights, 2010. 5: p. 49-55.

114. Aschard, H., D.B. Hancock, S.J. London, and P. Kraft, Genome-wide meta-analysis of joint tests for genetic and gene-environment interaction effects. Hum Hered, 2010. 70(4): p. 292-300.

115. He, M., M.C. Cornelis, P. Kraft, R.M. van Dam, Q. Sun, C.C. Laurie, D.B. Mirel, D.I. Chasman, P.M. Ridker, D.J. Hunter, F.B. Hu, and L. Qi, Genome-wide association study identifies variants at the IL18-BCO2 locus associated with interleukin-18 levels. Arterioscler Thromb Vasc Biol, 2010. 30(4): p. 885-90.

116. Azzato, E.M., P.D. Pharoah, P. Harrington, D.F. Easton, D. Greenberg, N.E. Caporaso, S.J. Chanock, R.N. Hoover, G. Thomas, D.J. Hunter, and P. Kraft, A genome-wide association study of prognosis in breast cancer. Cancer Epidemiol Biomarkers Prev, 2010. 19(4): p. 1140-3.

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117. Derti, A., C. Cenik, P. Kraft, and F.P. Roth, Absence of evidence for MHC-dependent mate selection within HapMap populations. PLoS Genet, 2010. 6(4): p. e1000925.

118. Michaud, D.S., A. Vrieling, L. Jiao, J.B. Mendelsohn, E. Steplowski, S.M. Lynch, J. Wactawski-Wende, A.A. Arslan, H. Bas Bueno-de-Mesquita, C.S. Fuchs, M. Gross, K. Helzlsouer, E.J. Jacobs, A. Lacroix, G. Petersen, W. Zheng, N. Allen, L. Ammundadottir, M.M. Bergmann, P. Boffetta, J.E. Buring, F. Canzian, S.J. Chanock, F. Clavel-Chapelon, S. Clipp, M.S. Freiberg, J. Michael Gaziano, E.L. Giovannucci, S. Hankinson, P. Hartge, R.N. Hoover, F. Allan Hubbell, D.J. Hunter, A. Hutchinson, K. Jacobs, C. Kooperberg, P. Kraft, J. Manjer, C. Navarro, P.H. Peeters, X.O. Shu, V. Stevens, G. Thomas, A. Tjonneland, G.S. Tobias, D. Trichopoulos, R. Tumino, P. Vineis, J. Virtamo, R. Wallace, B.M. Wolpin, K. Yu, A. Zeleniuch-Jacquotte, and R.Z. Stolzenberg-Solomon, Alcohol intake and pancreatic cancer: a pooled analysis from the pancreatic cancer cohort consortium (PanScan). Cancer Causes Control, 2010. 21(8): p. 1213-25.

119. Saccone, N.L., R.C. Culverhouse, T.H. Schwantes-An, D.S. Cannon, X. Chen, S. Cichon, I. Giegling, S. Han, Y. Han, K. Keskitalo-Vuokko, X. Kong, M.T. Landi, J.Z. Ma, S.E. Short, S.H. Stephens, V.L. Stevens, L. Sun, Y. Wang, A.S. Wenzlaff, S.H. Aggen, N. Breslau, P. Broderick, N. Chatterjee, J. Chen, A.C. Heath, M. Heliovaara, N.R. Hoft, D.J. Hunter, M.K. Jensen, N.G. Martin, G.W. Montgomery, T. Niu, T.J. Payne, L. Peltonen, M.L. Pergadia, J.P. Rice, R. Sherva, M.R. Spitz, J. Sun, J.C. Wang, R.B. Weiss, W. Wheeler, S.H. Witt, B.Z. Yang, N.E. Caporaso, M.A. Ehringer, T. Eisen, S.M. Gapstur, J. Gelernter, R. Houlston, J. Kaprio, K.S. Kendler, P. Kraft, M.F. Leppert, M.D. Li, P.A. Madden, M.M. Nothen, S. Pillai, M. Rietschel, D. Rujescu, A. Schwartz, C.I. Amos, and L.J. Bierut, Multiple independent loci at chromosome 15q25.1 affect smoking quantity: a meta-analysis and comparison with lung cancer and COPD. PLoS Genet, 2010. 6(8).

120. Schumacher, F.R., I. Cheng, M.L. Freedman, L. Mucci, N.E. Allen, M.N. Pollak, R.B. Hayes, D.O. Stram, F. Canzian, B.E. Henderson, D.J. Hunter, J. Virtamo, J. Manjer, J.M. Gaziano, L.N. Kolonel, A. Tjonneland, D. Albanes, E.E. Calle, E. Giovannucci, E.D. Crawford, C.A. Haiman, P. Kraft, W.C. Willett, M.J. Thun, L. Le Marchand, R. Kaaks, H.S. Feigelson, H.B. Bueno-de-Mesquita, D. Palli, E. Riboli, E. Lund, P. Amiano, G. Andriole, A.M. Dunning, D. Trichopoulos, M.J. Stampfer, T.J. Key, and J. Ma, A comprehensive analysis of common IGF1, IGFBP1 and IGFBP3 genetic variation with prospective IGF-I and IGFBP-3 blood levels and prostate cancer risk among Caucasians. Hum Mol Genet, 2010. 19(15): p. 3089-101.

121. Wolpin, B.M., P. Kraft, M. Xu, E. Steplowski, M.L. Olsson, A.A. Arslan, H.B. Bueno-de-Mesquita, M. Gross, K. Helzlsouer, E.J. Jacobs, A. LaCroix, G. Petersen, R.Z. Stolzenberg-Solomon, W. Zheng, D. Albanes, N.E. Allen, L. Amundadottir, M.A. Austin, M.C. Boutron-Ruault, J.E. Buring, F. Canzian, S.J. Chanock, J.M. Gaziano, E.L. Giovannucci, G. Hallmans, S.E. Hankinson, R.N. Hoover, D.J. Hunter, A. Hutchinson, K.B. Jacobs, C. Kooperberg, J.B. Mendelsohn, D.S. Michaud, K. Overvad, A.V. Patel, M.J. Sanchez, L. Sansbury, X.O. Shu, N. Slimani, G.S. Tobias, D. Trichopoulos, P. Vineis, K. Visvanathan, J. Virtamo, J. Wactawski-Wende, J. Watters, K. Yu, A. Zeleniuch-Jacquotte, P. Hartge, and C.S. Fuchs, Variant ABO blood group alleles, secretor status, and risk of pancreatic cancer: results from the pancreatic cancer cohort consortium. Cancer Epidemiol Biomarkers Prev, 2010. 19(12): p. 3140-9.

122. Elks, C.E., J.R. Perry, P. Sulem, D.I. Chasman, N. Franceschini, C. He, K.L. Lunetta, J.A. Visser, E.M. Byrne, D.L. Cousminer, D.F. Gudbjartsson, T. Esko, B. Feenstra, J.J. Hottenga, D.L. Koller, Z. Kutalik, P. Lin, M. Mangino, M. Marongiu, P.F. McArdle, A.V. Smith, L. Stolk, S.H. van Wingerden, J.H. Zhao, E. Albrecht, T. Corre, E. Ingelsson, C. Hayward, P.K. Magnusson, E.N. Smith, S. Ulivi, N.M. Warrington, L. Zgaga, H. Alavere, N. Amin, T. Aspelund, S. Bandinelli, I. Barroso, G.S. Berenson, S. Bergmann, H. Blackburn, E. Boerwinkle, J.E. Buring, F. Busonero, H. Campbell, S.J. Chanock, W. Chen, M.C. Cornelis, D. Couper, A.D. Coviello, P. d'Adamo, U. de Faire, E.J. de Geus, P. Deloukas, A. Doring, G.D. Smith, D.F. Easton, G. Eiriksdottir, V. Emilsson, J. Eriksson, L. Ferrucci, A.R. Folsom, T. Foroud, M. Garcia, P. Gasparini, F. Geller, C. Gieger, V. Gudnason, P. Hall, S.E. Hankinson, L. Ferreli, A.C. Heath, D.G. Hernandez, A. Hofman, F.B. Hu, T. Illig, M.R. Jarvelin, A.D. Johnson, D. Karasik, K.T. Khaw, D.P. Kiel, T.O. Kilpelainen, I. Kolcic, P. Kraft, L.J. Launer, J.S. Laven, S. Li, J. Liu, D.

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Levy, N.G. Martin, W.L. McArdle, M. Melbye, V. Mooser, J.C. Murray, S.S. Murray, M.A. Nalls, P. Navarro, M. Nelis, A.R. Ness, K. Northstone, B.A. Oostra, M. Peacock, L.J. Palmer, A. Palotie, G. Pare, A.N. Parker, N.L. Pedersen, L. Peltonen, C.E. Pennell, P. Pharoah, O. Polasek, A.S. Plump, A. Pouta, E. Porcu, T. Rafnar, J.P. Rice, S.M. Ring, F. Rivadeneira, I. Rudan, C. Sala, V. Salomaa, S. Sanna, D. Schlessinger, N.J. Schork, A. Scuteri, A.V. Segre, A.R. Shuldiner, N. Soranzo, U. Sovio, S.R. Srinivasan, D.P. Strachan, M.L. Tammesoo, E. Tikkanen, D. Toniolo, K. Tsui, L. Tryggvadottir, J. Tyrer, M. Uda, R.M. van Dam, J.B. van Meurs, P. Vollenweider, G. Waeber, N.J. Wareham, D.M. Waterworth, M.N. Weedon, H.E. Wichmann, G. Willemsen, J.F. Wilson, A.F. Wright, L. Young, G. Zhai, W.V. Zhuang, L.J. Bierut, D.I. Boomsma, H.A. Boyd, L. Crisponi, E.W. Demerath, C.M. van Duijn, M.J. Econs, T.B. Harris, D.J. Hunter, R.J. Loos, A. Metspalu, G.W. Montgomery, P.M. Ridker, T.D. Spector, E.A. Streeten, K. Stefansson, U. Thorsteinsdottir, A.G. Uitterlinden, E. Widen, J.M. Murabito, K.K. Ong and A. Murray, Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies. Nat Genet, 2010. 42(12): p. 1077-85.

123. Wolpin, B.M., P. Kraft, M. Gross, K. Helzlsouer, H.B. Bueno-de-Mesquita, E. Steplowski, R.Z. Stolzenberg-Solomon, A.A. Arslan, E.J. Jacobs, A. Lacroix, G. Petersen, W. Zheng, D. Albanes, N.E. Allen, L. Amundadottir, G. Anderson, M.C. Boutron-Ruault, J.E. Buring, F. Canzian, S.J. Chanock, S. Clipp, J.M. Gaziano, E.L. Giovannucci, G. Hallmans, S.E. Hankinson, R.N. Hoover, D.J. Hunter, A. Hutchinson, K. Jacobs, C. Kooperberg, S.M. Lynch, J.B. Mendelsohn, D.S. Michaud, K. Overvad, A.V. Patel, A. Rajkovic, M.J. Sanchez, X.O. Shu, N. Slimani, G. Thomas, G.S. Tobias, D. Trichopoulos, P. Vineis, J. Virtamo, J. Wactawski-Wende, K. Yu, A. Zeleniuch-Jacquotte, P. Hartge, and C.S. Fuchs, Pancreatic cancer risk and ABO blood group alleles: results from the pancreatic cancer cohort consortium. Cancer Res, 2010. 70(3): p. 1015-23.

124. Karageorgi, S., S.E. Hankinson, P. Kraft, and I. De Vivo, Reproductive factors and postmenopausal hormone use in relation to endometrial cancer risk in the Nurses' Health Study cohort 1976-2004. Int J Cancer, 2010. 126(1): p. 208-16.

125. Voight, B.F., L.J. Scott, V. Steinthorsdottir, A.P. Morris, C. Dina, R.P. Welch, E. Zeggini, C. Huth, Y.S. Aulchenko, G. Thorleifsson, L.J. McCulloch, T. Ferreira, H. Grallert, N. Amin, G. Wu, C.J. Willer, S. Raychaudhuri, S.A. McCarroll, C. Langenberg, O.M. Hofmann, J. Dupuis, L. Qi, A.V. Segre, M. van Hoek, P. Navarro, K. Ardlie, B. Balkau, R. Benediktsson, A.J. Bennett, R. Blagieva, E. Boerwinkle, L.L. Bonnycastle, K. Bengtsson Bostrom, B. Bravenboer, S. Bumpstead, N.P. Burtt, G. Charpentier, P.S. Chines, M. Cornelis, D.J. Couper, G. Crawford, A.S. Doney, K.S. Elliott, A.L. Elliott, M.R. Erdos, C.S. Fox, C.S. Franklin, M. Ganser, C. Gieger, N. Grarup, T. Green, S. Griffin, C.J. Groves, C. Guiducci, S. Hadjadj, N. Hassanali, C. Herder, B. Isomaa, A.U. Jackson, P.R. Johnson, T. Jorgensen, W.H. Kao, N. Klopp, A. Kong, P. Kraft, J. Kuusisto, T. Lauritzen, M. Li, A. Lieverse, C.M. Lindgren, V. Lyssenko, M. Marre, T. Meitinger, K. Midthjell, M.A. Morken, N. Narisu, P. Nilsson, K.R. Owen, F. Payne, J.R. Perry, A.K. Petersen, C. Platou, C. Proenca, I. Prokopenko, W. Rathmann, N.W. Rayner, N.R. Robertson, G. Rocheleau, M. Roden, M.J. Sampson, R. Saxena, B.M. Shields, P. Shrader, G. Sigurdsson, T. Sparso, K. Strassburger, H.M. Stringham, Q. Sun, A.J. Swift, B. Thorand, J. Tichet, T. Tuomi, R.M. van Dam, T.W. van Haeften, T. van Herpt, J.V. van Vliet-Ostaptchouk, G.B. Walters, M.N. Weedon, C. Wijmenga, J. Witteman, R.N. Bergman, S. Cauchi, F.S. Collins, A.L. Gloyn, U. Gyllensten, T. Hansen, W.A. Hide, G.A. Hitman, A. Hofman, D.J. Hunter, K. Hveem, M. Laakso, K.L. Mohlke, A.D. Morris, C.N. Palmer, P.P. Pramstaller, I. Rudan, E. Sijbrands, L.D. Stein, J. Tuomilehto, A. Uitterlinden, M. Walker, N.J. Wareham, R.M. Watanabe, G.R. Abecasis, B.O. Boehm, H. Campbell, M.J. Daly, A.T. Hattersley, F.B. Hu, J.B. Meigs, J.S. Pankow, O. Pedersen, H.E. Wichmann, I. Barroso, J.C. Florez, T.M. Frayling, L. Groop, R. Sladek, U. Thorsteinsdottir, J.F. Wilson, T. Illig, P. Froguel, C.M. van Duijn, K. Stefansson, D. Altshuler, M. Boehnke and M.I. McCarthy, Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis. Nat Genet, 2010. 42(7): p. 579-89.

126. Ahn, J., K. Yu, R. Stolzenberg-Solomon, K.C. Simon, M.L. McCullough, L. Gallicchio, E.J. Jacobs, A. Ascherio, K. Helzlsouer, K.B. Jacobs, Q. Li, S.J. Weinstein, M. Purdue, J. Virtamo, R. Horst, W.

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Wheeler, S. Chanock, D.J. Hunter, R.B. Hayes, P. Kraft, and D. Albanes, Genome-wide association study of circulating vitamin D levels. Hum Mol Genet, 2010. 19(13): p. 2739-45.

127. Qi, L., M.C. Cornelis, P. Kraft, K.J. Stanya, W.H. Linda Kao, J.S. Pankow, J. Dupuis, J.C. Florez, C.S. Fox, G. Pare, Q. Sun, C.J. Girman, C.C. Laurie, D.B. Mirel, T.A. Manolio, D.I. Chasman, E. Boerwinkle, P.M. Ridker, D.J. Hunter, J.B. Meigs, C.H. Lee, F.B. Hu, and R.M. van Dam, Genetic variants at 2q24 are associated with susceptibility to type 2 diabetes. Hum Mol Genet, 2010. 19(13): p. 2706-15.

128. Karlson, E.W., L.B. Chibnik, P. Kraft, J. Cui, B.T. Keenan, B. Ding, S. Raychaudhuri, L. Klareskog, L. Alfredsson, and R.M. Plenge, Cumulative association of 22 genetic variants with seropositive rheumatoid arthritis risk. Ann Rheum Dis, 2010. 69(6): p. 1077-85.

129. Menashe, I., D. Maeder, M. Garcia-Closas, J.D. Figueroa, S. Bhattacharjee, M. Rotunno, P. Kraft, D.J. Hunter, S.J. Chanock, P.S. Rosenberg, and N. Chatterjee, Pathway analysis of breast cancer genome-wide association study highlights three pathways and one canonical signaling cascade. Cancer Res, 2010. 70(11): p. 4453-9.

130. Wu, M.C., P. Kraft, M.P. Epstein, D.M. Taylor, S.J. Chanock, D.J. Hunter, and X. Lin, Powerful SNP-set analysis for case-control genome-wide association studies. Am J Hum Genet, 2010. 86(6): p. 929-42.

131. Dossus, L., R. Kaaks, F. Canzian, D. Albanes, S.I. Berndt, H. Boeing, J. Buring, S.J. Chanock, F. Clavel-Chapelon, H.S. Feigelson, J.M. Gaziano, E. Giovannucci, C. Gonzalez, C.A. Haiman, G. Hallmans, S.E. Hankinson, R.B. Hayes, B.E. Henderson, R.N. Hoover, D.J. Hunter, K.T. Khaw, L.N. Kolonel, P. Kraft, J. Ma, L. Le Marchand, E. Lund, P.H. Peeters, M. Stampfer, D.O. Stram, G. Thomas, M.J. Thun, A. Tjonneland, D. Trichopoulos, R. Tumino, E. Riboli, J. Virtamo, S.J. Weinstein, M. Yeager, R.G. Ziegler, and D.G. Cox, PTGS2 and IL6 genetic variation and risk of breast and prostate cancer: results from the Breast and Prostate Cancer Cohort Consortium (BPC3). Carcinogenesis, 2010. 31(3): p. 455-61.

132. Kraft, P.*, G.M. Petersen, *, L. Amundadottir*, C.S. Fuchs*, R.Z. Stolzenberg-Solomon, K.B. Jacobs, A.A. Arslan, H.B. Bueno-de-Mesquita, S. Gallinger, M. Gross, K. Helzlsouer, E.A. Holly, E.J. Jacobs, A.P. Klein, A. LaCroix, D. Li, M.T. Mandelson, S.H. Olson, H.A. Risch, W. Zheng, D. Albanes, W.R. Bamlet, C.D. Berg, M.C. Boutron-Ruault, J.E. Buring, P.M. Bracci, F. Canzian, S. Clipp, M. Cotterchio, M. de Andrade, E.J. Duell, J.M. Gaziano, E.L. Giovannucci, M. Goggins, G. Hallmans, S.E. Hankinson, M. Hassan, B. Howard, D.J. Hunter, A. Hutchinson, M. Jenab, R. Kaaks, C. Kooperberg, V. Krogh, R.C. Kurtz, S.M. Lynch, R.R. McWilliams, J.B. Mendelsohn, D.S. Michaud, H. Parikh, A.V. Patel, P.H. Peeters, A. Rajkovic, E. Riboli, L. Rodriguez, D. Seminara, X.O. Shu, G. Thomas, A. Tjonneland, G.S. Tobias, D. Trichopoulos, S.K. Van Den Eeden, J. Virtamo, J. Wactawski-Wende, Z. Wang, B.M. Wolpin, H. Yu, K. Yu, A. Zeleniuch-Jacquotte, J.F. Fraumeni, Jr., R.N. Hoover, P. Hartge, and S.J. Chanock, A genome-wide association study identifies pancreatic cancer susceptibility loci on chromosomes 13q22.1, 1q32.1 and 5p15.33. Nat Genet, 2010. 42(3): p. 224-8.

133. Lindstrom, S., D.J. Hunter, H. Gronberg, P. Stattin, F. Wiklund, J. Xu, S.J. Chanock, R. Hayes, and P. Kraft, Sequence variants in the TLR4 and TLR6-1-10 genes and prostate cancer risk. Results based on pooled analysis from three independent studies. Cancer Epidemiol Biomarkers Prev, 2010. 19(3): p. 873-6.

134. Paulus, J.K., K. Asomaning, P. Kraft, B.E. Johnson, X. Lin, and D.C. Christiani, Parity and risk of lung cancer in women. Am J Epidemiol, 2010. 171(5): p. 557-63.

135. Bhattacharjee, S., Z. Wang, J. Ciampa, P. Kraft, S. Chanock, K. Yu, and N. Chatterjee, Using principal components of genetic variation for robust and powerful detection of gene-gene interactions in case-control and case-only studies. Am J Hum Genet, 2010. 86(3): p. 331-42.

136. Koutros, S., F.R. Schumacher, R.B. Hayes, J. Ma, W.Y. Huang, D. Albanes, F. Canzian, S.J. Chanock, E.D. Crawford, W.R. Diver, H.S. Feigelson, E. Giovanucci, C.A. Haiman, B.E. Henderson, D.J. Hunter, R. Kaaks, L.N. Kolonel, P. Kraft, L. Le Marchand, E. Riboli, A. Siddiq, M.J. Stampfer, D.O. Stram, G.

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Thomas, R.C. Travis, M.J. Thun, M. Yeager, and S.I. Berndt, Pooled analysis of phosphatidylinositol 3-kinase pathway variants and risk of prostate cancer. Cancer Res, 2010. 70(6): p. 2389-96.

137. Wacholder, S., P. Hartge, R. Prentice, M. Garcia-Closas, H.S. Feigelson, W.R. Diver, M.J. Thun, D.G. Cox, S.E. Hankinson, P. Kraft, B. Rosner, C.D. Berg, L.A. Brinton, J. Lissowska, M.E. Sherman, R. Chlebowski, C. Kooperberg, R.D. Jackson, D.W. Buckman, P. Hui, R. Pfeiffer, K.B. Jacobs, G.D. Thomas, R.N. Hoover, M.H. Gail, S.J. Chanock, and D.J. Hunter, Performance of common genetic variants in breast-cancer risk models. N Engl J Med, 2010. 362(11): p. 986-93.

138. Prokunina-Olsson, L., Y.P. Fu, W. Tang, K.B. Jacobs, R.B. Hayes, P. Kraft, S.I. Berndt, S. Wacholder, K. Yu, A. Hutchinson, H. Spencer Feigelson, M.J. Thun, W.R. Diver, D. Albanes, J. Virtamo, S. Weinstein, F.R. Schumacher, G. Cancel-Tassin, O. Cussenot, A. Valeri, G.L. Andriole, E.D. Crawford, C.A. Haiman, B.E. Henderson, L. Kolonel, L. Le Marchand, A. Siddiq, E. Riboli, R. Travis, R. Kaaks, W.B. Isaacs, S.D. Isaacs, H. Gronberg, F. Wiklund, J. Xu, L.J. Vatten, K. Hveem, M. Kumle, M. Tucker, R.N. Hoover, J.F. Fraumeni, Jr., D.J. Hunter, G. Thomas, N. Chatterjee, S.J. Chanock, and M. Yeager, Refining the prostate cancer genetic association within the JAZF1 gene on chromosome 7p15.2. Cancer Epidemiol Biomarkers Prev, 2010. 19(5): p. 1349-55.

139. The Tobacco and Genetics Consortium, Furberg H, Kim Y, Dackor J, Boerwinkle E, Franceschini N, Ardissino D, Bernardinelli L, Mannucci PM, Mauri F, Merlini PA, Absher D, Assimes TL, Fortmann SP, Iribarren C, Knowles JW, Quertermous T, Ferrucci L, Tanaka T, Bis JC, Furberg CD, Haritunians T, McKnight B, Psaty BM, Taylor KD, Thacker EL, Almgren P, Groop L, Ladenvall C, Boehnke M, Jackson AU, Mohlke KL, Stringham HM, Tuomilehto J, Benjamin EJ, Hwang SJ, Levy D, Preis SR, Vasan RS, Duan J, Gejman PV, Levinson DF, Sanders AR, Shi J, Lips EH, McKay JD, Agudo A, Barzan L, Bencko V, Benhamou S, Castellsagué X, Canova C, Conway DI, Fabianova E, Foretova L, Janout V, Healy CM, Holcátová I, Kjaerheim K, Lagiou P, Lissowska J, Lowry R, Macfarlane TV, Mates D, Richiardi L, Rudnai P, Szeszenia-Dabrowska N, Zaridze D, Znaor A, Lathrop M, Brennan P, Bandinelli S, Frayling TM, Guralnik JM, Milaneschi Y, Perry JR, Altshuler D, Elosua R, Kathiresan S, Lucas G, Melander O, O'Donnell CJ, Salomaa V, Schwartz SM, Voight BF, Penninx BW, Smit JH, Vogelzangs N, Boomsma DI, de Geus EJ, Vink JM, Willemsen G, Chanock SJ, Gu F, Hankinson SE, Hunter DJ, Hofman A, Tiemeier H, Uitterlinden AG, van Duijn CM, Walter S, Chasman DI, Everett BM, Paré G, Ridker PM, Li MD, Maes HH, Audrain-McGovern J, Posthuma D, Thornton LM, Lerman C, Kaprio J, Rose JE, Ioannidis JP, Kraft P, Lin DY, Sullivan PF. Genome-wide meta-analyses identify multiple loci associated with smoking behavior. Nat Genet. 2010 May;42(5):441-7. PMCID: PMC2914600.

140. Penney, K.L., F.R. Schumacher, H. Li, P. Kraft, J.S. Morris, T. Kurth, L.A. Mucci, D.J. Hunter, P.W. Kantoff, M.J. Stampfer, and J. Ma, A large prospective study of SEP15 genetic variation, interaction with plasma selenium levels, and prostate cancer risk and survival. Cancer Prev Res (Phila), 2010. 3(5): p. 604-10.

141. Qi, L., M.C. Cornelis, P. Kraft, M. Jensen, R.M. van Dam, Q. Sun, C.J. Girman, C.C. Laurie, D.B. Mirel, D.J. Hunter, E. Rimm, and F.B. Hu, Genetic variants in ABO blood group region, plasma soluble E-selectin levels and risk of type 2 diabetes. Hum Mol Genet, 2010. 19(9): p. 1856-62.

142. Sun, Q., M.C. Cornelis, P. Kraft, L. Qi, R.M. van Dam, C.J. Girman, C.C. Laurie, D.B. Mirel, H. Gong, C.C. Sheu, D.C. Christiani, D.J. Hunter, C.S. Mantzoros, and F.B. Hu, Genome-wide association study identifies polymorphisms in LEPR as determinants of plasma soluble leptin receptor levels. Hum Mol Genet, 2010. 19(9): p. 1846-55.

143. Arslan, A.A., K.J. Helzlsouer, C. Kooperberg, X.O. Shu, E. Steplowski, H.B. Bueno-de-Mesquita, C.S. Fuchs, M.D. Gross, E.J. Jacobs, A.Z. Lacroix, G.M. Petersen, R.Z. Stolzenberg-Solomon, W. Zheng, D. Albanes, L. Amundadottir, W.R. Bamlet, A. Barricarte, S.A. Bingham, H. Boeing, M.C. Boutron-Ruault, J.E. Buring, S.J. Chanock, S. Clipp, J.M. Gaziano, E.L. Giovannucci, S.E. Hankinson, P. Hartge, R.N. Hoover, D.J. Hunter, A. Hutchinson, K.B. Jacobs, P. Kraft, S.M. Lynch, J. Manjer, J.E. Manson, A. McTiernan, R.R. McWilliams, J.B. Mendelsohn, D.S. Michaud, D. Palli, T.E. Rohan, N. Slimani, G. Thomas, A. Tjonneland, G.S. Tobias, D. Trichopoulos, J. Virtamo, B.M. Wolpin, K. Yu, A. Zeleniuch-

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144. Elliott KS, Zeggini E, McCarthy MI, Gudmundsson J, Sulem P, Stacey SN, Thorlacius S, Amundadottir L, Grönberg H, Xu J, Gaborieau V, Eeles RA, Neal DE, Donovan JL, Hamdy FC, Muir K, Hwang SJ, Spitz MR, Zanke B, Carvajal-Carmona L, Brown KM; Australian Melanoma Family Study Investigators, Hayward NK, Macgregor S, Tomlinson IP, Lemire M, Amos CI, Murabito JM, Isaacs WB, Easton DF, Brennan P; PanScan Consortium, Barkardottir RB, Gudbjartsson DF, Rafnar T, Hunter DJ, Chanock SJ, Stefansson K, Ioannidis JP. Evaluation of association of HNF1B variants with diverse cancers: collaborative analysis of data from 19 genome-wide association studies. PLoS One. 2010 May 28;5(5):e10858. PMCID: PMC2878330.

145. He, C., P. Kraft, D.I. Chasman, J.E. Buring, C. Chen, S.E. Hankinson, G. Pare, S. Chanock, P.M. Ridker, and D.J. Hunter, A large-scale candidate gene association study of age at menarche and age at natural menopause. Hum Genet, 2010. 128(5): p. 515-27.

146. Gu, F., F.R. Schumacher, F. Canzian, N.E. Allen, D. Albanes, C.D. Berg, S.I. Berndt, H. Boeing, H.B. Bueno-de-Mesquita, J.E. Buring, N. Chabbert-Buffet, S.J. Chanock, F. Clavel-Chapelon, V. Dumeaux, J.M. Gaziano, E.L. Giovannucci, C.A. Haiman, S.E. Hankinson, R.B. Hayes, B.E. Henderson, D.J. Hunter, R.N. Hoover, M. Johansson, T.J. Key, K.T. Khaw, L.N. Kolonel, P. Lagiou, I.M. Lee, L. LeMarchand, E. Lund, J. Ma, N.C. Onland-Moret, K. Overvad, L. Rodriguez, C. Sacerdote, M.J. Sanchez, M.J. Stampfer, P. Stattin, D.O. Stram, G. Thomas, M.J. Thun, A. Tjonneland, D. Trichopoulos, R. Tumino, J. Virtamo, S.J. Weinstein, W.C. Willett, M. Yeager, S.M. Zhang, R. Kaaks, E. Riboli, R.G. Ziegler, and P. Kraft, Eighteen insulin-like growth factor pathway genes, circulating levels of IGF-I and its binding protein, and risk of prostate and breast cancer. Cancer Epidemiol Biomarkers Prev, 2010. 19(11): p. 2877-87.

147. Wolpin, B.M., C. Kabrhel, R. Varraso, P. Kraft, E.B. Rimm, S.Z. Goldhaber, C.A. Camargo, Jr., and C.S. Fuchs, Prospective study of ABO blood type and the risk of pulmonary embolism in two large cohort studies. Thromb Haemost, 2010. 104(5): p. 962-71.

148. Heid, I.M., A.U. Jackson, J.C. Randall, T.W. Winkler, L. Qi, V. Steinthorsdottir, G. Thorleifsson, M.C. Zillikens, E.K. Speliotes, R. Magi, T. Workalemahu, C.C. White, N. Bouatia-Naji, T.B. Harris, S.I. Berndt, E. Ingelsson, C.J. Willer, M.N. Weedon, J. Luan, S. Vedantam, T. Esko, T.O. Kilpelainen, Z. Kutalik, S. Li, K.L. Monda, A.L. Dixon, C.C. Holmes, L.M. Kaplan, L. Liang, J.L. Min, M.F. Moffatt, C. Molony, G. Nicholson, E.E. Schadt, K.T. Zondervan, M.F. Feitosa, T. Ferreira, H.L. Allen, R.J. Weyant, E. Wheeler, A.R. Wood, K. Estrada, M.E. Goddard, G. Lettre, M. Mangino, D.R. Nyholt, S. Purcell, A.V. Smith, P.M. Visscher, J. Yang, S.A. McCarroll, J. Nemesh, B.F. Voight, D. Absher, N. Amin, T. Aspelund, L. Coin, N.L. Glazer, C. Hayward, N.L. Heard-Costa, J.J. Hottenga, A. Johansson, T. Johnson, M. Kaakinen, K. Kapur, S. Ketkar, J.W. Knowles, P. Kraft, A.T. Kraja, C. Lamina, M.F. Leitzmann, B. McKnight, A.P. Morris, K.K. Ong, J.R. Perry, M.J. Peters, O. Polasek, I. Prokopenko, N.W. Rayner, S. Ripatti, F. Rivadeneira, N.R. Robertson, S. Sanna, U. Sovio, I. Surakka, A. Teumer, S. van Wingerden, V. Vitart, J.H. Zhao, C. Cavalcanti-Proenca, P.S. Chines, E. Fisher, J.R. Kulzer, C. Lecoeur, N. Narisu, C. Sandholt, L.J. Scott, K. Silander, K. Stark, M.L. Tammesoo, T.M. Teslovich, N.J. Timpson, R.M. Watanabe, R. Welch, D.I. Chasman, M.N. Cooper, J.O. Jansson, J. Kettunen, R.W. Lawrence, N. Pellikka, M. Perola, L. Vandenput, H. Alavere, P. Almgren, L.D. Atwood, A.J. Bennett, R. Biffar, L.L. Bonnycastle, S.R. Bornstein, T.A. Buchanan, H. Campbell, I.N. Day, M. Dei, M. Dorr, P. Elliott, M.R. Erdos, J.G. Eriksson, N.B. Freimer, M. Fu, S. Gaget, E.J. Geus, A.P. Gjesing, H. Grallert, J. Grassler, C.J. Groves, C. Guiducci, A.L. Hartikainen, N. Hassanali, A.S. Havulinna, K.H. Herzig, A.A. Hicks, J. Hui, W. Igl, P. Jousilahti, A. Jula, E. Kajantie, L. Kinnunen, I. Kolcic, S. Koskinen, P. Kovacs, H.K. Kroemer, V. Krzelj, J. Kuusisto, K. Kvaloy, J. Laitinen, O. Lantieri, G.M. Lathrop, M.L. Lokki, R.N. Luben, B. Ludwig, W.L. McArdle, A. McCarthy, M.A. Morken, M. Nelis, M.J. Neville, G. Pare, A.N. Parker, J.F. Peden, I. Pichler, K.H. Pietilainen, C.G. Platou, A. Pouta, M. Ridderstrale, N.J. Samani, J. Saramies, J. Sinisalo, J.H. Smit, R.J. Strawbridge, H.M. Stringham, A.J. Swift, M. Teder-

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165. Campa, D., R. Kaaks, L. Le Marchand, C.A. Haiman, R.C. Travis, C.D. Berg, J.E. Buring, S.J. Chanock, W.R. Diver, L. Dostal, A. Fournier, S.E. Hankinson, B.E. Henderson, R.N. Hoover, C. Isaacs, M. Johansson, L.N. Kolonel, P. Kraft, I.M. Lee, C.A. McCarty, K. Overvad, S. Panico, P.H. Peeters, E. Riboli, M.J. Sanchez, F.R. Schumacher, G. Skeie, D.O. Stram, M.J. Thun, D. Trichopoulos, S. Zhang, R.G. Ziegler, D.J. Hunter, S. Lindstrom, and F. Canzian, Interactions between genetic variants and breast cancer risk factors in the breast and prostate cancer cohort consortium. J Natl Cancer Inst, 2011. 103(16): p. 1252-63.

166. Beckmann, L., A. Husing, V.W. Setiawan, P. Amiano, F. Clavel-Chapelon, S.J. Chanock, D.G. Cox, R. Diver, L. Dossus, H.S. Feigelson, C. Haiman, G. Hallmans, R.B. Hayes, B.E. Henderson, R.N. Hoover, D.J. Hunter, K. Khaw, L.N. Kolonel, P. Kraft, E. Lund, L. Le Marchand, P.H. Peeters, E. Riboli, D. Stram, G. Thomas, M.J. Thun, R. Tumino, D. Trichopoulos, U. Vogel, W.C. Willett, M. Yeager, R. Ziegler, S.E. Hankinson, and R. Kaaks, Comprehensive analysis of hormone and genetic variation in 36 genes related to steroid hormone metabolism in pre- and postmenopausal women from the breast and prostate cancer cohort consortium (BPC3). J Clin Endocrinol Metab, 2011. 96(2): p. E360-7.

167. Monsees, G.M., P. Kraft, S.J. Chanock, D.J. Hunter, and J. Han, Comprehensive screen of genetic variation in DNA repair pathway genes and postmenopausal breast cancer risk. Breast Cancer Res Treat, 2011. 125(1): p. 207-14.

168. Painter, J.N., C.A. Anderson, D.R. Nyholt, S. Macgregor, J. Lin, S.H. Lee, A. Lambert, Z.Z. Zhao, F. Roseman, Q. Guo, S.D. Gordon, L. Wallace, A.K. Henders, P.M. Visscher, P. Kraft, N.G. Martin, A.P. Morris, S.A. Treloar, S.H. Kennedy, S.A. Missmer, G.W. Montgomery, and K.T. Zondervan, Genome-wide association study identifies a locus at 7p15.2 associated with endometriosis. Nat Genet, 2011. 43(1): p. 51-4.

169. Nan, H., M. Xu, J. Zhang, M. Zhang, P. Kraft, A.A. Qureshi, C. Chen, Q. Guo, F.B. Hu, E.B. Rimm, G. Curhan, Y. Song, C.I. Amos, L.E. Wang, J.E. Lee, Q. Wei, D.J. Hunter, and J. Han, Genome-wide association study identifies nidogen 1 (NID1) as a susceptibility locus to cutaneous nevi and melanoma risk. Hum Mol Genet, 2011. 20(13): p. 2673-9.

170. Sinnott, J.A. and P. Kraft, Artifact due to differential error when cases and controls are imputed from different platforms. Hum Genet, 2012. 131(1):111-119.

171. Chung, C.C., J. Ciampa, M. Yeager, K.B. Jacobs, S.I. Berndt, R.B. Hayes, J. Gonzalez-Bosquet, P. Kraft, S. Wacholder, N. Orr, K. Yu, A. Hutchinson, J. Boland, Q. Chen, H.S. Feigelson, M.J. Thun, W.R. Diver, D. Albanes, J. Virtamo, S. Weinstein, F.R. Schumacher, G. Cancel-Tassin, O. Cussenot, A. Valeri, G.L. Andriole, E.D. Crawford, C.A. Haiman, B.E. Henderson, L. Kolonel, L. Le Marchand, A. Siddiq, E. Riboli, T.J. Key, R. Kaaks, W.B. Isaacs, S.D. Isaacs, H. Gronberg, F. Wiklund, J. Xu, L.J. Vatten, K. Hveem, I. Njolstad, D.S. Gerhard, M. Tucker, R.N. Hoover, J.F. Fraumeni, Jr., D.J. Hunter, G. Thomas, N. Chatterjee, and S.J. Chanock, Fine mapping of a region of chromosome 11q13 reveals multiple independent loci associated with risk of prostate cancer. Hum Mol Genet, 2011. 20(14): p. 2869-78.

172. Penney, K.L., F.R. Schumacher, P. Kraft, L.A. Mucci, H.D. Sesso, J. Ma, Y. Niu, J.K. Cheong, D.J. Hunter, M.J. Stampfer, and S.I. Hsu, Association of KLK3 (PSA) genetic variants with prostate cancer risk and PSA levels. Carcinogenesis, 2011. 32(6): p. 853-9.

173. Penney, K.L., J.A. Sinnott, K. Fall, Y. Pawitan, Y. Hoshida, P. Kraft, J.R. Stark, M. Fiorentino, S. Perner, S. Finn, S. Calza, R. Flavin, M.L. Freedman, S. Setlur, H.D. Sesso, S.O. Andersson, N. Martin, P.W. Kantoff, J.E. Johansson, H.O. Adami, M.A. Rubin, M. Loda, T.R. Golub, O. Andren, M.J. Stampfer, and L.A. Mucci, mRNA expression signature of Gleason grade predicts lethal prostate cancer. J Clin Oncol, 2011. 29(17): p. 2391-6.

174. Paulus, J.K., W. Zhou, P. Kraft, B.E. Johnson, X. Lin, and D.C. Christiani, Haplotypes of estrogen receptor-beta and risk of non-small cell lung cancer in women. Lung Cancer, 2011. 71(3): p. 258-63.

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175. Lin, W., A.A. Qureshi, P. Kraft, H. Nan, Q. Guo, F.B. Hu, M.K. Jensen, and J. Han, ASIP genetic variants and the number of non-melanoma skin cancers. Cancer Causes Control, 2011. 22(3): p. 495-501.

176. Tchetgen Tchetgen, E.J. and P. Kraft, On the robustness of tests of genetic associations incorporating gene-environment interaction when the environmental exposure is misspecified. Epidemiology, 2011. 22(2): p. 257-61.

177. Lindstrom, S., C.M. Vachon, J. Li, J. Varghese, D. Thompson, R. Warren, J. Brown, J. Leyland, T. Audley, N.J. Wareham, R.J. Loos, A.D. Paterson, J. Rommens, D. Waggott, L.J. Martin, C.G. Scott, V.S. Pankratz, S.E. Hankinson, A. Hazra, D.J. Hunter, J.L. Hopper, M.C. Southey, S.J. Chanock, S. Silva Idos, J. Liu, L. Eriksson, F.J. Couch, J. Stone, C. Apicella, K. Czene, P. Kraft, P. Hall, D.F. Easton, N.F. Boyd, and R.M. Tamimi, Common variants in ZNF365 are associated with both mammographic density and breast cancer risk. Nat Genet, 2011. 43(3): p. 185-7.

178. Khalili, H., B.M. Wolpin, E.S. Huang, E.L. Giovannucci, P. Kraft, C.S. Fuchs, and A.T. Chan, ABO blood group and risk of colorectal cancer. Cancer Epidemiol Biomarkers Prev, 2011. 20(5): p. 1017-20.

179. Ciampa, J., M. Yeager, L. Amundadottir, K. Jacobs, P. Kraft, C. Chung, S. Wacholder, K. Yu, W. Wheeler, M.J. Thun, W.R. Divers, S. Gapstur, D. Albanes, J. Virtamo, S. Weinstein, E. Giovannucci, W.C. Willett, G. Cancel-Tassin, O. Cussenot, A. Valeri, D. Hunter, R. Hoover, G. Thomas, S. Chanock, and N. Chatterjee, Large-scale exploration of gene-gene interactions in prostate cancer using a multistage genome-wide association study. Cancer Res, 2011. 71(9): p. 3287-95.

180. Milne, R.L., E.L. Goode, M. Garcia-Closas, F.J. Couch, G. Severi, R. Hein, Z. Fredericksen, N. Malats, M.P. Zamora, J.I. Perez, J. Benitez, T. Dork, P. Schurmann, J.H. Karstens, P. Hillemanns, A. Cox, I.W. Brock, G. Elliot, S.S. Cross, S. Seal, C. Turnbull, A. Renwick, N. Rahman, C.Y. Shen, J.C. Yu, C.S. Huang, M.F. Hou, B.G. Nordestgaard, S.E. Bojesen, C. Lanng, G.G. Alnaes, V. Kristensen, A.L. Borrensen-Dale, J.L. Hopper, G.S. Dite, C. Apicella, M.C. Southey, D. Lambrechts, B.T. Yesilyurt, G. Floris, K. Leunen, S. Sangrajrang, V. Gaborieau, P. Brennan, J. McKay, J. Chang-Claude, S. Wang-Gohrke, P. Radice, P. Peterlongo, S. Manoukian, M. Barile, G.G. Giles, L. Baglietto, E.M. John, A. Miron, S.J. Chanock, J. Lissowska, M.E. Sherman, J.D. Figueroa, N.V. Bogdanova, N.N. Antonenkova, I.V. Zalutsky, Y.I. Rogov, P.A. Fasching, C.M. Bayer, A.B. Ekici, M.W. Beckmann, H. Brenner, H. Muller, V. Arndt, C. Stegmaier, I.L. Andrulis, J.A. Knight, G. Glendon, A.M. Mulligan, A. Mannermaa, V. Kataja, V.M. Kosma, J.M. Hartikainen, A. Meindl, J. Heil, C.R. Bartram, R.K. Schmutzler, G.D. Thomas, R.N. Hoover, O. Fletcher, L.J. Gibson, I. Dos Santos Silva, J. Peto, S. Nickels, D. Flesch-Janys, H. Anton-Culver, A. Ziogas, E. Sawyer, I. Tomlinson, M. Kerin, N. Miller, M.K. Schmidt, A. Broeks, L.J. Van 't Veer, R.A. Tollenaar, P.D. Pharoah, A.M. Dunning, K.A. Pooley, F. Marme, A. Schneeweiss, C. Sohn, B. Burwinkel, A. Jakubowska, J. Lubinski, K. Jaworska, K. Durda, D. Kang, K.Y. Yoo, D.Y. Noh, S.H. Ahn, D.J. Hunter, S.E. Hankinson, P. Kraft, S. Lindstrom, X. Chen, J. Beesley, U. Hamann, V. Harth, C. Justenhoven, R. Winqvist, K. Pylkas, A. Jukkola-Vuorinen, M. Grip, M. Hooning, A. Hollestelle, R.A. Oldenburg, M. Tilanus-Linthorst, E. Khusnutdinova, M. Bermisheva, D. Prokofieva, A. Farahtdinova, J.E. Olson, X. Wang, M.K. Humphreys, Q. Wang, G. Chenevix-Trench and D.F. Easton, Confirmation of 5p12 As a Susceptibility Locus for Progesterone-Receptor-Positive, Lower Grade Breast Cancer. Cancer Epidemiol Biomarkers Prev, 2011. 20(10): p. 2222-2231.

181. Major, J.M., K. Yu, W. Wheeler, H. Zhang, M.C. Cornelis, M.E. Wright, M. Yeager, K. Snyder, S.J. Weinstein, A. Mondul, H. Eliassen, M. Purdue, A. Hazra, C.A. McCarty, S. Hendrickson, J. Virtamo, D. Hunter, S. Chanock, P. Kraft, and D. Albanes, Genome-wide association study identifies common variants associated with circulating vitamin E levels. Hum Mol Genet, 2011. 20(19): p. 3876-83.

182. Schumacher, F.R., S.I. Berndt, A. Siddiq, K.B. Jacobs, Z. Wang, S. Lindstrom, V.L. Stevens, C. Chen, A.M. Mondul, R.C. Travis, D.O. Stram, R.A. Eeles, D.F. Easton, G. Giles, J.L. Hopper, D.E. Neal, F.C. Hamdy, J.L. Donovan, K. Muir, A.A. Al Olama, Z. Kote-Jarai, M. Guy, G. Severi, H. Gronberg, W.B. Isaacs, R. Karlsson, F. Wiklund, J. Xu, N.E. Allen, G.L. Andriole, A. Barricarte, H. Boeing, H. Bas Bueno-de-Mesquita, E.D. Crawford, W.R. Diver, C.A. Gonzalez, J.M. Gaziano, E.L. Giovannucci, M. Johansson, L. Le Marchand, J. Ma, S. Sieri, P. Stattin, M.J. Stampfer, A. Tjonneland, P. Vineis, J.

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Virtamo, U. Vogel, S.J. Weinstein, M. Yeager, M.J. Thun, L.N. Kolonel, B.E. Henderson, D. Albanes, R.B. Hayes, H. Spencer Feigelson, E. Riboli, D.J. Hunter, S.J. Chanock, C.A. Haiman, and P. Kraft, Genome-wide association study identifies new prostate cancer susceptibility loci. Hum Mol Genet, 2011. 20(19): p. 3867-75.

183. Kasperzyk, J.L., E.T. Chang, B.M. Birmann, P. Kraft, T. Zheng, and N.E. Mueller, Nutrients and Genetic Variation Involved in One-Carbon Metabolism and Hodgkin Lymphoma Risk: A Population-based Case-Control Study. Am J Epidemiol, 2011. 174(7): p. 816-27.

184. Simon, K.C., K.L. Munger, P. Kraft, D.J. Hunter, P.L. De Jager, and A. Ascherio, Genetic predictors of 25-hydroxyvitamin D levels and risk of multiple sclerosis. J Neurol, 2011. 258(9): p. 1676-82.

185. Machiela, M.J., C.Y. Chen, C. Chen, S.J. Chanock, D.J. Hunter, and P. Kraft, Evaluation of polygenic risk scores for predicting breast and prostate cancer risk. Genet Epidemiol, 2011. 35(6): p. 506-14.

186. Nan, H., M. Xu, P. Kraft, A.A. Qureshi, C. Chen, Q. Guo, F.B. Hu, G. Curhan, C.I. Amos, L.E. Wang, J.E. Lee, Q. Wei, D.J. Hunter, and J. Han, Genome-wide association study identifies novel alleles associated with risk of cutaneous basal cell carcinoma and squamous cell carcinoma. Hum Mol Genet, 2011. 20(18): p. 3718-24.

187. Zhu, H., N. Shyh-Chang, AV Segre, G. Shinoda, SP Shah, WS Einhorn, A. Takeuchi, JM Engreitz, JP Hagan, MG Kharas, A. Urbach, JE Thornton, R. Triboulet, RI Gregory, DIAGRAM Consortium, MAGIC Investigators, D. Altshuler, and GQ Daley, The Lin28/let-7 axis regulates glucose metabolism. Cell, 2011. 147(1):81-94.

188. Strawbridge RJ, J. Dupuis, I. Prokopenko, A. Barker, E. Ahlqvist, D. Rybin, JR Petrie, ME Travers, N. Bouatia-Naji, AS Dimas, A. Nica, E. Wheeler, H. Chen, BF Voight, J. Taneera, S. Kanoni, JF Peden, F. Turrini, S. Gustafsson, C. Zabena, P. Almgren, DJ Barker, D. Barnes, EM Dennison, JG Eriksson, P. Eriksson, E. Eury, L. Folkersen, CS Fox, TM Frayling, A. Goel, HF Gu, M. Horikoshi, B. Isomaa, AU Jackson, KA Jameson, E. Kajantie, J. Kerr-Conte, T. Kuulasmaa, J. Kuusisto, RJ Loos, J. Luan, K. Makrilakis, AK Manning, MT Martinez-Larrad, N. Narisu, M. Nastase Mannila, J. Ohrvik, C. Osmond, L. Pascoe, F. Payne, AA Sayer, B. Sennblad, A. Silveira, A. Stancakova, K. Stirrups, AJ Swift, AC Syvänen, T. Tuomi, FM van 't Hooft, M. Walker, MN Weedon, W. Xie, B. Zethelius, DIAGRAM Consortium, GIANT Consortium, MuTHER Consortium, CARDIoGRAM Consortium, C4D Consortium, H. Ongen, A. Mälarstig, JC Hopewell, D. Saleheen, J. Chambers, S. Parish, J. Danesh, J. Kooner, CG Ostenson, L. Lind, CC Cooper, M. Serrano-Rios, E. Ferrannini, TJ Forsen, R. Clarke, MG Franzosi, U. Seedorf, H. Watkins, P. Froguel, P. Johnson, P. Deloukas, FS Collins, M. Laakso, ET Dermitzakis, M. Boehnke, MI McCarthy, NJ Wareham, L. Groop, F. Pattou, AL Gloyn, GV Dedoussis, V. Lyssenko, JB Meigs, I. Barroso, RM Watanabe, E. Ingelsson, C. Langenberg, A. Hamsten, and JC Florez, Genome-wide association identifies nine common variants associated with fasting proinsulin and provides new insights into the pathophysiology of type 2 diabetes. Diabetes, 2011. 60(10):2624-34.

189. Chambers JC, W. Zhang, J. Sehmi, X. Li, MN Wass, P. Van der Harst, H. Holm, S. Sanna, M. Kavousi, SE Baumeister, LJ Coin, G. Deng, C. Gieger, NL Heard-Costa, JJ Hottenga, B. Kühnel, V. Kumar, V. Lagou, L. Liang, J. Luan, PM Vidal, I. Mateo Leach, PF O'Reilly, JF Peden, N. Rahmioglu, P. Soininen, EK Speliotes, X. Yuan, G. Thorleifsson, BZ Alizadeh, LD Atwood, IB Borecki, MJ Brown, P. Charoen, F. Cucca, D. Das, EJ de Geus, AL Dixon, A. Döring, G. Ehret, GI Eyjolfsson, M. Farrall, NG Forouhi, N. Friedrich, W. Goessling, DF Gudbjartsson, TB Harris, AL Hartikainen, S. Heath, GM Hirschfield, A. Hofman, G. Homuth, E. Hyppönen, HL Janssen, T. Johnson, AJ Kangas, IP Kema, JP Kühn, S. Lai, M. Lathrop, MM Lerch, Y. Li, TJ Liang, JP Lin, RJ Loos, NG Martin, MF Moffatt, GW Montgomery, PB Munroe, K. Musunuru, Y. Nakamura, CJ O'Donnell, I. Olafsson, BW Penninx, A. Pouta, BP Prins, I. Prokopenko, R. Puls, A. Ruokonen, MJ Savolainen, D. Schlessinger, JN Schouten, U. Seedorf, S. Sen-Chowdhry, KA Siminovitch, JH Smit, TD Spector, W. Tan, TM Teslovich, T. Tukiainen, AG Uitterlinden, MM Van der Klauw, RS Vasan, C. Wallace, H. Wallaschofski, HE Wichmann, G. Willemsen, P. Würtz, C. Xu, LM Yerges-Armstrong, Alcohol Genome-wide Association (AlcGen) Consortium, Diabetes Genetics Replication and Meta-analyses (DIAGRAM+) Study, Genetic Investigation of Anthropometric Traits (GIANT) Consortium, Global Lipids Genetics Consortium,

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Genetics of Liver Disease (GOLD) Consortium, International Consortium for Blood Pressure (ICBP-GWAS), Meta-analyses of Glucose and Insulin-Related Traits Consortium (MAGIC), GR Abecasis, KR Ahmadi, DI Boomsma, M. Caulfield, WO Cookson, CM van Duijn, P. Froguel, K. Matsuda, MI McCarthy, C. Meisinger, V. Mooser, KH Pietiläinen, G. Schumann, H. Snieder, MJ Sternberg, RP Stolk, HC Thomas, U. Thorsteinsdottir, M. Uda, G. Waeber, NJ Wareham, DM Waterworth, H. Watkins, JB Whitfield, JC Witteman, BH Wolffenbuttel, CS Fox, M. Ala-Korpela, K. Stefansson, P. Vollenweider, H. Völzke, EE Schadt, J. Scott, MR Järvelin, P. Elliott, and JS Kooner, Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma. Nat Genet, 2011. 43(11):1131-8.

190. Haiman, CA, GK Chen, CM Vachon, F. Canzian, A. Dunning, RC Millikan, X. Wang, F. Ademuyiwa, S. Ahmed, CB Ambrosone, L. Baglietto, R. Balleine, EV Bandera, MW Beckmann, CD Berg, L. Bernstein, C. Blomqvist, WJ Blot, H. Brauch, JE Buring, LA Carey, JE Carpenter, J. Chang-Claude, SJ Chanock, DI Chasman, CL Clarke, A. Cox, SS Cross, SL Deming, RB Diasio, AM Dimopoulos, WR Driver, T. Dünnebier, L. Durcan, D. Eccles, CK Edlund, AB Ekici, PA Fasching, HS Feigelson, D. Flesch-Janys, F. Fostira, A. Försti, G. Fountzilas, SM Gerty, GENICA Consortium, GG Giles, AK Godwin, P. Goodfellow, N. Graham, D. Greco, U. Hamann, SE Hankinson, A. Hartmann, R. Hein, J. Heinz, A. Holbrook, RN Hoover, JJ Hu, DJ Hunter, SA Ingles, A. Irwanto, J. Ivanovich, EM John, N. Johnson, A. Jukkola-Vuorinen, R. Kaaks, YD Ko, LN Kolonel, I. Konstantopoulou, VM Kosma, S. Kulkarni, D. Lambrechts, AM Lee, L. Le Marchand, T. Lesnick, J. Liu, S. Lindstrom, A. Mannermaa, S. Margolin, NG Martin, P. Miron, GW Montgomery, H. Nevanlinna, S. Nickels, S. Nyante, C. Olswold, J. Palmer, H. Pathak, D. Pectasides, CM Perou, J. Peto, PD Pharoah, LC Pooler, MF Press, K. Pylkäs, TR Rebbeck, JL Rodriguez-Gil, L. Rosenberg, E. Ross, T. Rüdiger, ID Silva, E. Sawyer, MK Schmidt, R. Schulz-Wendtland, F. Schumacher, G. Severi, X. Sheng, LB Signorello, HP Sinn, KN Stevens, MC Southey, WJ Tapper, I. Tomlinson, FB Hogervorst, E. Wauters, J. Weaver, H. Wildiers, R. Winqvist, DV Berg, P. Wan, LY Xia, D. Yannoukakos, W. Zheng, RG Ziegler, A. Siddiq, SL Slager, DO Stram, D. Easton, P. Kraft, BE Henderson, and FJ Couch, A common variant at the TERT-CLPTM1L locus is associated with estrogen receptor-negative breast cancer. Nat Genet, 2011. 43(12):1210-1214.

191. Mondul AM, K. Yu, W. Wheeler, H. Zhang, SJ Weinstein, JM Major, MC Cornelis, S. Männistö, A. Hazra, AW Hsing, KB Jacobs, H. Eliassen, T. Tanaka, DJ Reding, S. Hendrickson, L. Ferrucci, J. Virtamo, DJ Hunter, SJ Chanock, P. Kraft, and D. Albanes, Genome-wide association study of circulating retinol levels. Hum Mol Genet, 2011. 20(23):4724-31.

192. Cox DG, L. Dostal, DJ Hunter, L. Le Marchand, R. Hoover, RG Ziegler, MJ Thun; for the Breast and Prostate Cancer Cohort Consortium, N-Acetyltransferase 2 Polymorphisms, Tobacco Smoking, and Breast Cancer Risk in the Breast and Prostate Cancer Cohort Consortium. Am J Epidemiol, 2011. 174(11):1316-1322.

193. Gu F., P. Kraft, M. Rice, and KB Michels, Leptin and leptin receptor genes in relation to premenopausal breast cancer incidence and grade in Caucasian women. Breast Cancer Res Treat, 2012. 131(1):17-25.

194. Cornelis MC, EJ Tchetgen Tchetgen, L. Liang, L. Qi, N. Chatterjee, FB Hu, and P. Kraft, Gene-environment interactions in genome-wide association studies: A comparative study of tests applied to empirical studies of type 2 diabetes. Am J Epidemiol, 2012 Feb 1;175(3):191-202

195. Lindström S., FR Schumacher, D. Campa, D. Albanes, G. Andriole, SI Berndt, HB Bueno-de-Mesquita, SJ Chanock, WR Diver, JM Ganziano, SM Gapstur, E. Giovannucci, CA Haiman, B. Henderson, DJ Hunter, M. Johansson, LN Kolonel, L. Le Marchand, J. Ma, M. Stampfer, VL Stevens, D. Trichopoulos, J. Virtamo, WC Willett, M. Yeager, AW Hsing, and P. Kraft, Replication of Five Prostate Cancer Loci Identified in an Asian Population--Results from the NCI Breast and Prostate Cancer Cohort Consortium (BPC3). Cancer Epidemiol Biomarkers Prev, 2012. 21(1): 212-216.

196. Wolpin BM, K. Ng, Y. Bao, P. Kraft, MJ Stampfer, DS Michaud, J. Ma, JE Buring, HD Sesso, IM Lee, N. Rifai, BB Cochrane, J. Wactawski-Wende, RT Chlebowski, WC Willett, JE Manson, EL

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Giovannucci, and CS Fuchs, Plasma 25-hydroxyvitamin D and risk of pancreatic cancer. Cancer Epidemiol Biomarkers Prev, 2012. 21(1):82-91.

197. Shui, I.M., J.R. Stark, K.L. Penney, F.R. Schumacher, M.M. Epstein, M.J. Pitt, M.J. Stampfer, R.M. Tamimi, S. Lindstrom, H.D. Sesso, K. Fall, J. Ma, P. Kraft, E. Giovannucci, and L.A. Mucci, Genetic variation in the toll-like receptor 4 and prostate cancer incidence and mortality. Prostate, 2012. 72(2):209-216.

198. Peters, U., C.M. Hutter, L. Hsu, F.R. Schumacher, D.V. Conti, C.S. Carlson, C.K. Edlund, R.W. Haile, S. Gallinger, B.W. Zanke, M. Lemire, J. Rangrej, R. Vijayaraghavan, A.T. Chan, A. Hazra, D.J. Hunter, J. Ma, C.S. Fuchs, E.L. Giovannucci, P. Kraft, Y. Liu, L. Chen, S. Jiao, K.W. Makar, D. Taverna, S.B. Gruber, G. Rennert, V. Moreno, C.M. Ulrich, M.O. Woods, R.C. Green, P.S. Parfrey, R.L. Prentice, C. Kooperberg, R.D. Jackson, A.Z. Lacroix, B.J. Caan, R.B. Hayes, S.I. Berndt, S.J. Chanock, R.E. Schoen, J. Chang-Claude, M. Hoffmeister, H. Brenner, B. Frank, S. Bezieau, S. Kury, M.L. Slattery, J.L. Hopper, M.A. Jenkins, L. Le Marchand, N.M. Lindor, P.A. Newcomb, D. Seminara, T.J. Hudson, D.J. Duggan, J.D. Potter, and G. Casey, Meta-analysis of new genome-wide association studies of colorectal cancer risk. Hum Genet, 2012. 131(2):217-234.

199. Shu, XO, J. Long, W. Lu, C. Li, WY Chen, R. Delahanty, J. Cheng, H. Cai, Y. Zheng, J. Shi, K. Gu, WJ Wang, P. Kraft, YT Gao, Q. Cai, and W. Zheng, Novel Genetic Markers of Breast Cancer Survival Identified by a Genome-Wide Association Study. Cancer Res, 2012. 72(5):1182-1189.

200. Lindström, S., F. Schumacher, DG Cox, RC Travis, D. Albanes, NE Allen, GL Andriole, SI Berndt, H. Boeing, HB Bueno-de-Mesquita, D. Crawford, WR Diver, JM Gaziano, GG Giles, EL Giovannucci, C. Gonzales, B. Henderson, DJ Hunter, M. Johansson , LN Kolonel, J. Ma, L. Le Marchand, V. Pala, MJ Stampfer, DO Stram, M. Thun, A. Tjonneland, D. Trichopoulos, J. Virtamo, SJ Weinstein, WC Willett, M. Yeager, RB Hayes, G. Severi, C. Haiman, SJ Chanock, and P. Kraft , Common genetic variants in prostate cancer risk prediction - Results from the NCI Breast and Prostate Cancer Cohort Consortium (BPC3). Cancer Epidemiol Biomarkers Prev, 2012. 21(3):437-444.

201. Lee, P., Y.P. Fu, J.D. Figueroa, L. Prokunina-Olsson, J. Gonzalez-Bosquet, P. Kraft, Z. Wang, K.B. Jacobs, M. Yeager, M.J. Horner, S.E. Hankinson, A. Hutchinson, N. Chatterjee, M. Garcia-Closas, R.G. Ziegler, C.D. Berg, S.S. Buys, C.A. McCarty, H.S. Feigelson, M.J. Thun, R. Diver, R. Prentice, R. Jackson, C. Kooperberg, R. Chlebowski, J. Lissowska, B. Peplonska, L.A. Brinton, M. Tucker, J.F. Fraumeni, Jr., R.N. Hoover, G. Thomas, D.J. Hunter, and S.J. Chanock, Fine mapping of 14q24.1 breast cancer susceptibility locus. Hum Genet, 2012. 131(3):479-490

202. Zhang, M., L. Liang, N. Morar, AL Dixon, GM Lathrop, J. Ding, MF Moffatt, WO Cookson, P.Kraft, AA Qureshi, and J. Han, Integrating pathway analysis and genetics of gene expression for genome-wide association study of basal cell carcinoma. Hum Genet, 2012. 131(4):615-623.

203. Monsees, GM, P. Kraft, SE Hankinson, DJ Hunter, and ES Schernhammer, Circadian genes and breast cancer susceptibility in rotating shift workers. Int J Cancer, 2012. 131(11):2547-2552.

204. Palmer, ND, CW McDonough, PJ Hicks, BH Roh, MR Wing, SS An, JM Hester, JN Cooke, MA Bostrom, ME Rudock, ME Talbert, JP Lewis; DIAGRAM Consortium; MAGIC Investigators, A. Ferrara, L. Lu, JT Ziegler, MM Sale, J. Divers, D. Shriner, A. Adeyemo, CN Rotimi, MC Ng, CD Langefeld, BI Freedman, DW Bowden, BF Voight, LJ Scott, V. Steinthorsdottir, AP Morris, C. Dina, RP Welch, E. Zeggini, C. Huth, YS Aulchenko, G. Thorleifsson, LJ McCulloch, T. Ferreira, H. Grallert, N. Amin, G. Wu, CJ Willer, S. Raychaudhuri, SA McCarroll, C. Langenberg, OM Hofmann, J. Dupuis, L. Qi, AV Segrè, M. van Hoek, P. Navarro, K. Ardlie, B. Balkau, R. Benediktsson, AJ Bennett, R. Blagieva, E. Boerwinkle, LL Bonnycastle, KB Boström, B. Bravenboer, S. Bumpstead, NP Burtt, G. Charpentier, PS Chines, M. Cornelis, DJ Couper, G. Crawford, AS Doney, KS Elliott, AL Elliott, MR Erdos, CS Fox, CS Franklin, M. Ganser, C. Gieger, N. Grarup, T. Green, S. Griffin, CJ Groves, C. Guiducci, S. Hadjadj, N. Hassanali, C. Herder, B. Isomaa, AU Jackson, PR Johnson, T. Jørgensen, WH Kao, N. Klopp, A. Kong, P. Kraft, J. Kuusisto, T. Lauritzen, M. Li, A. Lieverse, CM Lindgren, V. Lyssenko, M. Marre, T. Meitinger, K. Midthjell,MA Morken, N. Narisu, P. Nilsson, KR Owen, F. Payne, JR Perry, AK Petersen, C. Platou, C. Proença, I. Prokopenko, W. Rathmann, NW Rayner, NR

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Robertson, G. Rocheleau, M. Roden, MJ Sampson, R. Saxena, BM Shields, P. Shrader, G. Sigurdsson, T. Sparsø, K. Strassburger, HM Stringham, Q. Sun, AJ Swift, B. Thorand, J. Tichet, T. Tuomi, RM van Dam, TW van Haeften, T. van Herpt, JV van Vliet-Ostaptchouk, GB Walters, MN Weedon, C. Wijmenga, J. Witteman, RN Bergman, S. Cauchi, FS Collins, AL Gloyn, U. Gyllensten, T. Hansen, WA Hide, GA Hitman, A. Hofman, DJ Hunter, K. Hveem, M. Laakso, KL Mohlke, AD Morris, CN Palmer, PP Pramstaller, I. Rudan, E. Sijbrands, LD Stein, J. Tuomilehto, A. Uitterlinden, M. Walker, NJ Wareham, RM Watanabe, GR Abecasis, BO Boehm, H. Campbell, MJ Daly, AT Hattersley, FB Hu, JB Meigs, JS Pankow, O. Pedersen, HE Wichmann, I. Barroso, JC Florez, TM Frayling, L. Groop, R. Sladek, U. Thorsteinsdottir, JF Wilson, T. Illig, P. Froguel, CM van Duijn, K. Stefansson, D. Altshuler, M. Boehnke, MI McCarthy, N. Soranzo, E. Wheeler, NL Glazer, N. Bouatia-Naji, R. Mägi, J. Randall, T. Johnson, P. Elliott, D. Rybin, P. Henneman, A. Dehghan, JJ Hottenga, K. Song, A. Goel, JM Egan, T. Lajunen, A. Doney, S. Kanoni, C. Cavalcanti-Proença, M. Kumari, NJ Timpson, C. Zabena, E. Ingelsson, P. An, J. O'Connell, J. Luan, A. Elliott, SA McCarroll, RM Roccasecca, F. Pattou, P. Sethupathy, Y. Ariyurek, P. Barter, JP Beilby, Y. Ben-Shlomo, S. Bergmann, M. Bochud, A. Bonnefond, K. Borch-Johnsen, Y. Böttcher, E. Brunner, SJ Bumpstead , YD Chen, P. Chines, R. Clarke, LJ Coin, MN Cooper, L. Crisponi, IN Day, EJ de Geus, J. Delplanque, AC Fedson, A. Fischer-Rosinsky, NG Forouhi, R. Frants, MG Franzosi, P. Galan, MO Goodarzi, J. Graessler, S. Grundy, R. Gwilliam, G. Hallmans, N. Hammond, X. Han, AL Hartikainen, C. Hayward, SC Heath, S. Hercberg, AA Hicks, DR Hillman, AD Hingorani, J. Hui, J. Hung, A. Jula, M. Kaakinen, J. Kaprio, YA Kesaniemi, M. Kivimaki, B. Knight, S. Koskinen, P. Kovacs, KO Kyvik, GM Lathrop, DA Lawlor, O. Le Bacquer, C. Lecoeur, Y. Li, R. Mahley, M. Mangino, AK Manning, MT Martínez-Larrad, JB McAteer, R. McPherson, C. Meisinger, D. Melzer, D. Meyre, BD Mitchell, S. Mukherjee, S. Naitza, MJ Neville, BA Oostra, M. Orrù, R. Pakyz, G. Paolisso, C. Pattaro, D. Pearson, JF Peden, NL Pedersen, M. Perola, AF Pfeiffer, I. Pichler, O. Polasek, D. Posthuma , SC Potter, A. Pouta, MA Province, BM Psaty, NW Rayner, K. Rice, S. Ripatti, F. Rivadeneira, O. Rolandsson, A. Sandbaek, M. Sandhu, S. Sanna, AA Sayer, P. Scheet, U. Seedorf, SJ Sharp, B. Shields, EJ Sijbrands, A. Silveira, L. Simpson, A. Singleton, NL Smith, U. Sovio, A. Swift, H. Syddall, AC Syvänen, T. Tanaka, A. Tönjes, AG Uitterlinden, KW van Dijk, D. Varma, S. Visvikis-Siest, V. Vitart, N. Vogelzangs, G. Waeber, PJ Wagner, A. Walley, KL Ward, H. Watkins, SH Wild, G. Willemsen, JC Witteman, JW Yarnell, D. Zelenika, B. Zethelius, G. Zhai, JH Zhao, MC Zillikens, IB Borecki, RJ Loos, P. Meneton, PK Magnusson, DM Nathan, GH Williams, K. Silander, V. Salomaa, GD Smith, SR Bornstein, P. Schwarz, J. Spranger, F. Karpe, AR Shuldiner, C. Cooper, GV Dedoussis, M. Serrano-Ríos, L. Lind, LJ Palmer, PW Franks, S. Ebrahim, M. Marmot, WH Kao, PP Pramstaller, AF Wright, M. Stumvoll, A. Hamsten, TA Buchanan, TT Valle, JI Rotter, DS Siscovick, BW Penninx, DI Boomsma, P. Deloukas, TD Spector, L. Ferrucci, A. Cao, A. Scuteri, D. Schlessinger, M. Uda, A. Ruokonen, MR Jarvelin, DM Waterworth, P. Vollenweider, L. Peltonen, V. Mooser, and R. Sladek, A genome-wide association search for type 2 diabetes genes in African Americans. PLoS One,2012;7(1):e29202.

205. Stolk, L., JR Perry, DI Chasman, C. He, M. Mangino, P. Sulem, M. Barbalic, L. Broer, EM Byrne, F. Ernst, T. Esko, N. Franceschini, DF Gudbjartsson, JJ Hottenga, P. Kraft, PF McArdle, E. Porcu, SY Shin, AV Smith, S. van Wingerden, G. Zhai, WV Zhuang, E. Albrecht, BZ Alizadeh, T. Aspelund, S. Bandinelli, LB Lauc, JS Beckmann, M. Boban, E. Boerwinkle, FJ Broekmans, A. Burri, H. Campbell, SJ Chanock, C. Chen, MC Cornelis, T. Corre,AD Coviello, P. d'Adamo, G. Davies, U. de Faire, EJ de Geus, IJ Deary, GV Dedoussis, P. Deloukas, S. Ebrahim, G. Eiriksdottir, V. Emilsson, JG Eriksson, BC Fauser, L. Ferreli, L. Ferrucci, K. Fischer, AR Folsom, ME Garcia, P. Gasparini, C. Gieger, N. Glazer, DE Grobbee, P. Hall, T. Haller, SE Hankinson, M. Hass, C. Hayward, AC Heath, A. Hofman, E. Ingelsson, AC Janssens, AD Johnson, D. Karasik, SL Kardia, J. Keyzer, DP Kiel, I. Kolcic, Z. Kutalik, J. Lahti, S. Lai, T. Laisk, JS Laven , DA Lawlor, J. Liu, LM Lopez, YV Louwers, PK Magnusson , M. Marongiu, NG Martin, IM Klaric, C. Masciullo, B. McKnight, SE Medland , D. Melzer, V. Mooser, P. Navarro, AB Newman , DR Nyholt, NC Onland-Moret, A. Palotie, G. Paré, AN Parker, NL Pedersen, PH Peeters, G. Pistis, AS Plump, O. Polasek, VJ Pop, BM Psaty, K. Räikkönen, E. Rehnberg, JI Rotter,

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I. Rudan, C. Sala, A. Salumets, A. Scuteri, A. Singleton, JA Smith, H. Snieder, N. Soranzo , SN Stacey, JM Starr, MG Stathopoulou, K. Stirrups, RP Stolk, U. Styrkarsdottir, YV Sun, A. Tenesa, B. Thorand, D. Toniolo, L. Tryggvadottir, K. Tsui, S. Ulivi, RM van Dam, YT van der Schouw, CH van Gils, P. van Nierop, JM Vink, PM Visscher, M. Voorhuis, G. Waeber, H. Wallaschofski, HE Wichmann, E. Widen, CJ Wijnands-van Gent, G. Willemsen, JF Wilson, BH Wolffenbuttel, AF Wright, LM Yerges-Armstrong, T. Zemunik, L. Zgaga, MC Zillikens, M. Zygmunt, TL Study, AM Arnold, DI Boomsma, JE Buring, L. Crisponi, EW Demerath, V. Gudnason, TB Harris, FB Hu, DJ Hunter, LJ Launer, A. Metspalu, GW Montgomery, BA Oostra, PM Ridker, S. Sanna, D. Schlessinger, TD Spector, K. Stefansson, EA Streeten, U. Thorsteinsdottir, M. Uda, AG Uitterlinden, CM van Duijn, H. Völzke, A. Murray, JM Murabito, JA Visser, and KL Lunetta, Meta-analyses identify 13 loci associated with age at menopause and highlight DNA repair and immune pathways. Nat Genet. 2012 Jan 22;44(3):260-8.

206. Du, M., J. Prescott, P. Kraft, J. Han, E. Giovannucci, SE Hankinson, and I. De Vivo, Physical activity, sedentary behavior, and leukocyte telomere length in women. Am J Epidemiol. 2012 Mar 1;175(5):414-22.

207. Hutter, CM, J. Chang-Claude, ML Slattery, BM Pflugeisen, Y. Lin, D. Duggan, H. Nan, M. Lemire, J. Rangrej, JC Figueiredo, S. Jiao, TA Harrison, Y. Liu, LS Chen, DL Stelling, GS Warnick, M. Hoffmeister, S. Küry, CS Fuchs, E. Giovannucci, A. Hazra, P. Kraft, DJ Hunter, S. Gallinger, BW Zanke, H. Brenner, B. Frank, J. Ma, CM Ulrich, E. White, PA Newcomb, C. Kooperberg, AZ Lacroix, RL Prentice, RD Jackson, RE Schoen, SJ Chanock, SI Berndt, RB Hayes, BJ Caan, JD Potter, L. Hsu, S. Bezieau, AT Chan, TJ Hudson, and U. Peters, Characterization of gene-environment interactions for colorectal cancer susceptibility loci. Cancer Res, 2012. 72(8):2036-44.

208. Hartz, SM, S Short, NL Saccone, R Culverhouse, LS Chen, T Schwantes-An, H Coon, Y Han, SH Stephens, J Sun, X Chen, F Ducci, N Dueker, N Franceschini, J Frank, F Geller, D Guðbjartsson, N Hansel, C Jiang, K Keskitalo-Vuokko, J Liu, L Lyytikäinen, M Michel, R Rawal, A Rosenberger, P Scheet, JR Shaffer, A Teumer, JR Thompson, JM Vink, N Vogelzangs, A Wenzlaff, W Wheeler, X Xiangjun , BZ Yang, SH Aggen, A Balmforth, S Baumeister, T Beaty, S Bennett, A Bergen, H Boyd, U Broms, H Campbell, N Chatterjee, J Chen, YC Cheng, S Cichon, D Couper, F Cucca, D Dick, T Foroud, H Furberg, I Giegling, F Gu, A S Hall, J Hällfors, S Han, AM Hartmann, C Hayward, K Heikkilä, JK Hewitt, JJ Hottenga, M Jensen, P Jousilahti, M Kaakinen, S Kittner, B Konte, T Korhonen, MT Landi, T Laatikainen, M Leppert, SM Levy, R Mathias, DW McNeil, S Medland, G Montgomery, T Muley, T Murray, M Nauck, K North, M Pergadia, O Polasek, E Ramos, S Ripatti, A Risch, I Ruczinski, I Rudan, V Salomaa, D Schlessinger, U Styrkársdóttir, A Terracciano, M Uda, G Willemsen, X Wu, G Abecasis, K Barnes, H Bickeböller, E Boerwinkle, DI Boomsma, N Caporaso, J Duan, HJ Edenberg, C Francks, PV Gejman, J Gelernter, HJ Grabe, H Hops, MR Jarvelin, V Jorma, M Kähönen, KS Kendler, T Lehtimäki, DF Levinson, ML Marazita, J Marchini, M Melbye, B Mitchell, JC Murray, MM Nöthen, BW Penninx, O Raitakari, M Rietschel, D Rujescu, N J Samani , AR Sanders, A Schwartz, S Shete, J Shi, M Spitz, K Stefansson, G Swan, T Thorgeirsson, H Völzke, Q Wei, HE Wichmann, C Amos, N Breslau, D Cannon, M Ehringer, R Grucza, D Hatsukami, A Heath, E Johnson, J Kaprio, P Madden, NG Martin, V Stevens, JA Stitzel, RB Weiss, P Kraft, and LJ Bierut, Increased genetic vulnerability to smoking at CHRNA5 in early-onset smokers, Archives of General Psychiatry (in press).

209. Shui, IM, LA Mucci, P. Kraft, S. Lindstrom, KL Penney, K. Nimptsch, R. Tamimi, E. Platz, MJ Stampfer, and E. Giovannucci, Vitamin D related genetic variation, plasma vitamin D, and risk of lethal prostate cancer:a prospective nested case-control study. J Natl Cancer Inst, 2012. 104(9):690-699.

210. Stahl, EA, D. Wegmann, G. Trynka, J. Gutierrez-Achury, R. Do, BF Voight, P. Kraft, R. Chen, HJ Kallberg, FA Kurreeman, Diabetes Genetics Replication and Meta-analysis Consortium, Myocardial Infarction Genetics Consortium, S. Kathiresan, C. Wijmenga, PK Gregersen, L. Alfredsson, KA Siminovitch, J. Worthington, PIW de Bakker, S. Raychaudhuri, and RM Plenge, Bayesian inference analyses of the polygenic architecture of rheumatoid arthritis. Nat Genet, 2012. 44(5):483-489.

211. Machiela, MJ, S. Lindström, N. Allen, CA Haiman , D. Albanes, A. Barricarte, S. Berndt, HB Bueno-de-Mesquita, S. Chanock, WR Diver, S. Gapstur, B. Henderson, E. Jacobs, L. Kolonel, V. Krogh, V.

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Stevens, A. Tjonneland, M. Thun, R. Travis, DJ Hunter, L. LeMarchand, and P. Kraft, Association of Type 2 Diabetes Susceptibility Variants with Advanced Prostate Cancer Risk in the Breast and Prostate Cancer Cohort Consortium. Am J Epidemiol, 2012. 176(12):1121-1129.

212. Aschard, H., J. Chen, M. Cornelis, LB Chibnik, E. Karlson, and P. Kraft, Inclusion of gene-gene and gene-environment interactions unlikely to dramatically improve risk prediction forcomplex diseases. Am J Hum Genet, 2012. 90(6):962-972.

213. Gates, M.A., M. Xu, W.Y. Chen, P. Kraft, S.E. Hankinson, and B.M. Wolpin, ABO blood group and breast cancer incidence and survival. Int J Cancer, 2012. 130(9):2129-2137.

214. Tsilidis, KK, RC Travis, PN Appleby, NE Allen, S. Lindstrom, FR Schumacher, D. Cox, AW Hsing, J. Ma, G. Severi, D. Albanes, J. Virtamo, H. Boeing, HB Bueno-de-Mesquita, M. Johansson, JR Quirós, E. Riboli, A. Siddiq, A. Tjønneland, D. Trichopoulos, R. Tumino, JM Gaziano, E. Giovannucci, DJ Hunter, P. Kraft, MJ Stampfer, GG Giles, GL Andriole, SI Berndt, SJ Chanock, RB Hayes, and TJ Key, Interactions between genome-wide significant genetic variants and circulating concentrations of insulin-like growth factor 1, sex hormones, and binding proteins in relation to prostate cancer risk in the National Cancer Institute Breast and Prostate Cancer Cohort Consortium. Am J Epidemiol, 2012. 175(9):926-935.

215. Jacobs, KB, M. Yeager, W. Zhou, S. Wacholder, Z. Wang, B. Rodriguez-Santiago, A. Hutchinson, X. Deng, C. Liu, MJ Horner, M. Cullen, CG Epstein, L. Burdett, MC Dean, N. Chatterjee, J. Sampson, CC Chung, J. Kovaks, SM Gapstur, VL Stevens, LT Teras, MM Gaudet, D. Albanes, SJ Weinstein, J. Virtamo, PR Taylor, ND Freedman, CC Abnet, AM Goldstein, N. Hu, K. Yu, JM Yuan, L. Liao, T. Ding, YL Qiao, YT Gao, WP Koh, YB Xiang, ZZ Tang, JH Fan, MC Aldrich, C. Amos, WJ Blot, CH Bock, EM Gillanders, CC Harris, CA Haiman, BE Henderson, LN Kolonel, L. Le Marchand, LH McNeill, BA Rybicki, AG Schwartz, LB Signorello, MR Spitz, JK Wiencke, M. Wrensch, X. Wu, KA Zanetti, RG Ziegler, JD Figueroa, M. Garcia-Closas, N. Malats, G. Marenne, L. Prokunina-Olsson, D. Baris, M. Schwenn, A. Johnson, MT Landi, L. Goldin, D. Consonni, PA Bertazzi, M. Rotunno, P. Rajaraman, U. Andersson, LE Freeman, CD Berg, JE Buring, MA Butler, T. Carreon, M. Feychting, A. Ahlbom, JM Gaziano, GG Giles, G. Hallmans, SE Hankinson, P. Hartge, R. Henriksson, PD Inskip, C. Johansen, A. Landgren, R. McKean-Cowdin, DS Michaud, BS Melin, U. Peters, AM Ruder, HD Sesso, G. Severi, XO Shu, K. Visvanathan, E. White, A. Wolk, A. Zeleniuch-Jacquotte, W. Zheng, DT Silverman, M. Kogevinas, JR Gonzalez, O. Villa, D. Li, EJ Duell, HA Risch, SH Olson, C. Kooperberg, BM Wolpin, L. Jiao, M. Hassan, W. Wheeler, AA Arslan, HB Bueno-de-Mesquita, CS Fuchs, S. Gallinger, MD Gross, EA Holly, AP Klein, A. Lacroix, MT Mandelson, G. Petersen, MC Boutron-Ruault, PM Bracci, F. Canzian, K. Chang, M. Cotterchio, EL Giovannucci, M. Goggins, JA Bolton, M. Jenab, KT Khaw, V. Krogh, RC Kurtz, RR McWilliams, JB Mendelsohn, KG Rabe, E. Riboli, A. Tjønneland, GS Tobias, D. Trichopoulos, JW Elena, H. Yu, L. Amundadottir, RZ Stolzenberg-Solomon, P. Kraft, F. Schumacher, D. Stram, SA Savage, L. Mirabello, IL Andrulis, JS Wunder, AP García, L. Sierrasesúmaga, DA Barkauskas, RG Gorlick, M. Purdue, WH Chow, LE Moore, KL Schwartz, FG Davis, AW Hsing, SI Berndt, A. Black, N. Wentzensen, LA Brinton, J. Lissowska, B. Peplonska, KA McGlynn, MB Cook, BI Graubard, CP Kratz, MH Greene, RL Erickson, DJ Hunter, G. Thomas, RN Hoover, FX Real, JF Fraumeni Jr, NE Caporaso, M. Tucker, N. Rothman, LA Pérez-Jurado, and SJ Chanock, Detectable clonal mosaicism and its relationship to aging and cancer. Nat Genet, 2012. 44(6):651-658.

216. Zaitlen, N., B. Pasaniuc, N. Patterson, S. Pollack, B. Voight, L. Groop, D. Altshuler, BE Henderson, LN Kolonel, LL Marchand, K. Waters, CA Haiman, BE Stranger, ET Dermitzakis, P. Kraft, and AL Price, Analysis of case-control association studies with known risk variants. Bioinformatics, 2012. 28(13):1729-1737.

217. Pierce, BL, L. Tong, P. Kraft, and H. Ahsan, Unidentified Genetic Variants Influence Pancreatic Cancer Risk: An Analysis of Polygenic Susceptibility in the PanScan Study. Genet Epidemiol, 2012. 36(5):517-524.

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218. Dastani, Z., MF Hivert, N. Timpson, JR Perry, X. Yuan, RA Scott, P. Henneman, IM Heid, JR Kizer, LP Lyytikäinen, C. Fuchsberger, T. Tanaka, AP Morris, K. Small, A. Isaacs, M. Beekman, S. Coassin, K. Lohman, L. Qi, S. Kanoni, JS Pankow, HW Uh, Y. Wu, A. Bidulescu, LJ Rasmussen-Torvik, CM Greenwood, M. Ladouceur, J. Grimsby,AK Manning, CT Liu, J. Kooner, VE Mooser, P. Vollenweider, KA Kapur, J. Chambers, NJ Wareham, C. Langenberg, R. Frants, K. Willems-Vandijk, BA Oostra, SM Willems, C. Lamina, TW Winkler, BM Psaty, RP Tracy, J. Brody, I. Chen, J. Viikari, M. Kähönen, PP Pramstaller, DM Evans, B. St Pourcain, N. Sattar, AR Wood, S. Bandinelli, OD Carlson, JM Egan, S. Böhringer, D. van Heemst, L. Kedenko, K. Kristiansson, ML Nuotio, BM Loo, T. Harris, M. Garcia, A. Kanaya, M. Haun, N. Klopp, HE Wichmann, P. Deloukas, E. Katsareli, DJ Couper, BB Duncan, M. Kloppenburg, LS Adair, JB Borja; DIAGRAM+ Consortium; MAGIC Consortium; GLGC Investigators; MuTHER Consortium, JG Wilson, S. Musani, X. Guo, T. Johnson, R. Semple, TM Teslovich, MA Allison, S. Redline, SG Buxbaum, KL Mohlke, I. Meulenbelt, CM Ballantyne, GV Dedoussis, FB Hu, Y. Liu, B. Paulweber, TD Spector, PE Slagboom, L. Ferrucci, A. Jula, M. Perola, O. Raitakari, JC Florez, V. Salomaa, JG Eriksson, TM Frayling, AA Hicks, T. Lehtimäki, GD Smith, DS Siscovick, F. Kronenberg, C. van Duijn, RJ Loos, DM Waterworth, JB Meigs, J. Dupuis, JB Richards, BF Voight, LJ Scott, V. Steinthorsdottir, C. Dina, RP Welch, E. Zeggini, C. Huth, YS Aulchenko, G. Thorleifsson, LJ McCulloch, T. Ferreira, H. Grallert, N. Amin, G. Wu, CJ Willer, S. Raychaudhuri, SA McCarroll, OM Hofmann, AV Segrè, M. van Hoek, P. Navarro, K. Ardlie, B. Balkau, R. Benediktsson, AJ Bennett, R. Blagieva, E. Boerwinkle, LL Bonnycastle, KB Boström, B. Bravenboer, S. Bumpstead, NP Burtt, G. Charpentier, PS Chines, M. Cornelis, G. Crawford, AS Doney, KS Elliott, AL Elliott, MR Erdos, CS Fox, CS Franklin, M. Ganser, C. Gieger, N. Grarup, T. Green, S. Griffin, CJ Groves, C. Guiducci, S. Hadjadj, N. Hassanali, C. Herder, B. Isomaa, AU Jackson, PR Johnson, T. Jørgensen, WH Kao, A. Kong, P. Kraft, J. Kuusisto, T. Lauritzen, M. Li, A. Lieverse, CM Lindgren, V. Lyssenko, M. Marre, T. Meitinger, K. Midthjell, MA Morken, N. Narisu, P. Nilsson, KR Owen, F. Payne, AK Petersen, C. Platou, C. Proença, I. Prokopenko, W. Rathmann, NW Rayner, NR Robertson, G. Rocheleau, M. Roden, MJ Sampson, R. Saxena, BM Shields, P. Shrader, G. Sigurdsson, T. Sparsø, K. Strassburger, HM Stringham, Q. Sun, AJ Swift, B. Thorand, J. Tichet, T. Tuomi, RM van Dam, TW van Haeften, T. van Herpt, JV van Vliet-Ostaptchouk, GB Walters, MN Weedon, C. Wijmenga, J. Witteman, RN Bergman, S. Cauchi, FS Collins, AL Gloyn, U. Gyllensten, T. Hansen, WA Hide, GA Hitman, A. Hofman, DJ Hunter, K. Hveem, M. Laakso, AD Morris, CN Palmer, I. Rudan, E. Sijbrands, LD Stein, J. Tuomilehto, A. Uitterlinden, M. Walker, RM Watanabe, GR Abecasis, BO Boehm, H. Campbell, MJ Daly, AT Hattersley, O. Pedersen, I. Barroso, L. Groop, R. Sladek, U. Thorsteinsdottir, JF Wilson, T. Illig, P. Froguel, CM van Duijn, K. Stefansson, D. Altshuler, M. Boehnke, MI McCarthy, N. Soranzo, E. Wheeler, NL Glazer, N. Bouatia-Naji, R. Mägi, J. Randall, P. Elliott, D. Rybin, A. Dehghan, JJ Hottenga, K. Song, A. Goel, T. Lajunen, A. Doney, C. Cavalcanti-Proença, M. Kumari, NJ Timpson, C. Zabena, E. Ingelsson, P. An, J. O'Connell, J. Luan, A. Elliott, SA McCarroll, RM Roccasecca, F. Pattou, P. Sethupathy, Y. Ariyurek, P. Barter, JP Beilby, Y. Ben-Shlomo, S. Bergmann, M. Bochud, A. Bonnefond, K. Borch-Johnsen, Y. Böttcher, E. Brunner, SJ Bumpstead, YD Chen, P. Chines, R. Clarke, LJ Coin, MN Cooper, L. Crisponi, IN Day, EJ de Geus, J. Delplanque, AC Fedson, A. Fischer-Rosinsky, NG Forouhi, MG Franzosi, P. Galan, MO Goodarzi, J. Graessler, S. Grundy, R. Gwilliam, G. Hallmans, N. Hammond, X. Han, AL Hartikainen, C. Hayward, SC Heath, S. Hercberg, DR Hillman, AD Hingorani, J. Hui, J. Hung, M. Kaakinen, J. Kaprio, YA Kesaniemi, M. Kivimaki, B. Knight, S. Koskinen, P. Kovacs, KO Kyvik, GM Lathrop, DA Lawlor, O. Le Bacquer, C. Lecoeur, Y. Li, R. Mahley, M. Mangino, MT Martínez-Larrad, JB McAteer, R. McPherson, C. Meisinger, D. Melzer, D. Meyre, BD Mitchell, S. Mukherjee, S. Naitza, MJ Neville, M. Orrù, R. Pakyz, G. Paolisso, C. Pattaro, D. Pearson, JF Peden, NL Pedersen, AF Pfeiffer, I. Pichler, O. Polasek, D. Posthuma, SC Potter, A. Pouta, MA Province, NW Rayner, K. Rice, S. Ripatti, F. Rivadeneira, O. Rolandsson, A. Sandbaek, M. Sandhu, S. Sanna, AA Sayer, P. Scheet, U. Seedorf, SJ Sharp, B. Shields, G. Sigurðsson, EJ Sijbrands, A. Silveira, L. Simpson, A. Singleton, NL Smith, U. Sovio, A. Swift, H. Syddall, AC Syvänen, A. Tönjes, AG Uitterlinden, KW van Dijk, D. Varma, S. Visvikis-Siest, V. Vitart, N. Vogelzangs, G.

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219. Li, D., EJ Duell, K. Yu, HA Risch, SH Olson, C. Kooperberg, BM Wolpin, L. Jiao, X. Dong, B. Wheeler, AA Arslan, HB Bueno-de-Mesquita, CS Fuchs, S. Gallinger, M. Gross, P. Hartge, RN Hoover, EA Holly, EJ Jacobs, AP Klein, A. Lacroix, MT Mandelson, G. Petersen, W. Zheng, I. Agalliu, D. Albanes, MC Boutron-Ruault, PM Bracci, JE Buring, F. Canzian, K. Chang, SJ Chanock, M. Cotterchio, JM Gaziano, EL Giovannucci, M. Goggins, G. Hallmans, SE Hankinson, JA Hoffman Bolton, DJ Hunter, A. Hutchinson, KB Jacobs, M. Jenab, KT Khaw, P. Kraft, V. Krogh, RC Kurtz, RR McWilliams, JB Mendelsohn, AV Patel, KG Rabe, E. Riboli, XO Shu, A. Tjønneland, GS Tobias, D. Trichopoulos, J. Virtamo, K. Visvanathan, J. Watters, H. Yu, A. Zeleniuch-Jacquotte, L. Amundadottir, and RZ Stolzenberg-Solomon, Pathway analysis of genome-wide association study data highlights pancreatic development genes as susceptibility factors for pancreatic cancer. Carcinogenesis, 2012. 33(7):1384-1390.

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222. Prescott J, Thompson DJ, Kraft P, Chanock SJ, Audley T, Brown J, Leyland J, Folkerd E, Doody D, Hankinson SE, Hunter DJ, Jacobs KB, Dowsett M, Cox DG, Easton DF, De Vivo I. Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women. PLoS One, 2012. 7(6):e37815.

223. Coviello AD, Haring R, Wellons M, Vaidya D, Lehtimäki T, Keildson S, Lunetta KL, He C, Fornage M, Lagou V, Mangino M, Onland-Moret NC, Chen B, Eriksson J, Garcia M, Liu YM, Koster A, Lohman K, Lyytikäinen LP, Petersen AK, Prescott J, Stolk L, Vandenput L, Wood AR, Zhuang WV, Ruokonen A, Hartikainen AL, Pouta A, Bandinelli S, Biffar R, Brabant G, Cox DG, Chen Y, Cummings S, Ferrucci L, Gunter MJ, Hankinson SE, Martikainen H, Hofman A, Homuth G, Illig T, Jansson JO, Johnson AD, Karasik D, Karlsson M, Kettunen J, Kiel DP, Kraft P, Liu J, Ljunggren O, Lorentzon M, Maggio M, Markus MR, Mellström D, Miljkovic I, Mirel D, Nelson S, Morin Papunen L, Peeters PH, Prokopenko I, Raffel L, Reincke M, Reiner AP, Rexrode K, Rivadeneira F, Schwartz SM, Siscovick D, Soranzo N, Stöckl D, Tworoger S, Uitterlinden AG, van Gils CH, Vasan RS, Wichmann HE, Zhai G, Bhasin S, Bidlingmaier M, Chanock SJ, De Vivo I, Harris TB, Hunter DJ, Kähönen M, Liu S, Ouyang P, Spector TD, van der Schouw YT, Viikari J, Wallaschofski H, McCarthy MI, Frayling TM, Murray A, Franks S, Järvelin MR, de Jong FH, Raitakari O, Teumer A, Ohlsson C, Murabito JM, Perry JR. A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation. PLoS Genet. 2012 Jul;8(7):e1002805

224. Morris AP, Voight BF, Teslovich TM, Ferreira T, Segrè AV, Steinthorsdottir V, Strawbridge RJ, Khan H, Grallert H, Mahajan A, Prokopenko I, Kang HM, Dina C, Esko T, Fraser RM, Kanoni S, Kumar A, Lagou V, Langenberg C, Luan J, Lindgren CM, Müller-Nurasyid M, Pechlivanis S, Rayner NW, Scott LJ, Wiltshire S, Yengo L, Kinnunen L, Rossin EJ, Raychaudhuri S, Johnson AD, Dimas AS, Loos RJ, Vedantam S, Chen H, Florez JC, Fox C, Liu CT, Rybin D, Couper DJ, Kao WH, Li M, Cornelis MC, Kraft P, Sun Q, van Dam RM, Stringham HM, Chines PS, Fischer K, Fontanillas P, Holmen OL, Hunt SE, Jackson AU, Kong A, Lawrence R, Meyer J, Perry JR, Platou CG, Potter S, Rehnberg E, Robertson N, Sivapalaratnam S, Stančáková A, Stirrups K, Thorleifsson G, Tikkanen E, Wood AR, Almgren P, Atalay M, Benediktsson R, Bonnycastle LL, Burtt N, Carey J, Charpentier G, Crenshaw AT, Doney AS, Dorkhan M, Edkins S, Emilsson V, Eury E, Forsen T, Gertow K, Gigante B, Grant GB, Groves CJ, Guiducci C, Herder C, Hreidarsson AB, Hui J, James A, Jonsson A, Rathmann W, Klopp N, Kravic J, Krjutškov K, Langford C, Leander K, Lindholm E, Lobbens S, Männistö S, Mirza G, Mühleisen TW, Musk B, Parkin M, Rallidis L, Saramies J, Sennblad B, Shah S, Sigurðsson G, Silveira A, Steinbach G, Thorand B, Trakalo J, Veglia F, Wennauer R, Winckler W, Zabaneh D, Campbell H, van Duijn C, Uitterlinden AG, Hofman A, Sijbrands E, Abecasis GR, Owen KR, Zeggini E, Trip MD, Forouhi NG, Syvänen AC, Eriksson JG, Peltonen L, Nöthen MM, Balkau B, Palmer CN, Lyssenko V, Tuomi T, Isomaa B, Hunter DJ, Qi L; Wellcome Trust Case Control Consortium; Meta-Analyses of Glucose and Insulin-related traits Consortium (MAGIC) Investigators; Genetic Investigation of ANthropometric Traits (GIANT) Consortium; Asian Genetic Epidemiology Network–Type 2 Diabetes (AGEN-T2D) Consortium; South Asian Type 2 Diabetes (SAT2D) Consortium, Shuldiner AR, Roden M, Barroso I, Wilsgaard T, Beilby J, Hovingh K, Price JF, Wilson JF, Rauramaa R, Lakka TA, Lind L, Dedoussis G, Njølstad I, Pedersen NL, Khaw KT, Wareham NJ, Keinanen-Kiukaanniemi SM, Saaristo TE, Korpi-Hyövälti E, Saltevo J, Laakso M, Kuusisto J, Metspalu A, Collins FS, Mohlke KL, Bergman RN, Tuomilehto J, Boehm BO, Gieger C, Hveem K, Cauchi S, Froguel P, Baldassarre D, Tremoli E, Humphries SE, Saleheen D, Danesh J, Ingelsson E, Ripatti S, Salomaa V, Erbel R, Jöckel KH, Moebus S, Peters A, Illig T, de Faire U, Hamsten A, Morris AD, Donnelly PJ, Frayling TM, Hattersley AT,

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225. Hüsing A, Canzian F, Beckmann L, Garcia-Closas M, Diver WR, Thun MJ, Berg CD, Hoover RN, Ziegler RG, Figueroa JD, Isaacs C, Olsen A, Viallon V, Boeing H, Masala G, Trichopoulos D, Peeters PH, Lund E, Ardanaz E, Khaw KT, Lenner P, Kolonel LN, Stram DO, Le Marchand L, McCarty CA, Buring JE, Lee IM, Zhang S, Lindström S, Hankinson SE, Riboli E, Hunter DJ, Henderson BE, Chanock SJ, Haiman CA, Kraft P, Kaaks R; BPC3. Prediction of breast cancer risk by genetic risk factors, overall and by hormone receptor status. J Med Genet, 2012. 49(9):601-608.

226. Wu C, Kraft P, Zhai K, Chang J, Wang Z, Li Y, Hu Z, He Z, Jia W, Abnet CC, Liang L, Hu N, Miao X, Zhou Y, Liu Z, Zhan Q, Liu Y, Qiao Y, Zhou Y, Jin G, Guo C, Lu C, Yang H, Fu J, Yu D, Freedman ND, Ding T, Tan W, Goldstein AM, Wu T, Shen H, Ke Y, Zeng Y, Chanock SJ, Taylor PR, Lin D. Genome-wide association analyses of esophageal squamous cell carcinoma in Chinese identify multiple susceptibility loci and gene-environment interactions. Nat Genet, 2012. 44(10):1090-1097.

227. Elena JW, Steplowski E, Yu K, Hartge P, Tobias GS, Brotzman MJ, Chanock SJ, Stolzenberg-Solomon RZ, Arslan AA, Bueno-de-Mesquita HB, Helzlsouer K, Jacobs EJ, Lacroix A, Petersen G, Zheng W, Albanes D, Allen NE, Amundadottir L, Bao Y, Boeing H, Boutron-Ruault MC, Buring JE, Gaziano JM, Giovannucci EL, Duell EJ, Hallmans G, Howard BV, Hunter DJ, Hutchinson A, Jacobs KB, Kooperberg C, Kraft P, Mendelsohn JB, Michaud DS, Palli D, Phillips LS, Overvad K, Patel AV, Sansbury L, Shu XO, Simon MS, Slimani N, Trichopoulos D, Visvanathan K, Virtamo J, Wolpin BM, Zeleniuch-Jacquotte A, Fuchs CS, Hoover RN, Gross M. Diabetes and risk of pancreatic cancer: a pooled analysis from the pancreatic cancer cohort consortium. Cancer Causes Control, 2013. 24(1):13-25.

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229. Shui IM, Mucci LA, Wilson KM, Kraft P, Penney KL, Stampfer MJ, Giovannucci E. Common genetic variation of the calcium sensing receptor and lethal prostate cancer risk. Cancer Epidemiol Biomarkers Prev, 2013. 22(1):118-126.

230. Chen YC, Huang YL, Platz EA, Alderete JF, Zheng L, Rider JR, Kraft P, Giovannucci E, Sutcliffe S. Prospective study of effect modification by Toll-like receptor 4 variation on the association between Trichomonas vaginalis serostatus and prostate cancer. Cancer Causes Control, 2013. 24(1):175-180.

231. Wu C, Kraft P, Stolzenberg-Solomon R, Steplowski E, Brotzman M, Xu M, Mudgal P, Amundadottir L, Arslan AA, Bueno-de-Mesquita HB, Gross M, Helzlsouer K, Jacobs EJ, Kooperberg C, Petersen GM, Zheng W, Albanes D, Boutron-Ruault MC, Buring JE, Canzian F, Cao G, Duell EJ, Elena JW, Gaziano JM, Giovannucci EL, Hallmans G, Hutchinson A, Hunter DJ, Jenab M, Jiang G, Khaw KT, Lacroix A, Li Z, Mendelsohn JB, Panico S, Patel AV, Qian ZR, Riboli E, Sesso H, Shen H, Shu XO, Tjonneland A, Tobias GS, Trichopoulos D, Virtamo J, Visvanathan K, Wactawski-Wende J, Wang C, Yu K, Zeleniuch-Jacquotte A, Chanock S, Hoover R, Hartge P, Fuchs CS, Lin D, Wolpin BM. Genome-wide association study of survival in patients with pancreatic adenocarcinoma. Gut, 2014. 63(1):152-60..

232. Hendrickson SJ, Hazra A, Chen C, Eliassen AH, Kraft P, Rosner BA, Willett WC. β-Carotene 15,15'-monooxygenase 1 single nucleotide polymorphisms in relation to plasma carotenoid and retinol concentrations in women of European descent. Am J Clin Nutr, 2012. 96(6):1379-1389.

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233. Bao Y, Giovannucci EL, Kraft P, Stampfer MJ, Ogino S, Ma J, Buring JE, Sesso HD, Lee IM, Gaziano JM, Rifai N, Pollak MN, Cochrane BB, Kaklamani V, Lin JH, Manson JE, Fuchs CS, Wolpin BM. A prospective study of plasma adiponectin and pancreatic cancer risk in five US cohorts. J Natl Cancer Inst, 2013. 105(2):95-103.

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235. Machiela MJ, Chen C, Liang L, Diver WR, Stevens VL, Tsilidis KK, Haiman CA, Chanock SJ, Hunter DJ, Kraft P; on behalf of the National Cancer Institute Breast and Prostate Cancer Cohort Consortium. One thousand genomes imputation in the National Cancer Institute Breast and Prostate Cancer Cohort Consortium aggressive prostate cancer genome-wide association study. Prostate, 2013. 73(7):677-689.

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237. Amin Al Olama A, Kote-Jarai Z, Schumacher FR, Wiklund F, Berndt SI, Benlloch S, Giles GG, Severi G, Neal DE, Hamdy FC, Donovan JL, Hunter DJ, Henderson BE, Thun MJ, Gaziano M, Giovannucci EL, Siddiq A, Travis RC, Cox DG, Canzian F, Riboli E, Key TJ, Andriole G, Albanes D, Hayes RB, Schleutker J, Auvinen A, Tammela TL, Weischer M, Stanford JL, Ostrander EA, Cybulski C, Lubinski J, Thibodeau SN, Schaid DJ, Sorensen KD, Batra J, Clements JA, Chambers S, Aitken J, Gardiner RA, Maier C, Vogel W, Dörk T, Brenner H, Habuchi T, Ingles S, John EM, Dickinson JL, Cannon-Albright L, Teixeira MR, Kaneva R, Zhang HW, Lu YJ, Park JY, Cooney KA, Muir KR, Leongamornlert DA, Saunders E, Tymrakiewicz M, Mahmud N, Guy M, Govindasami K, O'Brien LT, Wilkinson RA, Hall AL, Sawyer EJ, Dadaev T, Morrison J, Dearnaley DP, Horwich A, Huddart RA, Khoo VS, Parker CC, Van As N, Woodhouse CJ, Thompson A, Dudderidge T, Ogden C, Cooper CS, Lophatonanon A, Southey MC, Hopper JL, English D, Virtamo J, Le Marchand L, Campa D, Kaaks R, Lindstrom S, Diver WR, Gapstur S, Yeager M, Cox A, Stern MC, Corral R, Aly M, Isaacs W, Adolfsson J, Xu J, Zheng SL, Wahlfors T, Taari K, Kujala P, Klarskov P, Nordestgaard BG, Røder MA, Frikke-Schmidt R, Bojesen SE, Fitzgerald LM, Kolb S, Kwon EM, Karyadi DM, Orntoft TF, Borre M, Rinckleb A, Luedeke M, Herkommer K, Meyer A, Serth J, Marthick JR, Patterson B, Wokolorczyk D, Spurdle A, Lose F, McDonnell SK, Joshi AD, Shahabi A, Pinto P, Santos J, Ray A, Sellers TA, Lin HY, Stephenson RA, Teerlink C, Muller H, Rothenbacher D, Tsuchiya N, Narita S, Cao GW, Slavov C, Mitev V; The UK Genetic Prostate Cancer Study Collaborators/British Association of Urological Surgeons' Section of Oncology; The UK ProtecT Study Collaborators; The Australian Prostate Cancer

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246. Kote-Jarai Z, Saunders EJ, Leongamornlert DA, Tymrakiewicz M, Dadaev T, Jugurnauth-Little S, Ross-Adams H, Al Olama AA, Benlloch S, Halim S, Russel R, Dunning AM, Luccarini C, Dennis J, Neal DE, Hamdy FC, Donovan JL, Muir K, Giles GG, Severi G, Wiklund F, Gronberg H, Haiman CA, Schumacher F, Henderson BE, Marchand LL, Lindstrom S, Kraft P, Hunter DJ, Gapstur S, Chanock S, Berndt SI, Albanes D, Andriole G, Schleutker J, Weischer M, Canzian F, Riboli E, Key TJ, Travis RC, Campa D, Ingles SA, John EM, Hayes RB, Pharoah P, Khaw KT, Stanford JL, Ostrander EA, Signorello LB, Thibodeau SN, Schaid D, Maier C, Vogel W, Kibel AS, Cybulski C, Lubinski J, Cannon-Albright L, Brenner H, Park JY, Kaneva R, Batra J, Spurdle A, Clements JA, Teixeira MR, Govindasami K, Guy M, Wilkinson RA, Sawyer EJ, Morgan A, Dicks E, Baynes C, Conroy D, Bojesen SE, Kaaks R, Vincent D, Bacot F, Tessier DC; COGS-CRUK GWAS-ELLIPSE (Part of GAME-ON) Initiative; The UK Genetic Prostate Cancer Study Collaborators/British Association of Urological Surgeons’ Section of Oncology; The UK ProtecT Study Collaborators; The PRACTICAL Consortium, Easton DF, Eeles RA. Fine-mapping identifies multiple prostate cancer risk loci at 5p15, one of which associates with TERT expression. Hum Mol Genet, 2013. 22(12):2520-8.

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249. Garcia-Closas M, Couch FJ, Lindstrom S, Michailidou K, Schmidt MK, Brook MN, Orr N, Rhie SK, Riboli E, Feigelson HS, Le Marchand L, Buring JE, Eccles D, Miron P, Fasching PA, Brauch H, Chang-Claude J, Carpenter J, Godwin AK, Nevanlinna H, Giles GG, Cox A, Hopper JL, Bolla MK, Wang Q, Dennis J, Dicks E, Howat WJ, Schoof N, Bojesen SE, Lambrechts D, Broeks A, Andrulis IL, Guénel P, Burwinkel B, Sawyer EJ, Hollestelle A, Fletcher O, Winqvist R, Brenner H, Mannermaa A, Hamann U, Meindl A, Lindblom A, Zheng W, Devillee P, Goldberg MS, Lubinski J, Kristensen V, Swerdlow A, Anton-Culver H, Dörk T, Muir K, Matsuo K, Wu AH, Radice P, Teo SH, Shu XO, Blot W, Kang D, Hartman M, Sangrajrang S, Shen CY, Southey MC, Park DJ, Hammet F, Stone J, Veer LJ, Rutgers EJ, Lophatananon A, Stewart-Brown S, Siriwanarangsan P, Peto J, Schrauder MG, Ekici AB, Beckmann MW, Dos Santos Silva I, Johnson N, Warren H, Tomlinson I, Kerin MJ, Miller N, Marme F, Schneeweiss A, Sohn C, Truong T, Laurent-Puig P, Kerbrat P, Nordestgaard BG, Nielsen SF, Flyger H, Milne RL, Perez JI, Menéndez P, Müller H, Arndt V, Stegmaier C, Lichtner P, Lochmann M, Justenhoven C, Ko YD; Gene ENvironmental Interaction and breast CAncer (GENICA) Network, Muranen TA, Aittomäki K, Blomqvist C, Greco D, Heikkinen T, Ito H, Iwata H, Yatabe Y, Antonenkova NN, Margolin S, Kataja V, Kosma VM, Hartikainen JM, Balleine R; kConFab Investigators, Tseng CC, Berg DV, Stram DO, Neven P, Dieudonné AS, Leunen K, Rudolph A, Nickels S, Flesch-Janys D, Peterlongo P, Peissel B, Bernard L, Olson JE, Wang X, Stevens K, Severi G, Baglietto L, McLean C, Coetzee GA, Feng Y, Henderson BE, Schumacher F, Bogdanova NV, Labrèche F, Dumont M, Yip CH, Taib NA, Cheng CY, Shrubsole M, Long J, Pylkäs K, Jukkola-Vuorinen A, Kauppila S, Knight JA, Glendon G, Mulligan AM, Tollenaar RA, Seynaeve CM, Kriege M, Hooning MJ, van den Ouweland AM, van Deurzen CH, Lu W, Gao YT, Cai H, Balasubramanian SP, Cross SS, Reed MW, Signorello L, Cai Q, Shah M, Miao H, Chan CW, Chia KS, Jakubowska A, Jaworska K, Durda K, Hsiung CN, Wu PE, Yu JC, Ashworth A, Jones M, Tessier DC, González-Neira A, Pita G, Alonso MR, Vincent D, Bacot F, Ambrosone CB, Bandera EV, John EM, Chen GK, Hu JJ, Rodriguez-Gil JL, Bernstein L, Press MF, Ziegler RG, Millikan RM, Deming-Halverson SL, Nyante S, Ingles SA, Waisfisz Q, Tsimiklis H, Makalic E, Schmidt D, Bui M, Gibson L, Müller-Myhsok B, Schmutzler RK, Hein R, Dahmen N, Beckmann L, Aaltonen K, Czene K, Irwanto A, Liu J, Turnbull C; Familial Breast Cancer Study (FBCS), Rahman N, Meijers-Heijboer H, Uitterlinden AG, Rivadeneira F; stralian Breast Cancer Tissue Bank (ABCTB) Investigators, Olswold C, Slager S, Pilarski R, Ademuyiwa F, Konstantopoulou I, Martin NG, Montgomery GW, Slamon DJ, Rauh C, Lux MP, Jud SM, Bruning T, Weaver J, Sharma P, Pathak H, Tapper W, Gerty S, Durcan L, Trichopoulos D, Tumino R, Peeters PH, Kaaks R, Campa D, Canzian F, Weiderpass E, Johansson M, Khaw KT, Travis R, Clavel-Chapelon F, Kolonel LN, Chen C, Beck A, Hankinson SE, Berg CD, Hoover RN, Lissowska J, Figueroa JD, Chasman DI, Gaudet MM, Diver WR, Willett WC, Hunter DJ, Simard J, Benitez J, Dunning AM, Sherman ME, Chenevix-Trench G, Chanock SJ, Hall P, Pharoah PD, Vachon C, Easton DF, Haiman

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252. Hein R, Flesch-Janys D, Dahmen N, Beckmann L, Lindström S, Schoof N, Czene K, Mittelstraß K, Illig T, Seibold P, Behrens S, Humphreys K, Li J, Liu J, Olson JE, Wang X, Hankinson SE, Truong T, Menegaux F, Dos Santos Silva I, Johnson N; GENICA Network, Chen ST, Yu JC, Ziogas A, Kataja V, Kosma VM, Mannermaa A, Anton-Culver H, Shen CY, Brauch H, Peto J, Guénel P, Kraft P, Couch FJ, Easton DF, Hall P, Chang-Claude J. A genome-wide association study to identify genetic susceptibility loci that modify ductal and lobular postmenopausal breast cancer risk associated with menopausal hormone therapy use: a two-stage design with replication. Breast Cancer Res Treat, 2013. 138(2):529-542.

253. Hek K, Demirkan A, Lahti J, Terracciano A, Teumer A, Cornelis MC, Amin N, Bakshis E, Baumert J, Ding J, Liu Y, Marciante K, Meirelles O, Nalls MA, Sun YV, Vogelzangs N, Yu L, Bandinelli S, Benjamin EJ, Bennett DA, Boomsma D, Cannas A, Coker LH, de Geus E, De Jager PL, Diez-Roux AV, Purcell S, Hu FB, Rimm EB, Hunter DJ, Jensen MK, Curhan G, Rice K, Penman AD, Rotter JI, Sotoodehnia N, Emeny R, Eriksson JG, Evans DA, Ferrucci L, Fornage M, Gudnason V, Hofman A, Illig T, Kardia S, Kelly-Hayes M, Koenen K, Kraft P, Kuningas M, Massaro JM, Melzer D, Mulas A, Mulder CL, Murray A, Oostra BA, Palotie A, Penninx B, Petersmann A, Pilling LC, Psaty B, Rawal R, Reiman EM, Schulz A, Shulman JM, Singleton AB, Smith AV, Sutin AR, Uitterlinden AG, Völzke H, Widen E, Yaffe K, Zonderman AB, Cucca F, Harris T, Ladwig KH, Llewellyn DJ, Räikkönen K, Tanaka T, van Duijn CM, Grabe HJ, Launer LJ, Lunetta KL, Mosley TH Jr, Newman AB, Tiemeier H, Murabito J. A genome-wide association study of depressive symptons. Biol Psychiatry, 2013. 73(7):667-678.

254. French JD, Ghoussaini M, Edwards SL, Meyer KB, Michailidou K, Ahmed S, Khan S, Maranian MJ, O'Reilly M, Hillman KM, Betts JA, Carroll T, Bailey PJ, Dicks E, Beesley J, Tyrer J, Maia AT, Beck A, Knoblauch NW, Chen C, Kraft P, Barnes D, González-Neira A, Alonso MR, Herrero D, Tessier DC, Vincent D, Bacot F, Luccarini C, Baynes C, Conroy D, Dennis J, Bolla MK, Wang Q, Hopper JL, Southey MC, Schmidt MK, Broeks A, Verhoef S, Cornelissen S, Muir K, Lophatananon A, Stewart-Brown S, Siriwanarangsan P, Fasching PA, Loehberg CR, Ekici AB, Beckmann MW, Peto J, Dos Santos Silva I, Johnson N, Aitken Z, Sawyer EJ, Tomlinson I, Kerin MJ, Miller N, Marme F, Schneeweiss A, Sohn C, Burwinkel B, Guénel P, Truong T, Laurent-Puig P, Menegaux F, Bojesen SE, Nordestgaard BG, Nielsen SF, Flyger H, Milne RL, Zamora MP, Arias Perez JI, Benitez J, Anton-Culver H, Brenner H, Müller H, Arndt V, Stegmaier C, Meindl A, Lichtner P, Schmutzler RK, Engel C, Brauch H, Hamann U, Justenhoven C; GENICA Network, Aaltonen K, Heikkilä P, Aittomäki K,

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Blomqvist C, Matsuo K, Ito H, Iwata H, Sueta A, Bogdanova NV, Antonenkova NN, Dörk T, Lindblom A, Margolin S, Mannermaa A, Kataja V, Kosma VM, Hartikainen JM; kConFab Investigators, Wu AH, Tseng CC, Van Den Berg D, Stram DO, Lambrechts D, Peeters S, Smeets A, Floris G, Chang-Claude J, Rudolph A, Nickels S, Flesch-Janys D, Radice P, Peterlongo P, Bonanni B, Sardella D, Couch FJ, Wang X, Pankratz VS, Lee A, Giles GG, Severi G, Baglietto L, Haiman CA, Henderson BE, Schumacher F, Le Marchand L, Simard J, Goldberg MS, Labrèche F, Dumont M, Teo SH, Yip CH, Ng CH, Vithana EN, Kristensen V, Zheng W, Deming-Halverson S, Shrubsole M, Long J, Winqvist R, Pylkäs K, Jukkola-Vuorinen A, Grip M, Andrulis IL, Knight JA, Glendon G, Mulligan AM, Devilee P, Seynaeve C, García-Closas M, Figueroa J, Chanock SJ, Lissowska J, Czene K, Klevebring D, Schoof N, Hooning MJ, Martens JW, Collée JM, Tilanus-Linthorst M, Hall P, Li J, Liu J, Humphreys K, Shu XO, Lu W, Gao YT, Cai H, Cox A, Balasubramanian SP, Blot W, Signorello LB, Cai Q, Pharoah PD, Healey CS, Shah M, Pooley KA, Kang D, Yoo KY, Noh DY, Hartman M, Miao H, Sng JH, Sim X, Jakubowska A, Lubinski J, Jaworska-Bieniek K, Durda K, Sangrajrang S, Gaborieau V, McKay J, Toland AE, Ambrosone CB, Yannoukakos D, Godwin AK, Shen CY, Hsiung CN, Wu PE, Chen ST, Swerdlow A, Ashworth A, Orr N, Schoemaker MJ, Ponder BA, Nevanlinna H, Brown MA, Chenevix-Trench G, Easton DF, Dunning AM. Functional variants at the 11q13 locus for breast cancer regulate cyclin D1 expression through long-range enhancers. Am J Hum Genet, 2013. 92(4):489-503.

255. Fernández-Rhodes L, Demerath EW, Cousminer DL, Tao R, Dreyfus JG, Esko T, Smith AV, Gudnason V, Harris TB, Launer L, McArdle PF, Yerges-Armstrong LM, Elks CE, Strachan DP, Kutalik Z, Vollenweider P, Feenstra B, Boyd HA, Metspalu A, Mihailov E, Broer L, Zillikens MC, Oostra B, van Duijn CM, Lunetta KL, Perry JR, Murray A, Koller DL, Lai D, Corre T, Toniolo D, Albrecht E, Stöckl D, Grallert H, Gieger C, Hayward C, Polasek O, Rudan I, Wilson JF, He C, Kraft P, Hu FB, Hunter DJ, Hottenga JJ, Willemsen G, Boomsma DI, Byrne EM, Martin NG, Montgomery GW, Warrington NM, Pennell CE, Stolk L, Visser JA, Hofman A, Uitterlinden AG, Rivadeneira F, Lin P, Fisher SL, Bierut LJ, Crisponi L, Porcu E, Mangino M, Zhai G, Spector TD, Buring JE, Rose LM, Ridker PM, Poole C, Hirschhorn JN, Murabito JM, Chasman DI, Widen E, North KE, Ong KK, Franceschini N. Association of adiposity genetic variants with menarche timing in 92,105 women of European descent. Am J Epidemiol, 2013. 178(3):451-60.

256. Bao Y, Giovannucci EL, Kraft P, Qian ZR, Wu C, Ogino S, Gaziano JM, Stampfer MJ, Ma J, Buring JE, Sesso HD, Lee IM, Rifai N, Pollak MN, Jiao L, Lessin L, Cochrane BB, Manson JE, Fuchs CS, Wolpin BM. Inflammatory plasma markers and pancreatic cancer risk: a prospective study of five U.S. cohorts. Cancer Epidemiol Biomarkers Prev, 2013. 22(5):855-61.

257. den Hoed M, Eijgelsheim M, Esko T, Brundel BJ, Peal DS, Evans DM, Nolte IM, Segrè AV, Holm H, Handsaker RE, Westra HJ, Johnson T, Isaacs A, Yang J, Lundby A, Zhao JH, Kim YJ, Go MJ, Almgren P, Bochud M, Boucher G, Cornelis MC, Gudbjartsson D, Hadley D, van der Harst P, Hayward C, den Heijer M, Igl W, Jackson AU, Kutalik Z, Luan J, Kemp JP, Kristiansson K, Ladenvall C, Lorentzon M, Montasser ME, Njajou OT, O'Reilly PF, Padmanabhan S, St Pourcain B, Rankinen T, Salo P, Tanaka T, Timpson NJ, Vitart V, Waite L, Wheeler W, Zhang W, Draisma HH, Feitosa MF, Kerr KF, Lind PA, Mihailov E, Onland-Moret NC, Song C, Weedon MN, Xie W, Yengo L, Absher D, Albert CM, Alonso A, Arking DE, de Bakker PI, Balkau B, Barlassina C, Benaglio P, Bis JC, Bouatia-Naji N, Brage S, Chanock SJ, Chines PS, Chung M, Darbar D, Dina C, Dörr M, Elliott P, Felix SB, Fischer K, Fuchsberger C, de Geus EJ, Goyette P, Gudnason V, Harris TB, Hartikainen AL, Havulinna AS, Heckbert SR, Hicks AA, Hofman A, Holewijn S, Hoogstra-Berends F, Hottenga JJ, Jensen MK, Johansson A, Junttila J, Kääb S, Kanon B, Ketkar S, Khaw KT, Knowles JW, Kooner AS, Kors JA, Kumari M, Milani L, Laiho P, Lakatta EG, Langenberg C, Leusink M, Liu Y, Luben RN, Lunetta KL, Lynch SN, Markus MR, Marques-Vidal P, Leach IM, McArdle WL, McCarroll SA, Medland SE, Miller KA, Montgomery GW, Morrison AC, M Vuml Ller-Nurasyid M, Navarro P, Nelis M, O'Connell JR, O'Donnell CJ, Ong KK, Newman AB, Peters A, Polasek O, Pouta A, Pramstaller PP, Psaty BM, Rao DC, Ring SM, Rossin EJ, Rudan D, Sanna S, Scott RA, Sehmi JS, Sharp S, Shin JT, Singleton AB, Smith AV, Soranzo N, Spector TD, Stewart C, Stringham HM, Tarasov KV, Uitterlinden AG,

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Vandenput L, Hwang SJ, Whitfield JB, Wijmenga C, Wild SH, Willemsen G, Wilson JF, Witteman JC, Wong A, Wong Q, Jamshidi Y, Zitting P, Boer JM, Boomsma DI, Borecki IB, van Duijn CM, Ekelund U, Forouhi NG, Froguel P, Hingorani A, Ingelsson E, Kivimaki M, Kronmal RA, Kuh D, Lind L, Martin NG, Oostra BA, Pedersen NL, Quertermous T, Rotter JI, van der Schouw YT, Verschuren WM, Walker M, Albanes D, Arnar DO, Assimes TL, Bandinelli S, Boehnke M, de Boer RA, Bouchard C, Caulfield WL, Chambers JC, Curhan G, Cusi D, Eriksson J, Ferrucci L, van Gilst WH, Glorioso N, de Graaf J, Groop L, Gyllensten U, Hsueh WC, Hu FB, Huikuri HV, Hunter DJ, Iribarren C, Isomaa B, Jarvelin MR, Jula A, Kähönen M, Kiemeney LA, van der Klauw MM, Kooner JS, Kraft P, Iacoviello L, Lehtimäki T, Lokki ML, Mitchell BD, Navis G, Nieminen MS, Ohlsson C, Poulter NR, Qi L, Raitakari OT, Rimm EB, Rioux JD, Rizzi F, Rudan I, Salomaa V, Sever PS, Shields DC, Shuldiner AR, Sinisalo J, Stanton AV, Stolk RP, Strachan DP, Tardif JC, Thorsteinsdottir U, Tuomilehto J, van Veldhuisen DJ, Virtamo J, Viikari J, Vollenweider P, Waeber G, Widen E, Cho YS, Olsen JV, Visscher PM, Willer C, Franke L; Global BPgen Consortium; CARDIoGRAM Consortium, Erdmann J, Thompson JR; PR GWAS Consortium, Pfeufer A; QRS GWAS Consortium, Sotoodehnia N; QT-IGC Consortium, Newton-Cheh C; CHARGE-AF Consortium, Ellinor PT, Stricker BH, Metspalu A, Perola M, Beckmann JS, Smith GD, Stefansson K, Wareham NJ, Munroe PB, Sibon OC, Milan DJ, Snieder H, Samani NJ, Loos RJ. Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders. Nat Genet, 2013. 45(6):621-31.

258. Zhang M, Song F, Liang L, Nan H, Zhang J, Liu H, Wang LE, Wei Q, Lee JE, Amos CI, Kraft P, Qureshi AA, Han J. Genome-wide association studies identify several new loci associated with pigmentation traits and skin cancer risk in European Americans. Hum Mol Genet, 2013. 22(14):2948-59.

259. Hendrickson SJ, Lindström S, Eliassen AH, Rosner BA, Chen C, Barrdahl M, Brinton L, Buring J, Canzian F, Chanock S, Clavel-Chapelon F, Figueroa JD, Gapstur SM, Garcia-Closas M, Gaudet MM, Haiman CA, Hazra A, Henderson B, Hoover R, Hüsing A, Johansson M, Kaaks R, Khaw KT, Kolonel LN, Le Marchand L, Lissowska J, Lund E, McCullough ML, Peplonska B, Riboli E, Sacerdote C, Sánchez MJ, Tjønneland A, Trichopoulos D, van Gils CH, Yeager M, Kraft P, Hunter DJ, Ziegler RG, Willett WC. Plasma carotenoid- and retinol-weighted multi-SNP scores and risk of breast cancer in the National Cancer Institute Breast and Prostate Cancer Cohort Consortium. Cancer Epidemiol Biomarkers Prev, 2013. 22(5):927-36.

260. Aschard H, Zaitlen N, Tamimi RM, Lindström S, Kraft P. A nonparametric test to detect quantitative trait loci where the phenotypic distribution differs by genotypes. Genet Epidemiol, 2013. 37(4):323-333.

261. Wu C, Chang J, Ma B, Miao X, Zhou Y, Liu Y, Li Y, Wu T, Hu Z, Shen H, Jia W, Zeng Y, Lin D, Kraft P. The case-only test for gene-environment interaction is not uniformly powerful: an empirical example. Genet Epidemiol, 2013. 37(4):402-407.

262. Zaitlen N, Kraft P, Patterson N, Pasaniuc B, Bhatia G, Pollack S, Price AL. Using extended genealogy to estimate components of heritability for 23 quantitative and dichotomous traits. PLoS Genet, 2013. 9(5):e1003520.

263. COMPLEXO, Southey MC, Park DJ, Nguyen-Dumont T, Campbell I, Thompson E, Trainer AH, Chenevix-Trench G, Simard J, Dumont M, Soucy P, Thomassen M, Jønson L, Pedersen IS, Hansen TV, Nevanlinna H, Khan S, Sinilnikova O, Mazoyer S, Lesueur F, Damiola F, Schmutzler R, Meindl A, Hahnen E, Dufault MR, Chris Chan T, Kwong A, Barkardóttir R, Radice P, Peterlongo P, Devilee P, Hilbers F, Benitez J, Kvist A, Törngren T, Easton D, Hunter D, Lindstrom S, Kraft P, Zheng W, Gao YT, Long J, Ramus S, Feng BJ, Weitzel JN, Nathanson K, Offit K, Joseph V, Robson M, Schrader K, Wang SM, Kim YC, Lynch H, Snyder C, Tavtigian S, Neuhausen S, Couch FJ, Goldgar DE. COMPLEXO: Identifying the missing heritability of breast cancer via next generation collaboration. Breast Cancer Res, 2013.

264. Savage SA, Mirabello L, Wang Z, Gastier-Foster JM, Gorlick R, Khanna C, Flanagan AM, Tirabosco R, Andrulis IL, Wunder JS, Gokgoz N, Patiño-Garcia A, Sierrasesúmaga L, Lecanda F, Kurucu N, Ilhan

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IE, Sari N, Serra M, Hattinger C, Picci P, Spector LG, Barkauskas DA, Marina N, de Toledo SR, Petrilli AS, Amary MF, Halai D, Thomas DM, Douglass C, Meltzer PS, Jacobs K, Chung CC, Berndt SI, Purdue MP, Caporaso NE, Tucker M, Rothman N, Landi MT, Silverman DT, Kraft P, Hunter DJ, Malats N, Kogevinas M, Wacholder S, Troisi R, Helman L, Fraumeni JF Jr, Yeager M, Hoover RN, Chanock SJ. Genome-wide association study identifies two susceptibility loci for osteosarcoma. Nat Genet, 2013. 45(7):799-803.

265. Pasquale LR, Loomis SJ, Weinreb RN, Kang JH, Yaspan BL, Bailey JC, Gaasterland D, Gaasterland T, Lee RK, Scott WK, Lichter PR, Budenz DL, Liu Y, Realini T, Friedman DS, McCarty CA, Moroi SE, Olson L, Schuman JS, Singh K, Vollrath D, Wollstein G, Zack DJ, Brilliant M, Sit AJ, Christen WG, Fingert J, Kraft P, Zhang K, Allingham RR, Pericak-Vance MA, Richards JE, Hauser MA, Haines JL, Wiggs JL. Estrogen pathway polymorphisms in relation to primary open angle glaucoma: an analysis accounting for gender from the United States. Mol Vis, 2013. 19:1471-81.

266. Wolpin BM, Bao Y, Qian ZR, Wu C, Kraft P, Ogino S, Stampfer MJ, Sato K, Ma J, Buring JE, Sesso HD, Lee IM, Gaziano JM, McTiernan A, Phillips LS, Cochrane BB, Pollak MN, Manson JE, Giovannucci EL, Fuchs CS. Hyperglycemia, insulin resistance, impaired pancreatic β-cell function, and risk of pancreatic cancer. J Natl Cancer Inst, 2013. 105(14):1027-35.

267. Faye LL, Machiela MJ, Kraft P, Bull SB, Sun L. Re-ranking sequencing variants in the post-GWAS era for accurate causal variant identification. PLoS Genet, 2013. 9(8):e1003609.

268. Berndt SI, Skibola CF, Joseph V, Camp NJ, Nieters A, Wang Z, Cozen W, Monnereau A, Wang SS, Kelly RS, Lan Q, Teras LR, Chatterjee N, Chung CC, Yeager M, Brooks-Wilson AR, Hartge P, Purdue MP, Birmann BM, Armstrong BK, Cocco P, Zhang Y, Severi G, Zeleniuch-Jacquotte A, Lawrence C, Burdette L, Yuenger J, Hutchinson A, Jacobs KB, Call TG, Shanafelt TD, Novak AJ, Kay NE, Liebow M, Wang AH, Smedby KE, Adami HO, Melbye M, Glimelius B, Chang ET, Glenn M, Curtin K, Cannon-Albright LA, Jones B, Diver WR, Link BK, Weiner GJ, Conde L, Bracci PM, Riby J, Holly EA, Smith MT, Jackson RD, Tinker LF, Benavente Y, Becker N, Boffetta P, Brennan P, Foretova L, Maynadie M, McKay J, Staines A, Rabe KG, Achenbach SJ, Vachon CM, Goldin LR, Strom SS, Lanasa MC, Spector LG, Leis JF, Cunningham JM, Weinberg JB, Morrison VA, Caporaso NE, Norman AD, Linet MS, De Roos AJ, Morton LM, Severson RK, Riboli E, Vineis P, Kaaks R, Trichopoulos D, Masala G, Weiderpass E, Chirlaque MD, Vermeulen RC, Travis RC, Giles GG, Albanes D, Virtamo J, Weinstein S, Clavel J, Zheng T, Holford TR, Offit K, Zelenetz A, Klein RJ, Spinelli JJ, Bertrand KA, Laden F, Giovannucci E, Kraft P, Kricker A, Turner J, Vajdic CM, Ennas MG, Ferri GM, Miligi L, Liang L, Sampson J, Crouch S, Park JH, North KE, Cox A, Snowden JA, Wright J, Carracedo A, Lopez-Otin C, Bea S, Salaverria I, Martin-Garcia D, Campo E, Fraumeni JF Jr, de Sanjose S, Hjalgrim H, Cerhan JR, Chanock SJ, Rothman N, Slager SL. Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia. Nat Genet, 2013. 45(8):868-76.

269. Cornelis MC, Rimm EB, Curhan GC, Kraft P, Hunter DJ, Hu FB, van Dam RM. Obesity susceptibility loci and uncontrolled eating, emotional eating and cognitive restraint behaviors in men and women. Obesity (Silver Spring), 2014. 22(5):E135-41.

270. Cheng I, Kocarnik JM, Dumitrescu L, Lindor NM, Chang-Claude J, Avery CL, Caberto CP, Love SA, Slattery ML, Chan AT, Baron JA, Hindorff LA, Park SL, Schumacher FR, Hoffmeister M, Kraft P, Butler AM, Duggan DJ, Hou L, Carlson CS, Monroe KR, Lin Y, Carty CL, Mann S, Ma J, Giovannucci EL, Fuchs CS, Newcomb PA, Jenkins MA, Hopper JL, Haile RW, Conti DV, Campbell PT, Potter JD, Caan BJ, Schoen RE, Hayes RB, Chanock SJ, Berndt SI, Küry S, Bézieau S, Ambite JL, Kumaraguruparan G, Richardson DM, Goodloe RJ, Dilks HH, Baker P, Zanke BW, Lemire M, Gallinger S, Hsu L, Jiao S, Harrison TA, Seminara D, Haiman CA, Kooperberg C, Wilkens LR, Hutter CM, White E, Crawford DC, Heiss G, Hudson TJ, Brenner H, Bush WS, Casey G, Le Marchand L, Peters U. Pleiotropic effects of genetic risk variants for other cancers on colorectal cancer risk: PAGE, GECCO and CCFR consortia. Gut, 2014. 63(5):800-7.

271. van Meurs JB, Pare G, Schwartz SM, Hazra A, Tanaka T, Vermeulen SH, Cotlarciuc I, Yuan X, Mälarstig A, Bandinelli S, Bis JC, Blom H, Brown MJ, Chen C, Chen YD, Clarke RJ, Dehghan A,

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Erdmann J, Ferrucci L, Hamsten A, Hofman A, Hunter DJ, Goel A, Johnson AD, Kathiresan S, Kampman E, Kiel DP, Kiemeney LA, Chambers JC, Kraft P, Lindemans J, McKnight B, Nelson CP, O'Donnell CJ, Psaty BM, Ridker PM, Rivadeneira F, Rose LM, Seedorf U, Siscovick DS, Schunkert H, Selhub J, Ueland PM, Vollenweider P, Waeber G, Waterworth DM, Watkins H, Witteman JC, den Heijer M, Jacques P, Uitterlinden AG, Kooner JS, Rader DJ, Reilly MP, Mooser V, Chasman DI, Samani NJ, Ahmadi KR. Common genetic loci influencing plasma homocysteine concentrations and their effect on risk of coronary artery disease. Am J Clin Nutr, 2013. 98(3):668-76.

272. Klein AP, Lindström S, Mendelsohn JB, Steplowski E, Arslan AA, Bueno-de-Mesquita HB, Fuchs CS, Gallinger S, Gross M, Helzlsouer K, Holly EA, Jacobs EJ, Lacroix A, Li D, Mandelson MT, Olson SH, Petersen GM, Risch HA, Stolzenberg-Solomon RZ, Zheng W, Amundadottir L, Albanes D, Allen NE, Bamlet WR, Boutron-Ruault MC, Buring JE, Bracci PM, Canzian F, Clipp S, Cotterchio M, Duell EJ, Elena J, Gaziano JM, Giovannucci EL, Goggins M, Hallmans G, Hassan M, Hutchinson A, Hunter DJ, Kooperberg C, Kurtz RC, Liu S, Overvad K, Palli D, Patel AV, Rabe KG, Shu XO, Slimani N, Tobias GS, Trichopoulos D, Van Den Eeden SK, Vineis P, Virtamo J, Wactawski-Wende J, Wolpin BM, Yu H, Yu K, Zeleniuch-Jacquotte A, Chanock SJ, Hoover RN, Hartge P, Kraft P. An absolute risk model to identify individuals at elevated risk for pancreatic cancer in the general population. PLoS One, 2013. 8(9):e72311.

273. De Vivo I, Prescott J, Setiawan VW, Olson SH, Wentzensen N; The Australian National Endometrial Cancer Study Group, Attia J, Black A, Brinton L, Chen C, Chen C, Cook LS, Crous-Bou M, Doherty J, Dunning AM, Easton DF, Friedenreich CM, Garcia-Closas M, Gaudet MM, Haiman C, Hankinson SE, Hartge P, Henderson BE, Holliday E, Horn-Ross PL, Hunter DJ, Le Marchand L, Liang X, Lissowska J, Long J, Lu L, Magliocco AM, McEvoy M, O'Mara TA, Orlow I, Painter JN, Pooler L, Rastogi R, Rebbeck TR, Risch H, Sacerdote C, Schumacher F, Scott RJ, Sheng X, Shu XO, Spurdle AB, Thompson D, Vanden Berg D, Weiss NS, Xia L, Xiang YB, Yang HP, Yu H, Zheng W, Chanock S, Kraft P. Genome-wide association study of endometrial cancer in E2C2. Hum Genet, 2014. 133(2):211-24.

274. Yuan C, Bao Y, Wu C, Kraft P, Ogino S, Ng K, Qian ZR, Rubinson DA, Stampfer MJ, Giovannucci EL, Wolpin BM. Prediagnostic body mass index and pancreatic cancer survival. J Clin Oncol, 2013.

275. Figueroa JD, Ye Y, Siddiq A, Garcia-Closas M, Chatterjee N, Prokunina-Olsson L, Cortessis VK, Kooperberg C, Cussenot O, Benhamou S, Prescott J, Porru S, Dinney CP, Malats N, Baris D, Purdue M, Jacobs EJ, Albanes D, Wang Z, Deng X, Chung CC, Tang W, Bueno-de-Mesquita HB, Trichopoulos D, Ljungberg B, Clavel-Chapelon F, Weiderpass E, Krogh V, Dorronsoro M, Travis R, Tjønneland A, Brenan P, Chang-Claude J, Riboli E, Conti D, Gago-Dominguez M, Stern MC, Pike MC, Van Den Berg D, Yuan JM, Hohensee C, Rodabough R, Cancel-Tassin G, Roupret M, Comperat E, Chen C, De Vivo I, Giovannucci E, Hunter DJ, Kraft P, Lindstrom S, Carta A, Pavanello S, Arici C, Mastrangelo G, Kamat AM, Lerner SP, Grossman HB, Lin J, Gu J, Pu X, Hutchinson A, Burdette L, Wheeler W, Kogevinas M, Tardón A, Serra C, Carrato A, García-Closas R, Lloreta J, Schwenn M, Karagas M, Johnson A, Schned A, Armenti KR, Hosain M, Andriole G Jr, Grubb R 3rd, Black A, Diver WR, Gapstur SM, Weinstein SJ, Virtamo J, Haiman CA, Landi MT, Caporaso N, Fraumeni JF Jr, Vineis P, Wu X, Silverman DT, Chanock S, Rothman N. Genome-wide association study identifies multiple loci associated with bladder cancer risk. Hum Mol Genet, 2014. 23(5):1387-98.

276. Hutter CM, Mechanic LE, Chatterjee N, Kraft P, Gillanders EM. Gene-environment interactions in cancer epidemiology: a National Cancer Institute think tank report. Genet Epidemiol, 2013. 37(7):643-57.

277. Stephens SH, Hartz SM, Hoft NR, Saccone NL, Corley RC, Hewitt JK, Hopfer CJ, Breslau N, Coon H, Chen X, Ducci F, Dueker N, Franceschini N, Frank J, Han Y, Hansel NN, Jiang C, Korhonen T, Lind PA, Liu J, Lyytikäinen LP, Michel M, Shaffer JR, Short SE, Sun J, Teumer A, Thompson JR, Vogelzangs N, Vink JM, Wenzlaff A, Wheeler W, Yang BZ, Aggen SH, Balmforth AJ, Baumeister SE, Beaty TH, Benjamin DJ, Bergen AW, Broms U, Cesarini D, Chatterjee N, Chen J, Cheng YC, Cichon S, Couper D, Cucca F, Dick D, Foroud T, Furberg H, Giegling I, Gillespie NA, Gu F, Hall AS, Hällfors J, Han S, Hartmann AM, Heikkilä K, Hickie IB, Hottenga JJ, Jousilahti P, Kaakinen M, Kähönen M,

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Koellinger PD, Kittner S, Konte B, Landi MT, Laatikainen T, Leppert M, Levy SM, Mathias RA, McNeil DW, Medland SE, Montgomery GW, Murray T, Nauck M, North KE, Paré PD, Pergadia M, Ruczinski I, Salomaa V, Viikari J, Willemsen G, Barnes KC, Boerwinkle E, Boomsma DI, Caporaso N, Edenberg HJ, Francks C, Gelernter J, Grabe HJ, Hops H, Jarvelin MR, Johannesson M, Kendler KS, Lehtimäki T, Magnusson PK, Marazita ML, Marchini J, Mitchell BD, Nöthen MM, Penninx BW, Raitakari O, Rietschel M, Rujescu D, Samani NJ, Schwartz AG, Shete S, Spitz M, Swan GE, Völzke H, Veijola J, Wei Q, Amos C, Cannon DS, Grucza R, Hatsukami D, Heath A, Johnson EO, Kaprio J, Madden P, Martin NG, Stevens VL, Weiss RB, Kraft P, Bierut LJ, Ehringer MA. Distinct loci in the CHRNA5/CHRNA3/CHRNB4 gene cluster are associated with onset of regular smoking. Genet Epidemiol, 2013. 37(8):846-59.

278. Townsend MK, Clish CB, Kraft P, Wu C, Souza AL, Deik AA, Tworoger SS, Wolpin BM. Reproducibility of metabolomic profiles among men and women in 2 large cohort studies. Clin Chem, 2013. 59(11):1657-67.

279. Hiraki LT, Qu C, Hutter CM, Baron JA, Berndt SI, Bézieau S, Brenner H, Caan BJ, Casey G, Chang-Claude J, Chanock SJ, Conti DV, Duggan D, Fuchs CS, Gallinger S, Giovannucci EL, Harrison TA, Hayes RB, Hazra A, Henderson B, Hoffmeister M, Hopper JL, Hudson TJ, Jenkins MA, Küry S, Le Marchand L, Lemire M, Ma J, Manson JE, Nan H, Newcomb PA, Ng K, Potter JD, Schoen RE, Schumacher FR, Seminara D, Slattery ML, Wactawski-Wende J, White E, Wu K, Zanke BW, Kraft P, Peters U, Chan AT. Genetic predictors of circulating 25-hydroxyvitamin D and risk of colorectal cancer. Cancer Epidemiol Biomarkers Prev, 2013. 22(11):2037-46.

280. Rudolph A, Hein R, Lindström S, Beckmann L, Behrens S, Liu J, Aschard H, Bolla MK, Wang J, Truong T, Cordina-Duverger E, Menegaux F, Brüning T, Harth V; GENICA Network, Severi G, Baglietto L, Southey M, Chanock SJ, Lissowska J, Figueroa JD, Eriksson M, Humpreys K, Darabi H, Olson JE, Stevens KN, Vachon CM, Knight JA, Glendon G, Mulligan AM, Ashworth A, Orr N, Schoemaker M, Webb PM; kConFab Investigators; AOCS Management Group, Guénel P, Brauch H, Giles G, García-Closas M, Czene K, Chenevix-Trench G, Couch FJ, Andrulis IL, Swerdlow A, Hunter DJ, Flesch-Janys D, Easton DF, Hall P, Nevanlinna H, Kraft P, Chang-Claude J; Breast Cancer Association Consortium. Genetic modifiers of menopausal hormone replacement therapy and breast cancer risk: a genome-wide interaction study. Endocr Relat Cancer, 2013. 20(6):875-87.

281. Du M, Kraft P, Eliassen AH, Giovannucci E, Hankinson SE, De Vivo I. Physical activity and risk of endometrial adenocarcinoma in the Nurses' Health Study. Int J Cancer, 2014. 134(11):2707-16. PMCID: PMC3960316.

282. Nan H, Morikawa T, Suuriniemi M, Imamura Y, Werner L, Kuchiba A, Yamauchi M, Hunter DJ, Kraft P, Giovannucci EL, Fuchs CS, Ogino S, Freedman ML, Chan AT. Aspirin use, 8q24 single nucleotide polymorphism rs6983267, and colorectal cancer according to CTNNB1 alterations. J Natl Cancer Inst, 2013. 105(24):1852-61.

283. Campa D, Barrdahl M, Tsilidis KK, Severi G, Diver WR, Siddiq A, Chanock S, Hoover RN, Ziegler RG, Berg CD, Buys SS, Haiman CA, Henderson BE, Schumacher FR, Le Marchand L, Flesch-Janys D, Lindström S, Hunter DJ, Hankinson SE, Willett WC, Kraft P, Cox DG, Khaw KT, Tjønneland A, Dossus L, Trichopoulos D, Panico S, van Gils CH, Weiderpass E, Barricarte A, Sund M, Gaudet MM, Giles G, Southey M, Baglietto L, Chang-Claude J, Kaaks R, Canzian F. A genome-wide "pleiotropy scan" does not identify new susceptibility loci for estrogen receptor negative breast cancer. PLoS One, 2014. 9(2):e85955.

284. Hiraki LT, Joshi AD, Ng K, Fuchs CS, Ma J, Hazra A, Peters U, Karlson EW, Giovannucci E, Kraft P, Chan AT. Joint effects of colorectal cancer susceptibility loci, circulating 25-hydroxyvitamin D and risk of colorectal cancer. PLoS One, 2014. 9(3):e92212.

285. Hara K, Fujita H, Johnson TA, Yamauchi T, Yasuda K, Horikoshi M, Peng C, Hu C, Ma RC, Imamura M, Iwata M, Tsunoda T, Morizono T, Shojima N, So WY, Leung TF, Kwan P, Zhang R, Wang J, Yu W, Maegawa H, Hirose H; DIAGRAM consortium, Kaku K, Ito C, Watada H, Tanaka Y, Tobe K, Kashiwagi A, Kawamori R, Jia W, Chan JC, Teo YY, Shyong TE, Kamatani N, Kubo M, Maeda S,

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Kadowaki T. Genome-wide association study identifies three novel loci for type 2 diabetes. Hum Mol Genet, 2014. 23(1):239-46.

286. Shui IM, Lindström S, Kibel AS, Berndt SI, Campa D, Gerke T, Penney KL, Albanes D, Berg C, Bueno-de-Mesquita HB, Chanock S, Crawford ED, Diver WR, Gapstur SM, Gaziano JM, Giles GG, Henderson B, Hoover R, Johansson M, Le Marchand L, Ma J, Navarro C, Overvad K, Schumacher FR, Severi G, Siddiq A, Stampfer M, Stevens VL, Travis RC, Trichopoulos D, Vineis P, Mucci LA, Yeager M, Giovannucci E, Kraft P. Prostate cancer (PCa) risk variants and risk of fatal PCa in the National Cancer Institute Breast and Prostate Cancer Cohort Consortium. Eur Urol, 2014. 65(6):1069-75.

287. Claussnitzer M, Dankel SN, Klocke B, Grallert H, Glunk V, Berulava T, Lee H, Oskolkov N, Fadista J, Ehlers K, Wahl S, Hoffmann C, Qian K, Rönn T, Riess H, Müller-Nurasyid M, Bretschneider N, Schroeder T, Skurk T, Horsthemke B; DIAGRAM+Consortium, Spieler D, Klingenspor M, Seifert M, Kern MJ, Mejhert N, Dahlman I, Hansson O, Hauck SM, Blüher M, Arner P, Groop L, Illig T, Suhre K, Hsu YH, Mellgren G, Hauner H, Laumen H. Leveraging cross-species transcription factor binding site patterns: from diabetes risk loci to disease mechanisms. Cell, 2014. 156(1-2):343-58.

288. Saunders EJ, Dadaev T, Leongamornlert DA, Jugurnauth-Little S, Tymrakiewicz M, Wiklund F, Al Olama AA, Benlloch S, Neal DE, Hamdy FC, Donovan JL, Giles GG, Severi G, Gronberg H, Aly M, Haiman CA, Schumacher F, Henderson BE, Lindstrom S, Kraft P, Hunter DJ, Gapstur S, Chanock S, Berndt SI, Albanes D, Andriole G, Schleutker J, Weischer M, Nordestgaard BG, Canzian F, Campa D, Riboli E, Key TJ, Travis RC, Ingles SA, John EM, Hayes RB, Pharoah P, Khaw KT, Stanford JL, Ostrander EA, Signorello LB, Thibodeau SN, Schaid D, Maier C, Kibel AS, Cybulski C, Cannon-Albright L, Brenner H, Park JY, Kaneva R, Batra J, Clements JA, Teixeira MR, Xu J, Mikropoulos C, Goh C, Govindasami K, Guy M, Wilkinson RA, Sawyer EJ, Morgan A; COGS-CRUK GWAS-ELLIPSE (Part of GAME-ON) Initiative; UK Genetic Prostate Cancer Study Collaborators; UK ProtecT Study Collaborators; PRACTICAL Consortium, Easton DF, Muir K, Eeles RA, Kote-Jarai Z. Fine-mapping the HOXB region detects common variants tagging a rare coding allele: evidence for synthetic association in prostate cancer. PLoS Genet, 2014. 10(2):E1004129.

289. Ghosh A, Hartge P, Kraft P, Joshi AD, Ziegler RG, Barrdahl M, Chanock SJ, Wacholder S, Chatterjee N. Leveraging family history in population-based case-control association studies. Genet Epidemiol, 2014. 38(2):114-22.

290. DIAbetes Genetics Replication And Meta-analysis (DIAGRAM) Consortium. Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility. Nat Genet, 2014. 46(3):234-44.

291. Graff RE, Cho E, Lindström S, Kraft P, Willett WC, Eliassen AH. Premenopausal plasma ferritin levels, HFE polymorphisms, and risk of breast cancer in the Nurses' Health Study II. Cancer Epidemiol Biomarkers Prev, 2014. 23(3):516-24.

292. Woo D, Falcone GJ, Devan WJ, Brown WM, Biffi A, Howard TD, Anderson CD, Brouwers HB, Valant V, Battey TW, Radmanesh F, Raffeld MR, Baedorf-Kassis S, Deka R, Woo JG, Martin LJ, Haverbusch M, Moomaw CJ, Sun G, Broderick JP, Flaherty ML, Martini SR, Kleindorfer DO, Kissela B, Comeau ME, Jagiella JM, Schmidt H, Freudenberger P, Pichler A, Enzinger C, Hansen BM, Norrving B, Jimenez-Conde J, Giralt-Steinhauer E, Elosua R, Cuadrado-Godia E, Soriano C, Roquer J, Kraft P, Ayres AM, Schwab K, McCauley JL, Pera J, Urbanik A, Rost NS, Goldstein JN, Viswanathan A, Stögerer EM, Tirschwell DL, Selim M, Brown DL, Silliman SL, Worrall BB, Meschia JF, Kidwell CS, Montaner J, Fernandez-Cadenas I, Delgado P, Malik R, Dichgans M, Greenberg SM, Rothwell PM, Lindgren A, Slowik A, Schmidt R, Langefeld CD, Rosand J; on behalf of the International Stroke Genetics Consortium. Meta-analysis of genome-wide association studies identifies 1q22 as a susceptibility locus for intracerebral hemorrhage. Am J Hum Genet, 2014. 94(4):511-21.

293. Figueroa JD, Han SS, Garcia-Closas M, Baris D, Jacobs EJ, Kogevinas M, Schwenn M, Malets N, Johnson A, Purdue MP, Caporaso N, Landi MT, Prokunina-Olsson L, Wang Z, Hutchinson A, Burdette L, Wheeler W, Vineis P, Siddiq A, Cortessis VK, Kooperberg C, Cussenot O, Benhamou S, Prescott J, Porru S, Bueno-de-Mesquita HB, Trichopoulos D, Ljungberg B, Clavel-Chapelon F, Weiderpass E,

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Krogh V, Dorronsoro M, Travis R, Tjønneland A, Brenan P, Chang-Claude J, Riboli E, Conti DV, Gago-Dominguez M, Stern MC, Pike MC, Van Den Berg D, Yuan JM, Hohensee C, Rodabough R, Cancel-Tassin G, Roupret M, Comperat E, Chen C, De Vivo I, Giovannucci E, Hunter DJ, Kraft P, Lindstrom S, Carta A, Pavanello S, Arici C, Mastrangelo G, Karagas MR, Schned A, Armenti KR, Hosain M, Haiman CA, Fraumeni JF Jr, Chanock SJ, Chatterjee N, Rothman N, Silverman DT. Genome-wide interaction study of smoking and bladder cancer risk. Carcinogenesis, 2014. 35(8):1737-44.

294. Vanderweele TJ, Tchetgen Tchetgen EJ, Cornelis M, Kraft P. Methodological challenges in Mendelian Randomization. Epidemiology, 2014. 25(3):427-35.

295. Aschard H, Vilhjalmsson BJ, Greliche N, Morange PE, Tregouet DA, Kraft P. Maximizing the power of principal-component analysis of correlated phenotypes in genome-wide association studies. Am J Hum Genet, 2014. 94(5):662-76.

296. Saxena R, Bjonnes A, Prescott J, Dib P, Natt P, Lane J, Lerner M, Cooper JA, Ye Y, Li KW, Maubaret CG, Codd V, Brackett D, Mirabello L, Kraft P, Dinney CP, Stowell D, Peyton M, Ralhan S, Wander GS, Mehra NK, Salpea KD, Gu J, Wu X, Mangino M, Hunter DJ, De Vivo I, Humphries SE, Samani NJ, Spector TD, Savage SA, Sanghera DK. A Genome-Wide Association Study Identifies Variants in Casein Kinase II (CSNK2A2) to be Associated with Leukocyte Telomere Length in a Punjabi Sikh Diabetic Cohort. Cir Cardiovasc Genet, 2014. 7(3):287-95.

297. Barrdahl M, Canzian F, Joshi AD, Travis RC, Chang-Claude J, Auer PL, Gapstur SM, Gaudet M, Diver

WR, Henderson BE, Haiman CA, Schumacher FR, Le Marchand L, Berg CD, Chanock SJ, Hoover RN, Rudolph A, Ziegler RG, Giles GG, Baglietto L, Severi G, Hankinson SE, Lindström S, Willet W, Hunter DJ, Buring JE, Lee IM, Zhang S, Dossus L, Cox DG, Khaw KT, Lund E, Naccarati A, Peeters PH, Quirós JR, Riboli E, Sund M, Trichopoulos D, Prentice RL, Kraft P, Kaaks R, Campa D. Post-GWAS gene-environment interplay in breast cancer: results from the Breast and Prostate Cancer Cohort Consortium and a meta-analysis on 79 000 women. Hum Mol Genet, 2014. 23(19):5260-70.

298. Cao Y, Lindström S, Schumacher F, Stevens VL, Albanes D, Berndt SI, Boeing H, Bas Bueno-de-Mesquita H, Canzian F, Chamosa S, Chanock SJ, Diver WR, Gapstur SM, Gaziano JM, Giovannucci EL, Haiman CA, Henderson B, Johansson M, Marchand LL, Palli D, Rosner B, Siddiq A, Stampfer M, Stram DO, Tamimi R, Travis RC, Trichopoulos D, Willett WC, Yeager M, Kraft P, Hsing AW, Pollak M, Lin X, Ma J. Insulin-like Growth Factor Pathway Genetic Polymorphisms, Circulating IGF1 and IGFBP3, and Prostate Cancer Survival. J Natl Cancer Inst, 2014. 106(6):pii: dju085.

299. Setiawan VW, Schumacher F, Prescott J, Haessler J, Malinowski J, Wentzensen N, Yang H, Chanock S, Brinton L, Hartge P, Lissowska J, Park SL, Cheng I, Bush WS, Crawford DC, Ursin G, Horn-Ross P, Bernstein L, Lu L, Risch H, Yu H, Sakoda LC, Doherty J, Chen C, Jackson R, Yasmeen S, Cote M, Kocarnik JM, Peters U, Kraft P, De Vivo I, Haiman CA, Kooperberg C, Le Marchand L. Cross-cancer pleiotropic analysis of endometrial cancer: PAGE and E2C2 consortia. Carcinogenesis, 2014. 35(9):2068-73.

300. Li Q, Stram A, Chen C, Kar S, Gayther S, Pharoah P, Haiman C, Stranger B, Kraft P, Freedman ML. Expression QTL-based analyses reveal candidate causal genes and loci across five tumor types. Hum Mol Genet, 2014. 23(19):5294-302.

301. Yoo S, Pettersson A, Jordahl KM, Lis RT, Lindstrom S, Meisner A, Nuttall EJ, Stack EC, Stampfer MJ, Kraft P, Brown M, Loda M, Giovannucci EL, Kantoff PW, Mucci LA. Androgen receptor CAG repeat polymorphism and risk of TMPRSS2:ERG positive prostate cancer. Cancer Epidemiol Biomarkers Prev, 2014. 23(10):2027-31.

302. Ng MC, Shriner D, Chen BH, Li J, Chen WM, Guo X, Liu J, Bielinski SJ, Yanek LR, Nalls MA, Comeau ME, Rasmussen-Torvik LJ, Jensen RA, Evans DS, Sun YV, An P, Patel SR, Lu Y, Long J, Armstrong LL, Wagenknecht L, Yang L, Snively BM, Palmer ND, Mudgal P, Langefeld CD, Keene KL, Freedman BI, Mychaleckyj JC, Nayak U, Raffel LJ, Goodarzi MO, Chen YD, Taylor HA Jr, Correa A, Sims M, Couper D, Pankow JS, Boerwinkle E, Adeyemo A, Doumatey A, Chen G, Mathias RA,

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Vaidya D, Singleton AB, Zonderman AB, Igo RP Jr, Sedor JR; FIND Consortium, Kabagambe EK, Siscovick DS, McKnight B, Rice K, Liu Y, Hsueh WC, Zhao W, Bielak LF, Kraja A, Province MA, Bottinger EP, Gottesman O, Cai Q, Zheng W, Blot WJ, Lowe WL, Pacheco JA, Crawford DC; eMERGE Consortium; DIAGRAM Consortium, Grundberg E; MuTHER Consortium, Rich SS, Hayes MG, Shu XO, Loos RJ, Borecki IB, Peyser PA, Cummings SR, Psaty BM, Fornage M, Iyengar SK, Evans MK, Becker DM, Kao WH, Wilson JG, Rotter JI, Sale MM, Liu S, Rotimi CN, Bowden DW; MEta-analysis of type 2 DIabetes in African Americans Consortium. Meta-analysis of genome-wide association studies in African Americans provides insights into the genetic architecture of type 2 diabetes. PLoS Genet, 2014. 10(8):e1004517.

303. Vassy JL, Lautenbach DM, McLaughlin HM, Kong SW, Christensen KD, Krier J, Kohane IS, Feuerman LZ, Blumenthal-Barby J, Roberts JS, Lehmann LS, Ho CY, Ubel PA, MacRae CA, Seidman CE, Murray MF, McGuire AL, Rehm HL, Green RC; MedSeq Project. The MedSeq Project: a randomized trial of integrating whole genome sequencing into clinical medicine. Trials, 2014. 15:85.

304. Wolpin BM, Rizzato C, Kraft P, Kooperberg C, Petersen GM, Wang Z, Arslan AA, Beane-Freeman L, Bracci PM, Buring J, Canzian F, Duell EJ, Gallinger S, Giles GG, Goodman GE, Goodman PJ, Jacobs EJ, Kamineni A, Klein AP, Kolonel LN, Kulke MH, Li D, Malats N, Olson SH, Risch HA, Sesso HD, Visvanathan K, White E, Zheng W, Abnet CC, Albanes D, Andreotti G, Austin MA, Barfield R, Basso D, Berndt SI, Boutron-Ruault MC, Brotzman M, Büchler MW, Bueno-de-Mesquita HB, Bugert P, Burdette L, Campa D, Caporaso NE, Capurso G, Chung C, Cotterchio M, Costello E, Elena J, Funel N, Gaziano JM, Giese NA, Giovannucci EL, Goggins M, Gorman MJ, Gross M, Haiman CA, Hassan M, Helzlsouer KJ, Henderson BE, Holly EA, Hu N, Hunter DJ, Innocenti F, Jenab M, Kaaks R, Key TJ, Khaw KT, Klein EA, Kogevinas M, Krogh V, Kupcinskas J, Kurtz RC, LaCroix A, Landi MT, Landi S, Le Marchand L, Mambrini A, Mannisto S, Milne RL, Nakamura Y, Oberg AL, Owzar K, Patel AV, Peeters PH, Peters U, Pezzilli R, Piepoli A, Porta M, Real FX, Riboli E, Rothman N, Scarpa A, Shu XO, Silverman DT, Soucek P, Sund M, Talar-Wojnarowska R, Taylor PR, Theodoropoulos GE, Thornquist M, Tjønneland A, Tobias GS, Trichopoulos D, Vodicka P, Wactawski-Wende J, Wentzensen N, Wu C, Yu H, Yu K, Zeleniuch-Jacquotte A, Hoover R, Hartge P, Fuchs C, Chanock SJ, Stolzenberg-Solomon RS, Amundadottir LT. Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer. Nat Genet, 2014. 46(9):994-1000.

305. Wu C, Wang Z, Song X, Feng XS, Abnet CC, He J, Hu N, Zuo XB, Tan W, Zhan Q, Hu Z, He Z, Jia W, Zhou Y, Yu K, Shu XO, Yuan JM, Zheng W, Zhao XK, Gao SG, Yuan ZQ, Zhou FY, Fan ZM, Cui JL, Lin HL, Han XN, Li B, Chen X, Dawsey SM, Liao L, Lee MP, Ding T, Qiao YL, Liu Z, Liu Y, Yu D, Chang J, Wei L, Gao YT, Koh WP, Xiang YB, Tang ZZ, Fan JH, Han JJ, Zhou SL, Zhang P, Zhang DY, Yuan Y, Huang Y, Liu C, Zhai K, Qiao Y, Jin G, Guo C, Fu J, Miao X, Lu C, Yang H, Wang C, Wheeler WA, Gail M, Yeager M, Yuenger J, Guo ET, Li AL, Zhang W, Li XM, Sun LD, Ma BG, Li Y, Tang S, Peng XQ, Liu J, Hutchinson A, Jacobs K, Giffen C, Burdette L, Fraumeni JF Jr, Shen H, Ke Y, Zeng Y, Wu T, Kraft P, Chung CC, Tucker MA, Hou ZC, Liu YL, Hu YL, Liu Y, Wang L, Yuan G, Chen LS, Liu X, Ma T, Meng H, Sun L, Li XM, Li XM, Ku JW, Zhou YF, Yang LQ, Wang Z, Li Y, Qige Q, Yang WJ, Lei GY, Chen LQ, Li EM, Yuan L, Yue WB, Wang R, Wang LW, Fan XP, Zhu FH, Zhao WX, Mao YM, Zhang M, Xing GL, Li JL, Han M, Ren JL, Liu B, Ren SW, Kong QP, Li F, Sheyhidin I, Wei W, Zhang YR, Feng CW, Wang J, Yang YH, Hao HZ, Bao QD, Liu BC, Wu AQ, Xie D, Yang WC, Wang L, Zhao XH, Chen SQ, Hong JY, Zhang XJ, Freedman ND, Goldstein AM, Lin D, Taylor PR, Wang LD, Chanock SJ. Joint analysis of three genome-wide association studies of esophageal squamous cell carcinoma in Chinese populations. Nat Genet, 2014. 46(9):1001-6.

306. Liu CT, Buchkovich ML, Winkler TW, Heid IM; African Ancestry Anthropometry Genetics Consortium; GIANT Consortium, Borecki IB, Fox CS, Mohlke KL, North KE, Adrienne Cupples L. Multi-ethnic fine-mapping of 14 central adiposity loci. Hum Mol Genet, 2014. 23(17):4738-44.

307. Song F, Amos CI, Lee JE, Lian CG, Fang S, Liu H, MacGregor S, Iles MM, Law MH, Lindeman NI, Montgomery GW, Duffy DL, Cust AE, Jenkins MA, Whiteman DC, Kefford RF, Giles GG, Armstrong BK, Aitken JF, Hopper JL, Brown KM, Martin NG, Mann GJ, Bishop DT, Bishop JA; GenoMEL

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consortium, Kraft P, Qureshi AA, Kanetsky PA, Hayward NK, Hunter DJ, Wei Q, Han J. Identification of a melanoma susceptibility locus and somatic mutation in TET2. Carcinogenesis, 2014. 35(9):2097-101.

308. Springelkamp H, Höhn R, Mishra A, Hysi PG, Khor CC, Loomis SJ, Bailey JN, Gibson J, Thorleifsson G, Janssen SF, Luo X, Ramdas WD, Vithana E, Nongpiur ME, Montgomery GW, Xu L, Mountain JE, Gharahkhani P, Lu Y, Amin N, Karssen LC, Sim KS, van Leeuwen EM, Iglesias AI, Verhoeven VJ, Hauser MA, Loon SC, Despriet DD, Nag A, Venturini C, Sanfilippo PG, Schillert A, Kang JH, Landers J, Jonasson F, Cree AJ, van Koolwijk LM, Rivadeneira F, Souzeau E, Jonsson V, Menon G; Blue Mountains Eye Study—GWAS group, Weinreb RN, de Jong PT, Oostra BA, Uitterlinden AG, Hofman A, Ennis S, Thorsteinsdottir U, Burdon KP; NEIGHBORHOOD Consortium; Wellcome Trust Case Control Consortium 2 (WTCCC2), Spector TD, Mirshahi A, Saw SM, Vingerling JR, Teo YY, Haines JL, Wolfs RC, Lemij HG, Tai ES, Jansonius NM, Jonas JB, Cheng CY, Aung T, Viswanathan AC, Klaver CC, Craig JE, Macgregor S, Mackey DA, Lotery AJ, Stefansson K, Bergen AA, Young TL, Wiggs JL, Pfeiffer N, Wong TY, Pasquale LR, Hewitt AW, van Duijn CM, Hammond CJ. Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process. Nat Commun, 2014. 5:4883.

309. Falcone GJ, Radmanesh F, Brouwers HB, Battey TW, Devan WJ, Valant V, Raffeld MR, Chitsike LP, Ayres AM, Schwab K, Goldstein JN, Viswanathan A, Greenberg SM, Selim M, Meschia JF, Brown DL, Worrall BB, Silliman SL, Tirschwell DL, Flaherty ML, Martini SR, Deka R, Biffi A, Kraft P, Woo D, Rosand J, Anderson CD; International Stroke Genetics Consortium. APOE ɛ variants increase risk of warfarin-related intracerebral hemorrhage. Neurology, 2014. 83(13):1139-46.

310. Kichaev G, Yang WY, Lindstrom S, Hormozdiari F, Eskin E, Price AL, Kraft P, Pasaniuc B. Integrating functional data to prioritize causal variants in statistical fine-mapping studies. PLoS Genet, 2014. 10(10):e1004722.

311. Mayers JR, Wu C, Clish CB, Kraft P, Torrence ME, Fiske BP, Yuan C, Bao Y, Townsend MK, Tworoger SS, Davidson SM, Papagiannakopoulos T, Yang A, Dayton TL, Ogino S, Stampfer MJ, Giovannucci EL, Qian ZR, Rubinson DA, Ma J, Sesso HD, Gaziano JM, Cochrane BB, Liu S, Wactawski-Wende J, Manson JE, Pollak MN, Kimmelman AC, Souza A, Pierce K, Wang TJ, Gerszten RE, Fuchs CS, Vander Heiden MG, Wolpin BM. Elevation of circulating branched-chain amino acids is an early event in human pancreatic adenocarcinoma development. Nat Med, 2014. 20(10):1193-8.

312. Al Olama AA, Kote-Jarai Z, Berndt SI, Conti DV, Schumacher F, Han Y, Benlloch S, Hazelett DJ, Wang Z, Saunders E, Leongamornlert D, Lindstrom S, Jugurnauth-Little S, Dadaev T, Tymrakiewicz M, Stram DO, Rand K, Wan P, Stram A, Sheng X, Pooler LC, Park K, Xia L, Tyrer J, Kolonel LN, Le Marchand L, Hoover RN, Machiela MJ, Yeager M, Burdette L, Chung CC, Hutchinson A, Yu K, Goh C, Ahmed M, Govindasami K, Guy M, Tammela TL, Auvinen A, Wahlfors T, Schleutker J, Visakorpi T, Leinonen KA, Xu J, Aly M, Donovan J, Travis RC, Key TJ, Siddiq A, Canzian F, Khaw KT, Takahashi A, Kubo M, Pharoah P, Pashayan N, Weischer M, Nordestgaard BG, Nielsen SF, Klarskov P, Røder MA, Iversen P, Thibodeau SN, McDonnell SK, Schaid DJ, Stanford JL, Kolb S, Holt S, Knudsen B, Coll AH, Gapstur SM, Diver WR, Stevens VL, Maier C, Luedeke M, Herkommer K, Rinckleb AE, Strom SS, Pettaway C, Yeboah ED, Tettey Y, Biritwum RB, Adjei AA, Tay E, Truelove A, Niwa S, Chokkalingam AP, Cannon-Albright L, Cybulski C, Wokołorczyk D, Kluźniak W, Park J, Sellers T, Lin HY, Isaacs WB, Partin AW, Brenner H, Dieffenbach AK, Stegmaier C, Chen C, Giovannucci EL, Ma J, Stampfer M, Penney KL, Mucci L, John EM, Ingles SA, Kittles RA, Murphy AB, Pandha H, Michael A, Kierzek AM, Blot W, Signorello LB, Zheng W, Albanes D, Virtamo J, Weinstein S, Nemesure B, Carpten J, Leske C, Wu SY, Hennis A, Kibel AS, Rybicki BA, Neslund-Dudas C, Hsing AW, Chu L, Goodman PJ, Klein EA, Zheng SL, Batra J, Clements J, Spurdle A, Teixeira MR, Paulo P, Maia S, Slavov C, Kaneva R, Mitev V, Witte JS, Casey G, Gillanders EM, Seminara D, Riboli E, Hamdy FC, Coetzee GA, Li Q, Freedman ML, Hunter DJ, Muir K, Gronberg H, Neal DE, Southey M, Giles GG, Severi G; Breast and Prostate Cancer Cohort Consortium (BPC3); PRACTICAL (Prostate Cancer Association Group to Investigate Cancer-Associated Alterations in the Genome) Consortium; COGS

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(Collaborative Oncological Gene-environment Study) Consortium; GAME-ON/ELLIPSE Consortium, Cook MB, Nakagawa H, Wiklund F, Kraft P, Chanock SJ, Henderson BE, Easton DF, Eeles RA, Haiman CA. A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer. Nat Genet, 2014. 46(10):1103-9.

313. Tworoger SS, Zhang X, Eliassen AH, Qian J, Colditz GA, Willett WC, Rosner BA, Kraft P, Hankinson SE. Inclusion of endogenous hormone levels in risk prediction models of postmenopausal breast cancer. J Clin Oncol, 2014. 32(28):3111-7.

314. Bailey JN, Yaspan BL, Pasquale LR, Hauser MA, Kang JH, Loomis SJ, Brilliant M, Budenz DL, Christen WG, Fingert J, Gaasterland D, Gaasterland T, Kraft P, Lee RK, Lichter PR, Liu Y, McCarty CA, Moroi SE, Richards JE, Realini T, Schuman JS, Scott WK, Singh K, Sit AJ, Vollrath D, Wollstein G, Zack DJ, Zhang K, Pericak-Vance MA, Allingham RR, Weinreb RN, Haines JL, Wiggs JL. Hypothesis-independent pathway analysis implicates GABA and acetyl-CoA metabolism in primary open-angle glaucoma and normal-pressure glaucoma. Hum Genet, 2014. 133(10):1319-30.

315. Perry JR, Day F, Elks CE, Sulem P, Thompson DJ, Ferreira T, He C, Chasman DI, Esko T, Thorleifsson G, Albrecht E, Ang WQ, Corre T, Cousminer DL, Feenstra B, Franceschini N, Ganna A, Johnson AD, Kjellqvist S, Lunetta KL, McMahon G, Nolte IM, Paternoster L, Porcu E, Smith AV, Stolk L, Teumer A, Tšernikova N, Tikkanen E, Ulivi S, Wagner EK, Amin N, Bierut LJ, Byrne EM, Hottenga JJ, Koller DL, Mangino M, Pers TH, Yerges-Armstrong LM, Hua Zhao J, Andrulis IL, Anton-Culver H, Atsma F, Bandinelli S, Beckmann MW, Benitez J, Blomqvist C, Bojesen SE, Bolla MK, Bonanni B, Brauch H, Brenner H, Buring JE, Chang-Claude J, Chanock S, Chen J, Chenevix-Trench G, Collée JM, Couch FJ, Couper D, Coviello AD, Cox A, Czene K, D'adamo AP, Davey Smith G, De Vivo I, Demerath EW, Dennis J, Devilee P, Dieffenbach AK, Dunning AM, Eiriksdottir G, Eriksson JG, Fasching PA, Ferrucci L, Flesch-Janys D, Flyger H, Foroud T, Franke L, Garcia ME, García-Closas M, Geller F, de Geus EE, Giles GG, Gudbjartsson DF, Gudnason V, Guénel P, Guo S, Hall P, Hamann U, Haring R, Hartman CA, Heath AC, Hofman A, Hooning MJ, Hopper JL, Hu FB, Hunter DJ, Karasik D, Kiel DP, Knight JA, Kosma VM, Kutalik Z, Lai S, Lambrechts D, Lindblom A, Mägi R, Magnusson PK, Mannermaa A, Martin NG, Masson G, McArdle PF, McArdle WL, Melbye M, Michailidou K, Mihailov E, Milani L, Milne RL, Nevanlinna H, Neven P, Nohr EA, Oldehinkel AJ, Oostra BA, Palotie A, Peacock M, Pedersen NL, Peterlongo P, Peto J, Pharoah PD, Postma DS, Pouta A, Pylkäs K, Radice P, Ring S, Rivadeneira F, Robino A, Rose LM, Rudolph A, Salomaa V, Sanna S, Schlessinger D, Schmidt MK, Southey MC, Sovio U, Stampfer MJ, Stöckl D, Storniolo AM, Timpson NJ, Tyrer J, Visser JA, Vollenweider P, Völzke H, Waeber G, Waldenberger M, Wallaschofski H, Wang Q, Willemsen G, Winqvist R, Wolffenbuttel BH, Wright MJ; Australian Ovarian Cancer Study; GENICA Network; kConFab; LifeLines Cohort Study; InterAct Consortium; Early Growth Genetics (EGG) Consortium, Boomsma DI, Econs MJ, Khaw KT, Loos RJ, McCarthy MI, Montgomery GW, Rice JP, Streeten EA, Thorsteinsdottir U, van Duijn CM, Alizadeh BZ, Bergmann S, Boerwinkle E, Boyd HA, Crisponi L, Gasparini P, Gieger C, Harris TB, Ingelsson E, Järvelin MR, Kraft P, Lawlor D, Metspalu A, Pennell CE, Ridker PM, Snieder H, Sørensen TI, Spector TD, Strachan DP, Uitterlinden AG, Wareham NJ, Widen E, Zygmunt M, Murray A, Easton DF, Stefansson K, Murabito JM, Ong KK. Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche. Nature, 2014. 514(7520):92-7.

316. Skibola CF, Berndt SI, Vijai J, Conde L, Wang Z, Yeager M, de Bakker PI, Birmann BM, Vajdic CM, Foo JN, Bracci PM, Vermeulen RC, Slager SL, de Sanjose S, Wang SS, Linet MS, Salles G, Lan Q, Severi G, Hjalgrim H, Lightfoot T, Melbye M, Gu J, Ghesquières H, Link BK, Morton LM, Holly EA, Smith A, Tinker LF, Teras LR, Kricker A, Becker N, Purdue MP, Spinelli JJ, Zhang Y, Giles GG, Vineis P, Monnereau A, Bertrand KA, Albanes D, Zeleniuch-Jacquotte A, Gabbas A, Chung CC, Burdett L, Hutchinson A, Lawrence C, Montalvan R, Liang L, Huang J, Ma B, Liu J, Adami HO, Glimelius B, Ye Y, Nowakowski GS, Dogan A, Thompson CA, Habermann TM, Novak AJ, Liebow M, Witzig TE, Weiner GJ, Schenk M, Hartge P, De Roos AJ, Cozen W, Zhi D, Akers NK, Riby J, Smith MT, Lacher M, Villano DJ, Maria A, Roman E, Kane E, Jackson RD, North KE, Diver WR, Turner J,

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Armstrong BK, Benavente Y, Boffetta P, Brennan P, Foretova L, Maynadie M, Staines A, McKay J, Brooks-Wilson AR, Zheng T, Holford TR, Chamosa S, Kaaks R, Kelly RS, Ohlsson B, Travis RC, Weiderpass E, Clavel J, Giovannucci E, Kraft P, Virtamo J, Mazza P, Cocco P, Ennas MG, Chiu BC, Fraumeni JF Jr, Nieters A, Offit K, Wu X, Cerhan JR, Smedby KE, Chanock SJ, Rothman N. Genome-wide association study identifies five susceptibility loci for follicular lymphoma outside the HLA region. Am J Hum Genet, 2014. 95(4):462-71.

317. Fu YP, Kohaar I, Moore LE, Lenz P, Figueroa JD, Tang W, Porter-Gill P, Chatterjee N, Scott-Johnson A, Garcia-Closas M, Muchmore B, Baris D, Paquin A, Ylaya K, Schwenn M, Apolo AB, Karagas MR, Tarway M, Johnson A, Mumy A, Schned A, Guedez L, Jones MA, Kida M, Hosain GM, Malats N, Kogevinas M, Tardon A, Serra C, Carrato A, Garcia-Closas R, Lloreta J, Wu X, Purdue M, Andriole GL Jr, Grubb RL 3rd, Black A, Landi MT, Caporaso NE, Vineis P, Siddiq A, Bueno-de-Mesquita HB, Trichopoulos D, Ljungberg B, Severi G, Weiderpass E, Krogh V, Dorronsoro M, Travis RC, Tjønneland A, Brennan P, Chang-Claude J, Riboli E, Prescott J, Chen C, De Vivo I, Govannucci E, Hunter D, Kraft P, Lindstrom S, Gapstur SM, Jacobs EJ, Diver WR, Albanes D, Weinstein SJ, Virtamo J, Kooperberg C, Hohensee C, Rodabough RJ, Cortessis VK, Conti DV, Gago-Dominguez M, Stern MC, Pike MC, Van Den Berg D, Yuan JM, Haiman CA, Cussenot O, Cancel-Tassin G, Roupret M, Comperat E, Porru S, Carta A, Pavanello S, Arici C, Mastrangelo G, Grossman HB, Wang Z, Deng X, Chung CC, Hutchinson A, Burdette L, Wheeler W, Fraumeni J Jr, Chanock SJ, Hewitt SM, Silverman DT, Rothman N, Prokunina-Olsson L. The 19q12 bladder cancer GWAS signal: association with cyclin E function and aggressive disease. Cancer Res, 2014. 74(20):5808-18.

318. Fejerman L, Ahmadiyeh N, Hu D, Huntsman S, Beckman KB, Caswell JL, Tsung K, John EM, Torres-Mejia G, Carvajal-Carmona L, Echeverry MM, Tuazon AM, Ramirez C; COLUMBUS Consortium, Gignoux CR, Eng C, Gonzalez-Burchard E, Henderson B, Le Marchand L, Kooperberg C, Hou L, Agalliu I, Kraft P, Lindström S, Perez-Stable EJ, Haiman CA, Ziv E. Genome-wide association study of breast cancer in Latinas identifies novel protective variants on 6q25. Nat Commun, 2014. 5:5260.

319. Lindström S, Thompson DJ, Paterson AD, Li J, Gierach GL, Scott C, Stone J, Douglas JA, dos-Santos-Silva I, Fernandez-Navarro P, Verghase J, Smith P, Brown J, Luben R, Wareham NJ, Loos RJ, Heit JA, Pankratz VS, Norman A, Goode EL, Cunningham JM, deAndrade M, Vierkant RA, Czene K, Fasching PA, Baglietto L, Southey MC, Giles GG, Shah KP, Chan HP, Helvie MA, Beck AH, Knoblauch NW, Hazra A, Hunter DJ, Kraft P, Pollan M, Figueroa JD, Couch FJ, Hopper JL, Hall P, Easton DF, Boyd NF, Vachon CM, Tamimi RM. Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk. Nat Commun, 2014. 5:5303.

320. Cerhan JR, Berndt SI, Vijai J, Ghesquières H, McKay J, Wang SS, Wang Z, Yeager M, Conde L, de Bakker PI, Nieters A, Cox D, Burdett L, Monnereau A, Flowers CR, De Roos AJ, Brooks-Wilson AR, Lan Q, Severi G, Melbye M, Gu J, Jackson RD, Kane E, Teras LR, Purdue MP, Vajdic CM, Spinelli JJ, Giles GG, Albanes D, Kelly RS, Zucca M, Bertrand KA, Zeleniuch-Jacquotte A, Lawrence C, Hutchinson A, Zhi D, Habermann TM, Link BK, Novak AJ, Dogan A, Asmann YW, Liebow M, Thompson CA, Ansell SM, Witzig TE, Weiner GJ, Veron AS, Zelenika D, Tilly H, Haioun C, Molina TJ, Hjalgrim H, Glimelius B, Adami HO, Bracci PM, Riby J, Smith MT, Holly EA, Cozen W, Hartge P, Morton LM, Severson RK, Tinker LF, North KE, Becker N, Benavente Y, Boffetta P, Brennan P, Foretova L, Maynadie M, Staines A, Lightfoot T, Crouch S, Smith A, Roman E, Diver WR, Offit K, Zelenetz A, Klein RJ, Villano DJ, Zheng T, Zhang Y, Holford TR, Kricker A, Turner J, Southey MC, Clavel J, Virtamo J, Weinstein S, Riboli E, Vineis P, Kaaks R, Trichopoulos D, Vermeulen RC, Boeing H, Tjonneland A, Angelucci E, Di Lollo S, Rais M, Birmann BM, Laden F, Giovannucci E, Kraft P, Huang J, Ma B, Ye Y, Chiu BC, Sampson J, Liang L, Park JH, Chung CC, Weisenburger DD, Chatterjee N, Fraumeni JF Jr, Slager SL, Wu X, de Sanjose S, Smedby KE, Salles G, Skibola CF, Rothman N, Chanock SJ. Genome-wide association study identifies multiple susceptibility loci for diffuse large B cell lymphoma. Nat Genet, 2014. 46(11):1233-8.

321. Joshi AD, Lindström S, Hüsing A, Barrdahl M, VanderWeele TJ, Campa D, Canzian F, Gaudet MM, Figueroa JD, Baglietto L, Berg CD, Buring JE, Chanock SJ, Chirlaque MD, Diver WR, Dossus L, Giles

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GG, Haiman CA, Hankinson SE, Henderson BE, Hoover RN, Hunter DJ, Isaacs C, Kaaks R, Kolonel LN, Krogh V, Le Marchand L, Lee IM, Lund E, McCarty CA, Overvad K, Peeters PH, Riboli E, Schumacher F, Severi G, Stram DO, Sund M, Thun MJ, Travis RC, Trichopoulos D, Willett WC, Zhang S, Ziegler RG, Kraft P; Breast and Prostate Cancer Cohort Consortium (BPC3). Additive interactions between susceptibility single-nucleotide polymorphisms identified in genome-wide association studies and breast cancer risk factors in the Breast and Prostate Cancer Cohort Consortium. Am J Epidemiol, 2014. 180(10):1018-27.

322. Wang Z, Zhu B, Zhang M, Parikh H, Jia J, Chung CC, Sampson JN, Hoskins JW, Hutchinson A, Burdette L, Ibrahim A, Hautman C, Raj PS, Abnet CC, Adjei AA, Ahlbom A, Albanes D, Allen NE, Ambrosone CB, Aldrich M, Amiano P, Amos C, Andersson U, Andriole G Jr, Andrulis IL, Arici C, Arslan AA, Austin MA, Baris D, Barkauskas DA, Bassig BA, Beane Freeman LE, Berg CD, Berndt SI, Bertazzi PA, Biritwum RB, Black A, Blot W, Boeing H, Boffetta P, Bolton K, Boutron-Ruault MC, Bracci PM, Brennan P, Brinton LA, Brotzman M, Bueno-de-Mesquita HB, Buring JE, Butler MA, Cai Q, Cancel-Tassin G, Canzian F, Cao G, Caporaso NE, Carrato A, Carreon T, Carta A, Chang GC, Chang IS, Chang-Claude J, Che X, Chen CJ, Chen CY, Chen CH, Chen C, Chen KY, Chen YM, Chokkalingam AP, Chu LW, Clavel-Chapelon F, Colditz GA, Colt JS, Conti D, Cook MB, Cortessis VK, Crawford ED, Cussenot O, Davis FG, De Vivo I, Deng X, Ding T, Dinney CP, Di Stefano AL, Diver WR, Duell EJ, Elena JW, Fan JH, Feigelson HS, Feychting M, Figueroa JD, Flanagan AM, Fraumeni JF Jr, Freedman ND, Fridley BL, Fuchs CS, Gago-Dominguez M, Gallinger S, Gao YT, Gapstur SM, Garcia-Closas M, Garcia-Closas R, Gastier-Foster JM, Gaziano JM, Gerhard DS, Giffen CA, Giles GG, Gillanders EM, Giovannucci EL, Goggins M, Gokgoz N, Goldstein AM, Gonzalez C, Gorlick R, Greene MH, Gross M, Grossman HB, Grubb R 3rd, Gu J, Guan P, Haiman CA, Hallmans G, Hankinson SE, Harris CC, Hartge P, Hattinger C, Hayes RB, He Q, Helman L, Henderson BE, Henriksson R, Hoffman-Bolton J, Hohensee C, Holly EA, Hong YC, Hoover RN, Hosgood HD 3rd, Hsiao CF, Hsing AW, Hsiung CA, Hu N, Hu W, Hu Z, Huang MS, Hunter DJ, Inskip PD, Ito H, Jacobs EJ, Jacobs KB, Jenab M, Ji BT, Johansen C, Johansson M, Johnson A, Kaaks R, Kamat AM, Kamineni A, Karagas M, Khanna C, Khaw KT, Kim C, Kim IS, Kim JH, Kim YH, Kim YC, Kim YT, Kang CH, Jung YJ, Kitahara CM, Klein AP, Klein R, Kogevinas M, Koh WP, Kohno T, Kolonel LN, Kooperberg C, Kratz CP, Krogh V, Kunitoh H, Kurtz RC, Kurucu N, Lan Q, Lathrop M, Lau CC, Lecanda F, Lee KM, Lee MP, Le Marchand L, Lerner SP, Li D, Liao LM, Lim WY, Lin D, Lin J, Lindstrom S, Linet MS, Lissowska J, Liu J, Ljungberg B, Lloreta J, Lu D, Ma J, Malats N, Mannisto S, Marina N, Mastrangelo G, Matsuo K, McGlynn KA, McKean-Cowdin R, McNeill LH, McWilliams RR, Melin BS, Meltzer PS, Mensah JE, Miao X, Michaud DS, Mondul AM, Moore LE, Muir K, Niwa S, Olson SH, Orr N, Panico S, Park JY, Patel AV, Patino-Garcia A, Pavanello S, Peeters PH, Peplonska B, Peters U, Petersen GM, Picci P, Pike MC, Porru S, Prescott J, Pu X, Purdue MP, Qiao YL, Rajaraman P, Riboli E, Risch HA, Rodabough RJ, Rothman N, Ruder AM, Ryu JS, Sanson M, Schned A, Schumacher FR, Schwartz AG, Schwartz KL, Schwenn M, Scotlandi K, Seow A, Serra C, Serra M, Sesso HD, Severi G, Shen H, Shen M, Shete S, Shiraishi K, Shu XO, Siddiq A, Sierrasesumaga L, Sierri S, Loon Sihoe AD, Silverman DT, Simon M, Southey MC, Spector L, Spitz M, Stampfer M, Stattin P, Stern MC, Stevens VL, Stolzenberg-Solomon RZ, Stram DO, Strom SS, Su WC, Sund M, Sung SW, Swerdlow A, Tan W, Tanaka H, Tang W, Tang ZZ, Tardon A, Tay E, Taylor PR, Tettey Y, Thomas DM, Tirabosco R, Tjonneland A, Tobias GS, Toro JR, Travis RC, Trichopoulos D, Troisi R, Truelove A, Tsai YH, Tucker MA, Tumino R, Van Den Berg D, Van Den Eeden SK, Vermeulen R, Vineis P, Visvanathan K, Vogel U, Wang C, Wang C, Wang J, Wang SS, Weiderpass E, Weinstein SJ, Wentzensen N, Wheeler W, White E, Wiencke JK, Wolk A, Wolpin BM, Wong MP, Wrensch M, Wu C, Wu T, Wu X, Wu YL, Wunder JS, Xiang YB, Xu J, Yang HP, Yang PC, Yatabe Y, Ye Y, Yeboah ED, Yin Z, Ying C, Yu CJ, Yu K, Yuan JM, Zanetti KA, Zeleniuch-Jacquotte A, Zheng W, Zhou B, Mirabello L, Savage SA, Kraft P, Chanock SJ, Yeager M, Landi MT, Shi J, Chatterjee N, Amundadottir LT. Imputation and subset-based association analysis across different cancer types identifies multiple independent risk loci in the TERT-CLPTM1L region on chromosome 5p15.33. Hum Mol Genet, 2014. 23(24):6616-33.

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323. Yuan C, Rubinson DA, Qian ZR, Wu C, Kraft P, Bao Y, Ogino S, Ng K, Clancy TE, Swanson RS, Gorman MJ, Brais LK, Li T, Stampfer MJ, Hu FB, Giovannucci EL, Kulke MH, Fuchs CS, Wolpin BM. Survival among patients with pancreatic cancer and long-standing or recent-onset diabetes mellitus. J Clin Oncol, 2015. 33(1):29-35.

324. Aschard H, Zaitlen N, Lindström S, Kraft P. Variation in predictive ability of common genetic variants by established strata: the example of breast cancer and age. Epidemiology, 2015. 26(1):51-8.

325. Ananthakrishnan AN, Du M, Berndt SI, Brenner H, Caan BJ, Casey G, Chang-Claude J, Duggan D, Fuchs CS, Gallinger S, Giovannucci EL, Harrison TA, Hayes RB, Hoffmeister M, Hopper JL, Hou L, Hsu L, Jenkins MA, Kraft P, Ma J, Nan H, Newcomb PA, Ogino S, Potter JD, Seminara D, Slattery ML, Thornquist M, White E, Wu K, Peters U, Chan AT. Red Meat Intake, NAT2, and Risk of Colorectal Cancer: A Pooled Analysis of 11 Studies. Cancer Epidemiol Biomarkers Prev, 2015. 24(1):198-205.

326. Penney KL, Sinnott JA, Tyekucheva S, Gerke T, Shui IM, Kraft P, Sesso HD, Freedman ML, Loda M, Mucci LA, Stampfer MJ. Association of prostate cancer risk variants with gene expression in normal and tumor tissue. Cancer Epidemiol Biomarkers Prev, 2015. 24(1):255-60.

327. Markt SC, Valdimarsdottir UA, Shui IM, Sigurdardottir LG, Rider JR, Tamimi RM, Batista JL, Haneuse S, Flynn-Evans E, Lockley SW, Czeisler CA, Stampfer MJ, Launer L, Harris T, Smith AV, Gudnason V, Lindstrom S, Kraft P, Mucci LA. Circadian clock genes and risk of fatal prostate cancer. Cancer Causes Control, 2015. 26(1):25-33.

328. Song M, Kraft P, Joshi AD, Barrdahl M, Chatterjee N. Testing calibration of risk models at extremes of disease risk. Biostatistics, 2015. 16(1):143-54.

329. Vijai J, Wang Z, Berndt SI, Skibola CF, Slager SL, de Sanjose S, Melbye M, Glimelius B, Bracci PM, Conde L, Birmann BM, Wang SS, Brooks-Wilson AR, Lan Q, de Bakker PI, Vermeulen RC, Portlock C, Ansell SM, Link BK, Riby J, North KE, Gu J, Hjalgrim H, Cozen W, Becker N, Teras LR, Spinelli JJ, Turner J, Zhang Y, Purdue MP, Giles GG, Kelly RS, Zeleniuch-Jacquotte A, Ennas MG, Monnereau A, Bertrand KA, Albanes D, Lightfoot T, Yeager M, Chung CC, Burdett L, Hutchinson A, Lawrence C, Montalvan R, Liang L, Huang J, Ma B, Villano DJ, Maria A, Corines M, Thomas T, Novak AJ, Dogan A, Liebow M, Thompson CA, Witzig TE, Habermann TM, Weiner GJ, Smith MT, Holly EA, Jackson RD, Tinker LF, Ye Y, Adami HO, Smedby KE, De Roos AJ, Hartge P, Morton LM, Severson RK, Benavente Y, Boffetta P, Brennan P, Foretova L, Maynadie M, McKay J, Staines A, Diver WR, Vajdic CM, Armstrong BK, Kricker A, Zheng T, Holford TR, Severi G, Vineis P, Ferri GM, Ricco R, Miligi L, Clavel J, Giovannucci E, Kraft P, Virtamo J, Smith A, Kane E, Roman E, Chiu BC, Fraumeni JF, Wu X, Cerhan JR, Offit K, Chanock SJ, Rothman N, Nieters A. A genome-wide association study of marginal zone lymphoma shows association to the HLA region. Nat Commun, 2015. 6:5751.

330. Cornelis MC, Zaitlen N, Hu FB, Kraft P, Price AL. Genetic and environmental components of family history in type 2 diabetes. Hum Genet, 2015. 134(2):259-67.

331. Cheng TH, Gorman M, Martin L, Barclay E, Casey G; Colon Cancer Family Registry; CGEMS, Saunders B, Thomas H, Clark S, Tomlinson I. Common colorectal cancer risk alleles contribute to the multiple colorectal adenoma phenotype, but do not influence colonic polyposis in FAP. Eur J Hum Genet, 2015. 23(2):260-3.

332. Panagiotou OA, Travis RC, Campa D, Berndt SI, Lindstrom S, Kraft P, Schumacher FR, Siddiq A, Papatheodorou SI, Stanford JL, Albanes D, Virtamo J, Weinstein SJ, Diver WR, Gapstur SM, Stevens VL, Boeing H, Bueno-de-Mesquita HB, Gurrea AB, Kaaks R, Khaw KT, Krogh V, Overvad K, Riboli E, Trichopoulos D, Giovannucci E, Stampfer M, Haiman C, Henderson B, Le Marchand L, Gaziano JM, Hunter DJ, Koutros S, Yeager M, Hoover RN; The PRACTICAL Consortium, Chanock SJ, Wacholder S, Key TJ, Tsilidis KK. A Genome-wide Pleiotropy Scan for Prostate Cancer Risk. Eur Urol, 2014 Sep 29. Epub ahead of print.

333. Kong SW, Lee IH, Leshchiner I, Krier J, Kraft P, Rehm HL, Green RC, Kohane IS, MacRae CA. Summarizing polygenic risks for complex diseases in a clinical whole-genome report. Genet Med, 2014 Oct 23. Epub ahead of print.

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334. Cornelis MC, Fornage M, Foy M, Xun P, Gladyshev VN, Morris S, Chasman DI, Hu FB, Rimm EB, Kraft P, Jordan JM, Mozaffarian D, He K. Genome-wide association study of selenium concentrations. Hum Mol Genet, 2014 Oct 24. Epub ahead of print.

335. Mondul AM, Shui IM, Yu K, Weinstein SJ, Tsilidis KK, Joshi AD, Agudo A, Berg CD, Black A, Buring JE, Chasman DI, Gaudet MM, Haiman C, Hankinson SE, Henderson BE, Hoover RN, Hunter DJ, Khaw KT, Kühn T, Kvaskoff M, LeMarchand L, Lindstrom S, McCullough M, Overvad K, Peeters PH, Riboli E, Ridker PM, Stram DO, Sund M, Trichopoulos D, Tumino R, Weiderpass E, Willett WC, Kraft P, Ziegler RG, Albanes D. Vitamin D-associated genetic variation and risk of breast cancer in the Breast and Prostate Cancer Cohort Consortium (BPC3). Cancer Epidemiol Biomarkers Prev, 2014 Dec 26. Epub ahead of print.

336. Barrdahl M, Canzian F, Lindström S, Shui I, Black A, Hoover RN, Ziegler RG, Buring JE, Chanock SJ, Diver WR, Gapstur SM, Gaudet MM, Giles GG, Haiman C, Henderson BE, Hankinson S, Hunter DJ, Joshi AD, Kraft P, Lee IM, Le Marchand L, Milne RL, Southey MC, Willett W, Gunter M, Panico S, Sund M, Weiderpass E, Sánchez MJ, Overvad K, Dossus L, Peeters PH, Khaw KT, Trichopoulos D, Kaaks R, Campa D. Association of breast cancer risk loci with breast cancer survival. Int J Cancer, 2015 Jan 21. Epub ahead of print.

Reviews, Chapters, and Editorials

1. Gauderman W and Kraft P. Family-based case-control studies In: Elston R, Olson J and Palmer L eds. Biostatistical Genetics and Genetic Epidemiology, New York: John Wiley and Sons 2002.

2. Kraft, P. and M. de Andrade, Group 6: Pleiotropy and multivariate analysis. Genet Epidemiol, 2003. 25 Suppl 1: p. S50-6.

3. Kraft, P. and S. Horvath, The genetics of gene expression and gene mapping. Trends Biotechnol, 2003. 21(9): p. 377-8.

4. Kraft, P. and D. Hunter, Integrating epidemiology and genetic association: the challenge of gene-environment interaction. Philos Trans R Soc Lond B Biol Sci, 2005. 360(1460): p. 1609-16.

5. Laird N, Kraft P, Lange C and van Steen K. Testing for association in genetic studies In: Silverman E, Shapiro S, Lomas D and Weiss S eds. Respiratory Genetics, London: Arnold Publishers 2005.

6. Kraft P and Lange C. Statistical Methods in Genetic Epidemiology by Duncan C. Thomas. JASA 2005. 7. Kraft, P and Spiegelman, D. Statistical Issues in Epidemiological Studies of Gene-Environment

Interaction, in: Christiani, D. and Fraser, P. (eds), Gene-Environment Interactions: Role in the Modulation of Pulmonary and Autoimmune Disease Risks, The Biomedical & Life Sciences Collection, Henry Stewart Talks Ltd, London 2007 (online at http://www.hstalks.com/?t=BL0111285-Kraft)

8. Swartz, M.D., D.C. Thomas, E.W. Daw, K. Albers, J.C. Charlesworth, T.C. Dyer, B.L. Fridley, M. Govil, P. Kraft, S. Kwon, M.W. Logue, C. Oh, R. Pique-Regi, L. Saba, F.R. Schumacher, and H.W. Uh, Model selection and Bayesian methods in statistical genetics: summary of group 11 contributions to Genetic Analysis Workshop 15. Genet Epidemiol, 2007. 31 Suppl 1: p. S96-102.

9. Bickeboller, H., K.A. Goddard, R.P. Igo, Jr., P. Kraft, J.P. Lozano, N. Pankratz, Y. Balavarca, C. Bardel, P. Charoen, P. Croiseau, C.Y. Guo, J. Joo, K. Kohler, A. Madsen, D. Malzahn, G. Monsees, M. Sohns, and Z. Ye, Issues in association mapping with high-density SNP data and diverse family structures. Genet Epidemiol, 2007. 31 Suppl 1: p. S22-33.

10. Hunter, D.J. and P. Kraft, Drinking from the fire hose--statistical issues in genomewide association studies. N Engl J Med, 2007. 357(5): p. 436-9.

11. Kraft, P. and D.G. Cox, Study designs for genome-wide association studies. Adv Genet, 2008. 60: p. 465-504.

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12. Kraft P. Cox DG. 2008. Optimal Design for Genome-Wide Association Studies. in: Rao DC, Gu CC, editors. Genetic Dissection of Complex Traits. 2nd ed. Boston: Academic Press. p. 465-504

13. Kraft P, Chen J. 2008. Haplotype Association Analysis. in: Rebbeck TR, Ambrosone CB, Shields PG, editors. Molecular Epidemiology: Applications in Cancer and Other Human Diseases. New York: Informa Healthcare USA, Inc. p. 205-24

14. Kraft, P., Curses--winner's and otherwise--in genetic epidemiology. Epidemiology, 2008. 19(5): p. 649-51; discussion 657-8.

15. Kraft, P. and D.J. Hunter, Genetic risk prediction--are we there yet? N Engl J Med, 2009. 360(17): p. 1701-3.

16. Kraft, P. and S. Raychaudhuri, Complex diseases, complex genes: keeping pathways on the right track. Epidemiology, 2009. 20(4): p. 508-11.

17. Kraft P, Hunter D. The challenge of assessing complex gene-gene and gene-environment interactions. In: Khoury MJ, Bedrosian SR, Gwinn M, Higgins J, Ioannidis J, Little J, editors. Human Genome Epidemiology, 2nd Edition: Building the evidence for using genetic information to improve health and prevent disease. New York: Oxford University Press, 2009.

18. Kraft, P., E. Zeggini, and J.P. Ioannidis, Replication in genome-wide association studies. Stat Sci, 2009. 24(4): p. 561-573.

19. Kraft, P. and C.A. Haiman, GWAS identifies a common breast cancer risk allele among BRCA1 carriers. Nat Genet, 2010. 42(10): p. 819-20.

20. Bennett, S.N., N. Caporaso, A.L. Fitzpatrick, A. Agrawal, K. Barnes, H.A. Boyd, M.C. Cornelis, N.N. Hansel, G. Heiss, J.A. Heit, J.H. Kang, S.J. Kittner, P. Kraft, W. Lowe, M.L. Marazita, K.R. Monroe, L.R. Pasquale, E.M. Ramos, R.M. van Dam, J. Udren, and K. Williams, Phenotype harmonization and cross-study collaboration in GWAS consortia: the GENEVA experience. Genet Epidemiol, 2011. 35(3): p. 159-73.

21. Janssens, A.C., J.P. Ioannidis, S. Bedrosian, P. Boffetta, S.M. Dolan, N. Dowling, I. Fortier, A.N. Freedman, J.M. Grimshaw, J. Gulcher, M. Gwinn, M.A. Hlatky, H. Janes, P. Kraft, S. Melillo, C.J. O'Donnell, M.J. Pencina, D. Ransohoff, S.D. Schully, D. Seminara, D.M. Winn, C.F. Wright, C.M. van Duijn, J. Little, and M.J. Khoury, Strengthening the reporting of genetic risk prediction studies (GRIPS): explanation and elaboration. Eur J Epidemiol, 2011. 26(4): p. 313-37. also published in: J Clin Epidemiol, 2011. 64(8): p. e1-e22. Eur J Hum Genet, 2011. 19(5): p. 18 p preceding 494. Eur J Clin Invest, 2011. 41(9): p. 1010-35.

22. Hamilton, C.M., L.C. Strader, J.G. Pratt, D. Maiese, T. Hendershot, R.K. Kwok, J.A. Hammond, W. Huggins, D. Jackman, H. Pan, D.S. Nettles, T.H. Beaty, L.A. Farrer, P. Kraft, M.L. Marazita, J.M. Ordovas, C.N. Pato, M.R. Spitz, D. Wagener, M. Williams, H.A. Junkins, W.R. Harlan, E.M. Ramos, and J. Haines, The PhenX Toolkit: get the most from your measures. Am J Epidemiol, 2011. 174(3): p. 253-60.

23. Bookman, E.B., K. McAllister, E. Gillanders, K. Wanke, D. Balshaw, J. Rutter, J. Reedy, D. Shaughnessy, T. Agurs-Collins, D. Paltoo, A. Atienza, L. Bierut, P. Kraft, M.D. Fallin, F. Perera, E. Turkheimer, J. Boardman, M.L. Marazita, S.M. Rappaport, E. Boerwinkle, S.J. Suomi, N.E. Caporaso, I. Hertz-Picciotto, K.C. Jacobson, W.L. Lowe, L.R. Goldman, P. Duggal, M.R. Gunnar, T.A. Manolio, E.D. Green, D.H. Olster, and L.S. Birnbaum, Gene-environment interplay in common complex diseases: forging an integrative model-recommendations from an NIH workshop. Genet Epidemiol, 2011.

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24. Hamilton, C.M., L.C. Strader, J.G. Pratt, D. Maiese, T. Hendershot, R.K. Kwok, J.A. Hammond, W. Huggins, D. Jackman, H. Pan, D.S. Nettles, T.H. Beaty, L.A. Farrer, P. Kraft, M.L. Marazita, J.M. Ordovas, C.N. Pato, M.R. Spitz, D. Wagener, M. Williams, H.A. Junkins, W.R. Harlan, E.M. Ramos, and J. Haines, Hamilton et al. Respond to "Consolidating Data Harmonization". Am J Epidemiol, 2011.

25. Kraft, P., Population stratification bias: more widespread than previously thought. Epidemiology, 2011. 22(3): p. 408-9.

26. Lindstrom, S. and P. Kraft, Commentary: averaged or stratified measures of risk profile discrimination: horses for courses. Epidemiology, 2011. 22(6): p. 813-4.

27. Mechanic LE, HS Chen, CI Amos, N. Chatterjee, NJ Cox, RL Divi, R. Fan, EL Harris, K. Jacobs, P. Kraft, SM Leal, K. McAllister, JH Moore, DN Paltoo, MA Province, EM Ramos, MD Ritchie, K. Roeder, DJ Schaid, M. Stephens, DC Thomas, CR Weinberg, JS Witte, S. Zhang, S. Zöllner, EJ Feuer, and EM Gillanders, Next generation analytic tools for large scale genetic epidemiology studies of complex diseases. Genet Epidemiol, 2012. 36(1):22-35.

28. Aschard, H., S. Lutz, B. Maus, EJ Duell, TE Fingerlin, N. Chatterjee, P. Kraft, and K. Van Steen, Challenges and opportunities in genome-wide environmental interaction (GWEI) studies. Hum Genet, 2012. 131(10):1591-1613.

29. Zaitlen, N. and P. Kraft, Heritability in the genome-wide association era. Hum Genet, 2012. 131(10):1655-1664.

30. Janssens, AC and P. Kraft, Research conducted using data obtained through online communities: ethical implications of methodological limitations. PLoS Med, 2012. 9(10):e1001328.

part i: general information date prepared: february 2, 2015 · 1 part i: general information date...

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