pglo transformation lab ap lab 6
DESCRIPTION
araC. ori. pGLO. GFP. bla. pGLO Transformation LAB AP LAB 6. BIO-RAD lab book. http://www.mshri.on.ca/nagy/GFP%20mice.jpg. Aequorea victoria : Source of “glowing gene” for this experiment. Jellyfish Gene put into Other Critters. http://www.lafuga.de/GFP_pig.jpg. - PowerPoint PPT PresentationTRANSCRIPT
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pGLO Transformation LABAP LAB 6
http://www.mshri.on.ca/nagy/GFP%20mice.jpg
BIO-RAD lab book
pGLOori
blaGFP
araC
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Aequorea victoria: Source of “glowing gene” for this experiment
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Jellyfish Gene put into Other CrittersJellyfish Gene put into Other Critters
http://www.technologyreview.com/files/21291/monkey_x600.jpg
http://www.lafuga.de/GFP_pig.jpg
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Links to Real-world
• GFP is a visual marker• Study of biological processes
(example: synthesis of proteins)• Localization and regulation of
gene expression• Cell movement• Cell fate during development• Formation of different organs• Screenable marker to identify
transgenic organisms
Links to the Real World
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Using GFP as a biological tracer
http://www.conncoll.edu/ccacad/zimmer/GFP-ww/prasher.htmlWith permission from Marc Zimmer
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PLASMIDExtrachromosomal DNA
Often carry genes for antibiotic resistance
Can be passed from one bacterium to another
http://www.agen.ufl.edu/~owens/age2062/OnLineBiology/OLBB/www.emc.maricopa.edu/faculty/farabee/BIOBK/14_1.jpg
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pGLO plasmid
bla (beta-lactamase)- On all time- Makes protein that breaks down ampicillin- Provides ampicillin resistance
GFP-Green Fluorescent Protein- Glows green in fluorescent light
ARABINOSE OPERON(INDUCIBLE)Turns on when arabinose sugar is presentAllows bacteria to digest this sugar
pGLOori
blaGFP
araCOri-PlasmidReplicationgenes
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operatorpromoter
Inducible operon: lactose
DNATATA
repressor ACTIVE repressor protein
repressor gene1 gene2 gene3 gene4
Digestive pathway model GLUCOSE is food of choice
Don’t need lactose digesting enzymes
Gene is turned off
RNApolymerase
Slide from Kim Foglia
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mRNA
enzyme1 enzyme2 enzyme3 enzyme4
operatorpromoter
Inducible operon: lactose
DNATATARNApolymerase
repressor repressor protein
repressorlactose – repressor proteincomplex
lactose
lac repressor gene1 gene2 gene3 gene4
Digestive pathway model When lactose is present, binds to lac repressor protein & triggers repressor to release DNA
– induces transcription
1 2 3 4
lac lac
laclac
lac
lac
lac
conformational change in repressor protein makes itINACTIVE!
lac
lac
Slide from Kim Foglia
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Lactose operonWhat happens when lactose is present?Need to make lactose-digesting enzymes
Lactose is allosteric regulator of repressor protein
Slide from Kim Foglia
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ARABINOSE OPERON REGULATION
= INDUCIBLE OPERONPRESENCE OF ARABINOSE TURNS ON GENES THAT MAKE ENZYMESTO DIGEST ARABINOSE (along with pGLO gene)Adding ARABINOSE to media makes bacteria GLOW
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Reasons for Each Transformation Step
CaCl2 treatment
Positive charge of Ca+2 ions neutralizes: • negative charge of DNA
phosphates • negative charge of
membrane phospholipids
Ca++
Ca++
OCH2
O
P O
O
O Base
CH2
O
P
O
O
O
Base
OH
Sugar
Sugar
OCa++
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Incubation on ice slows fluidity cell membranes
Heat-shock increases permeability of cell membrane
Nutrient broth incubation allows beta lactamase expression
Reasons for Each Transformation Step
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Selection for plasmid uptake
• Antibiotic becomes a selecting agent– only bacteria with the plasmid will grow on
antibiotic (ampicillin) plate
LB/amp plateLB plate
all bacteria growonly transformed
bacteria grow
a
aa a
aa
aa
aa
aaa a
a
cloning
a a
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Bacterial Transformation
Plasmids
Chromosomal DNA
Bacterial Cell
The uptake of DNA
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pGLO LAB SUPPLIES• FOAM tube holder/float• 4 - flip top microtubes
Blue- Transforming solution (CaCl2) Yellow- LB nutrient broth Pink- label + Purple- label -• 1- colored eraser (to ID your tubes in water bath)• 1-pkg yellow innoculating loops• 2- Sterile pipettes• 4 poured agar plates
1 - LB 2 - LB/amp 1- LB/amp/ara
• PERMANENT MARKER• Cup with crushed ice
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LABEL TUBES
Purple = + pGLO pink = - pGLO
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• Use sterile pipette to
add 250µL transformation
solution to pGLO + and – tubes
Transformationsolution (CaCl2)
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Get your rack on ICE!
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INNOCULATE TUBES WITH E. coli BACTERIA
Pick one colonyTwirl loop in +pGLO tube
Get new loopPick one colonyTwirl loop in –pGLO tube
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EXAMINE pGLO plasmid DNA• Use UV light to examine pGLO plasmid vial
• UV light can be harmful to your eyes!Do not shine in eyes.
• GFP =Green Fluorescent Protein
isolated from jellyfish
USED AS A GENETIC TOOL
http://www.mshri.on.ca/nagy/GFP%20mice.jpg
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PLASMID DNA TRANSFER• THIS STEP IS CRUCIAL!
• Look closely to make sure you have a film of solution across the ring.
(Similar to soapy film when you blow bubbles)
ADD PLASMID TO + TUBE
DO NOT ADD PLASMID TO - TUBE
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Put rack on ICE for 10 MIN!
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WHILE YOUR TUBES COOLLABEL YOUR PLATES
FLIP UPSIDE DOWN AND WRITE LABELS ON BOTTOM … NOT ON TOP!
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• LB (Luria and Bertani) – broth & agar
provides nutrients for bacterial growth
• LB/amp
Luria agar + ampicillin (antibiotic)
• LB/amp/ara
Luria agar + ampicillin + arabinose sugar
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SHOCKING INCREASES UPTAKE OF FOREIGN DNA (PLASMID)
• OSMOTIC SHOCK =Transforming solution– CaCl2
• HEAT SHOCK RAPID TEMPERATURE CHANGE is the key
50 SECONDS 2 MINUTES
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•Place foam rack with + and – tubes on desktop•Use new sterile pipette to add 250 µL Luria broth to + tube•Use new sterile pipette to add 250 µL Luria broth to – tube• Incubate a ROOM TEMPERATURE 10 min
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TAP WITH FINGER TO MIX!
Use NEW STERILEpipette for each vial to add 100 uL bacterial suspensionto CORRECT DISH(CHECK LABELS!)
Use a NEW STERILELOOP FOR EACH PLATEto spread suspension evenly on surface of plate
DO NOT DIG INTO AGAR!
QUICKLY REPLACE LIDS
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FLIP PLATES UPSIDE DOWNSTACK AND TAPE
LABEL WITH YOUR GROUP NAME
PLACE IN INCUBATOR
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Grow? Glow?
• On which plates will colonies grow?
• Which colonies will glow?
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Transformation Results
All cells grow since there is no antibiotic on the plate
LB PLATELuria Broth
+
- PGLO = NO Plasmid
→
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Transformation Results
NO GROWTHCells without plasmid don’t have antibiotic resistance. Can’t grow on media with antibiotic added.
LB/AMP PLATELuria Broth with antibiotic
+
- PGLO = NO plasmid
→
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Transformation Results
LAWNCells with plasmid have antibiotic resistance gene so can grow on media with antibiotic
LB/AMP PLATELuria Broth with antibiotic
+
+ PGLO = Plasmid added
→
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Transformation Results
Cells with pGLO plasmid GROW & GLOW-can grow on media with antibiotic
GLOW on media with arabinose (turns on GFP gene)
LB/AMP/ARA PLATELuria Broth+ antibiotic|+ arabinose
+
+ PGLO = Plasmid added
→
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+pGLOLB/amp
+pGLOLB/amp/ara
-pGLOLB/amp
-pGLO LB
http://faculty.clintoncc.suny.edu/faculty/michael.gregory/files/Bio%20101/Bio%20101%20Laboratory/Bacterial%20Transformation/results.htm