pikas developments in sci tech search web search u 08
DESCRIPTION
My presentation from Web Search University. Delivered 9/22/2008 in Washington, DCTRANSCRIPT
Developments in Sci-Tech Search
Christina K. [email protected]
R.E. Gibson Library & Information Center
The Johns Hopkins University Applied Physics Laboratory
Themes in Science & Technology
-- And their impact on search
• Repositories, digitization
• Computer processing of newly available data
• Social Computing Technologies
Repositories - Digitization
• More full text, more data, in a useful and useable format
• Word and page-level access to old gray literature– Enables discovery– Not necessarily access
Aluka
• African Plants Collection
• Type specimens from European, American, and African herbaria
• Useable browser
• Licensed a la JSTOR
Biodiversity Heritage Library
• Digitization of taxonomic literature
• Open access
• Good metadata, neat interface, entity extraction for taxonomic terms
Google Books & Engineering Data
• Others discuss using Amazon or Google Books to locate information within books – on the shelf….…but have you considered using these for gray lit for engineering questions?
Examples: how much can I improve fuel efficiency by making my car more aerodynamic? What is the average drag coefficient of a modern passenger car?
Maybe the customer should just consider changing the mirrors?
Computer Processing
• Wealth of available full text has enabled new work in search and presentation
• Semantic Markup– Royal Society of Chemistry Project Prospect
• Chemical Search– eMolecules, PubChem, ChemSpider, SureChem
• Deep Indexing – access to tables and images– Illustrata, BioText
• Usable tables/graphs
Project Prospect
• Identification of compounds, gene ontology and subject terms within articles
• Structure search in articles
Chemical Search
• Ubiquitous structure search
• Using identifiers other than CAS-RN– IUPAC International Chemical Identifier, InChI– Simplified molecular input line entry specification,
SMILES
Empirical Formula: C8H11NO2 (in Hill order)
Systematic Name: 4-(2-aminoethyl)benzene-1,2-diol SMILES:Oc1ccc(cc1O)CCNInChI: InChI=1/C8H11NO2/c9-4-3-6-1-2-7(10)8(11)5-6/h1-2,5,10-11H,3-4,9H2 InChIKey: VYFYYTLLBUKUHU-UHFFFAOYAA
(I’d probably just call it dopamine – from ChemSpider.com)
Deep Indexing
• Not a new concept (maybe 1950s or 1960s)
• Newly interesting due to advances in algorithms and availability of electronic full text
• Examples– Automatic citation linking– Table and image search– Code searching in Safari
Useful/Useable Tables and Graphs
Knovel, CRC Handbook of Chemistry and Physics, and other ebook vendors actually let you get usable data from handbooks
Social Computing Technologies
• Scientists are using blogs, wikis, RSS, video sharing… for science
• They are– For personal use– For lab work or collaboration– For storage and retrieval of results– For working with non-scientists
ResearchBlogging.org
• For people who blog about peer-reviewed research in a thoughtful way
• Site is being revamped
Basic Concepts Posts
• Many scientist bloggers post “basic concepts” posts in which they provide a primer in an area of their expertise.
• See a list at: http://tinyurl.com/2pn9cc
Videos
• Journal of Visualized Experiments, JoVE
• SciVee
In the End
• Lots more content– Older but newly available– Some locked up– Some new and user generated
• Neat visualizations, information retrieval experiments, and ways to interact
• Be creative in finding, too!
Presented by:
Christina K. Pikas
R.E. Gibson Library & Information Center
The Johns Hopkins University Applied Physics Laboratory
http://christinaslibraryrant.blogspot.com
Photo Credits
Blondyimp, Flickr
WINGFIN ANCHOVY, Pterengraulis atherinoides, Encyclopedia of Life
Sideritis hirsuta, Meerburgh, N. (1775). Afbeeldingen van zeldzaame gewassen. Te Leyden: Johannes le Mair. From Biodiversity Heritage Library, http://www.biodiversitylibrary.org/bibliography/533
Richard, A., Lefevre, C.T., Petit,A., & Quartin Dillon, L.R. (c1847-1851). Tentamen floræ Abyssinicæ: seu, Enumeratio plantarum hucusque in plerisque Abyssiniæ provinciis detectarum et præcipue a beatis doctoribus Richard Quartin Dillon et Antonio Petit (annis 1838-1843) lectarum. Paris: Arthus Bertrand. From Biodiversity Heritage Library, http://www.biodiversitylibrary.org/bibliography/334 (plate 81)
Barleria mackenii Hook.f. [family ACANTHACEAE] .Fitch, W.H.(1870) Curtis's Botanical Magazine. From Aluka, http://www.aluka.org/action/showMetadata?doi=10.5555/AL.AP.VISUAL.KCUR00000011&pgs=
Granger, R.A. (1995) Fluid Mechanics. New York: Courier Dover Publications. P.773
Hashimoto,T., Omote, M. and Maruoka, K. (2008) 6,6-Substituent effect of BINOL in bis-titanium chiral Lewis acid catalyzed 1,3-dipolar cycloaddition of nitrones. Org. Biomol. Chem., 6, 2263 – 2265. DOI: 10.1039/b804987d
Deep sea octopus.(NOAA). Downloaded from http://www.neptunecanada.ca/gallery/index.html (8/11/2008)
Lab Cat. (2007) Basic Concepts: What are solutions? http://cdavies.wordpress.com/2007/09/18/basic-concepts-what-are-solutions/
Multiwavelength M8. NASA Spitzer Space Telescope Collection. NASA/JPL-Caltech/S. Willner (Harvard-Smithsonian Center for Astrophysics). http://tinyurl.com/5vx46o