pistoia alliance usa conference 2016
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PowerPoint Presentation
Flexible and Comprehensive Analytical Platform for PrecisionClinical Research, Pharma R&D and Education
Opportunity: Omics Data Analysis Market SegmentationSource: Bioinformatics Market by Sector Global Forecast to 20201Market
Global bioinformatics market size, $B (forecast)CAGR = 20.9%
GenomicsProteomicsTranscriptomicsMetabolomicsMicrobiomeOtherRelative shares and growth of market segments, %CAGRRank
2Challenge
3
From Big Biomedical Data to Actionable Results SolutionMachine Learning
Feature extractionIntegrationPredictive modelingData miningSimulation
Biological Meaning
Pathway AnalysisVisualizationRelation to PhenotypeHypothesis Building
Decision making
Clinical trialsTarget CandidateMolecular DiagnosticsRisk and Stratification
Basic Processing
Noise filteringArtifacts removalFlexible PipelinesModular StructureEasily Extendable
A flexible online tool that covers all -omics data types4Product
VisualizationMachine LearningAdapts to UserQSAR IntegrationHybrid Cloud On-site HPC
CirSeq: Logical Framework to Study Low Frequency Mutations
Virus-Host Circuitry
Quasi-Species
Other ApplicationsCIRSEQVirus-Host Interaction Insight
Applications5
Advanced Solution To Study Virus Evolution and Virus-Host Circuitry
Go-to-market and Growth StrategyRemote AccessCost-plus Cloud access to the platform for Individual researchers and small teams
ServiceFull service for challenging projects and ongoing analysis streamlining
ReportingExpert input with quality control, visualizations and method recommendations
EducationHybrid online and offline educational projects that can be adapted to specific use cases
Data StorageIntegration with existing repositoriesOr cloud-based database
CustomizationTargeted solutions to address customChallenges using our modular structure
6Business model
Priyal de ZoysaSolutions MarketingThermo Fisher, Genomics England, Seven Bridges, Pfizer
Dr. Claudia CopelandEducations and CommunicationsTulane University, University of Leipzig, USDA-ARS, University of California, San Diego
Shafin KhanCommercialization AdvisorNew Orleans BioInnovation Center, LSU Health Sciences Center
Empowering Researchers through Hands-On Education
Your intuitive web-based platform is perfectly suited for the educational setting and I am excited at the prospect of it being more widely available in this capacity. It has been a great pleasure to work with the Pine Biotech team thus far, and I look forward to our continued collaborations.
Pine Biotech's team has assembled an impressive array of bioinformatics tools and resources into a unified system that enables an amazing variety of end-to-end omics analyses. Their platform has helped our research by enabling us to explore our RNA-seq data in new ways.
As a laboratory scientist, I can personally attest to the dire need for effective educational tools as NGS moves from the esoteric laboratory environment and into the clinical diagnostic setting
Dr. Christian PfallerDr. Chris McGowinDr. Andrew Woodman
7Value
We believe that in the near future, personalized healthcare will become a reality. To enable this transformation, teams of researchers and clinicians need to use and interpret molecular data in a flexible, efficient way
1950 1979
DNA double-helix structure discovered
Genetic code cracked
First DNA sequencing technology developed
Vision: Enable discoveries that enhance individualized treatments
1980 2016
Polymerase chain reaction first developed
FDA approves first personalized therapeutic
Human Genome Project completed2017
First full patient omics sampling
Cost of sequencing drops to $50
Most conditions require personalized approachVision
1. Sampling2. Data Generation3. Analysis
4. Integration
5. Diagnostics and Stratification
Personalized medical treatment selection
8
Molecular Level Precision Diagnostics
Traction to date9
Transforming data analysis for diverse research teams
Multi-million dollar project involving UCSF, BU, CDC, IBM and Haifa UniversityIdentification of Metabolomics Biomarkers in Clinical Trials for Multiple SclerosisComparative Study between Canine and Human Mutations in Bladder Cancer
PHARMA COMPANY
Experienced Team with a Track Record
10Advisory Board
Prof. Raul AndinoProfessor of Immunology,UCSF, Microbiology
Shafin KhanCommercialization Advisor
Prof. Judith FrydmanStanford University, Biology
Operations
Priyal de Zoysa, Ph.D.Solutions Marketing
Dr. Claudia CopelandEducations and Communications
Elia BrodskyCEO
Board of DirectorsProf. Alfred TauberProfessor of Medicine,Boston UniversityProf. Leonid BrodskyDirector, Tauber Bioinformatics Research Center, University of Haifa
Elka NirCarmel Corporation
Ralph LeopoldInterim CFO
Thank you!
Overcoming Technical and Regulatory Challenges
The T-Bio controller assembles and encrypts the data before sending a pipeline package onto the integrated processing unit that can distribute processes between HPC and cloud for processing the data. Depending on the user, the files can either be uploaded directly onto the controller or assembled from a reference database using the client side data warehouseHIPAA Compliant
Controller
Intermediary DataData Storage
HPC Server
External Data StorageExecutable Files
Appendix
AppendixIT-team with technical experience and skillset shared with Tauber Bioinformatics Research Center at Haifa University
Andrey LopatenkoScalable Data and Security Advisor
Recruit Institute of Technology, Walmart Labs, Apple, GoogleAvi TitievskyHPC Developer
Computer Science and Bioinformatics BackgroundMikhail FarkovGP-GPU, HPC developer
Mathematical Modeling and Computer Science Background
Amitha DasariBioinformatics and Visualization
Bioinformatics Background
Dr. Liudmyla VasilencoMathematician
Mathematical Modeling and Algorithm Development
One environment for all types of biological dataAppendix
Genome read clustering Regulation networkAssociation networkeQTLTransponsRNA MappingTranscriptsProtein-coding expressionNon-coding expressionTranspon abundanceGenetic variantsExome mappingEpigenetic signalsTF bindingMS proteomicsMS metabolomicsLigand dockingDrug specificityFunctional enrichment of modulesLibrary of small moleculesScreening, ClusteringCirSeq: virus mutation variantsVirus titer
HostPathogenJunk DNARNA-seq.RNA-editingExome-seq.CHiP-seq.Bisulfite DNAmethylationVirologyStructural biology libraries of moleculesMachine learning Mass-spec
RNA editing