polymerization/depolymerization motors
TRANSCRIPT
Polymerization/depolymerizationmotors
Movement formation
Kuo Lab,J.H.U.
http://www.nature.com/nature/journal/v407/n6807/extref/4071026a0_S3.mov
http://www.bme.jhu.edu/~skuo/movies/MacrophChase.mov
http://www.bme.jhu.edu/~skuo/movies/GC_filo.mov
Beads movement
From Welch Lab. RickA-coated beads in Xenopusegg extract that was supplemented with rhodamine-labelled actin and visualized by fluorescencemicroscopyhttp://mcb.berkeley.edu/labs/welch/jenggoley2004_1.mov
Movement of rickettsia
Picture From Welch Lab
Actin polymerization generatesprotrusive force
Miyata et al. 1999: giant liposomes containingmonomeric actin (100 or 200 microM) and introducedKCl into individual liposomes by an electroporation
G-actin structure
G-actin structure
F-actin
Nucleation of F-actin
Nucleation of F-actinNucleation by Arp2/3complex Nucleation by Formin
Steady status
Treadmilling
How movement is generated?
Cc = Koff/Kon
Force generation
Force generation
Force generation• Load affects kon or koff or both , it will most likelyincrease Cc:Cc(loaded) = Cc(unloaded) exp (dF/kΤ)
d is the length of the subunit; F the force; k the Boltzmann'sconstant; Τ the absolute temperature
• Fmax = (kT/d) ln ( kon [C]/ koff )• For actin at 50 µM one microfilament can generate aFmax = 9 pN (equivalent to several myosins)• ATP is not required for force generation, mechanical forceis derived from the chemical potential of proteinpolymerization.
Classic Brownian ratchetSingle polymer
Peskin, Odell & Oster 1993, Biophys J 65:316-324
1. Rigid actin polymer
2. Gap generation (at least 2.7nm) betweenpolymer tip and the cell surface by Brownianmotion
3. Intercalation of monomer
http://www.bme.jhu.edu/~skuo/anim/cBRatchet_balls.swf
Classic Brownian ratchetAccording the brownian motion, the magnitude of the"wiggles" are inversely proportional to the size of thebacterium and to the viscosity of its environment.Diffusion is time-dependent, the longer you wait, the largerthe magnitude of Brownian motions and intercalationeventually occurs. The high speed of Listeria motility (10-100 nm/s) implies thatbacteria diffuse very readily. Rapid diffusion means that itsBrownian motions are sufficiently large at the right timescales so that the rates of actin monomer intercalation canexplain Listeria's high speed.
The fact First, fluctuations of bacteria are much smallerthan the intercalation size of G-actin (20 X less).
They must be binding their F-actin tails.Kuo and McGrath 2000, Nature 407:1026-9
Elastic Brownian RatchetSingle polymer
Mogilner & Oster 1996, Biophys J 71: 3030-3045If filament tips flex sufficiently far from the bacterialsurface, actin monomers can intercalate. Also thelonger filament applies increased pressure to thebacterial surface. Increased pressure will eventuallycause bacteria to move.In bead experiments, symmetry breaking can beexplained by stochastic theory with this EBR model.Van Oudenaarde and Theriot, 1999http://www.bme.jhu.edu/~skuo/anim/eBRatchet2.swf
EBR and Tethered filamentsMeshwork
Model fits in the artificial beadmovement
1. Density of coating and percent of extract don’t affect velocity.
2. Smaller beads move slower
3. Tiny beads don’t move
4. Force-Velocity dependence on the tail density
VASP effect
VASP effect
VASP effect
Shape of moving lipid vesicles
ChallengeListeria have episodes of motility with pausesspaced at about 5.4 nm, the bacteria probablystep along growing actin filaments.
Kuo and McGrath 2000, Nature 407:1026-9
Listeria move and pause
Kuo and McGrath, 2000
1. Sambeth, R., Baumgaertner, A. (1999). Rectification of random motion by asymmetric polymerization. Physica A 271(1-2):48-62.
2. van Oudenaarden, A., Theriot, J. (1999). Cooperative symmetry-breaking by actin polymerization in a model for cell motility. Nature Cell Biol. 1(493-499.
3. Giardini, P. A., Fletcher, D. A., Theriot, J. A. (2003). Compression forces generated by actin comet tails on lipid vesicles. PNAS 100(11):6493-6498.
4. Mogilner, A., Oster, G. (2003). Force generation by actin polymerization ii: The elastic ratchet and tethered filaments. Biophys. J. 84(3):1591–1605. 5. Daniels, D., Turner, M. (2004). The force generated by biological membranes on a polymer rod and its response: Statics and dynamics. J. Chem. Phys. 121(15):7401–7407.
6. Plastino, J., Olivier, S., Sykes, C. (2004). Actin filaments align into hollow comets for rapid vasp-mediated propulsion. Current Biology 14(19):1766-1771.
7. Burroughs, N. J., Marenduzzo, D. (2005). Three-dimensional dynamic monte carlo simulations of elastic actin-like ratchets. The Journal of Chemical Physics 123(17):174908-11.
8. Kuo, S.C., and McGrath, J. L. (2000) Steps and fluctuations of Listeria monocytogenes during actin-based motility. Nature, 407: 1026-9.