post-processing of images: maximum intensity projection ... · 5/28/2015 · click file. 2. click...
TRANSCRIPT
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Post-processing of Images: Maximum Intensity Projection,
Rotation and Cropping.
Kim Peifley
05/28/15
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Image J
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In ImageJ software:
1. Click File.
2. Click Open.
3. Look in: box - Find folder you wish to
open.
4. Highlight image you wish to open.
5. File name: - make sure file name you
highlighted is shown here.
6. Click Open.
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You will notice that
your image opens up
in single color and
single slice view. In
this current view you
move the sliders at the
bottom of the photo to
move through the
colors [C] and slice
[Z].
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To Merge Channels:
1. Click Image.
2. Click Color.
3. Click Make Composite.
This is your composite image. You can
still move through the Z stack by
moving the Z slider.
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For Maximum Intensity Projection:
1. Click Image.
2. Click Stacks.
3. Click Z Project….
4. Select which slice you wish to start
and stop.
5. For Projection Type Select Max
Intensity.
6. Click Ok.
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This is the maximum intensity projection image
![Page 8: Post-processing of Images: Maximum Intensity Projection ... · 5/28/2015 · Click File. 2. Click Open. 3. Look in: box - Find folder you wish to open. 4. Highlight image you wish](https://reader033.vdocument.in/reader033/viewer/2022043004/5f88722da09b4f733d34aa3e/html5/thumbnails/8.jpg)
For Turning Image:
1. Click Image.
2. Click Stacks.
3. Click 3D Project….
With original image selected:
4. Select Axis of Rotation as Y-Axis.
5. Select Total rotation as 180.
6. Click Ok.
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This is your rotating image. You click the arrow to move the rotation.
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To Crop Image:
1. Click the box icon.
2. Draw the area on the image you wish to crop.
3. Click Image.
4. Click Crop.
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Original Image Crop Image
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Fiji
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Fiji and ImageJ are almost identical programs. Fiji has some features
that ImageJ does not. Therefore you can follow the ImageJ
instructions when you are in Fiji
Note: Images acquired on the LSM780 are in .czi file format. ImageJ
cannot recognize this file format but Fiji will recognize it.