problem-based learning laboratories on chemicals from biorenewables bioseparations c. glatz, s....
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Problem-Based Learning Laboratories on
Chemicals from BiorenewablesBioseparations
C. Glatz, S. Mallapragada, B. Narasimhan, P. Reilly and J. Shanks
Department of Chemical Engineering
M. HubaEducational Leadership and Policy StudiesIowa State University, Ames, IA 50011-2230
Z. NikolovProdiGene, Inc. and TAMU, College Station TX
Vision We have developed four 1-credit open-ended,
multidisciplinary laboratory courses involving “Chemicals from Biorenewables”. These problem-based learning laboratories have been integrated with existing and new bioengineering-related ChE classes
Target audience: – undergraduate (seniors) and graduate students in
Chemical Engineering – undergraduate and graduate students in
Biochemistry and Biophysics, Biology and Food Science.
Motivation: Topic ChE evolving from a petrochemical-based to a
biorenewables-based discipline. Examples:Product Species used Company
Indigo Microbial Genencor
poly(lactic acid) Microbial Cargill/Dow
Biopol Microbial/plants Monsanto
1,3 propanediol Microbial DuPont
Current ChE curriculum does not reflect this trend Introduce new courses to cover this new technology
Motivation: Educational Problem-based learning
– Open-ended problems– Learning-based approach– Students direct learning of the topic– Problems provide motivation for learning
Multidisciplinary – Team-based approach
ABET criteria– Life-long learning
Curriculum Structure Four new 1-credit laboratories - each associated
with an existing or new ChE undergraduate/ graduate level biotechnology related theory course
Each laboratory course has one open-ended design project topic and list of desired outcomes
Students work in teams of three - each team has a student with a biology/biochemistry background
Opportunity for problem-based, student-directed, multidisciplinary team-based learning
Bioethics component
General Lab Course Outline First two weeks: Common component for all the lab
classes - Teach students statistics, bioethics, how to work in teams, literature searches, laboratory notebooks. Faculty member plays role of instructor with learning exercises in context of technical content of the course.
Next three weeks: Literature review, coming up with plan for solving the problem, team roles, some laboratory training. Faculty member plays role of coach.
Next nine weeks: Implementation of plan, experimental design. Faculty member plays role of coach
Last two weeks: Wrapping up, written and oral presentations
Description of Laboratory Courses Bioinformatics - (Spring 03: Reilly) - Development of
bioinformatic and virtual reality techniques for investigating and predicting enzyme structure and function.
Metabolic Engineering - (Spring 02: Shanks) - Combination of experimental methods with mathematical analysis of the metabolism of ethanol fermentation from yeast.
Bioseparations - (Fall 02: Glatz) - Development of a process for recovering a recombinant protein expressed in corn germ.
Tissue Engineering - (Fall 02: Mallapragada, Narasimhan) - Development of a bioreactor to cultivate bioartificial skin in vitro on suitable biodegradable polymer scaffolds
Acknowledgments
NSF Combined Research and Curriculum Development Grant EEC 0087696
Barry Lamphear and Susan??, Prodigene, Inc. for assistance with ELISA.
Nicolas Deak, Erin Denefe and Tom Mathews for their presentation.
Summer research crew of Danielle McConnell, Jim Kupferschmidt, Yandi Dharmadi, Zhengrong Gu, Maureen Griffin
Tutors Todd Menkhaus and Kevin Saunders
Brazzein Purification
ChE 562
12/06/02
Goal Objectives:• Develop a separation process to recover Brazzein
from transgenic corn • Purity must be > 80% of total protein content• Salt content in final product must be less than
0.01M
Starting material:
• Defatted transgenic corn germ meal with some endosperm contamination. Initial brazzein concentration 250 g per gram of meal
Brazzein molecular structure:
Brazzein Information
• Small molecule 6500 Da
• Thermo-stable 32-82 C
• Water Soluble pH= 3.6, 4, and 7
• pI=5.4
• Water solubility will be at least 50 mg/ml.• Two different types of brazzein. Type II twice
as sweet as Type I.
Experimental ProceduresTransgenic Corn Germ
Extraction Size Exclusion
Cation Exchange Chromatography
Size Exclusion
Purified Brazzein
Extraction Variables• Protein/Water Ratio = 1g/6 mL, temperature = 23 • pH= 4.0-5.5• Salt concentration =50 NaOAc: 100 mM NaCl• Mixing time of 45 minutes
Protein extraction vs pH
594.4690.7
1559.5
1357.9
0
200
400
600
800
1000
1200
1400
1600
1800
pH 4 pH 4.5 pH 5 pH 5.5
Pro
tein
co
ncen
trati
on
(u
g/m
L)
Size Exclusion HPLC• The objective for this test was to asses whether
simple membrane filtration was applicable in this case.
• The Brazzein rich extract (pH 4) is eluted in a Size Exclusion HPLC
• Elution conditions:– pH 4.0
– NaAc Buffer ( NaAc 20mM, NaCl 30 mM)
• A standard elution curve was run in parallel, using known MW markers.
HPLC Standard Curve
Molecular Weight = 147416 exp(-0.4751* Time)
R2 = 0.9404
0
250
500
750
10 12 14 16 18 20 22 24
Time (min)
Mol
ecul
ar W
eigh
t (k
D)
HPLC Results
Brazzein
6.5 kDa
21.1 min.
Contaminant
2.91 kDa
22.8 min.
HPLC Conclusions
• A direct membrane filtration of our Brazzein rich extract is not applicable in this case
• The overlapping contaminant protein peak is important enough to try some other means to purify our product
Cation Exchange Chromatography
• Goal: Separate brazzein from the 2.91 kDa contaminant
• Cation exchange successful removing brazzein from yeast cells (Irwin)
• Resin type: SP (sulphopropyl) Sepharose Fast Flow
• Elute with linear salt gradient 0-1 M NaCl
Cation Exchange Setup
• Column: SP Sepharose fast flow resin• Length = 8 cm• Diameter = 1 cm• Volume = 6.28 mL
• Buffers: • A = 20 mM NaOAc, pH 4.0• B = Buffer A + 1.0 M NaCl
• Operation: • Flowrate = 1.0 mL/min
Cation Exchange for Pure Brazzein
• Sample 40 g/mL pure brazzein in DI water
• Equilibration of column with Buffer A
• Load of 10 column volumes
• Gradient elution from 0%-100% Buffer B in 15 column volumes
• Isocratic flow of 100% buffer in 5 column volumes
Cation Exchange for Corn Germ
• Sample 20 g + 120 mL Buffer A• Mixed 40 min, centrifuged 30 min. (15000
rpm), and filtered (0.22m CA)• Equilibration of column with Buffer A• Load of 5 column volumes • Gradient elution from 0%-100% Buffer B in 15
column volumes • Isocratic flow of 100% buffer in 5 column
volumes
Cation Exchange Results
• Section of concern 27-43 minutes after elution begins (30-45% Salt gradient)
• Estimate fold of purification• assuming no nonprotein UV280 adsorbing
materials
• Perform experiment to determine molecular weight of material in this section
0.0
0.2
0.4
0.6
0.8
1.0
1.2
1.4
1.6
1.8
-3 -2 -1 0 1 2
Time (hr)
Ligh
t Abs
orba
nce
(UV
)
0
20
40
60
80
100
Sal
t Gra
dien
t (%
20
mM
NaO
Ac)Pure Brazzein
Nontransgenic Corn
Salt Gradient
0.0
0.2
0.4
0.6
0.8
1.0
1.2
1.4
1.6
1.8
-3.0 -2.5 -2.0 -1.5 -1.0 -0.5 0.0 0.5 1.0 1.5
Time (hr)
Abs
orba
nce
Fra
ctio
n
0
20
40
60
80
100
Sal
t Gra
dien
t (%
20
mM
NaO
Ac)
Pure Brazzein
Transgenic Corn
Salt Gradient
Conclusions:
• Cationic exchange chromatography is more effective (72 %)
• This is not enough to comply with our specifications
• After analyzing SDS-PAGE electrophoresis results we decided to do a size exclusion
• Expected results will be within specifications
Questions?
Do you have any suitable problem?
Impact Make ChE education more relevant for our
undergraduate students Teach students
– problem-based learning techniques
– develop their metacognitive abilities
– life-long learning
Coupling these educational techniques with valued new technologies
Integrate some of these new experiments in a non open-ended manner into the required ChE undergraduate laboratories
Assessment
Self- and instructor-assessment using– Teamwork rubric– Design rubric– Written report rubric– Oral presentation rubric
Curriculum Structure
MetabolicEngineering
Microbial Engineering Lab
Product Development
Polymeric Biomaterials
Tissue Engineering Lab
Downstream Processing
Bio-separations
Bio-Separations Lab
UpstreamProcessing
Biochemical Engineering
Bioinformatics Lab