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  • Version 9

    Progeny 9 – Importing & Exporting Data

  • 2 Progeny 9 – Importing & Exporting Data v2.1

    Progeny 9 - Importing & Exporting Data

    Copyright © 2015. Progeny Genetics, LLC, All rights reserved. The information contained herein is proprietary and confidential and is the

    exclusive property of Progeny Genetics, LLC. It may not be copied,

    disclosed, used, distributed, modified, or reproduced, in whole or in part,

    without the express written permission of Progeny Genetics, LLC.

    Limit of

    Liability

    Progeny Genetics, LLC has used their best effort in preparing this guide. Progeny Genetics, LLC makes no representations or warranties with respect to the accuracy or completeness of the contents of this guide and specifically disclaims any implied warranties of merchantability or fitness for a particular purpose. Information in this document is subject to change without notice and does not represent a commitment on the part of Progeny Genetics, LLC or any of its affiliates. The accuracy and

    completeness of the information contained herein and the opinions stated herein are not guaranteed or warranted to produce any particular results, and the advice and strategies contained herein may not be suitable for every user.

    The software described herein is furnished under a license agreement or a

    non-disclosure agreement. The software may be copied or used only in

    accordance with the terms of the agreement. It is against the law to copy

    the software on any medium except as specifically allowed in the license or

    the non-disclosure agreement.

    Trademarks The name “Progeny Genetics,” the Progeny Genetics logo, Progeny Clinical, Progeny Lab, and Progeny LIMS are trademarks or registered trademarks of Progeny Genetics, LLC. All other products and company names mentioned herein might be trademarks or registered trademarks of their respective owners.

    Customer

    Support

    Support is available for Support Plan members who purchase Progeny Clinical, Progeny Lab, or Progeny LIMS and that have an annual support agreement and for trial users. Contact Progeny Genetics, LLC at: 800 Palm Trail Suite 200, Delray Beach, FL 33483 574-968-0822 International 800-776-4369 (US/CAN) [email protected] http://www.progenygenetics.com

    mailto:[email protected] http://www.progenygenetics.com/

  • 3 Progeny 9 – Importing & Exporting Data v2.1

    Progeny 9 - Importing & Exporting Data ................................................................................................. 2

    Getting Started .................................................................................................................................... 4

    Overview of the Import Function ............................................................................................................ 4

    Import file structure for pedigrees ................................................................................................... 5

    Pedigree Import Required Columns .............................................................................................. 5

    Pedigree Import Optional Columns ............................................................................................... 6

    Import file structure for individuals .................................................................................................. 6

    Individual Import Required Columns ............................................................................................. 6

    Individual Import Optional Columns ............................................................................................. 6

    Import file structure for samples...................................................................................................... 7

    Sample Import Required Column .................................................................................................. 7

    Sample Import Optional Columns ................................................................................................. 7

    Running the Import................................................................................................................................. 8

    To run the import ............................................................................................................................ 8

    To import pedigree data .................................................................................................................. 9

    To import individual data ............................................................................................................... 13

    To import sample data ................................................................................................................... 17

    Saving and Loading a Report Format .................................................................................................... 20

    To save an import format............................................................................................................... 20

    To load an import format ............................................................................................................... 21

    To import data into a spreadsheet ................................................................................................. 22

    Importing FAM Files .............................................................................................................................. 24

    To import FAM files ....................................................................................................................... 24

    Load Pedigree(s) from Txt ..................................................................................................................... 26

    To Load a pedigree text (.txt) file ................................................................................................... 26

    Load Pedigree(s) from XML ................................................................................................................... 29

    To load a pedigree XML file ............................................................................................................ 29

    Export Pedigree as a Txt ....................................................................................................................... 31

    To export a pedigree between databases as a text file ................................................................... 31

    Export Pedigree as a XML ..................................................................................................................... 33

    To copy a pedigree between databases as an XML file ................................................................... 33

    Export Spreadsheet Data ...................................................................................................................... 36

    To export spreadsheet data ........................................................................................................... 36

  • 4 Progeny 9 – Importing & Exporting Data v2.1

    Getting Started

    You use the Import window to import external pedigrees, individuals, and samples that do not already exist in a Progeny database. You can also use the Import window to import data that updates individuals and samples that already exist in the database. The data can be contained in any non-complex field (not a computed field, not a summary field, and so on) other than a table field. If you import pedigrees that do not already exist in the database, Progeny automatically draws the pedigree and imports all the associated data fields as well.

    Overview of the Import Function

    You use the Import button to import three types of external data that do not already exist in a Progeny database – pedigrees, individuals not contained in pedigrees, and samples. You can also use the Import button to import data that updates individuals and samples that already exist in the database. The data can be contained in any non-complex field (not a computed field, not a summary field, and so on) other than a table field. If you import pedigrees that do not already exist in the database, Progeny automatically draws the pedigree and imports all the associated data fields as well. If you import pedigrees and individuals, you are importing individual level data fields. If you import samples, you are importing sample level data fields.

    If you need to import table data for pedigrees, individuals, or samples, you must use the spreadsheet import function. See To import data into a spreadsheet

  • 5 Progeny 9 – Importing & Exporting Data v2.1

    Figure 1: Import dialog box (for pedigrees)

    All pedigree data and all individual data must be contained in separate text files that have a specific structure.

    The sample text file can contain be imported as a standalone file, or the sample data can be attached to a pedigree or an individual. Any type of import file can contain fields that exist in the Progeny database as well as fields that do not exist in the Progeny database. If the fields do