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Page 1: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development
Page 2: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Purification of next generation medicines

ChairDr Richard Turner

Director of PurificationProcess Sciences

MedImmune

Dr John LiddellSenior Scientific

AdvisorCPI NBMC

Dr Oliver HardickChief Executive Officer

Puridify

Dr Kajsa Stridsberg-FridenSenior Project Manager, Downstream Processing

GE Healthcare Life Sciences

Page 3: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Purification of Next Generation Medicines

Richard TurnerDirector Biopharmaceutical Development. MedImmune. 29th November 2017

Page 4: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

4

Purification - Progress

Page 5: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Purification of therapeutic drugs - current and future

5

Automation + DOE

Analytics Continuous

Development

strategies Scale, COG,

FTP

New

Chromatography AI

New

Modalities

Page 6: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Speakers

Daniel Smith – Rapid Process Development of Viral Vectors

John Liddell – Supporting the changing bioprocessing landscape

Oliver Hardick – New Primary capture technology

Kajsa Stridsberg-Friden – Next Generation Protein A Chromatography

6

Page 7: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Rapid process development of viral vector-based products for cell and gene therapy

applications - challenges and opportunities

Dr Daniel SmithChief Scientific OfficerCobra Biologics

Page 8: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Rapid Process Development of Viral Vector-based Products for Cell & Gene Therapy Applications: Challenges & Opportunities

Dr Daniel Smith,

CSO, Cobra Biologics

14th Annual BioProcessUK Conference, Cardiff, Nov 2017

Page 9: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Cell and Gene Therapy ATMP are here to stay.

Gene Therapy Products

• Over 650+ products in development/market

• 75% of products in Phase I & II development

• 9 approved therapies (4* EU; 3* US; 3 ROW)

• Adeno-, Lenti- and AAV-based delivery contribute to ca.

60% of the vectors used.

• A number of C&GT products have received Fast-track

Approval, Orphan Disease and/or Break-through status.Data Source:

Gene Therapy Market 2015-2025, Roots Analysis Report (2015)

Alliance for Regenerative Medicine Data Report (2016)

Gene Therapy Works

• Gene Therapy is saving the lives of patents today

• Focused on Oncology & Monogenetic Disorders

Page 10: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Overview of Adeno-Associated Virus

AAV is rapidly becoming the delivery vehicle of choice for many gene therapy indications

• In 2015, 25% of all viral vectors in development where AAV-based and used in 60% (80 out of 133) of Gene

Therapy trials for monogenetic diseases [Roots Anal. 2015]

• Small non-enveloped virus, containing single stranded DNA

• Infects both dividing and non-dividing cells

• Replication defective

• Very low immunogenicity due to size (~20nm)

• Not associated with any human disease

• Can be used for in vivo gene deliveries

(source: http://goo.gl/YRqjvB)

Page 11: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

A ‘Classical’ Approach to recombinant AAV Production & Purification

TRANSGENE

ITRITR

REP2 CAP (X) E2A E4 VARNA

Helper Virus

E1-Expressing cell

AAV-vectors

Upstream Variations on a Theme Downstream relies on non-scalable process steps

Cell Pellet (+/- SN)

Cell Lysis

Nuclease Treatment

Gradient (Iodixanol)

Ultra-centrifugation

Gradient

Ultra-centrifugation

Harvest AAV bands

+ Analysis (qPCR)

Harvest AAV bands

+ Analysis (qPCR)

Buffer Exchange

Formulation

Empty

Full

OR

Page 12: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

AAV Vector production via a scalable platform based approach

Genetic Engineering News, (2017); Vol. 37, No.13 ‘Manufacturing of AAV Vectors for Gene Therapy’

Requirements for a platform

• Standard approach

• Rapid Fit evaluation

• Cost of goods

• Speed

• Reliability

• Flexibility

• Scalable

• USP/DSP & Analytics

Page 13: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

AAV vectors come in a variety of flavours

• 12+ naturally occurring human & nonhuman primate serotypes

• Numerous recombinant forms including hybrids and synthetics AAVs

• Sequence identities among the capsid range from ∼55 to 60% (AAV4 & AAV5) to >99% (AAV1 & AAV6)

• Capsid surface topology is conserved in all serotypes

rAAV1 rAAV2 rAAV3 rAAV4 rAAV5 rAAV6 rAAV7 rAAV8 rAAV9 Hybrids Synthetic

█ ▼ ? ▌▐█▼ █▼█ ?Primary

Receptor

? V

‡▼

? ‡█ █?Secondary

Receptor‡

‡▼

Variety adds complexity

Page 14: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Considerations for the development of AAV production & Purification

Inherent Complexity and Variation

Vandenberghe LH, et.al. (2010), Hum. Gene Therapy 21:1251-1257

Variation in the ratio of Full- and Pseudo-Vector particlesSerotype-dependent particle distribution in vector

production

Full nullallogeneicsyngeneic

“Empty”

• Empty : Full vector ratios can vary

widely (3:1 – 30:1) – Serotype & Process

• Some Clinical-grade vectors have had

>90% pseudo content

• EM analysis is the ‘Gold Standard’ for

analysis

• Not suitable for rapid PD

Page 15: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

• Full / Empty ratio usually determined by ELISA & qPCR

• Total Particle analysis is performed using a conformational

specific antibody (A20) in an ELISA

• Genomic Particle analysis is performed by qPCR with

primers sets usually directed at amplicon regions in the

ITR sequences

Challenges for Viral Vector Process Development

The Importance Analytics• Analytics also require development and optimisation

for use as in-process assays

• DNA template for standard

curve requires optimisation

• Linear Plasmid vs Circular

• Free ITR ends for standard

curve

• 3x variation in titre of

reference material observed

• Requires alignment to

transgene-specific qPCR

D’Costa S, et. al., (2016) Mol Ther

Methods Clin Dev, 5:16019

Page 16: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Challenges for Viral Vector Process Development

10:15:1

4:1

18:116:1

20:1

2:1

Optimisation of AAV2::eGFP production

Balancing Quality vs Quantity in USP

• Process development requires the combination of

optimised analytical approaches

Improving Vector Quality (Empty/Full Capsids)

• Media Supplementation supports enhanced vector

quality

Reducing the burden on purification by using Serum & Protein

Free Media & enhancing the number of ‘Full’ capsids.

Page 17: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Locking the USP early in Process Development

T25 Flask (25cm2) HyperFlask (1700cm2)

68-fold scale up

Depth Filtration

Cell Lysis

Nuclease Treatment

TFF

Filtration

Salt Addition

Optimised USP

Scalable Approach: Scale Down & Scale Up Consistency

AAV vectors are prone to aggregation

• AAV-vectors have a tendency to aggregate at

certain concentrations (1x1013 particles/mL)

• Aggregation seems to be promoted by

residual DNA, host proteins and HSPGs

• The combination of ELISA and qPCR based

analytics can indicate gross aggregation

Page 18: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

• Affinity ligand based on camelid single domain antibody

• AAV bind at Neutral pH and is eluted at Low pH (2-5)

• High yields of AAV

• No separation of E/F

Purification of AAV-vectors; Initial Capture of Vector

Capturing AAV with Affinity Chromatography

• Different affinities for different serotypes

• Need to minimize exposure to low pH during elution

VP1

VP2

VP3

LWFE

Image adapted from Data file 28-9207-54 AB,

AVB Sepharose™ High Performance, GEHC

Screening for AAV capture

Resin Screening

Binding Assessment

Elution Screening

Dynamic Binding Studies

DoE Optimisation

Design Space Confirmation

IEX Capture Screen

Data generated by CPI as part of an Innovate UK-funded project with Cobra

Page 19: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Purification of AAV-vectors; Separation of Full & Empty Capsids

Enriching for Full capsids with IEX Chromatography

• Separation based on small charge difference between Full &

Empty capsids

• Elution relies on very shallow duel linear gradients (pH &

conductivity) to effect the separation

Data Sourced from ‘Chromatographic separation of full

and empty AAV8 capsids, BIA separations

Challenges:

• Variations in AAV vector serotype

• Variations in genomic packaging content

• Will separation be sufficient for larger clinical and even commercial

volumes

• High degree of optimisation will be required

Mingozzi F & High KA., (2013),

Blood, 122:23-36

Model of the relationship between capsid dose

and outcome of gene transfer

Page 20: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Purification Challenges: Understanding AAV vector manufacturability

Structure – Function Relationships

• AAV vectors and small and stable

• Relatively pH and thermo-stable

• All serotypes have a similar tertiary structure

Heat induces exposure of the N-

terminal stretches of VP1 AAV2

capsids.

A: Full B: Empty

Bennett A., et.al. (2017) Mol. Therapy: Meth. & Clin. Dev. 6;171-182

AAV serotypes show variation in thermal stability

AAV capsids can undergo conformational changes

Analysis of capsid conformation and VP1 N-terminus exposure.

Kronenberg S., et al. (2005) J. Vir.

79:5296-5303

Bleker S., et al. (2005) J. Vir. 79:2528-40

Can the Bioprocess conditions modify Vector Conformation and

influence processing?

pH; flow; salt

Page 21: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Conclusion

Hitchcock T., et al. (2017) BioProcess International, 19 Sep ‘Development Approaches to AAV production’

Challenges:

• Gene Therapy & AAV vectors are here to stay

• AAV Variety adds Complexity for scalable manufacture

• Major challenges in achieving rapid process development

• Most bioprocess solutions are imported from ‘classical

biologics’ technologies

• Analytical technology lags behind process technology

Opportunities:

• Important to develop fast screening approaches to provide a

handle for rapid process development

• Fundamental to better understand capsid structure-function

relationships and how these relate to the proposed bioprocess

AAV Vector heterogeneity at the physical & functional level

Page 22: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Supporting the changing bioprocessing landscape

Dr John LiddellSenior Scientific AdvisorCPI NBMC

Page 23: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development
Page 24: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Copyright © 2017 Centre for Process Innovation Limited. All Rights Reserved.

14th Annual bioProcess UK Conference (29 November 2017)

Supporting the changing

bioprocessing landscape

John M Liddell PhDSenior Scientific Advisor

at CPI’s National Biologics Manufacturing Centre

Page 25: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

CPI’s National Biologics Manufacturing Centre

Outline

The Evolving Bioprocess Landscape

Case Study Examples

Summary

Page 26: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Who are CPI?

CPI is a UK technology innovation centre and the process element of the Government’s

High Value Manufacturing Catapult.

We use applied knowledge in science and engineering combined with state of the art facilities

to enable our clients to develop, prove, prototype and scale-up the next generation of

products and processes.

NATIONAL

FORMULATION CENTRE

OPENING 2018

NATIONAL INDUSTRIAL

BIOTECHNOLOGY FACILITY

NATIONAL PRINTABLE

ELECTRONICS CENTRE

NATIONAL BIOLOGICS

MANUFACTURING CENTRE

Page 27: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

CPI’s Biologics Network – Oct 2017

Page 28: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Changing Healthcare Landscape

Monday, 19 March 2018

Aging Population

Patient Centric

Delivery

Cost Pressure

Pay for results

Biosimilar Substitution

Precision Medicine

Right treatment for right patient

Emerging Markets

Treatment vs Cure

COMPLEXITY

LA

CK

OF

MA

NU

FA

CT

UR

ING

PL

AT

FO

RM

Legacy

microbial

products

Fab/ Dab

pDNA

Extended

half life

mAb

Conjugate

vaccines

ADC

NA therapeutics

Viral

vaccine

Bispecific

VLP

Viral gene

therapy

Oncolytic

vaccines

MRT

Stem cell

therapies

Somatic cell

editing

Germ cell

editing

Exosome

therapies

Page 29: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Collaborative R&D Project Examples

INNOVATIVE PROCESSES AND

PROCESS TECHNOLOGIES

Novel CHO platforms

Smart formulation in DSP

Continuous, integrated DSP

Nano-template assisted membrane

crystallisation for DSP

Predictive technology to de-risk and

streamline drug development

Cell and bioprocess engineering for rapid

and intensive continuous production

NEW AND IMPROVED

ANALYTICAL TECHNOLOGIES

CD for higher order structure

HDX-MS for higher order structure

PAT for lyophilisation

Microfluidic approach to test for CQAs of

lentivirus vectors (EngD)

PROCESS DEVELOPMENT FOR NOVEL

PRODUCTS AND FORMULATION

Industrial manufacturing platform for AAV

Novel glycosylated drugs and HT analytics

Improved VLP production platform (EngD)

Process development for gold core, glycan

coated nanomedicines

Platform for aggregation profiling

Drug development and manufacturing

economics evaluation (EngD)

Page 30: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Improved Downstream Process (DSP) Operation through

Formulation Innovation.

• Apply Arecor formulation technologies to screen and evaluate

smart DSP formulations to improve product stability, reduce

viscosity, expand design space and increase yield

• Create a new development route for difficult to manufacture

biologics products

Speed up DSP development, transfer

to manufacture and operability.

Platform applied to a wide variety of

new and challenging products. DSP

improved with in-process smart

formulations is likely to offer a cost-

effective, scalable alternative to

traditional processes enabling

improved yields and product quality.

DSP activities (high capacity

chromatography, low pH hold, UF/DF)

can cause product destabilisation

resulting in degradation and aggregation,

compromising product quality, safety and

process productivity

INDUSTRIAL CHALLENGE IMPACT? !

FUNDED BY

CASE STUDY 1

Arecor Project

PARTNERS

Page 31: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Transfer and Scale-up of FDB USP, DSP

and Analytical mAb Platform Processes at CPI

Example of comparative quality

data for final mAb product quality

(HCP & SEC) of FDB001 mAb

purified by mAb platform process

produced at the different

locations at 10L scale (FDB

&CPI) and scaled to 200L at CPI

ANALYSIS

Appearance CHO HCP

A280/A600 Protein A

SEC uplc MFI

cIEF DLS

Reduced CE DSC

Non reduced CE

USP: 10L followed by scale-up to non-GMP 200L Sartorius Biostat™ STR SU bioreactor DSP: Scale-up and consistency

Step Yield (%)

DSP step FDB 10L CPI 10L CPI 200L

Protein A 97.5 84.3 104.4

VI filtrate 82.4 84 99.8

CIEX 92.7 91.8 90.4

AIEX 93.7 93.8 93.7

DSP intermediates of consistent quantity retained for formulation studies

Page 32: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Testing Downstream Processing Formulation Impact

Two rounds of assessment of the impact of the elution buffer formulations were

tested using the high throughput automated liquid handling Perkin Elmer JANUS

BioTx platform at CPI.

This was coupled with application of multiple high resolution analytical methods

to determine the impact of the formulation buffers on step performance and

product quality.

The second round (refined formulations) achieved elution profiles comparable to

the control, important for process yield.

Significant stabilisation of mAb through downstream processing was achieved

using Arecor chromatographic elution formulations optimised in this second

round evaluation.

Page 33: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Integrate technologies to increase number of high quality

candidates entering development, develop better platforms for

manufacture and improved methods to select candidates with

best chance of being safe, easy to manufacture and formulate

Harnessing UK innovation to

streamline the biologics supply chain

from molecule to medicine

Strong UK consortium, including major

companies and SME technology

suppliers

Current technologies not optimised for

next-generation molecules.

High failure rate during drug

development significant contributor to

costs.

Assessment methodologies to select

best candidates are not well developed

INDUSTRIAL CHALLENGE IMPACT? !

FUNDED BY

CASE STUDY 2

BioStreamline

PARTNERS

Page 34: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

BioStreamline Components

LONZA, UCB, CPI

Data generation through experimental studies (USP/DSP/analytical)

used to develop algorithms to predict molecule developability risk from

molecular features.

SPHERE FLUIDICS

Developing an automated platform with UCB to give more than a 10-

fold productivity increase in antibody number through pipelines.

HORIZON DISCOVERY

Applying gene editing technology (CRISPR) to develop flexible

efficient cellular systems to support the future needs of biologics

manufacture.

ALCYOMICS LTD

Novel immunogenicity tool to used to predict safety problems before

clinical trials.

Better candidate selection will

lower risk of developability

failure and increase the

efficiency of the supply chain

High drug clinical failure rates

a major contributor to

development costs

Page 35: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Developability tool data generation

200 mAb sequences evaluated experimentally and in silico for more detailed study

Short list of 50 mAb variants with different developability features selected

Cell lines expressing the molecules produced

Developability risks data collected (CPI / Lonza). A wide range of biochemical, physical

methods used to assess developability challenges for each molecule

Evaluation of different chemometric approaches (statistical, machine learning,

clustering etc.) to describe data and generate decisional and predictive tools

BIOCHEMICAL DATA

Charged variants

Glycoforms

Aggregation

Fragmentation

Impurity quantitation

DEGRADATION PATHWAYS

Isomerisation

Oxidation

Accelerated & real time stability

pH stability

BIOPHYSICAL DATA

Aggregation onset

Hydrophobicity

Protein / protein interaction

Rheology

Higher order structure

Page 36: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Replace multi-step chromatography with innovative Continuous

Template-Assisted Membrane Crystallization as main

purification step for Downstream processing

Highly innovative, high risk, high

reward project that needs a large

multidisciplinary consortium to make

progress in

DSP (batch) ≈ 66% mAb production cost

mAbs ≈ $125 billion, > 50%biopharma

market

Reuse & storage challenges

High buffer requirements

Large footprint

INDUSTRIAL CHALLENGE IMPACT? !

FUNDED BY

CASE STUDY 1

Arecor Project

PARTNERS

Horizon 2020

Page 37: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

www.amecrys-project.euProject Amecrys Basic Approach

Permeable membrane

containing silica

nanotemplates to

achieve super-

saturation and rapid

crystal growth

DEVELOPMENT

APPROACH

Pure protein

Intermediate

purification

Bioreactor filtrate

PRE-TREATMENT

CONDITIONING

Pre treatment and

conditioning

Inline concentration

In line diafiltration

Potential for a truly

continuous protein

process

Page 38: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Amecrys Components

Cell line and USP process

Conventional purification method

Analytical methods

Generation of baseline data and intermediates

Crystallisation protocols development

Nanotemplate and crystallisation

Silica based nanotemplates

Surface modification – hydrophobicity/ hydrophilicity

Control of pore size distribution

Nanotemplate impact on crystallisation rates

Modelling support

Page 39: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Summary

Evolving

biopharmaceutical

landscape presenting

new development

challenges

New approaches to

development in both

USP and DSP

necessary

An integral part of

the UK’s strategy to

maintain its position

as a world leader in

biologics

manufacture

NATIONAL BIOLOGICS

MANUFACTURING

CENTRE OPENED IN

SEPT. 2015

Expertise in translation of

development to manufacture

High throughput

development platforms

GROWING NETWORK

OF PARTNERS AND

COLLABORATIONS

Progressing on multiple

projects

Strong forward pipeline of

activities

Page 40: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Thank you...For more information visit www.uk-cpi.com

Email:

Twitter:

[email protected]

@ukCPI

Page 41: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Primary capture purification offeringnew single-use bioprocessing opportunities

Dr Oliver HardickChief Executive OfficerPuridify

Page 42: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Development of the next generationprotein A chromatography resin

Dr Kajsa Stridsberg-FridenSenior Project Manager, Downstream ProcessingGE Healthcare Life Sciences

Page 43: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Development of the next generation Protein A chromatography resin

Kajsa Stridsberg Fridén, PhDSenior Project Manager, GE Healthcare

Page 44: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

• Opportunities and challenges with Protein A chromatography

• Design of affinity ligand for improved alkaline stability

• Design of solid support for increased dynamic binding capacity

• Optimization of solid support in combination with affinity ligand

• mAb applications

• Purification performance

• Life time study

• Summary and conclusions

Outline

KA610250917PP I Nov 2017

Page 45: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Opportunities and challenges with Protein A chromatography

Page 46: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Protein A: the key for efficient mAb manufacturing

Protein A is well-established as the key purification step in mAb manufacturing processes.

Key success factors:• Natural affinity is the result of millions of years of

evolution and offers high purity and yield in one step.

• Engineered variants of Protein A offer significant advantages for industrial manufacturing.

• Proven and regulatory-accepted technology for fast and predictable development to manufacturing scale.

KA610250917PP I Nov 2017

Page 47: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Increased time and cost pressure on development and manufacturing of mAbs:

• Increasing upstream titers can make the Protein A chromatography process step a bottleneck.

• The combination of high nutrient load and low alkaline stability of the Protein A ligand leads to increased bioburden risk and costly process deviations.

Challenges with Protein A chromatography

KA610250917PP I Nov 2017

Page 48: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

First challenge: Protein A resin capacity constraints

• Long manufacturing lead times and required Protein A resin volumes higher than necessary.

• Lack of prepacked disposable chromatography column solutions for the high-titer processes.

Upstream titer development Consequences of limited capacity

5–50 mg/L

50–1000 mg/L

1000–5000 mg/L

1982–1985

2005–2015

5000–10000 mg/L

2015–2025

KA610250917PP I Nov 2017

2005–2015

Page 49: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Second challenge: bioburden and cross-contamination risks

• Protein A capture step exposed to crudest feed and highest concentrations of nutrient load.

• Current Protein A ligand solutions have lower resistance to the commonly used cleaning and sanitization solution 1 M NaOH.

• Less efficient cleaning, with potential cross-contamination risk and fouling, impacts dynamic binding capacity.

• Elevated bioburden risk.

Elevated risk for bioburden at the Protein A step Consequences of limited alkaline stability

mAb capture step:Elevated bioburden andCross-contamination risk

Upstream Downstream

KA610250917PP I Nov 2017

Page 50: Purification of next · Cell and Gene Therapy ATMP are here to stay. Gene Therapy Products • Over 650+ products in development/market • 75% of products in Phase I & II development

Ligand Base matrix

• Point mutation

• Length of ligand

Base matrix + ligand

Development of affinity chromatography resin

• Bead size

• Pore size

• Matrix volume

• Coupling chemistry

• Length of ligand

• Ligand density

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• Next-generation Protein A chromatography resin.

• Resin and ligand design developed from well-established MabSelect SuRe™ ligand and high-flow agarose base matrix.

Built on the heritage and proven performance of the MabSelect family of resins

Introducing MabSelect™ PrismA

New picture required

KA610250917PP I Nov 2017

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Design of affinity ligand for improved alkaline stability

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• Selection of stable single domain.

• Theoretical and empirical identification of alkaline-sensitive amino acids.

• Point mutation of sensitive amino acids.

• Multimerization into alkaline stabilized ligand.

• Thorough functional evaluation.

• More than 400 constructs were screened using the Biacore™ SPR system.

Protein engineering towards increased alkaline stability

SPR = surface plasmon resonance

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Evaluation of alkaline stability of ligand using Biacore™ SPR system

Cleaning with 0.5 M NaOH in 100 cycles using polyclonal IgG as sample.

Contact time for 0.5 M NaOH: 10 min per cycle.

Cycle 100Cycle 2Cycle 1

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Alkaline stability screening

Biacore™ results

Cycle

Rem

ain

ing

rela

tive

cap

acit

y (

%)

Tetramer ligands compared

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Alkaline stability study performed in columns

• Using Protein A chromatography resin with the final hexamer ligand construct.

• > 95% of DBC retained after 150 cycles with 0.5 M NaOH.

• Stable DBC enables higher load volumes over the resin lifetime.

Cycling with buffer only (no protein sample). Cleaning with 0.5 M NaOH,15 min contact time per cycle. High stability in 0.5 M NaOH over repeated cleaning cycles.

DBC = dynamic binding capacity

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Alkaline stability study performed in columns

• Using Protein A chromatography resin with the final hexamer ligand construct.

• > 90% of DBC retained after 150 cycles with 1 M NaOH (compared with ~ 50% retained DBC for MabSelect SuRe™ LX).

• Save footprint by aligning your CIP solutions throughout chromatography steps.

Cycling with buffers but no sample. Cleaning with 1.0 M NaOH 15 min contact time per cycle.

Re-engineered protein A ligand enables repeated cleaning with 1.0 M NaOH.

DBC = dynamic binding capacityCIP = cleaning-in-place

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Design of solid support for increased dynamic binding capacity

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Pore size versus matrix volume

• Pore size optimized for the chosen ligand.

• Pore size and matrix volume optimized with respect to pressure-flow properties.

• Development of new matrix synthesis methods to meet the requirements on the new solid support.

Matrix volume

Pore size

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Dynamic binding capacity versus pressure-flow properties

DBC Flow rate

Porosity

Particle size

Trade off Effect of particle size and porosity on DBC and flow rate

Particle size

Porosity

DBC

Flow rate

DBC- dynamic binding capacity

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Base matrix optimized for high flow throughput

Flow properties of MabSelect™ PrismA AxiChrom™ 300, 20 cm bed height, temperature 20°C

High-flow agarose base matrix provides excellent pressure-flow performance | Verified in large-scale BioProcess™ columns

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Optimization of solid support in combination with ligand

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Variation of ligand length

Pore surface

Hexamer construct

Tetramer construct

Example: different ligand length with maintained ligand density

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Base matrix and ligand design for optimal binding capacity

Varying ligand length on base matrix A (larger pores) Varying ligand length on base matrix B (smaller pores)

Combination of base matrix and ligand design required for optimal binding capacity.Large pores allow for larger ligand densities, even with longer ligand constructs.

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QB10 = dynamic binding capacity at 10% breakthroughRT = residence time

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• Up to 40% increased DBC compared with MabSelect SuRe LX at 2.4 min RT.

• Up to 30% increased DBC compared with MabSelect SuRe LX at 4 min RT.

• Up to 25% increased DBC compared with MabSelect SuRe LX at 6 min RT.

Significantly increased DBC

Comparison of DBC

Polyclonal IgG results

QB10 = dynamic binding capacity at 10% breakthroughRT = residence time

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mAb applications

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Monoclonal antibody binding capacities

Dynamic binding capacity mAb1 Dynamic binding capacity mAb2

MabSelect PrismA 100 mg/mLMabSelect SuRe LX 90 mg/mLMabSelect SuRe 66 mg/mL

Equilibrium capacity mAb1

KA610250917PP I Nov 2017

QB10 = dynamic binding capacity at 10% breakthrough

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Capture of monoclonal antibody using different Protein A resins

Protein A chromatography resins:

• MabSelect™ PrismA

• MabSelect SuRe™

• MabSelect SuRe LX

Load: 80% of QB10 (6 min residence time)

Load mAb1 (g/L resin) Load mAb2 (g/L resin)

MabSelect PrismA 58 63

MabSelect SuRe 39 36

MabSelect SuRe LX 46 43

Purification using standard protocol Load

QB10 = dynamic binding capacity at 10% breakthrough

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Recovery (mAb1)

HCP (mAb1)* HCP (mAb2)**

Performance benchmarking: recovery and removal of host cell protein (HCP)

* Start HCP 1.4 x 105 ppm** Start HCP 5.7 x 105 ppm

Recovery (mAb2)

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Aggregates (mAb1)* Aggregates (mAb2)*

hcDNA (mAb1)**

Performance benchmarking: aggregate and host cell DNA (hcDNA) removal

hcDNA (mAb2)***

** Start hcDNA 8037 ppm*** Start hcDNA 6785 ppm

* MabSelect PrismA: aggregate level associated with higher load.

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Pool volume (mAb1) Pool volume (mAb2)

Leached Protein A (mAb1)* Leached Protein A (mAb2)*

Performance benchmarking: pool volume and leached Protein A

* MabSelect PrismA leached protein A level associated with higher ligand density and ligand length. CV = column volume

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Lifetime study with mAb-containing cell culture supernatant

• More than 90% remaining DBC using mAb-containing feed and 0.5 M NaOH as cleaning agent in between cycles (15 min contact time per cycle).

• Higher alkaline stability enables longer lifetime and improves process economy.

Resin comparision Alkaline stability with protein

MabSelect™ PrismA 91%

MabSelect SuRe™ LX 83%

MabSelect SuRe 61%

DBC = dynamic binding capacity

KA610250917PP I Nov 2017

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Conclusions

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Conclusions

• New optimized ligand with better alkaline stability.

• New base matrix with optimized bead size and porosity.

• The combination of new base matrix and a longer ligand increases the dynamic binding capacity at all residence times tested.

• Performance in terms of recovery and purity similar to reference Protein A resins.

• The improved alkaline stability enables efficient cleaning of the resin using 0.5–1 M NaOH over many purification cycles.

• The use of 1 M NaOH for sanitization enables increased bioburden control.

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KA610250917PP I Nov 2017

gelifesciences.com

GE, the GE Monogram, AxiChrom, Biacore, BioProcess, MabSelect, and MabSelect SuRe are trademarks of General Electric Company.

© 2017 General Electric Company.

All goods and services are sold subject to the terms and conditions of sale of the company within GE Healthcare which supplies them. A copy of these terms and conditions is available on request. Contact your local GE Healthcare representative for the most current information.

For local office contact information, visit gelifesciences.com/contact

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Refreshments, networking, exhibition and partnering

16:00 – 16:30

Outputs from workshops16:30 Lower Hall